BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3869
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1
SV=2
Length = 1273
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 112/181 (61%), Gaps = 23/181 (12%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++ + +
Sbjct: 965 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1024
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKK--DCKLTIELLDT 118
L E+ GATGG T + R LE YQ+K+E M+DENCFK++ + +LTIELLDT
Sbjct: 1025 LAENNNGATGGQLNTQNSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDT 1084
Query: 119 ESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPK 178
E E+N +D E +E+WS Y E T+P E L +
Sbjct: 1085 E------EENSDDPVE---------------AERWSDYVERYMNSDTTSPELREHLAQKP 1123
Query: 179 V 179
V
Sbjct: 1124 V 1124
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1
SV=3
Length = 1274
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 23/181 (12%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++ + +
Sbjct: 966 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEVCVQVTDLY 1025
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKK--DCKLTIELLDT 118
L E+ GATGG + R LE YQ+K+E M+DENCFK++ + +LT+ELLDT
Sbjct: 1026 LAENNNGATGGQLNSQTSRSLLESAYQRKAEQLMSDENCFKLMFIQSQGQVQLTVELLDT 1085
Query: 119 ESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPK 178
E E+N +D E +E+WS Y E T+P E L +
Sbjct: 1086 E------EENSDDPVE---------------AERWSDYVERYMSSDTTSPELREHLAQKP 1124
Query: 179 V 179
V
Sbjct: 1125 V 1125
>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B
PE=1 SV=2
Length = 1162
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
MV+++L+G+++ YEDTLRE+F IHAY+ FT+DK+V N RQL HLVSD+ C++ E +
Sbjct: 854 MVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELY 913
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCK--LTIELLDT 118
L E K+GA GG + R E YQ K+E M DENCFK++ ++ + +TIELLDT
Sbjct: 914 LNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDT 973
Query: 119 ESSDNE 124
E + E
Sbjct: 974 EEAQTE 979
>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b
PE=1 SV=2
Length = 1098
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
MV+++L+G+++ YEDTLRE+F IHAYI FT+DK+V N RQL HLVSD+ C++ E +
Sbjct: 791 MVRSLLEGSIDPTQYEDTLREMFTIHAYIGFTMDKLVQNIARQLHHLVSDDVCLKVVELY 850
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCK--LTIELLDT 118
L E ++GA GG + R E YQ K+E M DENCFK++ ++ + +TIELLDT
Sbjct: 851 LNEQQRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRRGQVIMTIELLDT 910
Query: 119 ESSDNE 124
E + E
Sbjct: 911 EEAQTE 916
>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana
GN=SNL1 PE=1 SV=2
Length = 1372
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET---CIECY 57
++ +LDG+ E+ +ED R + G +Y+ FTLDK++ V+QLQ +V+DE ++ Y
Sbjct: 1152 VLYGLLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLY 1211
Query: 58 ETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLD 117
E + K K G RV ++ Y + V + +EN +++ +L+I+L+D
Sbjct: 1212 E-YEKSRKPG-----------RV-IDSVYYENVRVLVHEENIYRLECSSLPSRLSIQLMD 1258
>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana
GN=SNL6 PE=3 SV=2
Length = 1173
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 20/120 (16%)
Query: 4 NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET-----CIECYE 58
N+LDG++++ +ED R +FG +Y+ FTLDK+V V+ L + SDET + YE
Sbjct: 944 NLLDGSIDNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHSVASDETDTKLLQLHAYE 1003
Query: 59 TFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDT 118
+ K K + Y + + + + N ++I + +L+I+L+++
Sbjct: 1004 NYRKPGK---------------FFDLVYHENACALLHEANIYRIRYSSEGTRLSIQLMNS 1048
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana
GN=SNL3 PE=1 SV=3
Length = 1330
