Query psy3876
Match_columns 477
No_of_seqs 256 out of 1941
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2439|consensus 100.0 7E-110 1E-114 824.3 25.2 453 7-477 1-459 (459)
2 COG4624 Iron only hydrogenase 100.0 3.8E-88 8.3E-93 671.0 22.3 372 62-464 26-403 (411)
3 TIGR02512 Fe_only_hydrog hydro 100.0 1.2E-84 2.7E-89 672.8 32.8 362 21-407 5-373 (374)
4 PF02906 Fe_hyd_lg_C: Iron onl 100.0 1.4E-78 3.1E-83 606.1 22.8 283 114-406 1-285 (285)
5 PF02256 Fe_hyd_SSU: Iron hydr 99.3 5E-13 1.1E-17 102.2 1.7 52 415-466 5-59 (60)
6 COG1034 NuoG NADH dehydrogenas 98.8 3.3E-09 7.1E-14 116.6 3.5 167 2-194 119-292 (693)
7 COG3383 Uncharacterized anaero 98.6 9.7E-09 2.1E-13 110.8 0.9 66 19-91 145-213 (978)
8 TIGR01973 NuoG NADH-quinone ox 98.3 5.7E-07 1.2E-11 99.4 4.3 79 3-91 118-203 (603)
9 PTZ00305 NADH:ubiquinone oxido 98.3 7E-07 1.5E-11 88.3 4.1 71 15-94 203-277 (297)
10 TIGR02494 PFLE_PFLC glycyl-rad 98.2 2.4E-06 5.1E-11 86.0 6.3 118 19-162 44-165 (295)
11 PRK07860 NADH dehydrogenase su 98.1 1.6E-06 3.4E-11 98.7 4.4 63 19-91 146-211 (797)
12 PRK08493 NADH dehydrogenase su 98.1 1.4E-06 3.1E-11 98.3 3.6 71 19-91 137-225 (819)
13 PRK09130 NADH dehydrogenase su 98.1 2E-06 4.4E-11 96.2 4.3 78 4-91 122-206 (687)
14 PRK09129 NADH dehydrogenase su 98.1 2.2E-06 4.8E-11 97.5 4.1 78 4-91 121-205 (776)
15 PRK12809 putative oxidoreducta 98.1 4.1E-06 8.9E-11 93.2 5.4 115 69-197 109-237 (639)
16 PF12837 Fer4_6: 4Fe-4S bindin 97.9 2.4E-06 5.1E-11 53.1 0.4 23 65-87 2-24 (24)
17 PF13187 Fer4_9: 4Fe-4S diclus 97.8 1.4E-05 3E-10 59.6 3.1 52 24-87 1-55 (55)
18 PF14697 Fer4_21: 4Fe-4S diclu 97.8 5.8E-06 1.3E-10 63.1 0.6 51 21-88 4-58 (59)
19 PRK08166 NADH dehydrogenase su 97.8 1.5E-05 3.3E-10 91.5 4.1 68 14-91 139-210 (847)
20 PRK07569 bidirectional hydroge 97.7 2E-05 4.4E-10 76.8 3.6 68 19-92 142-212 (234)
21 PF00037 Fer4: 4Fe-4S binding 97.7 1.3E-05 2.8E-10 49.8 1.1 23 66-88 2-24 (24)
22 COG1143 NuoI Formate hydrogenl 97.7 3E-05 6.5E-10 71.8 3.5 59 23-91 55-116 (172)
23 COG1245 Predicted ATPase, RNas 97.4 7.5E-05 1.6E-09 77.9 2.4 66 17-96 11-77 (591)
24 PF12838 Fer4_7: 4Fe-4S diclus 97.3 6.4E-05 1.4E-09 55.5 0.5 48 25-86 5-52 (52)
25 TIGR02179 PorD_KorD 2-oxoacid: 97.2 0.00024 5.3E-09 56.9 2.4 70 2-91 4-76 (78)
26 PRK13409 putative ATPase RIL; 97.1 0.00018 4E-09 79.3 1.8 61 23-97 15-77 (590)
27 KOG3256|consensus 97.1 0.00027 5.8E-09 63.8 2.2 58 18-90 106-170 (212)
28 COG1142 HycB Fe-S-cluster-cont 97.0 0.00034 7.4E-09 64.2 2.5 55 17-92 45-104 (165)
29 PRK08348 NADH-plastoquinone ox 97.0 0.00057 1.2E-08 59.7 3.4 54 19-91 38-94 (120)
30 PRK05113 electron transport co 97.0 0.0005 1.1E-08 65.1 3.0 52 20-91 111-165 (191)
31 TIGR02936 fdxN_nitrog ferredox 97.0 0.00039 8.5E-09 57.4 1.9 24 66-89 66-89 (91)
32 PRK10076 pyruvate formate lyas 96.9 0.0011 2.3E-08 63.9 4.8 81 79-175 4-91 (213)
33 PRK09624 porD pyuvate ferredox 96.9 0.0005 1.1E-08 58.7 2.2 51 21-91 49-102 (105)
34 TIGR01944 rnfB electron transp 96.9 0.00074 1.6E-08 62.4 3.5 52 19-90 109-163 (165)
35 PF13237 Fer4_10: 4Fe-4S diclu 96.9 0.00066 1.4E-08 50.0 2.4 20 64-83 33-52 (52)
36 PRK08222 hydrogenase 4 subunit 96.9 0.00071 1.5E-08 63.5 3.0 105 21-153 36-143 (181)
37 COG2768 Uncharacterized Fe-S c 96.9 0.00066 1.4E-08 67.3 2.7 55 13-89 182-240 (354)
38 PRK05888 NADH dehydrogenase su 96.8 0.00098 2.1E-08 61.4 3.4 26 66-91 93-118 (164)
39 PRK09625 porD pyruvate flavodo 96.8 0.00067 1.4E-08 60.5 1.8 47 21-87 57-106 (133)
40 PF12798 Fer4_3: 4Fe-4S bindin 96.7 0.00057 1.2E-08 37.5 0.7 15 72-86 1-15 (15)
41 TIGR01971 NuoI NADH-quinone ox 96.7 0.001 2.2E-08 58.0 2.7 26 66-91 78-103 (122)
42 COG1144 Pyruvate:ferredoxin ox 96.6 0.001 2.3E-08 54.4 1.9 53 19-90 31-86 (91)
43 PF12797 Fer4_2: 4Fe-4S bindin 96.6 0.00089 1.9E-08 40.4 0.9 19 66-84 4-22 (22)
44 PRK08764 ferredoxin; Provision 96.6 0.0015 3.2E-08 58.4 2.7 24 66-89 111-134 (135)
45 TIGR00403 ndhI NADH-plastoquin 96.6 0.0013 2.9E-08 61.8 2.4 28 64-91 96-123 (183)
46 TIGR03048 PS_I_psaC photosyste 96.5 0.0018 3.9E-08 52.2 2.8 24 67-90 42-65 (80)
47 TIGR02912 sulfite_red_C sulfit 96.5 0.0012 2.5E-08 67.3 2.1 52 21-90 167-221 (314)
48 PRK06991 ferredoxin; Provision 96.5 0.0013 2.9E-08 65.3 2.1 51 21-91 83-136 (270)
49 COG1146 Ferredoxin [Energy pro 96.5 0.0019 4.2E-08 50.4 2.5 53 21-90 6-61 (68)
50 CHL00065 psaC photosystem I su 96.5 0.0015 3.3E-08 52.8 1.9 25 67-91 43-67 (81)
51 PRK09623 vorD 2-ketoisovalerat 96.4 0.0017 3.7E-08 55.4 2.1 26 66-91 77-102 (105)
52 TIGR02163 napH_ ferredoxin-typ 96.4 0.002 4.2E-08 63.8 2.7 24 66-89 230-253 (255)
53 PRK06273 ferredoxin; Provision 96.4 0.0016 3.5E-08 60.1 2.0 61 21-89 47-110 (165)
54 TIGR02060 aprB adenosine phosp 96.4 0.0017 3.6E-08 57.8 1.9 30 66-95 41-70 (132)
55 TIGR00402 napF ferredoxin-type 96.4 0.0026 5.5E-08 53.9 2.8 25 66-90 62-86 (101)
56 PLN00071 photosystem I subunit 96.4 0.0026 5.7E-08 51.3 2.7 25 67-91 43-67 (81)
57 PRK12387 formate hydrogenlyase 96.3 0.0022 4.8E-08 60.1 2.5 56 21-91 36-94 (180)
58 PF13247 Fer4_11: 4Fe-4S diclu 96.3 0.0019 4.2E-08 54.4 1.5 45 28-91 17-61 (98)
59 PF14697 Fer4_21: 4Fe-4S diclu 96.2 0.0013 2.9E-08 50.1 0.4 25 65-89 1-25 (59)
60 COG1145 NapF Ferredoxin [Energ 96.2 0.0021 4.6E-08 53.2 1.4 55 20-90 26-83 (99)
61 PRK09626 oorD 2-oxoglutarate-a 96.1 0.0045 9.7E-08 52.5 3.0 26 66-91 49-74 (103)
62 TIGR01660 narH nitrate reducta 96.1 0.0031 6.8E-08 66.2 2.2 27 64-90 208-234 (492)
63 CHL00014 ndhI NADH dehydrogena 96.0 0.0046 1E-07 57.2 2.9 27 65-91 94-120 (167)
64 PRK02651 photosystem I subunit 96.0 0.0048 1E-07 49.7 2.7 23 67-89 43-65 (81)
65 TIGR02066 dsrB sulfite reducta 96.0 0.0033 7.2E-08 64.7 2.0 47 25-88 186-232 (341)
66 PRK09477 napH quinol dehydroge 95.9 0.0046 1E-07 61.7 2.5 25 67-91 239-263 (271)
67 COG0437 HybA Fe-S-cluster-cont 95.8 0.0056 1.2E-07 58.1 2.6 28 63-90 93-120 (203)
68 PF12800 Fer4_4: 4Fe-4S bindin 95.8 0.0037 8.1E-08 35.5 0.7 16 70-85 2-17 (17)
69 TIGR03478 DMSO_red_II_bet DMSO 95.8 0.0051 1.1E-07 62.0 2.2 27 63-89 155-181 (321)
70 PRK10194 ferredoxin-type prote 95.7 0.0051 1.1E-07 56.6 1.8 26 65-90 133-158 (163)
71 PRK12771 putative glutamate sy 95.7 0.0053 1.1E-07 67.5 1.9 25 65-89 536-560 (564)
72 PRK08318 dihydropyrimidine deh 95.6 0.0087 1.9E-07 63.4 3.1 56 21-91 340-399 (420)
73 TIGR03224 benzo_boxA benzoyl-C 95.4 0.0072 1.6E-07 63.9 2.0 24 66-89 35-58 (411)
74 PRK15449 ferredoxin-like prote 95.4 0.0055 1.2E-07 51.2 0.8 41 27-87 38-78 (95)
75 TIGR02700 flavo_MJ0208 archaeo 95.3 0.0089 1.9E-07 58.4 2.0 25 66-90 173-197 (234)
76 COG2221 DsrA Dissimilatory sul 95.3 0.0068 1.5E-07 60.9 1.0 42 24-87 176-217 (317)
77 PRK14028 pyruvate ferredoxin o 95.2 0.0088 1.9E-07 60.8 1.8 25 66-90 285-309 (312)
78 TIGR00397 mauM_napG MauM/NapG 95.2 0.0093 2E-07 57.4 1.8 63 15-89 48-112 (213)
79 TIGR03149 cyt_nit_nrfC cytochr 95.2 0.012 2.6E-07 57.1 2.5 50 21-89 90-144 (225)
80 COG1143 NuoI Formate hydrogenl 95.2 0.0077 1.7E-07 55.9 0.9 28 64-91 49-76 (172)
81 PRK07118 ferredoxin; Validated 95.1 0.0088 1.9E-07 60.0 1.3 48 23-91 213-263 (280)
82 COG1149 MinD superfamily P-loo 95.1 0.011 2.4E-07 58.4 1.9 51 21-91 67-120 (284)
83 PRK10194 ferredoxin-type prote 95.0 0.0082 1.8E-07 55.2 0.6 50 23-90 34-86 (163)
84 PF13237 Fer4_10: 4Fe-4S diclu 94.8 0.01 2.2E-07 43.5 0.7 21 64-84 1-21 (52)
85 TIGR02176 pyruv_ox_red pyruvat 94.8 0.015 3.2E-07 69.0 2.4 27 65-91 734-762 (1165)
86 TIGR00397 mauM_napG MauM/NapG 94.7 0.021 4.5E-07 55.0 2.7 56 24-90 140-197 (213)
