RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3868
(69 letters)
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 90.0 bits (223), Expect = 4e-23
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66
GA+F INGPEIMSK GESE LR+ F+EA++N+PSIIFIDE+DAIAPKRE+
Sbjct: 237 GAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE 289
Score = 67.6 bits (165), Expect = 3e-15
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
GA F + GPEI+SK GESE +R+ F +A + +P+IIF DE+DAIAP R R
Sbjct: 512 GANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 74.9 bits (185), Expect = 2e-19
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 TTLCR---DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62
TTL + LGA F I+G E++SK GESE LR+ FE A K +P +IFIDE+DA+A
Sbjct: 12 TTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAG 71
Query: 63 KREKRE 68
R
Sbjct: 72 SRGSGG 77
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 64.5 bits (157), Expect = 4e-14
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 12 SLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
+ F + G E++SK GESE N+R+ FE+A K +PSIIFIDE+D++A R
Sbjct: 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR 351
Score = 60.2 bits (146), Expect = 1e-12
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 12 SLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+ GA F INGPEI+SK GESE LR+ FEEA+K +PSIIFIDE+DA+APKR +
Sbjct: 40 NEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQ 96
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 55.3 bits (134), Expect = 7e-11
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F + G E++ K GE +R+ FE A + +PSIIFIDE+DAI KR
Sbjct: 210 DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKR 260
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 51.7 bits (124), Expect = 1e-09
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKREL 69
L+ E++ + G+ + + +E A K +P I+FIDELDAIA R +EL
Sbjct: 179 LLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 51.5 bits (124), Expect = 1e-09
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G + + G S +R FE+A KN+P IIFIDE+DA+ +R
Sbjct: 116 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQR 163
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 51.7 bits (124), Expect = 1e-09
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F + G E + K GE +R F A +N+PSIIFIDE+D+IA KR
Sbjct: 205 ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 254
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 51.0 bits (122), Expect = 2e-09
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F + G E++ K GE +R+ FE A + +PSIIFIDE+DAIA KR
Sbjct: 182 ATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR 231
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 50.5 bits (121), Expect = 3e-09
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F + G E++ K G+ +R+ F A++N+PSI+FIDE+DAI KR
Sbjct: 243 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKR 292
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 49.8 bits (120), Expect = 5e-09
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F + G E++ K GE +R+ FE A + +PSIIFIDE+DAIA KR
Sbjct: 190 NATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKR 240
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 47.3 bits (112), Expect = 5e-08
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G + + G S +R FE+A K +P IIFIDE+DA+ +R
Sbjct: 213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 260
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 47.0 bits (112), Expect = 5e-08
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAI 60
++F I GPE+++K GE+E +R F+ A + P I+F DE+D++
Sbjct: 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSL 301
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 45.0 bits (107), Expect = 3e-07
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G E + G + +R F++A +NSP I+FIDE+DA+ +R
Sbjct: 244 FFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQR 291
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 41.5 bits (98), Expect = 5e-06
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G + + G S +R FE+A KN+P IIFIDE+DA+ +R
Sbjct: 211 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQR 258
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 39.4 bits (92), Expect = 1e-05
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 14 GAFFFLINGPEIMSKLAGESE---SNLRKAFEEADKNSPSIIFIDELDAIAPKREKREL 69
GA F +N +++ L +R FE A+K P ++FIDE+D+++ + L
Sbjct: 47 GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL 105
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 36.6 bits (84), Expect = 2e-04
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKREL 69
L+ K +G E LR A A K P ++ +DE+ ++ ++ L
Sbjct: 44 EVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL 99
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 32.3 bits (74), Expect = 0.009
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 28 KLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
K GE E L+ +E +K+ I+FIDE+ I
Sbjct: 242 KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 32.3 bits (74), Expect = 0.010
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 LAGESESNLRKAFEEADKNSPSIIFIDELD 58
+ GESES +R+ A+ SP I++IDE+D
Sbjct: 299 IVGESESRMRQMIRIAEALSPCILWIDEID 328
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 28.5 bits (65), Expect = 0.21
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 51 IIFIDELDAIAPKREKR 67
I+FIDE+D IA +
Sbjct: 252 IVFIDEIDKIAARGGSS 268
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 27.6 bits (62), Expect = 0.39
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 33 SESNLRKAFEEADKNSPSIIFID--ELDAIAPK 63
+SNL++ + E SP+I+F D +LDA A
Sbjct: 224 GQSNLKRVWLECGGKSPNIVFADAPDLDAAAEA 256
>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional.
