RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3868
(69 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 71.8 bits (176), Expect = 7e-18
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1 MSYRLTTLCR---DSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
T L + FF I+G + + G S +R FE+A K +P IIFIDE+
Sbjct: 54 PGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI 113
Query: 58 DAIAPKRE 65
DA+ +R
Sbjct: 114 DAVGRQRG 121
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 71.0 bits (174), Expect = 2e-17
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 12 SLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65
F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 118
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 51.6 bits (123), Expect = 3e-10
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 14 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 64
+ + E +S + + + +I ID L +
Sbjct: 150 KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAA 198
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 43.9 bits (102), Expect = 2e-07
Identities = 49/57 (85%), Positives = 53/57 (92%)
Query: 9 CRDSLGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 65
+ GAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDELDAIAPKRE
Sbjct: 58 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 114
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 35.8 bits (82), Expect = 1e-04
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 6 TTLCR---DSLGAFFFLINGPEIMSK-LAGESESNLRKAFEEAD------KNSPSIIFID 55
TTL + G +N P G + FE+ ++ PS I+
Sbjct: 168 TTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGIN 227
Query: 56 ELDAIAPKRE 65
LD + +
Sbjct: 228 NLDNLRDYLD 237
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 108
Score = 27.2 bits (60), Expect = 0.085
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63
S L+ S S ++ F D + + DEL K
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK 69
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 107
Score = 27.2 bits (60), Expect = 0.099
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
LA +S +++KAF D++ I DEL
Sbjct: 31 KVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLF 65
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis
semifasciata) [TaxId: 30493]}
Length = 109
Score = 26.5 bits (58), Expect = 0.16
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63
+ L G++++ +++ FE DK+ I +EL +
Sbjct: 32 LVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG 69
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId:
10117]}
Length = 109
Score = 26.1 bits (57), Expect = 0.28
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
M L +S +++K F DK+ I DEL +I
Sbjct: 32 MVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSI 66
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 24.9 bits (54), Expect = 0.53
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 31 GESESNLRKAFEEADKNSPSIIFIDEL 57
G+SE L F DKN+ I I+EL
Sbjct: 5 GKSEEELANCFRIFDKNADGFIDIEEL 31
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 24.9 bits (54), Expect = 0.61
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 26 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 60
+ L S ++++K F+ D ++ I +EL +
Sbjct: 32 LVGLKAMSANDVKKVFKAIDADASGFIEEEELKFV 66
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 24.8 bits (53), Expect = 0.85
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 47 NSPSIIFIDELDAIAPKRE 65
I+FIDE+D I K E
Sbjct: 114 EQNGIVFIDEIDKICKKGE 132
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like
protein {Leishmania major [TaxId: 5664]}
Length = 182
Score = 23.8 bits (50), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 32 ESESNLRKAFEEADKNSPSIIFIDELDAI 60
L + F D + I + EL+A
Sbjct: 15 NDNQELMEWFRAVDTDGSGAISVPELNAA 43
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 23.5 bits (49), Expect = 2.5
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 31 GESESNLRKAFEEADKNSPSIIFIDELDAIAPK 63
+ L+K F+ D + + + + A
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQH 35
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 181
Score = 23.5 bits (49), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 22 GPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
GP + A +S L F+ DK+ +I +EL
Sbjct: 6 GPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNEL 41
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens),
cardiac isoform [TaxId: 9606]}
Length = 33
Score = 22.2 bits (48), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 33 SESNLRKAFEEADKNSPSIIFIDEL 57
SE +R+AF DK+ I EL
Sbjct: 1 SEEEIREAFRVFDKDGNGYISAAEL 25
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa
(Obelia longissima), obelin [TaxId: 32570]}
Length = 189
Score = 23.4 bits (49), Expect = 3.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 37 LRKAFEEADKNSPSIIFIDELDAIAPKREKREL 69
+ F+ D N I +DE+ + A +L
Sbjct: 16 HKHMFDFLDINGNGKITLDEIVSKASDDICAKL 48
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 23.1 bits (48), Expect = 3.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 27 SKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
+L+ E L++ F+ D ++ I DEL
Sbjct: 2 ERLSEEEIGGLKELFKMIDTDNSGTITFDEL 32
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 22.9 bits (49), Expect = 4.1
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 15 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 49
A F L + + +A E+ S EE + P
Sbjct: 291 AIFALAQIEQEL--IAPENRSGCLAVIEEVMLDEP 323
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),
cardiac isoform [TaxId: 9031]}
Length = 81
Score = 22.2 bits (47), Expect = 4.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 30 AGESESNLRKAFEEADKNSPSIIFIDE 56
G++E L F DKN+ I ++E
Sbjct: 10 KGKTEEELSDLFRMFDKNADGYIDLEE 36
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 67
Score = 22.2 bits (47), Expect = 4.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 35 SNLRKAFEEADKNSPSIIFIDEL 57
S+ ++ FE+ DKN + +DE
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEF 23
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 22.4 bits (46), Expect = 5.8
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 37 LRKAFEEADKNSPSIIFIDELDAI 60
+ F DK I D L
Sbjct: 4 NKDIFTLFDKKGQGAIAKDSLGDY 27
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein
{Jellyfish (Aequorea aequorea), aequorin [TaxId:
168712]}
Length = 187
Score = 22.2 bits (46), Expect = 7.3
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 37 LRKAFEEADKNSPSIIFIDELDAIAPKREKREL 69
+ F D N I +DE+ A L
Sbjct: 14 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNL 46
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 21.6 bits (45), Expect = 7.9
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 24 EIMSKL---AGESESNLRKAFEEADKN 47
+I+++L + + FE D
Sbjct: 6 DILARLHKAVTSHYHAITQEFENFDTM 32
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 156
Score = 22.2 bits (46), Expect = 8.1
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 25 IMSKLAGESESNLRKAFEEADKNSPS 50
+ +L E ++ + AF+ +
Sbjct: 4 AVEQLTEEQKNEFKAAFDIFVLGAED 29
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces
pombe) [TaxId: 4896]}
Length = 140
Score = 21.9 bits (45), Expect = 9.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 34 ESNLRKAFEEADKNSPSIIFIDEL 57
+S ++AF D++ I +
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTSI 27
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 22.0 bits (45), Expect = 9.5
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 24 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 57
E+ S + L K F++ D ++ + ++E
Sbjct: 5 EMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEF 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.373
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 235,485
Number of extensions: 8329
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 44
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)