87 PRK14993 tetrathionate reducta 94.7 0.018 3.9E-07 56.6 2.3 26 65-90 125-150 (244)
88 PRK09898 hypothetical protein; 94.6 0.024 5.2E-07 54.3 2.9 23 66-88 150-172 (208)
89 PRK09626 oorD 2-oxoglutarate-a 94.5 0.015 3.3E-07 49.3 1.1 27 63-89 9-35 (103)
90 COG4231 Indolepyruvate ferredo 94.5 0.021 4.6E-07 62.1 2.4 57 14-91 568-629 (640)
91 TIGR01582 FDH-beta formate deh 94.3 0.026 5.6E-07 56.7 2.4 27 63-89 117-143 (283)
92 PRK07118 ferredoxin; Validated 94.3 0.027 5.9E-07 56.5 2.5 66 20-91 165-234 (280)
93 PRK09476 napG quinol dehydroge 94.3 0.018 3.9E-07 56.9 1.2 63 16-90 55-119 (254)
94 COG1145 NapF Ferredoxin [Energ 94.2 0.016 3.4E-07 47.9 0.6 24 66-89 25-48 (99)
95 PRK08348 NADH-plastoquinone ox 94.2 0.019 4.1E-07 50.0 1.1 27 63-89 35-61 (120)
96 TIGR03315 Se_ygfK putative sel 94.2 0.02 4.3E-07 66.7 1.4 21 71-91 922-942 (1012)
97 PRK09476 napG quinol dehydroge 94.1 0.027 5.9E-07 55.7 2.0 25 65-89 179-205 (254)
98 TIGR02936 fdxN_nitrog ferredox 94.0 0.019 4.1E-07 47.2 0.5 27 64-90 15-41 (91)
99 PRK13795 hypothetical protein; 93.9 0.026 5.5E-07 63.1 1.6 52 19-89 577-631 (636)
100 PF13746 Fer4_18: 4Fe-4S diclu 93.8 0.026 5.6E-07 44.4 1.0 21 66-86 46-66 (69)
101 PRK10330 formate dehydrogenase 93.6 0.076 1.7E-06 49.6 4.0 31 66-96 125-161 (181)
102 PRK09853 putative selenate red 93.4 0.041 8.9E-07 64.0 2.2 26 65-91 922-947 (1019)
103 cd07030 RNAP_D D subunit of Ar 93.4 0.033 7.1E-07 55.2 1.2 50 21-90 170-219 (259)
104 PRK10330 formate dehydrogenase 93.4 0.035 7.6E-07 51.9 1.3 26 65-90 82-107 (181)
105 TIGR00273 iron-sulfur cluster- 93.4 0.028 6E-07 59.8 0.6 18 69-86 342-359 (432)
106 COG1148 HdrA Heterodisulfide r 93.3 0.065 1.4E-06 56.9 3.3 53 15-91 551-608 (622)
107 PF13187 Fer4_9: 4Fe-4S diclus 93.2 0.035 7.6E-07 41.0 0.9 20 71-90 1-20 (55)
108 TIGR03287 methan_mark_16 putat 93.2 0.037 8E-07 57.6 1.3 25 67-91 327-351 (391)
109 PRK09898 hypothetical protein; 93.2 0.056 1.2E-06 51.8 2.4 24 68-91 179-202 (208)
110 PRK10882 hydrogenase 2 protein 93.1 0.089 1.9E-06 53.9 3.9 31 68-98 170-213 (328)
111 PF12838 Fer4_7: 4Fe-4S diclus 93.1 0.033 7.1E-07 40.9 0.5 21 71-91 1-21 (52)
112 PRK09326 F420H2 dehydrogenase 93.0 0.12 2.5E-06 53.5 4.6 72 67-163 50-121 (341)
113 KOG0063|consensus 93.0 0.048 1E-06 57.1 1.7 48 27-91 24-71 (592)
114 PF13484 Fer4_16: 4Fe-4S doubl 93.0 0.022 4.8E-07 44.0 -0.6 58 24-85 4-67 (67)
115 PRK10882 hydrogenase 2 protein 93.0 0.073 1.6E-06 54.6 3.0 50 21-89 108-162 (328)
116 PRK08222 hydrogenase 4 subunit 92.9 0.039 8.4E-07 51.8 0.8 28 63-90 31-58 (181)
117 TIGR03149 cyt_nit_nrfC cytochr 92.9 0.071 1.5E-06 51.8 2.6 32 68-99 150-191 (225)
118 CHL00065 psaC photosystem I su 92.8 0.049 1.1E-06 43.9 1.1 26 65-90 4-29 (81)
119 TIGR03294 FrhG coenzyme F420 h 92.8 0.045 9.7E-07 53.3 1.1 50 19-89 170-222 (228)
120 PF13484 Fer4_16: 4Fe-4S doubl 92.8 0.037 8.1E-07 42.7 0.4 20 71-90 1-20 (67)
121 PRK14993 tetrathionate reducta 92.8 0.061 1.3E-06 52.9 2.0 34 67-100 154-196 (244)
122 PLN00071 photosystem I subunit 92.7 0.052 1.1E-06 43.7 1.1 24 66-89 5-28 (81)
123 TIGR02951 DMSO_dmsB DMSO reduc 92.6 0.075 1.6E-06 48.7 2.2 26 65-90 90-115 (161)
124 cd01916 ACS_1 Acetyl-CoA synth 92.1 0.16 3.5E-06 57.1 4.5 19 68-86 401-419 (731)
125 TIGR02179 PorD_KorD 2-oxoacid: 92.1 0.062 1.3E-06 42.8 0.9 25 65-89 20-44 (78)
126 PRK12809 putative oxidoreducta 92.0 0.078 1.7E-06 59.3 2.0 27 65-91 80-106 (639)
127 TIGR00403 ndhI NADH-plastoquin 92.0 0.066 1.4E-06 50.3 1.1 27 63-89 55-81 (183)
128 PRK06273 ferredoxin; Provision 91.7 0.064 1.4E-06 49.6 0.7 25 66-90 45-69 (165)
129 PRK00783 DNA-directed RNA poly 91.7 0.076 1.7E-06 52.7 1.3 23 68-90 197-219 (263)
130 PRK12387 formate hydrogenlyase 91.7 0.067 1.5E-06 50.0 0.8 28 63-90 31-58 (180)
131 TIGR03048 PS_I_psaC photosyste 91.7 0.082 1.8E-06 42.5 1.2 24 66-89 4-27 (80)
132 PRK13984 putative oxidoreducta 91.6 0.12 2.7E-06 57.2 3.0 27 65-91 81-107 (604)
133 PF13459 Fer4_15: 4Fe-4S singl 91.5 0.078 1.7E-06 40.9 0.8 20 66-85 2-21 (65)
134 TIGR02745 ccoG_rdxA_fixG cytoc 91.5 0.086 1.9E-06 56.1 1.4 17 70-87 255-271 (434)
135 COG1141 Fer Ferredoxin [Energy 91.4 0.068 1.5E-06 41.9 0.5 23 64-86 2-24 (68)
136 CHL00014 ndhI NADH dehydrogena 91.2 0.094 2E-06 48.5 1.2 26 63-88 52-77 (167)
137 TIGR02064 dsrA sulfite reducta 91.2 0.082 1.8E-06 55.7 0.9 25 64-89 266-290 (402)
138 COG2878 Predicted NADH:ubiquin 91.1 0.026 5.6E-07 52.3 -2.5 25 67-91 142-166 (198)
139 TIGR02951 DMSO_dmsB DMSO reduc 91.1 0.17 3.8E-06 46.3 2.9 25 68-92 120-153 (161)
140 PRK09625 porD pyruvate flavodo 91.1 0.073 1.6E-06 47.4 0.4 27 63-89 52-78 (133)
141 TIGR03336 IOR_alpha indolepyru 91.0 0.11 2.4E-06 57.7 1.8 22 65-87 574-595 (595)
142 PRK02651 photosystem I subunit 90.9 0.11 2.4E-06 41.7 1.2 23 67-89 6-28 (81)
143 PRK05888 NADH dehydrogenase su 90.8 0.11 2.3E-06 47.9 1.2 20 70-89 58-77 (164)
144 TIGR02494 PFLE_PFLC glycyl-rad 90.6 0.11 2.4E-06 52.2 1.2 26 63-88 41-66 (295)
145 PRK12769 putative oxidoreducta 90.5 0.15 3.3E-06 57.2 2.3 34 66-99 115-154 (654)
146 PRK00941 acetyl-CoA decarbonyl 90.5 0.053 1.2E-06 61.0 -1.3 20 67-86 439-458 (781)
147 TIGR01971 NuoI NADH-quinone ox 90.3 0.11 2.4E-06 45.1 0.8 21 69-89 42-62 (122)
148 TIGR00314 cdhA CO dehydrogenas 90.2 0.08 1.7E-06 59.6 -0.3 20 67-86 434-453 (784)
149 TIGR03278 methan_mark_10 putat 90.0 0.32 7E-06 51.3 4.1 79 73-161 27-113 (404)
150 PRK12769 putative oxidoreducta 89.7 0.31 6.8E-06 54.6 4.0 27 65-91 80-106 (654)
151 PRK06991 ferredoxin; Provision 89.6 0.14 3E-06 51.1 1.0 27 63-89 78-104 (270)
152 COG2878 Predicted NADH:ubiquin 89.3 0.23 4.9E-06 46.2 2.0 41 62-103 107-147 (198)
153 PF13247 Fer4_11: 4Fe-4S diclu 89.3 0.24 5.1E-06 41.8 2.0 59 8-89 24-95 (98)
154 TIGR02512 Fe_only_hydrog hydro 89.2 0.14 3E-06 53.6 0.6 23 66-88 3-25 (374)
155 PF13370 Fer4_13: 4Fe-4S singl 88.7 0.19 4.1E-06 38.0 0.9 20 67-86 1-20 (58)
156 PRK09624 porD pyuvate ferredox 88.6 0.15 3.3E-06 43.4 0.4 24 66-89 47-70 (105)
157 TIGR03478 DMSO_red_II_bet DMSO 88.4 0.25 5.4E-06 50.1 1.8 26 66-91 185-219 (321)
158 PRK05113 electron transport co 88.1 0.21 4.5E-06 47.3 0.9 27 63-89 107-133 (191)
159 TIGR01944 rnfB electron transp 88.0 0.21 4.6E-06 46.1 0.9 27 63-89 106-132 (165)
160 PRK09623 vorD 2-ketoisovalerat 87.6 0.21 4.6E-06 42.5 0.7 24 65-88 46-69 (105)
161 PRK05035 electron transport co 87.4 0.2 4.3E-06 56.4 0.5 21 67-87 406-426 (695)
162 COG0247 GlpC Fe-S oxidoreducta 86.5 1.6 3.6E-05 45.2 6.7 110 138-249 164-286 (388)
163 COG1139 Uncharacterized conser 86.4 0.4 8.8E-06 50.2 2.0 65 22-86 307-374 (459)
164 TIGR02060 aprB adenosine phosp 86.1 0.32 6.9E-06 43.3 0.9 24 66-89 4-32 (132)
165 COG2768 Uncharacterized Fe-S c 86.0 0.39 8.4E-06 48.2 1.6 27 63-89 186-212 (354)
166 TIGR01945 rnfC electron transp 85.6 0.36 7.8E-06 51.5 1.2 21 66-86 398-418 (435)
167 PRK09326 F420H2 dehydrogenase 85.5 0.31 6.8E-06 50.3 0.7 26 66-91 8-33 (341)
168 TIGR03224 benzo_boxA benzoyl-C 85.4 0.36 7.8E-06 51.1 1.1 27 63-89 3-29 (411)
169 TIGR00402 napF ferredoxin-type 85.3 0.38 8.2E-06 40.6 1.0 24 66-89 30-53 (101)
170 COG1149 MinD superfamily P-loo 85.2 0.33 7.2E-06 48.1 0.7 26 63-88 62-87 (284)
171 TIGR01582 FDH-beta formate deh 84.7 0.73 1.6E-05 46.3 2.9 30 69-98 150-188 (283)
172 TIGR02700 flavo_MJ0208 archaeo 84.7 0.37 8.1E-06 47.0 0.8 25 65-89 143-167 (234)
173 PRK14028 pyruvate ferredoxin o 84.4 0.35 7.7E-06 49.2 0.5 25 64-88 241-265 (312)
174 PF13183 Fer4_8: 4Fe-4S diclus 83.6 0.31 6.7E-06 36.1 -0.3 17 69-85 2-18 (57)
175 PRK08764 ferredoxin; Provision 83.3 0.5 1.1E-05 42.1 0.9 23 67-89 82-104 (135)
