RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3868
(69 letters)
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 99.9 bits (249), Expect = 6e-27
Identities = 52/64 (81%), Positives = 57/64 (89%), Gaps = 3/64 (4%)
Query: 6 TTLCR---DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62
T + R + GAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDELDAIAP
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 63 KREK 66
KREK
Sbjct: 312 KREK 315
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 92.5 bits (230), Expect = 3e-24
Identities = 52/64 (81%), Positives = 57/64 (89%), Gaps = 3/64 (4%)
Query: 6 TTLCR---DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 62
T + R + GAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDELDAIAP
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 63 KREK 66
KREK
Sbjct: 312 KREK 315
Score = 79.8 bits (197), Expect = 8e-20
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 81.9 bits (203), Expect = 4e-21
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 12 SLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65
A F + G E++ K GE S ++ F+ A + +PSIIFIDE+DAIA KR
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 78.2 bits (193), Expect = 1e-19
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 14 GAFFFLINGPEIMSKLAGESESN-LRKAFEEADKNSPSIIFIDELDAIAPKRE 65
F I P+ M + ++ ++K F++A K+ S + +D+++ +
Sbjct: 89 NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 76.1 bits (188), Expect = 6e-19
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
G F + GPE+++ GESE +R+ F+ A ++P +IF DE+DA+ P+R
Sbjct: 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR 119
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 76.1 bits (188), Expect = 9e-19
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 68.9 bits (169), Expect = 5e-16
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+ FF ++ +++SK GESE +++ F A +N PSIIFID++DA+ R + E
Sbjct: 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 68.9 bits (169), Expect = 5e-16
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 12 SLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+ + FF I+ +++SK GESE ++ F+ A +N PSIIFIDE+D++ R + E
Sbjct: 69 ANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 67.3 bits (164), Expect = 2e-15
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 8 LCRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKR 67
+ ++ + FF I+ +++SK GESE ++ F+ A +N PSIIFIDE+D++ R +
Sbjct: 187 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 246
Query: 68 E 68
E
Sbjct: 247 E 247
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 67.2 bits (164), Expect = 2e-15
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+ FF ++ +++SK GESE +++ F A +N PSIIFID++DA+ R + E
Sbjct: 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE 163
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 66.0 bits (161), Expect = 4e-15
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 6 TTLCR---DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELD 58
+ C +G +++ E+ S AGE +R+ + EA K + +FI++LD
Sbjct: 50 SFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109
Query: 59 AIAPKR 64
A A +
Sbjct: 110 AGAGRM 115
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 65.0 bits (159), Expect = 1e-14
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
A F I+ + SK G+ E +R F A PSIIFIDE+D++ +R E
Sbjct: 79 SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 64.8 bits (158), Expect = 1e-14
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
GA FF I+ + SK GE E +R F A P++IFIDE+D++ +R E
Sbjct: 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 63.3 bits (154), Expect = 5e-14
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
A FF I+ + SK GE E +R F A + PSIIFID++D++ +R + E
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE 227
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 51.1 bits (123), Expect = 1e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 66
F + G E + + G + +R F+EA +P I++IDE+DA+ KR
Sbjct: 67 FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST 116
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 50.4 bits (121), Expect = 2e-09
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 101 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 49.6 bits (119), Expect = 3e-09
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 77 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 49.6 bits (119), Expect = 3e-09
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF + G + G S +R FE A K +PSIIFIDE+DAI R
Sbjct: 72 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 49.2 bits (118), Expect = 4e-09
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G + + G S +R FE+A K +P IIFIDE+DA+ +R
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 46.4 bits (111), Expect = 5e-08
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
FF I+G + + G + +R F +A ++P I+FIDE+DA+ R
Sbjct: 77 FFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 46.4 bits (111), Expect = 5e-08
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 92 FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.007
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 3 YRLTTLCRD---SLGAFFFLINGPEI---MSKLAGES----ESNLRKAFEEADKNSPSII 52