Length = 446
Score = 27.0 bits (61), Expect = 0.56
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 33 SESNLRKAFEEADKNSPSIIFID 55
+E+NL ++ P ++ ID
Sbjct: 141 AETNLEAILATIEEEKPDLVVID 163
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 27.0 bits (61), Expect = 0.60
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 51 IIFIDELDAIAPKRE 65
I++IDE+D IA K E
Sbjct: 176 IVYIDEIDKIARKSE 190
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction [Protein fate, Protein folding and
stabilization, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 413
Score = 27.0 bits (60), Expect = 0.68
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67
I+ KL ++ ++ KA II+IDE+D I+ K E
Sbjct: 165 ILLKLLQAADYDVEKA-------QKGIIYIDEIDKISRKSENP 200
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 26.8 bits (60), Expect = 0.79
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 51 IIFIDELDAIAPKRE 65
II+IDE+D IA K E
Sbjct: 165 IIYIDEIDKIARKSE 179
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 26.5 bits (59), Expect = 1.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 23 PEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63
E KL + E ++A + A++N I+FIDE+D IA +
Sbjct: 228 EEEADKLI-DQEEIKQEAIDAAEQNG--IVFIDEIDKIAKR 265
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 26.4 bits (58), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 28 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+A + L F+ AD N ++ IDEL A+ ++++E
Sbjct: 211 LVAANKKEEL---FKAADLNGDGVVTIDELAALLALQQEQE 248
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 25.9 bits (57), Expect = 1.5
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 22 GPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 55
G IM A SNL+K E SP IIF D
Sbjct: 239 GKHIMKSCA---VSNLKKVSLELGGKSPLIIFAD 269
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry
includes some of the AAA proteins not detected by the
pfam00004 model.
Length = 168
Score = 25.6 bits (57), Expect = 1.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 42 EEADKNSPSIIFIDELDAIAP 62
E + SI+ IDE++ P
Sbjct: 69 EAVRRKPYSIVLIDEIEKAHP 89
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 25.2 bits (55), Expect = 2.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 24 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65
E +KL + E ++A + +++ IIFIDE+D IA K E
Sbjct: 226 EEAAKLV-DPEEIKQEAIDRVEQSG--IIFIDEIDKIAKKGE 264
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 25.3 bits (56), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 37 LRKAFEEADKNSPS----IIFIDE 56
LR+ EEA KN I+F+DE
Sbjct: 89 LREIIEEARKNRLLGRRTILFLDE 112
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 25.0 bits (55), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 27 SKLAGESESNLRKAFEEADKNSPSIIFIDE 56
+K GE E L++ F+E +N+ I+ IDE
Sbjct: 250 TKYRGEFEERLKRIFDEIQENNNIILVIDE 279
>gnl|CDD|237836 PRK14855, nhaA, pH-dependent sodium/proton antiporter;
Provisional.
Length = 423
Score = 24.8 bits (54), Expect = 3.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 1 MSYRLTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKA 40
+ L D L A FFL+ G EI +L S+ R+A
Sbjct: 59 LDLSLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQA 98
>gnl|CDD|183581 PRK12542, PRK12542, RNA polymerase sigma factor; Provisional.