176 COG2221 DsrA Dissimilatory sul 83.1 0.39 8.4E-06 48.5 0.1 26 66-91 168-193 (317)
177 TIGR02910 sulfite_red_A sulfit 82.8 0.68 1.5E-05 47.6 1.8 21 66-86 297-317 (334)
178 PRK12814 putative NADPH-depend 82.0 0.32 7E-06 54.6 -1.0 21 64-84 610-630 (652)
179 TIGR02176 pyruv_ox_red pyruvat 82.0 0.56 1.2E-05 56.0 1.0 26 65-90 678-703 (1165)
180 PRK11168 glpC sn-glycerol-3-ph 82.0 0.83 1.8E-05 47.8 2.1 21 66-86 50-70 (396)
181 KOG3256|consensus 81.9 0.47 1E-05 43.3 0.2 27 64-90 105-131 (212)
182 PRK12576 succinate dehydrogena 81.8 0.65 1.4E-05 46.6 1.2 18 69-86 205-222 (279)
183 COG1146 Ferredoxin [Energy pro 81.7 0.52 1.1E-05 36.6 0.4 24 66-89 4-27 (68)
184 PRK06259 succinate dehydrogena 81.7 14 0.0003 39.9 11.5 102 138-249 277-388 (486)
185 COG2440 FixX Ferredoxin-like p 80.8 0.54 1.2E-05 39.3 0.2 48 21-88 34-84 (99)
186 TIGR03294 FrhG coenzyme F420 h 80.6 0.59 1.3E-05 45.5 0.4 26 64-89 168-193 (228)
187 PRK07570 succinate dehydrogena 80.4 0.62 1.3E-05 46.0 0.5 18 69-86 211-228 (250)
188 COG1453 Predicted oxidoreducta 80.4 0.89 1.9E-05 46.9 1.6 19 68-86 349-367 (391)
189 PF13534 Fer4_17: 4Fe-4S diclu 80.0 1.3 2.7E-05 33.4 2.0 21 71-91 1-21 (61)
190 PF13183 Fer4_8: 4Fe-4S diclus 80.0 0.69 1.5E-05 34.2 0.5 16 70-85 41-56 (57)
191 PRK12386 fumarate reductase ir 79.3 0.76 1.6E-05 45.4 0.7 19 68-86 198-216 (251)
192 PRK09477 napH quinol dehydroge 79.1 0.76 1.6E-05 45.9 0.6 21 67-87 205-225 (271)
193 TIGR00276 iron-sulfur cluster 78.9 0.8 1.7E-05 46.0 0.7 22 68-89 157-178 (282)
194 TIGR03379 glycerol3P_GlpC glyc 78.0 1.6 3.4E-05 45.9 2.6 20 68-87 50-69 (397)
195 PF13534 Fer4_17: 4Fe-4S diclu 77.7 1 2.2E-05 33.8 0.9 20 67-86 41-60 (61)
196 COG0348 NapH Polyferredoxin [E 77.0 1.6 3.5E-05 45.9 2.4 20 71-90 246-265 (386)
197 PRK07570 succinate dehydrogena 76.4 1 2.3E-05 44.4 0.7 21 66-86 153-173 (250)
198 PRK13984 putative oxidoreducta 75.3 1.2 2.6E-05 49.5 0.9 25 65-89 40-64 (604)
199 TIGR00276 iron-sulfur cluster 75.2 0.64 1.4E-05 46.7 -1.1 21 69-89 207-228 (282)
200 COG1148 HdrA Heterodisulfide r 75.2 0.97 2.1E-05 48.3 0.2 27 63-90 554-580 (622)
201 TIGR02486 RDH reductive dehalo 75.0 1.8 3.9E-05 44.2 2.1 13 74-86 268-280 (314)
202 TIGR02912 sulfite_red_C sulfit 74.6 1.3 2.9E-05 45.0 1.0 22 65-86 164-185 (314)
203 TIGR02163 napH_ ferredoxin-typ 74.6 1.1 2.5E-05 44.2 0.4 20 68-87 199-218 (255)
204 PRK15055 anaerobic sulfite red 74.5 1.6 3.5E-05 45.1 1.5 19 68-86 305-323 (344)
205 TIGR02486 RDH reductive dehalo 74.3 1.3 2.8E-05 45.2 0.8 23 69-91 204-226 (314)
206 PRK13795 hypothetical protein; 74.2 1.3 2.9E-05 49.5 0.9 28 63-90 574-601 (636)
207 TIGR02826 RNR_activ_nrdG3 anae 73.8 12 0.00026 33.8 6.9 78 65-161 18-98 (147)
208 PTZ00305 NADH:ubiquinone oxido 73.6 1.4 3E-05 44.2 0.8 20 65-84 207-226 (297)
209 PRK05035 electron transport co 73.2 1.4 3.1E-05 49.7 0.9 22 68-89 368-389 (695)
210 TIGR03290 CoB_CoM_SS_C CoB--Co 72.2 1.4 3E-05 39.6 0.4 17 70-86 2-18 (144)
211 COG0437 HybA Fe-S-cluster-cont 71.3 3.3 7.2E-05 39.5 2.7 35 69-103 126-170 (203)
212 PRK15055 anaerobic sulfite red 71.2 1.5 3.2E-05 45.3 0.4 16 70-85 226-241 (344)
213 PRK08493 NADH dehydrogenase su 70.5 1.8 3.8E-05 49.8 0.8 22 63-84 134-155 (819)
214 COG1144 Pyruvate:ferredoxin ox 70.2 1.4 3E-05 36.3 -0.0 26 65-90 30-55 (91)
215 PRK11274 glcF glycolate oxidas 70.2 1.1 2.3E-05 47.2 -0.9 18 69-86 72-89 (407)
216 COG1150 HdrC Heterodisulfide r 70.1 2.4 5.1E-05 40.0 1.4 28 68-95 37-64 (195)
217 TIGR00384 dhsB succinate dehyd 69.6 2.5 5.4E-05 40.8 1.6 19 68-86 192-210 (220)
218 TIGR02745 ccoG_rdxA_fixG cytoc 69.6 2 4.4E-05 45.8 1.0 18 69-86 230-247 (434)
219 PRK08640 sdhB succinate dehydr 68.7 1.9 4E-05 42.6 0.5 19 68-86 150-168 (249)
220 TIGR02491 NrdG anaerobic ribon 68.6 15 0.00032 33.2 6.4 87 67-167 20-111 (154)
221 PRK08318 dihydropyrimidine deh 68.5 1.8 3.8E-05 46.0 0.2 23 63-85 335-357 (420)
222 PRK07569 bidirectional hydroge 68.1 2 4.4E-05 41.8 0.6 22 63-84 139-160 (234)
223 COG4656 RnfC Predicted NADH:ub 68.0 1.7 3.8E-05 46.7 0.1 20 71-90 366-385 (529)
224 COG1600 Uncharacterized Fe-S p 68.0 2.6 5.6E-05 43.4 1.3 25 70-94 185-209 (337)
225 TIGR02910 sulfite_red_A sulfit 67.8 1.9 4.2E-05 44.3 0.4 17 69-85 219-235 (334)
226 PRK11168 glpC sn-glycerol-3-ph 67.6 2 4.4E-05 44.9 0.5 22 67-88 4-25 (396)
227 COG1152 CdhA CO dehydrogenase/ 66.7 0.93 2E-05 49.1 -2.2 56 19-86 399-454 (772)
228 TIGR00384 dhsB succinate dehyd 66.7 2 4.4E-05 41.4 0.2 20 68-87 136-155 (220)
229 PRK12576 succinate dehydrogena 65.9 2.3 5E-05 42.7 0.5 20 68-87 150-169 (279)
230 COG0479 FrdB Succinate dehydro 65.0 2.5 5.4E-05 41.2 0.5 22 68-89 140-161 (234)
231 PRK15033 tricarballylate utili 64.7 2.2 4.8E-05 44.6 0.1 16 69-84 66-81 (389)
232 COG4656 RnfC Predicted NADH:ub 64.4 1.3 2.8E-05 47.6 -1.6 24 67-90 401-424 (529)
233 PRK00783 DNA-directed RNA poly 64.4 2.9 6.4E-05 41.4 0.9 25 64-89 164-188 (263)
234 TIGR01945 rnfC electron transp 64.3 2.9 6.3E-05 44.6 0.9 21 67-87 360-380 (435)
235 TIGR03287 methan_mark_16 putat 63.5 2.6 5.6E-05 44.2 0.3 26 64-89 296-323 (391)
236 PRK13552 frdB fumarate reducta 62.9 3 6.6E-05 40.8 0.7 21 67-87 146-166 (239)
237 PRK09129 NADH dehydrogenase su 62.9 3 6.6E-05 47.8 0.8 20 65-84 139-158 (776)
238 PRK13030 2-oxoacid ferredoxin 62.4 4.4 9.5E-05 48.3 1.9 21 64-84 656-677 (1159)
239 TIGR01973 NuoG NADH-quinone ox 62.3 3.2 6.9E-05 46.2 0.8 21 64-84 136-156 (603)
240 TIGR03290 CoB_CoM_SS_C CoB--Co 62.0 5.4 0.00012 35.7 2.1 18 70-87 46-63 (144)
241 TIGR00273 iron-sulfur cluster- 61.0 3 6.4E-05 44.5 0.3 19 68-86 291-309 (432)
242 COG1142 HycB Fe-S-cluster-cont 61.0 8.1 0.00018 35.7 3.1 57 16-91 74-140 (165)
243 PRK12386 fumarate reductase ir 60.7 3.1 6.8E-05 41.1 0.3 19 68-86 140-158 (251)
244 cd07030 RNAP_D D subunit of Ar 59.1 3.7 8E-05 40.6 0.5 21 69-89 168-188 (259)
245 PRK05950 sdhB succinate dehydr 58.9 5.3 0.00011 38.9 1.6 18 69-86 197-214 (232)
246 COG3383 Uncharacterized anaero 58.4 3.4 7.3E-05 46.4 0.1 18 66-83 145-162 (978)
247 PRK09130 NADH dehydrogenase su 57.9 4 8.6E-05 46.3 0.6 19 65-83 140-158 (687)
248 COG1034 NuoG NADH dehydrogenas 57.8 3.5 7.7E-05 46.4 0.2 20 67-86 141-160 (693)
249 TIGR02484 CitB CitB domain pro 57.5 3.7 8E-05 42.7 0.2 21 68-88 46-66 (372)
250 PRK08166 NADH dehydrogenase su 57.4 4.4 9.4E-05 47.0 0.8 19 65-83 144-162 (847)
251 TIGR01660 narH nitrate reducta 57.2 5 0.00011 42.8 1.1 24 66-89 177-202 (492)
252 TIGR01936 nqrA NADH:ubiquinone 57.0 4.6 0.0001 43.3 0.8 21 68-88 371-391 (447)
253 PRK12385 fumarate reductase ir 55.9 3.9 8.6E-05 40.2 0.1 19 69-87 146-164 (244)
254 COG0602 NrdG Organic radical a 55.4 25 0.00055 33.7 5.6 83 65-165 25-113 (212)
255 PRK12575 succinate dehydrogena 55.4 6.7 0.00015 38.4 1.6 18 69-86 200-217 (235)
256 PRK07860 NADH dehydrogenase su 54.8 5.1 0.00011 46.2 0.8 20 65-84 145-164 (797)
257 PRK09193 indolepyruvate ferred 54.7 7.1 0.00015 46.5 2.0 22 64-85 670-692 (1165)
258 PLN00129 succinate dehydrogena 54.7 4.5 9.8E-05 40.5 0.3 17 70-86 187-203 (276)
259 TIGR03379 glycerol3P_GlpC glyc 54.1 4.9 0.00011 42.2 0.5 19 69-87 4-22 (397)
260 PRK13029 2-oxoacid ferredoxin 53.9 7.5 0.00016 46.4 2.0 21 64-84 684-705 (1186)
261 COG1600 Uncharacterized Fe-S p 53.8 3.9 8.4E-05 42.1 -0.3 64 21-85 186-249 (337)
262 PRK12575 succinate dehydrogena 53.6 4.4 9.5E-05 39.7 0.0 20 68-87 142-161 (235)
263 COG1139 Uncharacterized conser 53.4 4.5 9.7E-05 42.7 0.0 15 71-85 309-323 (459)
264 PRK12385 fumarate reductase ir 53.1 7.1 0.00015 38.4 1.4 17 70-86 203-219 (244)
