Query psy3869
Match_columns 203
No_of_seqs 141 out of 209
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:30:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf6_C Maguk P55 subfamily mem 23.4 76 0.0026 22.1 3.3 28 33-61 16-43 (72)
2 1r4g_A RNA polymerase alpha su 19.3 83 0.0028 20.6 2.6 28 38-65 22-49 (53)
3 2dgt_A RNA-binding protein 30; 17.8 87 0.003 20.8 2.7 43 3-45 11-65 (92)
4 2dnq_A RNA-binding protein 4B; 15.9 1.1E+02 0.0037 20.2 2.8 44 3-46 9-64 (90)
5 3epy_A Acyl-COA-binding domain 15.1 1.4E+02 0.0048 21.1 3.4 34 32-65 3-36 (89)
6 1x4a_A Splicing factor, argini 14.8 1.4E+02 0.0048 20.4 3.3 24 3-26 23-46 (109)
7 2dnp_A RNA-binding protein 14; 14.5 1.2E+02 0.004 20.0 2.7 44 3-46 10-65 (90)
8 2e5g_A U6 snRNA-specific termi 14.4 63 0.0022 21.6 1.3 28 3-30 9-36 (94)
9 1fjc_A Nucleolin RBD2, protein 13.7 1.6E+02 0.0055 19.4 3.3 43 3-45 17-74 (96)
10 1x4c_A Splicing factor, argini 13.0 1.4E+02 0.0047 20.5 2.8 24 3-26 16-39 (108)
No 1
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=23.41 E-value=76 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhHhhcccchHHHHHHHH
Q psy3869 33 LDKIVSNAVRQLQHLVSDETCIECYETFL 61 (203)
Q Consensus 33 iDKLI~~lvKqlq~ivsD~~s~ell~Lf~ 61 (203)
|+.|+++ +|++|++.+|..+++=+.|..
T Consensus 16 lEel~sS-LK~iq~~L~DsQSQeDi~lll 43 (72)
T 1vf6_C 16 VEDLFSS-LKHIQHTLVDSQSQEDISLLL 43 (72)
T ss_dssp HHHHHHH-HHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhhhhhhHHHHHHHH
Confidence 5666665 599999999988877544443
No 2
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=19.28 E-value=83 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.3
Q ss_pred HHHHHhhhHhhcccchHHHHHHHHHHhh
Q psy3869 38 SNAVRQLQHLVSDETCIECYETFLKESK 65 (203)
Q Consensus 38 ~~lvKqlq~ivsD~~s~ell~Lf~~eR~ 65 (203)
++-||-|..|-+|+.-.++|++|..+-.
T Consensus 22 ~sYi~~L~~CktdqEV~~~Memf~EDi~ 49 (53)
T 1r4g_A 22 AAYVKSLSKCKTDQEVKAVMELVEEDIE 49 (53)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 5678889999999999999999988654
No 3
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.82 E-value=87 Score=20.75 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=28.9
Q ss_pred hccccCCCCchhhHHHHHHhhccc------------eeeeeeHHHHHHHHHHhhh
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGIH------------AYIAFTLDKIVSNAVRQLQ 45 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~------------AY~LfTiDKLI~~lvKqlq 45 (203)
..|+-|+|....=|+.||.+|... ||+-|.=-.-....++.++
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhC
Confidence 356778888888999999999874 5555554344444444443
No 4
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.89 E-value=1.1e+02 Score=20.18 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=29.3
Q ss_pred hccccCCCCchhhHHHHHHhhccc------------eeeeeeHHHHHHHHHHhhhH
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGIH------------AYIAFTLDKIVSNAVRQLQH 46 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~------------AY~LfTiDKLI~~lvKqlq~ 46 (203)
.+|+-|+|....=|+.||.+|... ||+-|.=-.-....++.++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcC
Confidence 457778899899999999999874 45555444444444444443
No 5
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=15.12 E-value=1.4e+02 Score=21.10 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=25.5
Q ss_pred eHHHHHHHHHHhhhHhhcccchHHHHHHHHHHhh
Q psy3869 32 TLDKIVSNAVRQLQHLVSDETCIECYETFLKESK 65 (203)
Q Consensus 32 TiDKLI~~lvKqlq~ivsD~~s~ell~Lf~~eR~ 65 (203)
+++..+...+..+..+.......++|.||...+.
T Consensus 3 ~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQ 36 (89)
T 3epy_A 3 ALQADFDRAAEDVRKLKARPDDGELKELYGLYKQ 36 (89)
T ss_dssp HHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH
Confidence 4677788888888888777777777777777665
No 6
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=14.82 E-value=1.4e+02 Score=20.37 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.8
Q ss_pred hccccCCCCchhhHHHHHHhhccc
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGIH 26 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~ 26 (203)
..|+-|+|....=|+.||.+|...
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~ 46 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKY 46 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc
Confidence 357778898888999999999764
No 7
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.48 E-value=1.2e+02 Score=19.99 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=29.8
Q ss_pred hccccCCCCchhhHHHHHHhhcc------------ceeeeeeHHHHHHHHHHhhhH
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGI------------HAYIAFTLDKIVSNAVRQLQH 46 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~------------~AY~LfTiDKLI~~lvKqlq~ 46 (203)
..|+-|+|....=|+.||.+|.. .||+-|.=-.-....++.++.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCC
Confidence 35677888888889999999876 456666544445555554443
No 8
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.36 E-value=63 Score=21.64 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.1
Q ss_pred hccccCCCCchhhHHHHHHhhccceeee
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGIHAYIA 30 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~AY~L 30 (203)
.+|+-|+|....=|+.||.+|...+-+.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~ 36 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVA 36 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeE
Confidence 4678899999999999999998766443
No 9
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=13.69 E-value=1.6e+02 Score=19.41 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=29.3
Q ss_pred hccccCCCCchhhHHHHHHhhcc---------------ceeeeeeHHHHHHHHHHhhh
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGI---------------HAYIAFTLDKIVSNAVRQLQ 45 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~---------------~AY~LfTiDKLI~~lvKqlq 45 (203)
..|+-|+|....=|+.||.+|.. .||+-|.=-.-....++.++
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 35777899988999999999975 35666654444444444443
No 10
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=12.95 E-value=1.4e+02 Score=20.53 Aligned_cols=24 Identities=8% Similarity=0.107 Sum_probs=19.9
Q ss_pred hccccCCCCchhhHHHHHHhhccc
Q psy3869 3 KNVLDGNMESNSYEDTLRELFGIH 26 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~ 26 (203)
.+|+-|+|....=|+.|+.+|...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~ 39 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREA 39 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc
Confidence 467788999889999999999744
Done!