Query psy3870
Match_columns 203
No_of_seqs 141 out of 209
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 19:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3870.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3870hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 45.2 10 0.00076 23.0 3.3 30 33-63 5-34 (51)
2 d1r4ga_ a.8.5.1 (A:) RNA polym 31.1 17 0.0012 22.3 2.6 28 38-65 22-49 (53)
3 d1l3ka2 d.58.7.1 (A:103-181) N 27.4 11 0.00077 23.5 1.2 28 2-29 2-29 (79)
4 d1kl9a1 a.60.14.1 (A:89-182) E 24.7 38 0.0028 23.1 3.9 32 31-62 13-44 (94)
5 d2msta_ d.58.7.1 (A:) Neural R 16.9 21 0.0015 21.6 1.0 24 4-27 1-24 (75)
6 d1wf0a_ d.58.7.1 (A:) TAR DNA- 16.6 23 0.0017 22.5 1.2 25 3-27 6-30 (88)
7 d1z3da1 d.20.1.1 (A:2-150) Ubi 15.7 71 0.0051 22.3 3.9 32 30-65 98-134 (149)
8 d1dbwa_ c.23.1.1 (A:) Transcri 15.3 75 0.0055 21.1 3.8 41 6-48 81-123 (123)
9 d1t33a2 a.121.1.1 (A:89-220) P 14.9 1.5E+02 0.011 20.5 5.5 34 33-66 7-40 (132)
10 d1fxla2 d.58.7.1 (A:119-203) H 14.7 29 0.0021 21.8 1.3 24 4-27 8-31 (85)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.18 E-value=10 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhHhhcccchHHHHHHHHHH
Q psy3870 33 LDKIVSNAVRQLQHLVSDETCIECYETFLKE 63 (203)
Q Consensus 33 iDKLI~~lvKqlq~ivsD~~s~ell~Lf~~e 63 (203)
+..|+.+ +||+||+..|..|++=+.|...-
T Consensus 5 ~edl~~s-lK~iqh~LvDsQSQeDi~l~lqL 34 (51)
T d1vf6c_ 5 VEDLFSS-LKHIQHTLVDSQSQEDISLLLQL 34 (51)
T ss_dssp HHHHHHH-HHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhhcccchHHHHHHHHHH
Confidence 4556655 59999999999999877766553
No 2
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=31.07 E-value=17 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHhhhHhhcccchHHHHHHHHHHhh
Q psy3870 38 SNAVRQLQHLVSDETCIECYETFLKESK 65 (203)
Q Consensus 38 ~~lvKqlq~ivsD~~s~ell~Lf~~eR~ 65 (203)
++-+|-|.+|-+|+.-.++|+||..+-.
T Consensus 22 ~aYi~~L~~Cktd~EV~evMdlf~EDi~ 49 (53)
T d1r4ga_ 22 AAYVKSLSKCKTDQEVKAVMELVEEDIE 49 (53)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5778999999999999999999998754
No 3
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.36 E-value=11 Score=23.51 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.7
Q ss_pred hhccccCCCCchhhHHHHHHhhccceee
Q psy3870 2 VKNVLDGNMESNSYEDTLRELFGIHAYI 29 (203)
Q Consensus 2 ~~~LldG~iD~~~FED~lR~~fg~~AY~ 29 (203)
+++|+-|+|..+.=|+.||.+|...|-+
T Consensus 2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i 29 (79)
T d1l3ka2 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKI 29 (79)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCE
T ss_pred CCEEEECCCCCcCCHHHHHHHHHHhccc
Confidence 4788999999999999999999987744
No 4
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.65 E-value=38 Score=23.08 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.9
Q ss_pred eeHHHHHHHHHHhhhHhhcccchHHHHHHHHH
Q psy3870 31 FTLDKIVSNAVRQLQHLVSDETCIECYETFLK 62 (203)
Q Consensus 31 fTiDKLI~~lvKqlq~ivsD~~s~ell~Lf~~ 62 (203)
|+==|.|.+|+||+.....=.....|=+||++
T Consensus 13 y~KsK~VhSIlRhVAe~~~~~~~~~lE~LY~~ 44 (94)
T d1kl9a1 13 FTKSKTVYSILRHVAEVLEYTKDEQLESLFQR 44 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccHHHHHHH
Confidence 34458999999999888765555677777765
No 5
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.90 E-value=21 Score=21.62 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=20.6