265 PRK12577 succinate dehydrogena 52.8 4.9 0.00011 41.3 0.2 18 69-86 151-168 (329)
266 PRK05950 sdhB succinate dehydr 52.0 4.7 0.0001 39.2 -0.0 19 68-86 139-157 (232)
267 PRK05352 Na(+)-translocating N 52.0 6.2 0.00013 42.4 0.8 21 67-87 371-391 (448)
268 PF06574 FAD_syn: FAD syntheta 50.3 28 0.00061 31.7 4.8 61 113-177 37-100 (157)
269 PRK08640 sdhB succinate dehydr 50.3 9 0.00019 37.8 1.6 18 69-86 208-225 (249)
270 PRK09853 putative selenate red 49.5 7.3 0.00016 45.9 1.0 21 67-87 883-907 (1019)
271 PRK13552 frdB fumarate reducta 48.9 10 0.00022 37.2 1.7 18 69-86 205-222 (239)
272 TIGR03365 Bsubt_queE 7-cyano-7 48.9 44 0.00095 32.5 6.2 81 66-163 26-112 (238)
273 TIGR03315 Se_ygfK putative sel 48.9 7.3 0.00016 45.9 0.9 18 70-87 881-902 (1012)
274 PRK00941 acetyl-CoA decarbonyl 46.5 6.4 0.00014 44.8 -0.1 23 64-86 398-420 (781)
275 TIGR00314 cdhA CO dehydrogenas 45.1 8.2 0.00018 44.0 0.5 21 66-86 395-415 (784)
276 PRK12577 succinate dehydrogena 45.1 12 0.00026 38.4 1.7 18 69-86 208-225 (329)
277 cd01916 ACS_1 Acetyl-CoA synth 44.4 8.7 0.00019 43.6 0.5 22 65-86 360-381 (731)
278 PLN00129 succinate dehydrogena 43.5 13 0.00028 37.3 1.5 19 68-86 242-260 (276)
279 PRK11274 glcF glycolate oxidas 42.5 8.6 0.00019 40.4 0.1 20 68-87 21-40 (407)
280 PRK06259 succinate dehydrogena 41.4 10 0.00022 41.0 0.5 20 68-87 131-150 (486)
281 TIGR03336 IOR_alpha indolepyru 38.7 13 0.00028 41.4 0.7 23 63-85 543-567 (595)
282 COG1180 PflA Pyruvate-formate 37.4 60 0.0013 32.1 5.2 46 129-176 92-137 (260)
283 PRK12771 putative glutamate sy 37.4 13 0.00029 40.9 0.6 27 63-89 497-529 (564)
284 PF00403 HMA: Heavy-metal-asso 36.0 33 0.00072 25.4 2.5 14 140-153 49-62 (62)
285 TIGR00083 ribF riboflavin kina 32.9 1.1E+02 0.0024 30.9 6.3 60 114-177 31-92 (288)
286 COG0247 GlpC Fe-S oxidoreducta 32.0 14 0.00031 38.1 -0.2 21 67-87 6-26 (388)
287 COG1105 FruK Fructose-1-phosph 31.4 98 0.0021 31.6 5.6 39 118-163 133-171 (310)
288 COG1035 FrhB Coenzyme F420-red 29.2 24 0.00053 36.3 0.9 23 68-91 3-25 (332)
289 TIGR02495 NrdG2 anaerobic ribo 28.0 2.8E+02 0.0061 25.4 7.9 77 67-161 21-100 (191)
290 COG1941 FrhG Coenzyme F420-red 27.7 24 0.00052 34.5 0.5 26 66-91 185-211 (247)
291 PRK11145 pflA pyruvate formate 27.1 1.6E+02 0.0034 28.5 6.2 38 117-162 73-110 (246)
292 PRK02261 methylaspartate mutas 26.4 2.9E+02 0.0064 24.4 7.3 25 140-164 101-125 (137)
293 TIGR02066 dsrB sulfite reducta 25.4 22 0.00049 36.7 -0.2 19 72-90 183-201 (341)
294 PF02236 Viral_DNA_bi: Viral D 24.7 67 0.0015 26.4 2.6 45 188-236 40-84 (86)
295 PRK08057 cobalt-precorrin-6x r 22.2 3.8E+02 0.0082 26.4 7.8 106 93-218 12-121 (248)
296 TIGR01936 nqrA NADH:ubiquinone 21.5 20 0.00044 38.5 -1.4 35 66-103 408-444 (447)
297 KOG1611|consensus 21.2 24 0.00053 34.4 -0.8 13 182-194 193-205 (249)
298 PRK05352 Na(+)-translocating N 21.2 17 0.00038 39.0 -2.0 20 67-86 410-431 (448)
299 COG1179 Dinucleotide-utilizing 20.5 99 0.0021 30.6 3.2 58 118-188 94-153 (263)
No 1
>KOG2439|consensus
Probab=100.00 E-value=6.6e-110 Score=824.30 Aligned_cols=453 Identities=43% Similarity=0.781 Sum_probs=414.0
Q ss_pred cccccCCCCCCCcCCCccccccccccCCCCCCCCceEEEecCCCceeec-Ccccccccccccccccccccchhhhhcccc
Q psy3876 7 SGVLQLTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQET-NGREEKLKKVEISLTDCLACSGCITSAESV 85 (477)
Q Consensus 7 s~~~~~~~ldD~i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~-~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ 85 (477)
|+.|+++||||||.|+++||+|..+-..+. .+.|+++.+|.+..+. ++....+++|+|+++||++|++|||+.+++
T Consensus 1 s~~l~l~dlnDFi~p~~~CikP~~~~k~~~---~~~~~v~~d~~~~v~~e~g~t~~l~~~kISLsDCLACSGCITSaEtV 77 (459)
T KOG2439|consen 1 SALLRLSDLNDFIAPSLACIKPLQVSKTKK---KKNIRVDADGPYEVIKEKGETHQLEKVKISLSDCLACSGCITSAETV 77 (459)
T ss_pred CCcccccchhhhhchHHHhccchhhccccc---CCcccccCCCcceeecCCCccccccceeeeHHhhhhccCccchhhhh
Confidence 688999999999999999999997655532 2369999999888775 445567899999999999999999999999
Q ss_pred cccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccchhhh
Q psy3876 86 LITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFS 165 (477)
Q Consensus 86 ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~ 165 (477)
+++.||+.++.+.|+..++ ++.+||++|||+|+||++.|||+..++...|..++|++|+|+|+||+++++++
T Consensus 78 lls~Qs~~~~~k~l~~~k~--------~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~s 149 (459)
T KOG2439|consen 78 LLSEQSHKEFLKVLQKSKQ--------QKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFS 149 (459)
T ss_pred hhhhhhHHHHHHhhhhccc--------cceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHH
Confidence 9999999999999987653 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC----CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEE
Q psy3876 166 LVELENEFLDRFLSG----GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVT 241 (477)
Q Consensus 166 ~~e~~~e~~~~~~~~----~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~ 241 (477)
+.|..+||+.|+++. ..||++|+|||||||+||+||. ||||||+||||||++|++||.+++++.++.|+++|||+
T Consensus 150 l~es~~Efv~~~r~~~~~~~~PlLsSaCPG~v~YaEkt~~~-Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvs 228 (459)
T KOG2439|consen 150 LSESYEEFVARYRQHSEEERTPLLSSACPGWVCYAEKTHGR-LIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVS 228 (459)
T ss_pred HHHHHHHHHHHhhcccccccccchhhcCCceeEEeeccccc-cchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEe
Confidence 999999999987653 5699999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEccccchhhhhcccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHH
Q psy3876 242 LMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYA 321 (477)
Q Consensus 242 I~PC~aKK~Ea~r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~ 321 (477)
+|||+|||+||+|++|- +++.+++|||||++|+.+++++.++ +++..+.+ .|...+..+.....++.||.||||+
T Consensus 229 vMPCfDKKLEAsR~~f~--~~~~r~~DcVlT~~Ei~k~l~e~~~--~l~~~~~~-~d~l~~~~~~~~~~~~~GgsSGGYa 303 (459)
T KOG2439|consen 229 VMPCFDKKLEASREEFK--EHGVRDVDCVLTTGEIFKLLEELDF--DLPVRDAE-VDTLPSGLSRETVTSNDGGSSGGYA 303 (459)
T ss_pred ecccccHhhhccchhhh--ccCCcccceEeehHHHHHHHHhcCc--ccccccch-hhcccccccccceeeccCCCCcchH
Confidence 99999999999999984 4567899999999999999999999 88877543 4544333333334467899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcceeeccCCCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCcccc
Q psy3876 322 HNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCL 400 (477)
Q Consensus 322 e~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi 400 (477)
++|+|++++++||..+.++.++..||.|++|+++. +|++++++|.+||||||||+++++++|+.+|||||||||||||+
T Consensus 304 ~~i~r~aak~lfg~~v~~~t~k~~rN~Df~e~tl~~~geill~~a~~yGFRNiQNlvrklkk~k~pyhyvEVmACpgGC~ 383 (459)
T KOG2439|consen 304 EHIFRHAAKELFGEIVEPVTYKELRNSDFREVTLEKNGEILLRFAAAYGFRNIQNLVRKLKKGKFPYHYVEVMACPGGCI 383 (459)
T ss_pred HHHHHHHHHHhcCCcccchhhhhhccccceeeeeecCchHHHHHHHhhhhhHHHHHHHHHhccCCCcceeEEeccCcccc
Confidence 99999999999999888889999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHhhCCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeeccccCCCcccCCCC
Q psy3876 401 NGGAQIRNEKVASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALNVKW 477 (477)
Q Consensus 401 ~Gggq~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~~~~~~~~~~~~w 477 (477)
|||||.+.++....+++++.++++|.+.+.+.+++.|.+.+||++|+.+ ++..+..+|||+||+|++.+.++.++|
T Consensus 384 NGgGQl~~~~~~~~~~llq~ve~ly~e~~~~~~e~~~~~~~L~E~w~k~-~~~~~r~~Lht~y~avek~~~sl~~kW 459 (459)