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 4 NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
N+LDG ++ +ED R + G +YI FTLDK++ ++ LQ +V+DE + + + E
Sbjct: 1108 NLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLIHKFIKHLQVVVADEMDNKLLQLYFYE 1167
Query: 64 SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKI-IIFKKDCKLTIELL 116
+ ET V Y + V + DEN ++I KL+I+L+
Sbjct: 1168 KSRRP-----ETIFDAV-----YYDNTRVLLPDENIYRIECRLSTPAKLSIQLM 1211
>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana
GN=SNL5 PE=2 SV=3
Length = 1162
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 4 NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
N+LDG+ ++ +ED R + G +Y+ FTLDK+V V+ L + +DET + + + E
Sbjct: 922 NLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHLHAVAADETDTKLLQLYAYE 981
Query: 64 SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDT 118
+ + G + Y + + + D+N ++I +L I+L+++
Sbjct: 982 NYR-KPGRFFDIV---------YHENARALLHDQNIYRIEYSSAQTRLGIQLMNS 1026
>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana
GN=SNL4 PE=3 SV=3
Length = 1326
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 21/120 (17%)
Query: 4 NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
N+LDG +++ +ED R + G +Y+ FTLDK++ ++ LQ + +DE + + + E
Sbjct: 1094 NLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIKHLQAVAADEMDNKLQQLYAYE 1153
Query: 64 SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDC------KLTIELLD 117
+ L+ Y + + V + DE+ ++I +C KL+I+LLD
Sbjct: 1154 KSRKPEK----------FLDAVYYENALVLLPDEDIYRI-----ECEQSTPSKLSIQLLD 1198
>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana
GN=SNL2 PE=1 SV=2
Length = 1367
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 65/117 (55%), Gaps = 16/117 (13%)
Query: 4 NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET---CIECYETF 60
++L+G+ E++ +ED R + G +Y+ FTL+K++ V+QLQ +V+D+ ++ YE
Sbjct: 1141 SLLNGSAENSKFEDECRAIIGNQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYE-- 1198
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLD 117
+ S++ RV + Y + + + + +EN +++ +L+I+L+D
Sbjct: 1199 YENSRRPG----------RV-FDSVYYENARILLHEENIYRLECSSSPSRLSIQLMD 1244
>sp|Q09750|PST1_SCHPO Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst1 PE=1 SV=1
Length = 1522
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 42/63 (66%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
+ + +++G ++ N +ED LR L+GIHA+ +T++K+V++ ++QL + ++ + + +
Sbjct: 1077 LCERLMEGEIDQNGFEDALRCLYGIHAFRLYTVEKLVTSIIKQLHSVTTNRRLAQVFMYY 1136
Query: 61 LKE 63
K+
Sbjct: 1137 EKD 1139
>sp|O13919|PST2_SCHPO Paired amphipathic helix protein pst2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst2 PE=1 SV=1
Length = 1075
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSD 50
M+ ++ G ++ +++ED LR +G AY +T+DK+V +A +Q+ H+VSD
Sbjct: 815 MILRLIYGIVDQSAFEDYLRFYYGNKAYKIYTIDKLVWSAAKQVHHIVSD 864
>sp|P22579|SIN3_YEAST Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIN3 PE=1 SV=2
Length = 1536
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
+ + +++G++E +E++LR+ + A+ +T+DK+ + V+ L++D E F
Sbjct: 1210 LSRRLINGDLEHQWFEESLRQAYNNKAFKLYTIDKVTQSLVKHAHTLMTDAKTAEIMALF 1269
Query: 61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
+K+ T + ++ Q +S ++ T EN F+I K+ ++I+ +
Sbjct: 1270 VKDRNASTTSAKDQIIYR-------LQVRSHMSNT-ENMFRIEFDKRTLHVSIQYI 1317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,597,665
Number of Sequences: 539616
Number of extensions: 3651910
Number of successful extensions: 52250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 877
Number of HSP's that attempted gapping in prelim test: 25259
Number of HSP's gapped (non-prelim): 12518
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 58 (26.9 bits)