RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3870
         (203 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 8   GNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET 52
           GN  ++ Y + LR+L+    Y    +  ++  +   L  L+    
Sbjct: 164 GN--TDDYFEELRDLY--QTYHVL-VGDLIKFSAETLSELIRTTL 203



 Score = 31.2 bits (70), Expect = 0.26
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 29/125 (23%)

Query: 14   SYEDTLRELF--GIHAYIAFTLDKI-VSN----AVRQLQHLVSDETCIECYETFLKESKK 66
            S E  +  +F  G+   +A   D++  SN    A+   +  V+     E  +  ++   K
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGK 1835

Query: 67   GATGGLCETA------HQRV---HLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLD 117
              TG L E         Q V    L       + V     N  K+    +   + IEL  
Sbjct: 1836 -RTGWLVEIVNYNVENQQYVAAGDLR-ALDTVTNVL----NFIKL----QKIDI-IELQK 1884

Query: 118  TESSD 122
            + S +
Sbjct: 1885 SLSLE 1889


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.053
 Identities = 27/206 (13%), Positives = 52/206 (25%), Gaps = 73/206 (35%)

Query: 10  MESNSYEDTLRELFGIHAY-----I-----------AF---------TLDKIVSNAV--- 41
           +  +S +  LR L     Y     +           AF         T  K V++ +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 42  ----RQLQH----LVSDET------CIECYETFL-KESKKG---ATGGLCETAHQRVHLE 83
                 L H    L  DE        ++C    L +E           + E+    +   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 84  QGYQK--KSEVAMTDENCFKII-------------IFKKDCKLTIELLDTESSDNEGEDN 128
             ++     ++    E+   ++             +F     +   LL     D    D 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 129 DNDNDE-------DKDDNE-----HD 142
               ++       +K   E       
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPS 430


>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
           complex, translation regulation; 2.74A
           {Schizosaccharomyces pombe}
          Length = 592

 Score = 30.9 bits (70), Expect = 0.27
 Identities = 6/76 (7%), Positives = 24/76 (31%)

Query: 128 NDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPKVESEPPEQS 187
           N + +D + D+   + + + +  E++              P +E+ + +         + 
Sbjct: 9   NLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEK 68

Query: 188 TTDSQETDQDQDVPEQ 203
           + +            +
Sbjct: 69  SVNYLLQKASSKAGAK 84


>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
           alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
           secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
           pneumoniae} PDB: 2xqx_A
          Length = 937

 Score = 30.7 bits (68), Expect = 0.35
 Identities = 11/80 (13%), Positives = 26/80 (32%)

Query: 123 NEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPKVESE 182
           + G  +  +N   + +    P+ S  ++E  S   E    E +     E        ++E
Sbjct: 7   HHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE 66

Query: 183 PPEQSTTDSQETDQDQDVPE 202
               ++  +     +    E
Sbjct: 67  GVATASETASPASNEAATTE 86



 Score = 30.3 bits (67), Expect = 0.47
 Identities = 11/85 (12%), Positives = 25/85 (29%)

Query: 119 ESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPK 178
           E++  E    + +    + ++  +      + E     + E      TA           
Sbjct: 23  ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82

Query: 179 VESEPPEQSTTDSQETDQDQDVPEQ 203
             +E  E ++    E    + V E 
Sbjct: 83  ATTETAEAASAAKPEEKASEVVAET 107



 Score = 29.5 bits (65), Expect = 0.85
 Identities = 10/85 (11%), Positives = 26/85 (30%)

Query: 117 DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVE 176
             E++  E  +  +    ++  +E   +  + +++  S  E E  PE        +   E
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 177 PKVESEPPEQSTTDSQETDQDQDVP 201
                +  +     + E        
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEI 163



 Score = 29.2 bits (64), Expect = 1.2
 Identities = 12/86 (13%), Positives = 27/86 (31%)

Query: 118 TESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEP 177
            E      E     ++E       +   + +  EK S    E         +++ET  +P
Sbjct: 65  AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124

Query: 178 KVESEPPEQSTTDSQETDQDQDVPEQ 203
           +  ++  E          + +  P+ 
Sbjct: 125 EATNQGDESKPAAEANKTEKEVQPDV 150


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.306    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,817,206
Number of extensions: 148988
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 52
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.5 bits)