T KOG2439|consen 384 NGGGQLQTPDGHARKELLQQVEALYGEIPRRRDESSPTVPKLEEEWLKG-DSKKARKVLHTDYQAVEKDVTSLGNKW 459 (459)
T ss_pred CCCccccCCccchHHHHHHHHHHhhccCccccCccccchhHHHHHHHhc-CchhhhhhhcccchhhhcchhhhccCC
Confidence 9999999877667789999999999999999998889999999999998 788899999999999999999999999
No 2
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=100.00 E-value=3.8e-88 Score=670.95 Aligned_cols=372 Identities=37% Similarity=0.588 Sum_probs=327.0
Q ss_pred ccccccccccccccchhhhhcccccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHH-HH
Q psy3876 62 LKKVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQ-VV 140 (477)
Q Consensus 62 ~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~-~~ 140 (477)
++++.+.++||.+|++|+++||+.|+..++...+...|+.+. .++.+++++||++|+++++.||++.++ ..
T Consensus 26 ~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~~~~~~le~~~--------~~k~v~v~~apsvR~al~~~~gl~~~~~~a 97 (411)
T COG4624 26 LEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEELEDLF--------CDKIVLVSNAPSVRAALAEEFGLSEGEAVA 97 (411)
T ss_pred ccccccchhhhhhhhccccCChHHhhhhcchHHHHHHhhccc--------cceEEEecCCHHHHHHHHHHhCCChhHHHH
Confidence 456679999999999999999999999888666666565432 268899999999999999999999886 47
Q ss_pred HHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHHhhcC-CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHH
Q psy3876 141 AKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSG-GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMG 219 (477)
Q Consensus 141 ~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~~~~~-~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g 219 (477)
.++..++|++||++|+||+++||++++|++.||.+|++++ .+|||||||||||+|+||+||+ |+||||+|+|||||+|
T Consensus 98 ~~~~~f~k~~gf~~vvdt~fgad~vi~eea~Ef~~r~~~n~~lP~~tscCPgwV~~~Ekt~P~-Ll~~LS~vkSPQq~~g 176 (411)
T COG4624 98 VLMSFFLKKLGFDKVVDTNFGADMVIMEEAAEFLERVKKNDDLPLFTSCCPGWVNYAEKTYPN-LLPNLSSVKSPQQALG 176 (411)
T ss_pred HHHHHHHHHcChHhhhhhhhccchHHHHHHHHHHHHHhcCCCCceeeccChHHHHHHHHhhHH-HHhhccccCCHHHHHH
Confidence 8899999999999999999999999999999999998775 7899999999999999999999 8999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcEEEEEEEccccchhhhhcccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCC
Q psy3876 220 SLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDW 299 (477)
Q Consensus 220 ~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~ 299 (477)
+++|++|++++|+.|+++||||||||+|||+||.|++. ++ ++||+||||+||.+||+..+| ++..+|+.++|.
T Consensus 177 ~~iK~~~~~~~~~~~e~~~~VsiMPC~aKK~Ea~r~~~----ng-~~iD~vLTtrEL~~ml~~l~i--d~~~lp~~~~~s 249 (411)
T COG4624 177 SLIKTYYAEKLGIAPEDVYHVSIMPCIAKKLEADRDED----NG-RAIDFVLTTRELVKMLKELRI--DFARLPDGHYDS 249 (411)
T ss_pred HHHHHHhhhhcCCCccceeEEEEecchhhhhhhcCccc----cC-cceeEEecHHHHHHHHHHhCC--CHhHCCCCCccc
Confidence 99999999999999999999999999999999999831 23 799999999999999999999 999999999999
Q ss_pred CCCCCCccccccccccCchhHHHHHHHHHHHHhCCCCCCCcceeeccCCCcEEEEEe-CCceeEeEEEEeChHHHHHHHH
Q psy3876 300 PWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFT-CGDVTLRFCIANGFRNIQNLIQ 378 (477)
Q Consensus 300 ~~~~~s~~~~~~~~~~~sGG~~e~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~ 378 (477)
+.+..+++++ +||.+|||+++++++ ..+.++.+..++++.+| .+|++.... +|. .++.++++|.+|++++++
T Consensus 250 ~~g~~sga~~---lfG~tGgv~e~v~~~--~l~~~~~~e~v~~~~~~-~gI~~~e~~l~g~-~~k~~vv~G~~n~~~~~~ 322 (411)
T COG4624 250 PAGFSSGAGL---LFGSTGGVMEAVLRT--RLLHDKHIEAVDSEEVR-RGIQEAERKLGGS-SRKIAVVEGVKNVRNFFK 322 (411)
T ss_pred cccccccccc---cCCCcccEEEEeecc--ccccccchhhhhhhhhh-ccchhhhhhccCc-ceeeeeeehHHHHHHHHH
Confidence 8887766543 799999999999985 44556666667777777 678887766 454 379999999999999999
Q ss_pred HHHcCCCCCcEEEecCCCccccCCCCcccCCCCCChHHHHHHHHHHHh---hCCCCCCCCcHHHHHHHHHHhCCCCCccc
Q psy3876 379 KLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILC---DLAKSEPRENATLEHLYKAWLGGKSTDKG 455 (477)
Q Consensus 379 ~i~~g~~~~~fiEvmACpgGCi~Gggq~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~n~~~~~ly~~~l~~~~~~~~ 455 (477)
+.+.+...|+|||||||||||||||||+... +....|...+|. ..+.+.++||+.+..+|++|++.| .+
T Consensus 323 ~~~~~~~~~~fiEvmACpGGCinGgGq~~~~-----~~~~~R~~~~~~~~~~~~~~~svd~~~~~k~le~~~~~p---l~ 394 (411)
T COG4624 323 STTADEYRYDFIEVMACPGGCINGGGQPYVE-----RNDKERASVLQTKNGREPKLKSVDNLALKKMLEEYVKDP---LS 394 (411)
T ss_pred hcccCCCcceEEEEeccCccccCCCCCcChh-----hhHHHHHHHHHhhhccCCceeecCcHHHHHHHHHHhcCc---cc
Confidence 9988889999999999999999999999882 233445555554 357788999999999999999987 78
Q ss_pred ccceeeeec
Q psy3876 456 KHMLNTSYH 464 (477)
Q Consensus 456 ~~llht~y~ 464 (477)
|++|||.|+
T Consensus 395 ~e~lh~~y~ 403 (411)
T COG4624 395 HELLHTKYK 403 (411)
T ss_pred HHHhcchhh
Confidence 899999998
No 3
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=100.00 E-value=1.2e-84 Score=672.77 Aligned_cols=362 Identities=32% Similarity=0.560 Sum_probs=310.1
Q ss_pred CCccccc---cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccChHHHHH
Q psy3876 21 PSQECIK---PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQSHEEVMK 97 (477)
Q Consensus 21 ~~~~CI~---c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~~~ 97 (477)
+..+|+. |+++|+..+ ....+...+++....+.+. ....|+.++|+.||+|+++||++|+..++ ++.+
T Consensus 5 d~~kCi~Cg~Cv~~CP~~a--i~~~~~~~~~~~~~~~~~~-----~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~~--~~~~ 75 (374)
T TIGR02512 5 DMSKCIGCGRCVRACTNVQ--IVGALGFLNRGGKTEVAPK-----FGRLLDESNCIGCGQCSLVCPVGAITEKD--HVDR 75 (374)
T ss_pred chhhCCcChHhhhhCCHhh--ccccccccccCCccccccc-----cccccCcccCcCccCHHHhCCCChhhhhc--cHHH
Confidence 3445554 558999864 1112233334433333211 12358889999999999999999998875 5666
Q ss_pred HHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCH-HHHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHH
Q psy3876 98 VIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSH-EQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDR 176 (477)
Q Consensus 98 ~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~-~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~ 176 (477)
+++.+++ ..+.+|+++||++++|++++|+++. ..++.+|..+||++||++|+||++++|++++|++.||+++
T Consensus 76 v~~~l~~-------~~~~~v~~~ap~~~~s~ge~~~~~~~~~~~~~l~~~lk~lGf~~v~et~~~ad~~~~e~~~e~i~~ 148 (374)
T TIGR02512 76 VLKALAD-------PKKVVVVQIAPAVRVALGEEFGMPIGTDVTGKMVAALRKLGFDYVFDTNFAADLTIMEEGTELLER 148 (374)
T ss_pred HHHHhcc-------ccceEEEEeChHHHHHHHHHhCCCccchHHHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHHH
Confidence 6776653 2244599999999999999999875 3468999999999999999999999999999999999999
Q ss_pred hhcC-CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccchhhhhcc
Q psy3876 177 FLSG-GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRA 255 (477)
Q Consensus 177 ~~~~-~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~ 255 (477)
++++ ++|||||||||||+||||+||+ |+|||||++|||+++|+++|++++++.|++|++++|||||||+|||+||.|+
T Consensus 149 ~~~~~~~p~itS~CP~~v~~iek~~P~-li~~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~r~ 227 (374)
T TIGR02512 149 LKNGGKLPMFTSCCPGWVNYAEKYYPE-LLPNLSSCKSPQQMLGAVIKTYWAKKMGIDPEDVYVVSIMPCTAKKDEAQRP 227 (374)
T ss_pred hhcCCCCCeEecCCHHHHHHHHHHChh-hhccccCCCChHHHHHHHHHHHhHHHcCCCcccEEEEEEECcccchhhhcCc
Confidence 8654 5699999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHHHHHHHHHHHHhCCC
Q psy3876 256 DFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPG 335 (477)
Q Consensus 256 ~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~e~v~~~~~~~~~~~ 335 (477)
++..+ +.++||+||||+||.+||++++| ++.++++.++|.+++..++ .++.|+.||||+++++|++++.+++.