+ + + + +L F G I S + E+ + K F+E +++S S
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 53 F---IDELDA 59
F L A
Sbjct: 1719 FRSEKGLLSA 1728
Score = 31.6 bits (71), Expect = 0.010
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 19 LINGPEIMSKLAGESES------NLRKAFEEADKNSPSIIF 53
L+NG + + ++G +S LRKA + + I F
Sbjct: 370 LVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Score = 25.0 bits (54), Expect = 2.2
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 26 MSK-LAGESESNLRKAFEEADK 46
M L S++ + + AD
Sbjct: 1631 MGMDLYKTSKA-AQDVWNRADN 1651
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.1 bits (62), Expect = 0.20
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61
M + G + ++ + K S +E A+
Sbjct: 90 MIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVV 125
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.0 bits (63), Expect = 0.21
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 27 SKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+K G+ E + ++ ++++ SI+FIDE+
Sbjct: 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEI 287
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 26.8 bits (60), Expect = 0.35
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
L +S +++KAF D++ I DEL
Sbjct: 33 KVGLTAKSADDIKKAFFVIDQDKSGFIEEDEL 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 27.2 bits (61), Expect = 0.37
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 51 IIFIDELDAIAPKRE 65
I+FIDE+D I+ E
Sbjct: 140 IVFIDEIDKISRLSE 154
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 26.5 bits (59), Expect = 0.40
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+S ++ +S S L++ F D + I DEL
Sbjct: 32 ISGMSKKSSSQLKEIFRILDNDQSGFIEEDEL 63
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 26.8 bits (60), Expect = 0.41
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 51 IIFIDELDAIAPKRE 65
I++ID++D I+ K +
Sbjct: 119 IVYIDQIDKISRKSD 133
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 26.9 bits (59), Expect = 0.43
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKN---SPSIIFIDELDAIAPKREKR 67
F + G E+ S ++E L + F A ++ E+ + P +
Sbjct: 93 FCPMVGSEVYSTEIKKTE-VLMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 26.5 bits (59), Expect = 0.43
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
S L+ S S ++ F D + + DEL
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDEL 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 26.9 bits (60), Expect = 0.50
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 51 IIFIDELDAIAPKREKR 67
I+FIDE+D I K E
Sbjct: 119 IVFIDEIDKICKKGEYS 135
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 26.2 bits (58), Expect = 0.70
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 8 LCRDSLGAFFFLINGPEI--MSKLAGESESNLRKAFEE---ADKNSPSIIF 53
C D+LG + EI ++++ G N + E N PSI
Sbjct: 349 RC-DTLG--LIIWA--EIPCVNRVTGYETENAQSQLRELIRQSFNHPSIYV 394
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 26.1 bits (58), Expect = 0.71
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
L+ ++ ++K F D++ I +EL
Sbjct: 33 TVGLSSKTPDQIKKVFGILDQDKSGFIEEEEL 64
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 25.6 bits (57), Expect = 0.81
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
LA +S +++KAF D++ I DEL
Sbjct: 32 KVGLASKSLDDVKKAFYVIDQDKSGFIEEDEL 63
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 26.2 bits (58), Expect = 0.87
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ ++ E+ + AF + D++ ++ +D+L
Sbjct: 99 LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL 131
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 25.4 bits (56), Expect = 0.91
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63
+ GE + LR F D N + +E A+ +
Sbjct: 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTE 55
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 25.6 bits (57), Expect = 0.93
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ L G++++ +++ FE DK+ I +EL
Sbjct: 32 LVGLKGKTDAQVKEVFEILDKDQSGFIEEEEL 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 25.6 bits (57), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 SKLAGESESNLRKAFEEADKNSPSIIFIDE-LDA 59
+K GE E L+K +E + I+FID +DA
Sbjct: 246 TKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDA 279
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 25.2 bits (56), Expect = 1.4
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ L S ++++K F+ D ++ I +EL
Sbjct: 33 LVGLKAMSANDVKKVFKAIDADASGFIEEEEL 64
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 25.3 bits (56), Expect = 1.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
M L +S +++K F DK+ I DEL
Sbjct: 31 QMVGLKKKSADDVKKVFHILDKDKSGFIEEDEL 63
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 24.7 bits (54), Expect = 2.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 43 EADKNSPSIIF 53
+ D+N PSII
Sbjct: 380 KRDRNHPSIIM 390
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 24.7 bits (54), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
SE LR+AF D + I +EL
Sbjct: 432 FSEERLRRAFNLFDTDKSGKITKEEL 457
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 24.2 bits (53), Expect = 3.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ + L+ AF + DK+ I ++
