RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3869
         (203 letters)



>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
           di-tetraheme cytochrome c3 [TaxId: 879]}
          Length = 106

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 26  HAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQ 78
           H        +       +  H  S+ +C  C++    ++++    G  +  H+
Sbjct: 56  HIDRDDRSYER---GFYKAWHSESEISCRGCHKAMKAKNEQTGPIGCLQGCHE 105


>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain
           {Micromonospora viridifaciens [TaxId: 1881]}
          Length = 142

 Score = 24.1 bits (51), Expect = 9.2
 Identities = 7/44 (15%), Positives = 14/44 (31%)

Query: 110 KLTIELLDTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKW 153
           +++I  +D+E +  E     N  D +     H            
Sbjct: 3   RMSIADVDSEETAREDGRASNVIDGNPSTFWHTEWSRADAPGYP 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,087
Number of extensions: 28784
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 7
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (23.6 bits)