T Consensus 228 ~~~~~--~~~~vD~vlT~~El~~~~~~~~i--~~~~~~~~~~d~~~~~~~~---~~~~f~~sGG~~~~~~~~~~~~~~~~ 300 (374)
T TIGR02512 228 ELKSD--GYRDVDAVLTTRELARMIKEAGI--DFAKLPDSQFDSPFGEYSG---AGAIFGATGGVMEAALRTAYEIVTGK 300 (374)
T ss_pred hhccc--CCCcccEEeeHHHHHHHHHHcCC--ChhhCCCcccccccccCCc---cccccCCcccHHHHHHHHHHHHhcCC
Confidence 87432 34799999999999999999999 9999998899988765443 35689999999999999999999998
Q ss_pred CCCCcceeeccC-CCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCccc
Q psy3876 336 ESPVVEFKPLRN-PDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIR 407 (477)
Q Consensus 336 ~~~~~~~~~~~~-~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~~ 407 (477)
+...++|+.+|| .|++|+++. +| ..+++++|||++|+|++|++|++|+.+|+|||+|||||||+|||||++
T Consensus 301 ~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~G~~~~~~~l~~~~~g~~~~~fiE~maC~gGCi~G~g~~~ 373 (374)
T TIGR02512 301 ELELIEFKAVRGLDGVKEATVDIGG-TKVKVAVAHGLGNARKLLDDVKAGEADYHFIEVMACPGGCVNGGGQPK 373 (374)
T ss_pred CCcccceeeecCCCCeEEEEEEECC-EEEEEEEEeCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCCCccC
Confidence 888899999999 589999998 77 568999999999999999999999999999999999999999999986
No 4
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters. They can use molecular hydrogen for the reduction of a variety of substances.; PDB: 3LX4_A 1HFE_L 1GX7_A 1E08_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A.
Probab=100.00 E-value=1.4e-78 Score=606.05 Aligned_cols=283 Identities=44% Similarity=0.686 Sum_probs=241.6
Q ss_pred cEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHHhhcC-CCCcccccChhH
Q psy3876 114 KTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSG-GGPLFTSECPGW 192 (477)
Q Consensus 114 ~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~~~~~-~~p~itS~CP~~ 192 (477)
|.+||+||||++++|++.|+++..+++.+|..+||+|||++|+||++|||+++.++++||++++.++ ++||||||||||
T Consensus 1 K~vva~iaPs~~~~f~~~~~~~~~~~~~~l~~~Lk~lGf~~V~d~a~gadl~~~~~~~e~~~~~~~~~~~p~itS~CP~~ 80 (285)
T PF02906_consen 1 KKVVASIAPSFRAQFAEKFGLSPGEAPGQLVSALKKLGFDYVFDTAFGADLVILEEAEEFIERKEEGKPLPMITSCCPGW 80 (285)
T ss_dssp -EEEEEE-HHHHHTGGGGGT--TTSSHHHHHHHHHHTT-SEEEEHHHHHHHHHHHHHHHHHHHHCCTSSSSEE-TTSHHH
T ss_pred CEEEEEECchhHHHHHhHhCcChhhHHHHHHHHHHHcCCCEEEECHHHHHHHHHHHHHHHHHhhcccCCCceEecccHHH
Confidence 4689999999999999999999888899999999999999999999999999999999999998653 569999999999
Q ss_pred HHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccchhhhhcccccccccCCCCccEEeC
Q psy3876 193 VCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVIT 272 (477)
Q Consensus 193 V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~VD~VLT 272 (477)
|+|+||+||+ |+|||||++|||+++|+++|++++++.|+.+.+++|||||||+|||+||.|+++.. +.++||+|||
T Consensus 81 V~~iek~~P~-li~~ls~v~SP~~~~g~~~K~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~---~~~~vD~VLT 156 (285)
T PF02906_consen 81 VCYIEKYYPE-LIPNLSPVKSPMQIMGRLIKKYFAEESGIKPPDIYVVFIMPCIAKKLEASRPEFSG---GSPDVDYVLT 156 (285)
T ss_dssp HHHHHHH-GG-GGGGB-SB-THHHHHHHHHTTHHHHHCT--GGGEEEEEEES-SHHHHHHTSTTCEC---TCESSSEEEE
T ss_pred HHHHHHhCcc-cccccCCCccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEcCccccccccCccccC---CCcccCEech
Confidence 9999999999 89999999999999999999999999999999999999999999999999998732 3469999999
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHHHHHHHHHHHHhCCCCCCCcceeeccC-CCcE
Q psy3876 273 AVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRN-PDIR 351 (477)
Q Consensus 273 ~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~e~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~ 351 (477)
|+||.+||++.+| ++.++++.++|.++...+ ..++.|+.||||++++++++.+.+++.+++.++++.+|| .|++
T Consensus 157 ~~El~~~l~~~~i--~~~~~~~~~~d~~~~~~s---~~~~~f~~sGG~~~~v~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 231 (285)
T PF02906_consen 157 FEELAELLKEKGI--DLAELEPEPFDNPFGESS---GAGRIFGSSGGVAEAVLRYAAEKLFGEDLPNVEIEKVRGKEDIK 231 (285)
T ss_dssp HHHHHHHHHHTT----GGGSS--B--CTTSSSC---HHHCCCCSTTHHHHHHHHHHHHHHHSSTTS-S--GGGTSSTSEE
T ss_pred HHHHHHHHHHcCC--ChhHCCCccccchHHHhh---hhhhccccCchHHHHHHHHHHHHhcCCCCCcceeEeccCCCCeE
Confidence 9999999999999 999999999998876543 345789999999999999999999999988899999999 5899
Q ss_pred EEEEeCCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCcc
Q psy3876 352 EATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQI 406 (477)
Q Consensus 352 ~~~l~~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~ 406 (477)
++++..|+ .+++++++||+|+|++|+++++|+.+|||||+|||||||+|||||+
T Consensus 232 e~~~~~g~-~~~~~~~~G~~n~~~~l~~ik~g~~~~~~iEvmaCpgGCinGgGq~ 285 (285)
T PF02906_consen 232 EATVEIGK-ELRFAVVYGFRNIQNLLRKIKKGKSEYDFIEVMACPGGCINGGGQP 285 (285)
T ss_dssp EEEEEETT-EEEEEEEESHHHHHHHHHHHHTTSS--SEEEEESSTTSGGGCTTS-
T ss_pred EEEEeccc-ceEEEEecCHHHHHHHHHHhhccCCCCeEEEECCCCCcccCCCCCC
Confidence 99999444 4699999999999999999999999999999999999999999996
No 5
>PF02256 Fe_hyd_SSU: Iron hydrogenase small subunit; InterPro: IPR003149 Many microorganisms, such as methanogenic, acetogenic, nitrogen-fixing, photosynthetic, or sulphate-reducing bacteria, metabolise hydrogen. Hydrogen activation is mediated by a family of enzymes, termed hydrogenases, which either provide these organisms with reducing power from hydrogen oxidation, or act as electron sinks. There are two hydrogenases families that differ functionally from each other: NiFe hydrogenases tend to be more involved in hydrogen oxidation, while Iron-only FeFe (Fe only) hydrogenases in hydrogen production. Fe only hydrogenases (1.12.7.2 from EC) show a common core structure, which contains a moiety, deeply buried inside the protein, with an Fe-Fe dinuclear centre, nonproteic bridging, terminal CO and CN- ligands attached to each of the iron atoms, and a dithio moiety, which also bridges the two iron atoms and has been tentatively assigned as a di(thiomethyl)amine. This common core also harbours three [4Fe-4S] iron-sulphur clusters []. In FeFe hydrogenases, as in NiFe hydrogenases, the set of iron-sulphur clusters is dispersed regularly between the dinuclear Fe-Fe centre and the molecular surface. These clusters are distant by about 1.2 nm from each other but the [4Fe-4S] cluster closest to the dinuclear centre is covalently bound to one of the iron atoms though a thiolate bridging ligand. The moiety including the dinuclear centre, the thiolate bridging ligand, and the proximal [4Fe-4S] cluster is known as the H-cluster. A channel, lined with hydrophobic amino acid side chains, nearly connects the dinuclear centre and the molecular surface. Furthermore hydrogen-bonded water molecule sites have been identified at the interior and at the surface of the protein. The small subunit is comprised of alternating random coil and alpha helical structures that encompass the large subunit in a novel protein fold [].; PDB: 3LX4_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A 1HFE_S 1GX7_D 1E08_D.