Length = 185
Score = 25.0 bits (54), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSII 52
+S + G +E+N+RK FE A K ++I
Sbjct: 144 ISSVMGITEANVRKQFERARKRVQNMI 170
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 24.9 bits (55), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 31 GESESNLRKAFEEADKNSPS--IIFIDE 56
GE E+ L+ +E K SP I+FIDE
Sbjct: 262 GEFENRLKSVIDEV-KASPQPIILFIDE 288
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 304
Score = 24.7 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 23 PEIMSKLAGESESNLRKAFEEADKNSPSIIFI 54
PE+ K A ES +++A E AD ++FI
Sbjct: 64 PEVGRKAAEESREEIKEALEGAD-----MVFI 90
>gnl|CDD|225285 COG2429, COG2429, Archaeal GTP cyclohydrolase III [Nucleotide
transport and metabolism].
Length = 250
Score = 24.7 bits (54), Expect = 3.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 13 LGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 48
+GA F + G IM+ G S ++ A E ++
Sbjct: 173 IGALLFFLGGDNIMAVCPGLSAGDVLDAIAEVLDDA 208
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 24.4 bits (53), Expect = 5.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 27 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
+K G+ E + ++ ++++ SI+FIDE+ I
Sbjct: 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290
>gnl|CDD|227140 COG4803, COG4803, Predicted membrane protein [Function unknown].
Length = 170
Score = 24.3 bits (53), Expect = 5.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 20 INGPEIMSKLAGESESNLRKAFEEADKNSPS 50
G + + L+ E E LR A E + +PS
Sbjct: 139 FGGTVLRTSLSKEEEQKLRAALSEGEAPAPS 169
>gnl|CDD|179391 PRK02240, PRK02240, GTP cyclohydrolase III; Provisional.
Length = 254
Score = 24.2 bits (53), Expect = 5.9
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 5 LTTLCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 46
L R + A F + G M+ G SE + A E +
Sbjct: 169 LMRELRKAHDALSFFVGGDNFMAPCPGLSEGDFLDAIEHVRE 210
>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain
of ferredoxin reductase like phenylacetic acid (PA)
degradation oxidoreductase. PA oxidoreductases of E.
coli hydroxylate PA-CoA in the second step of PA
degradation. Members of this group typically fuse a
ferredoxin reductase-like domain with an iron-sulfur
binding cluster domain. Ferredoxins catalyze electron
transfer between an NAD(P)-binding domain of the
alpha/beta class and a discrete (usually N-terminal)
domain which vary in orientation with respect to the
NAD(P) binding domain. The N-terminal portion may
contain a flavin prosthetic group, as in flavoenzymes,
or use flavin as a substrate. Ferredoxin-NADP+
(oxido)reductase is an FAD-containing enzyme that
catalyzes the reversible electron transfer between
NADP(H) and electron carrier proteins such as ferredoxin
and flavodoxin. Isoforms of these flavoproteins (i.e.
having a non-covalently bound FAD as a prosthetic group)
are present in chloroplasts, mitochondria, and bacteria
and participate in a wide variety of redox metabolic
pathways. The C-terminal domain contains most of the
NADP(H) binding residues and the N-terminal domain
interacts non-covalently with the isoalloxazine rings of
the flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 241
Score = 24.0 bits (53), Expect = 6.4
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 29 LAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61
LA E S + + ++ S+IF +EL +
Sbjct: 131 LAREPASRVTLVY--GNRTEASVIFREELADLK 161
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 24.0 bits (53), Expect = 6.5
Identities = 7/17 (41%), Positives = 13/17 (76%), Gaps = 4/17 (23%)
Query: 47 NSPSIIFIDE----LDA 59
++PS++F+DE LD+
Sbjct: 128 SNPSLLFLDEPTSGLDS 144
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 24.2 bits (53), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 23 PEIMSKLAGESESNLRKAFEEAD 45
PEI K A ES +RK E AD
Sbjct: 81 PEIGRKAAEESRDEIRKLLEGAD 103
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 23.9 bits (52), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 37 LRKAFEEADKNSPSIIFIDELDAI 60
L K FEE K IF+D++DAI
Sbjct: 192 LSKRFEELSKLKFDFIFVDDVDAI 215
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.373
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,524,127
Number of extensions: 265476
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 56
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)