Q ss_pred ccccCCCCchhhHHHHHHhhccce
Q psy3870 4 NVLDGNMESNSYEDTLRELFGIHA 27 (203)
Q Consensus 4 ~LldG~iD~~~FED~lR~~fg~~A 27 (203)
+|+-|+|..+.=|+.||.+|...+
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G 24 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFG 24 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999998875
No 6
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.58 E-value=23 Score=22.50 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.5
Q ss_pred hccccCCCCchhhHHHHHHhhccce
Q psy3870 3 KNVLDGNMESNSYEDTLRELFGIHA 27 (203)
Q Consensus 3 ~~LldG~iD~~~FED~lR~~fg~~A 27 (203)
.+|+-|+|....=|+.||.+|...+
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G 30 (88)
T d1wf0a_ 6 SGVFVGRCTGDMTEDELREFFSQYG 30 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 4678899999999999999999876
No 7
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}
Probab=15.67 E-value=71 Score=22.28 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=18.4
Q ss_pred eeeHHHHHHHHHHhhhHhhc-----ccchHHHHHHHHHHhh
Q psy3870 30 AFTLDKIVSNAVRQLQHLVS-----DETCIECYETFLKESK 65 (203)
Q Consensus 30 LfTiDKLI~~lvKqlq~ivs-----D~~s~ell~Lf~~eR~ 65 (203)
.+||-.|+.+ ++.++. +....+...+|..+|.
T Consensus 98 ~~~i~~il~~----i~~ll~~p~~~~p~n~eaa~~~~~~~~ 134 (149)
T d1z3da1 98 TYDVAAILTS----IQSLLDEPNPNSPANSLAAQLYQENRR 134 (149)
T ss_dssp TCCHHHHHHH----HHHTTSSCCCSSCSCHHHHHHHHHCHH
T ss_pred CCCHHHHHHH----HHHHhCCCCCCChhhHHHHHHHHHHHH
Confidence 3565555554 444544 4556777777776554
No 8
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=15.26 E-value=75 Score=21.07 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=28.2
Q ss_pred ccCCCCchhhHHHHHHhhccceeee--eeHHHHHHHHHHhhhHhh
Q psy3870 6 LDGNMESNSYEDTLRELFGIHAYIA--FTLDKIVSNAVRQLQHLV 48 (203)
Q Consensus 6 ldG~iD~~~FED~lR~~fg~~AY~L--fTiDKLI~~lvKqlq~iv 48 (203)
+.|.-+......+++ .|..+|+. |+.+.|+.+|-|.++|++
T Consensus 81 lt~~~~~~~~~~a~~--~Ga~~yl~KP~~~~~L~~~i~~a~e~lv 123 (123)
T d1dbwa_ 81 ITGHGDVPMAVEAMK--AGAVDFIEKPFEDTVIIEAIERASEHLV 123 (123)
T ss_dssp EECTTCHHHHHHHHH--TTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred EEeeCCHHHHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHhhC
Confidence 455555555555554 36677776 888999988888887764
No 9
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=14.87 E-value=1.5e+02 Score=20.46 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhHhhcccchHHHHHHHHHHhhc
Q psy3870 33 LDKIVSNAVRQLQHLVSDETCIECYETFLKESKK 66 (203)
Q Consensus 33 iDKLI~~lvKqlq~ivsD~~s~ell~Lf~~eR~~ 66 (203)
++.++-..|+++-.+++.+.+.....++.+|...
T Consensus 7 ~~~~l~~~~~~m~~l~~~~~~~~~~~l~~RE~~~ 40 (132)
T d1t33a2 7 IRELILLACKNMIMLLTQEDTVNLSKFISREQLS 40 (132)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHccC
Confidence 6788999999999999999999999999999974
No 10
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.72 E-value=29 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred ccccCCCCchhhHHHHHHhhccce
Q psy3870 4 NVLDGNMESNSYEDTLRELFGIHA 27 (203)
Q Consensus 4 ~LldG~iD~~~FED~lR~~fg~~A 27 (203)
+|+-|+|....=|+.||.+|+..|
T Consensus 8 ~lfV~nLp~~~te~~L~~~F~~~G 31 (85)
T d1fxla2 8 NLYVSGLPKTMTQKELEQLFSQYG 31 (85)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhC
Confidence 577889999999999999998765
Done!