Probab=99.31 E-value=5e-13 Score=102.22 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhh---CCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeeccc
Q psy3876 415 KETALELETILCD---LAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNI 466 (477)
Q Consensus 415 ~~~~~r~~~~~~~---~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~~ 466 (477)
+.+.+|++.+|.. .+++.|++||.|++||++|||+|+++++|+||||+|+++
T Consensus 5 ~~~~~R~~~LY~~d~~~~~r~s~eNp~v~~lY~~~lg~p~s~~ah~lLHT~Y~~r 59 (60)
T PF02256_consen 5 EIRLKRAEGLYNIDKSSPLRKSHENPEVQELYKEFLGGPGSEKAHELLHTHYHDR 59 (60)
T ss_dssp CHHHHHHHHHHHHHHHTSB-SGGG-HHHHHHHHHTTSSTTSHHHHHHHB----T-
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHhCCCCchHHHHHhCcCccCC
Confidence 4678999999974 569999999999999999999999999999999999987
No 6
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.77 E-value=3.3e-09 Score=116.58 Aligned_cols=167 Identities=9% Similarity=-0.041 Sum_probs=107.6
Q ss_pred CCCCCcccccCCCCCCC----cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccc
Q psy3876 2 ASSRFSGVLQLTDLDDF----IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLA 74 (477)
Q Consensus 2 ~~~~fs~~~~~~~ldD~----i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~ 74 (477)
.+++|....+.-.-.|+ ..+.++||.|. |.|.+. .|...|.+.+||....|++..+.++. + ..
T Consensus 119 ~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RCVR~c~ei--aG~~~l~~~~rg~~~~i~t~~~~~l~----s----e~ 188 (693)
T COG1034 119 SHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRCVRFCKEI--AGTHELGVIKRGENSEIGTYLDQPLE----S----EL 188 (693)
T ss_pred CcccccccccccccccccchhhcccccceechhhHHhhhhh--cCccccceeecCCCceeecccccccc----c----cc
Confidence 34666665542222222 47889999877 789998 78999999999999999877655321 1 89
Q ss_pred cchhhhhcccccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcE
Q psy3876 75 CSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDL 154 (477)
Q Consensus 75 Cg~Cv~~Cp~~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~ 154 (477)
||+||.+||+|||+.+++.-..+.|+.. ..+.++..+|..+.-..+.++........++...+....+.
T Consensus 189 cGncv~vCPvGALt~K~~~~~ar~wEl~----------k~~si~~~~a~g~~i~~d~r~~ev~ri~~r~n~~vNe~~~~- 257 (693)
T COG1034 189 CGNCVDVCPVGALTSKPFAFTARKWELK----------KTPSICVHCAVGCNIRVDERYGEVRRILPRYNEVVNEEWLC- 257 (693)
T ss_pred ccceeeeccccccccChHHhhhccchhc----------cCceeeccCccccceeecccccchhhhcccchhHHHHHHhc-
Confidence 9999999999999999875555555532 35667777775555555555543333344555555544444
Q ss_pred EEECccchhhhHHHHHHHHHHHhhcCCCCcccccChhHHH
Q psy3876 155 VLDVGIAHCFSLVELENEFLDRFLSGGGPLFTSECPGWVC 194 (477)
Q Consensus 155 V~Dt~~~ad~~~~e~~~e~~~~~~~~~~p~itS~CP~~V~ 194 (477)
..+-|+.|....+. .+...+. ++. ....++++|..
T Consensus 258 -d~~RF~~d~~~~~~-~~~p~~~-~~~--~~~~~~~~~a~ 292 (693)
T COG1034 258 -DKGRFAYDGLNLQR-LDRPKIR-VGG--RLVEASWLEAN 292 (693)
T ss_pred -ccccccccccccch-hcccchh-cCC--eeeecChHHHH
Confidence 66778888876665 3333322 223 44444555444
No 7
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.61 E-value=9.7e-09 Score=110.80 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=58.8
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.+++.||.|. |+|.+. ++...|.|..+|..++|.-....+ |+++.|++||+||++||++|+..++
T Consensus 145 ~ydp~qCIlCgRCVeaCqev--qv~eaL~i~w~~~~pRV~wd~~~~-----i~~SSCVsCG~CvtVCP~nALmek~ 213 (978)
T COG3383 145 IYDPNQCILCGRCVEACQEV--QVNEALTIDWRGEDPRVIWDNDVP-----INESSCVSCGACVTVCPVNALMEKS 213 (978)
T ss_pred EecchheeehhHHHHHHHhh--hceeEEEeecccCCcceecCCCCc-----cccccccccCccceecchhhhhhhh
Confidence 77999999888 689987 889999999999999997666544 9999999999999999999998876
No 8
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.27 E-value=5.7e-07 Score=99.37 Aligned_cols=79 Identities=11% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCCcccccC---CCCCCC-cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCccccccccccccccccccc
Q psy3876 3 SSRFSGVLQL---TDLDDF-IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLAC 75 (477)
Q Consensus 3 ~~~fs~~~~~---~~ldD~-i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~C 75 (477)
.++|....+. .+.+.| ..+.++||+|. |+|.+. +|..+|.+.+||..+.|.+....+ + +|..|
T Consensus 118 ~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~--~g~~~l~~~~rg~~~~i~~~~~~~-----~---~~~~c 187 (603)
T TIGR01973 118 RSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEV--AGVEDLGVIGRGNNVEIGTYEGKT-----L---ESELS 187 (603)
T ss_pred CCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHh--hCCceEEEeccCCCCEEecCCCCC-----C---CCccc
Confidence 3566554332 234445 45889999777 789887 789999999999999998755432 2 47789
Q ss_pred chhhhhcccccccccC
Q psy3876 76 SGCITSAESVLITQQS 91 (477)
Q Consensus 76 g~Cv~~Cp~~ai~~~s 91 (477)
|+||.+||+|||..+.
T Consensus 188 g~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 188 GNLIDICPVGALTSKP 203 (603)
T ss_pred CChHhhCCcccccccc
Confidence 9999999999999876
No 9
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.26 E-value=7e-07 Score=88.29 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=54.7
Q ss_pred CCCC-cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 15 LDDF-IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 15 ldD~-i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.| ..+.++||+|. |+|.+. ++.++|.+.+||..+.|.+..+.. . ...| .||+|+.+||+|||...
T Consensus 203 ~~p~i~~D~nKCIlCgRCVRaC~EV--qg~~aL~~~~RG~~t~I~t~~d~~-----~-~~~~-~~g~cvdvCPvGAL~~~ 273 (297)
T PTZ00305 203 FDPQTRVVLNRCIHCTRCVRFLNEH--AQDFNLGMIGRGGLSEISTFLDEL-----E-VKTD-NNMPVSQLCPVGKLYLG 273 (297)
T ss_pred CCCceeecCCcCcCccHHHHHHHHh--hCCcEEEEeecCCCCEEeecCCCc-----c-cccC-CCCceeeECCCcccccC
Confidence 4444 34789999887 789997 889999999999999998766532 1 2223 47889999999999887
Q ss_pred ChHH
Q psy3876 91 SHEE 94 (477)
Q Consensus 91 s~~~ 94 (477)
+.++
T Consensus 274 d~~~ 277 (297)
T PTZ00305 274 DADE 277 (297)
T ss_pred Cccc
Confidence 7544
No 10
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.19 E-value=2.4e-06 Score=86.02 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=73.0
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC-hHH
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS-HEE 94 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s-~~~ 94 (477)
..+.++|+.|. .+|+..+ +.+..... ....+.++...|+.||.|+.+||++|+...+ ..+
T Consensus 44 ~~~~~~C~~C~~C~~~Cp~~a------~~~~~~~~----------~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t 107 (295)
T TIGR02494 44 LFKENRCLGCGKCVEVCPAGT------ARLSELAD----------GRNRIIIRREKCTHCGKCTEACPSGALSIVGEEMT 107 (295)
T ss_pred EEccccCCCCchhhhhCcccc------cccccccC----------CCcceeechhhcCchhHhhccCcHhHHhhhccCCc
Confidence 44667888777 6788753 32211000 0123457888999999999999999997753 223
Q ss_pred HHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccch
Q psy3876 95 VMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAH 162 (477)
Q Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~a 162 (477)
..++++.+.+... .. ....-.|++++ +|.+ ...+...+++..+|+.|+...++|+...
T Consensus 108 ~eel~~~i~~~~~-~~-~~~~~~V~~sG------GEPl--l~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 108 VEEVMRVVLRDSI-FY-RNSGGGVTLSG------GEPL--LQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred HHHHHHHHHHHHH-hc-ccCCCcEEeeC------cchh--chHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 4444444432000 00 00001356676 8875 3445567889999999999999999763
No 11
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.14 E-value=1.6e-06 Score=98.75 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=53.1
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..+.++||+|. |+|.+. +|..+|.+.+||..+.|.+....+ + +|..||+||++||+|||+.+.
T Consensus 146 ~~d~~rCI~C~rCvr~c~ev--~g~~~l~~~~rg~~~~i~~~~~~~-----~---~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 146 LLDRERCVLCARCTRFSDQI--AGDPFIDLQERGALQQVGIYEGEP-----F---QSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred eecccccccCcHHHHHHHhh--cCCcEEEeeecCCCCEEecCCCCC-----c---CccccCCchhhCCcccccccc
Confidence 55889999777 789887 899999999999999998655432 1 468999999999999998775
No 12
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.13 E-value=1.4e-06 Score=98.35 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=52.4
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCccc----------cccccccc-----ccccccccchhhh
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGRE----------EKLKKVEI-----SLTDCLACSGCIT 80 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~----------~~~~~a~I-----~~~~Ci~Cg~Cv~ 80 (477)
..+.++||.|. |+|++. +|..+|.+..||..+.+..-.+ .+..+..| ...+|+.||+|+.
T Consensus 137 ~~D~~rCI~C~RCVr~C~ev--~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~ 214 (819)
T PRK08493 137 NYDPSLCIVCERCVTVCKDK--IGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIA 214 (819)
T ss_pred EechhhcccccHHHhhCccc--ccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHH
Confidence 45999999777 799998 8889999999999876542100 00111111 2579999999999
Q ss_pred hcccccccccC
Q psy3876 81 SAESVLITQQS 91 (477)
Q Consensus 81 ~Cp~~ai~~~s 91 (477)
+||++||..+.