Sbjct: 98 GCYRWKNIESTFLKAAFNKIDKDEDGYISKSDI 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 24.3 bits (52), Expect = 3.9
Identities = 7/56 (12%), Positives = 21/56 (37%)
Query: 13 LGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREKRE 68
+ + + ++ + ++ + + +N SI+ +DE + P R
Sbjct: 52 IPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGS 107
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 24.1 bits (53), Expect = 4.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61
F ++ ++ G+SE L F DKN+ I I+EL I
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEIL 122
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 24.0 bits (53), Expect = 4.2
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 18 FLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
F I + + + L+ ++ D + + +E+
Sbjct: 58 FAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 23.8 bits (52), Expect = 5.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
M K S L AF++ D + I +EL
Sbjct: 114 MDKQLLLSRERLLAAFQQFDSDGSGKITNEEL 145
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 24.0 bits (52), Expect = 5.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
+ L G E L+ F+ DK+ I EL I
Sbjct: 85 LNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDI 120
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 23.8 bits (52), Expect = 5.7
Identities = 2/33 (6%), Positives = 10/33 (30%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ S+ + + + + + I +
Sbjct: 372 LWSRNSKPVHTTILNPHIHLMGDESACIAYIRI 404
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 23.9 bits (52), Expect = 5.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 IMSKLAGESE-SNLRKAFEEADKNSPSIIFIDEL 57
+ SKL + E L F + DKN + EL
Sbjct: 324 MGSKLTSQDETKELTAIFHKMDKNGDGQLDRAEL 357
Score = 23.5 bits (51), Expect = 7.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
S L +AF D ++ I EL
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTEL 440
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 23.9 bits (52), Expect = 6.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
S+ L AF++ D++ I +DEL
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDEL 448
Score = 23.1 bits (50), Expect = 9.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 IMSKLAGESE-SNLRKAFEEADKNSPSIIFIDEL 57
+ SKL + E L F DKN + EL
Sbjct: 335 MASKLTSQEETKELTDIFRHIDKNGDGQLDRQEL 368
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 23.7 bits (52), Expect = 6.3
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ K + F+ D + I ++EL
Sbjct: 120 IDKQTYLKKEVCLIPFKFFDIDGNGKISVEEL 151
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 22.9 bits (50), Expect = 6.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 29 LAGESESNLRKAFEEADKNSPSIIFIDEL 57
+ + E + +AF+ D N +I DE
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEF 30
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 23.4 bits (50), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 37 LRKAFEEADKNSPSIIFIDEL 57
L +A+ EA K+ +I IDE+
Sbjct: 88 LERAYREAKKDRRKVIIIDEI 108
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 23.3 bits (51), Expect = 7.6
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 24 EIMSKLAGESESN----LRKAFEEADKNSPSIIFIDEL 57
++ +A + F DK + EL
Sbjct: 72 PMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAEL 109
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 23.3 bits (50), Expect = 7.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
+S K + + D + I +EL
Sbjct: 100 KSCEEFMKTWRKYDTDHSGFIETEEL 125
Score = 23.3 bits (50), Expect = 8.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
+ + KAFE D++ I +ELDA+
Sbjct: 181 LKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDAL 216
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 23.2 bits (50), Expect = 8.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 49
FL+ PE ++ + GE ES L +A + + +
Sbjct: 285 LLLFLLKNPEALAAVRGELESILWQAEQPVSQTTT 319
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 23.1 bits (50), Expect = 8.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
S + +AF+ DK+ I EL
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKEL 439
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 23.2 bits (49), Expect = 9.1
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIF 53
+ ++ + LR AF +A+K +P +
Sbjct: 26 LERVNLSAAQTLRAAFIKAEKENPGLTQ 53
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 23.1 bits (49), Expect = 9.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDEL 57
++ K + + D +S I EL
Sbjct: 101 DNSVEFMKIWRKYDADSSGYISAAEL 126
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 22.9 bits (50), Expect = 9.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 17 FFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 61
F ++ + G+SE L F DKN+ I ++EL +
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIML 121
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 22.8 bits (50), Expect = 9.5
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDELDAIA 61
+++ + KAF+ D + I L +A
Sbjct: 76 DTKEEILKAFKLFDDDETGKISFKNLKRVA 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.373
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 991,914
Number of extensions: 45791
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 107
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)