T Consensus 215 VCPvGAL~~k~ 225 (819)
T PRK08493 215 VCPVGALSSSD 225 (819)
T ss_pred hCCCCccccCc
Confidence 99999998765
No 13
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.11 E-value=2e-06 Score=96.19 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=59.1
Q ss_pred CCCcccccCCCCC---CC-cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc
Q psy3876 4 SRFSGVLQLTDLD---DF-IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS 76 (477)
Q Consensus 4 ~~fs~~~~~~~ld---D~-i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg 76 (477)
++|....+..+.+ .+ ..+.++||+|. |.|.+. +|..++++.+||..++|++..... + +|..||
T Consensus 122 ~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev--~g~~~l~~~~rg~~~~i~~~~~~~-----~---~~~~~G 191 (687)
T PRK09130 122 SRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEV--AGVPELGAIGRGEDMEITTYLEQA-----L---TSELSG 191 (687)
T ss_pred CCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhh--cCCceEEeeecCCCCEEccCCCCC-----c---cccccc
Confidence 5676544333322 22 34779999877 789887 799999999999999998765432 2 478899
Q ss_pred hhhhhcccccccccC
Q psy3876 77 GCITSAESVLITQQS 91 (477)
Q Consensus 77 ~Cv~~Cp~~ai~~~s 91 (477)
+||++||+|||+.+.
T Consensus 192 ~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 192 NVIDLCPVGALTSKP 206 (687)
T ss_pred cHHhhCCCccccccc
Confidence 999999999999876
No 14
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.09 E-value=2.2e-06 Score=97.48 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCcccccC---CCCCCCcC-CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc
Q psy3876 4 SRFSGVLQL---TDLDDFIG-PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS 76 (477)
Q Consensus 4 ~~fs~~~~~---~~ldD~i~-~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg 76 (477)
++|....+. .++++||. +.++||.|. |+|.+. +|..+|.+.+||..+.|.+....+ + +|..||
T Consensus 121 ~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev--~g~~~l~~~~rg~~~~i~~~~~~~-----~---~~~~cg 190 (776)
T PRK09129 121 SRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEI--AGVMELGMMGRGEHSEITTYVGKT-----V---DSELSG 190 (776)
T ss_pred CccccccccCCccCCCcceeecccccccCcHHHHHHHHh--cCCceeeeeccCCCCEEcCCCCCC-----c---cCcccC
Confidence 456543322 34455644 889999777 789987 789999999999999998765432 2 466799
Q ss_pred hhhhhcccccccccC
Q psy3876 77 GCITSAESVLITQQS 91 (477)
Q Consensus 77 ~Cv~~Cp~~ai~~~s 91 (477)
+||.+||+|||..+.
T Consensus 191 ~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 191 NMIDLCPVGALTSKP 205 (776)
T ss_pred CchhhCCcccccccc
Confidence 999999999998875
No 15
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.05 E-value=4.1e-06 Score=93.24 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=79.4
Q ss_pred cccccccc-------hhhhhcccccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHH-HH
Q psy3876 69 LTDCLACS-------GCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQ-VV 140 (477)
Q Consensus 69 ~~~Ci~Cg-------~Cv~~Cp~~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~-~~ 140 (477)
..+|..|+ .|+.+||++||...+..++.....+. +.+.++++.||++|+++++.||+.++. .+
T Consensus 109 ~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~~~~---------~~~~~~~~~~p~~r~~~~~~~~~~~~r~~~ 179 (639)
T PRK12809 109 AQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKVAR---------QRKTAAGKASSDAQPSRSAALLPVNSRKGA 179 (639)
T ss_pred cccccCCcccCCCCChhhhhCccceEEEechHHHHHHHHHh---------hhhhcccccCcccccchHHHhCCCccccCc
Confidence 35788887 59999999998877654454444332 246789999999999999999988664 58
Q ss_pred HHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHHhhcCCCCcccccChh------HHHHHH
Q psy3876 141 AKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGGGPLFTSECPG------WVCYAE 197 (477)
Q Consensus 141 ~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~~~~~~~p~itS~CP~------~V~yiE 197 (477)
.++....|.++|+.|++. +..+. .+.++..=++= +..|.=.+.||. |+.++.
T Consensus 180 ~~~~~~~R~~~f~Ev~~~-~~~~~-~~~ea~rC~~C---~~~~~C~~~CP~~~~i~~~~~~~~ 237 (639)
T PRK12809 180 DKISASERKTHFGEIYCG-LDPQQ-ATYESDRCVYC---AEKANCNWHCPLHNAIPDYIRLVQ 237 (639)
T ss_pred ccCCHHHHhcCHHHhhcc-CCHHH-HHHHHHHHhCC---CCCCcccccCCCCCcHHHHHHHHH
Confidence 899999999999998874 33332 23333333321 124666678975 666444
No 16
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.94 E-value=2.4e-06 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=21.2
Q ss_pred cccccccccccchhhhhcccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
++|+.++|++||.|+.+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 56899999999999999999886
No 17
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.83 E-value=1.4e-05 Score=59.64 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=30.4
Q ss_pred cccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccc
Q psy3876 24 ECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 24 ~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
+||.|. ++||... +.+..++......... .....++|+.||.|+.+||++||
T Consensus 1 kCi~Cg~C~~~CP~~~------~~~~~~~~~~~~~~~~------~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGV------IEFDEDGGKKVVDKDN------ERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-------EEEETTTTCEECSECC------ESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccC------eEccCccccccccccc------cCCCCCccccHhHHHHHcchhhC
Confidence 355555 8999864 6666555443322111 11267799999999999999997
No 18
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.80 E-value=5.8e-06 Score=63.08 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccc-cccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAES-VLIT 88 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~-~ai~ 88 (477)
+.++||.|+ ++|+..+ ...+.+.++ +++.++.++|++||.|+.+||+ +||+
T Consensus 4 d~~~Ci~Cg~C~~~Cp~~~---~~~i~~~~~--------------~~~~v~~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 4 DEDKCIGCGKCVRACPDGA---IDAIEVDEG--------------KKVPVNPDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp -TTT----SCCCHHCCCCS----S-ECCTTT--------------TSSECE-TT--S-SCCCCCSSSTTSEE
T ss_pred CcccccChhhHHhHcCccc---eeeEEecCC--------------eeEEeccccCcCcCcccccCCCccCCC
Confidence 557888777 7899743 222322221 2335778999999999999997 9986
No 19
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=97.79 E-value=1.5e-05 Score=91.46 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCCCCc-CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 14 DLDDFI-GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 14 ~ldD~i-~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+++.|| .+.++||+|. |+|.+. +|..++.+.+||....++..... .-+|..||+||.+||+|||+.
T Consensus 139 ~~~~~i~~d~~rCi~C~rCVr~c~e~--~g~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~G~cv~vCP~GAl~~ 208 (847)
T PRK08166 139 DLGPFISHEMNRCIACYRCVRYYKDY--AGGTDLGVYGAHDNVYFGRPEDG--------TLESEFSGNLVEVCPTGVFTD 208 (847)
T ss_pred CCCCceEecCCcCccccHHHHHHHhh--cCcceEEEeecCceeEecCCCCC--------cccChhhCChHhhCCchhccc
Confidence 345554 4889999776 799988 78899999999999888754322 126889999999999999988
Q ss_pred cC
Q psy3876 90 QS 91 (477)
Q Consensus 90 ~s 91 (477)
+.
T Consensus 209 k~ 210 (847)
T PRK08166 209 KT 210 (847)
T ss_pred cc
Confidence 76
No 20
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.74 E-value=2e-05 Score=76.85 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=48.2
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccCh
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQSH 92 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~ 92 (477)
..+.++||.|. ++|+.. ++...+....+|....+...... ..++...|+.||.|+.+||++||..++.
T Consensus 142 ~~d~~kCi~Cg~Cv~aC~~i--~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 142 GIDHNRCVLCTRCVRVCDEI--EGAHTWDVAGRGAKSRVITDLNQ----PWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred EeehhhCcCccHHHHHHHHh--cCCceeeecccCCcceEeecCCc----cccccccccchHHHHHhCCCCcEEecCC
Confidence 44678999888 688864 44455666667766655433221 2345568999999999999999998874
No 21
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.71 E-value=1.3e-05 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.0
Q ss_pred ccccccccccchhhhhccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
.|+.+.|++||.|+.+||++||+
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSSEE
T ss_pred EEchHHCCCcchhhhhcccccCC
Confidence 47889999999999999999984
No 22
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.68 E-value=3e-05 Score=71.81 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=39.0
Q ss_pred ccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 23 QECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 23 ~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..||-|. ++||..+ |.+....... ++. .....-.|+..+||.||.|+.+||++||....
T Consensus 55 ~~CIgC~lCa~iCP~~a------I~m~~~~~~~---~g~-~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~ 116 (172)
T COG1143 55 DKCIGCGLCANICPANA------ITMETAERKV---DGR-KKPKRPDINLGRCIFCGLCVEVCPTGALVLTP 116 (172)
T ss_pred cCCcchhHHHhhCCcCc------eEEEEcccCC---CCc-cccccceeccccccccCchhhhCchhhhcCCc
Confidence 3477665 8999976 5554221110 111 11234469999999999999999999997643
No 23
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.41 E-value=7.5e-05 Score=77.91 Aligned_cols=66 Identities=23% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCcCCCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC-hHHH
Q psy3876 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS-HEEV 95 (477)
Q Consensus 17 D~i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s-~~~~ 95 (477)
|.=.|...+.-|.+.||..- .|...|.|.++ .+|..|+++.|++||-|+.-||++||..-+ .+++
T Consensus 11 D~C~PkkC~~eC~~yCP~vr-tg~~~I~i~~~-------------~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~eL 76 (591)
T COG1245 11 DRCQPKKCGYECIKYCPVVR-TGKETIEIDED-------------TGKPVISEELCIGCGICVKKCPFDAISIVNLPEEL 76 (591)
T ss_pred hccCccccchhhhhcCCCcc-CCCeeEEecCC-------------CCCceeEhhhhccchhhhccCCcceEEEecCchhh
Confidence 44556666688999999975 56666777642 245579999999999999999999999877 4444
Q ss_pred H
Q psy3876 96 M 96 (477)
Q Consensus 96 ~ 96 (477)
.
T Consensus 77 e 77 (591)
T COG1245 77 E 77 (591)
T ss_pred c
Confidence 3
No 24
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=97.32 E-value=6.4e-05 Score=55.55 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=26.4
Q ss_pred ccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccc
Q psy3876 25 CIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 25 CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
|-.|+.+||..+ |.+...+.... .....++.++|+.||.|+.+||++|
T Consensus 5 C~~C~~~CP~~~------i~~~~~~~~~~--------~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 5 CGACVEACPTGA------IRLDEEENEEG--------KPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp --HHHHH-TTHH------CEEEETTT-SS--------STTSEETGGG----SHHHHHTTTS-
T ss_pred cCchHHhcCccc------cCcccccccCC--------ceEEEEechhCcCcChhhhhCcCcC
Confidence 334458999753 66654322211 1345688999999999999999986
No 25
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=97.16 E-value=0.00024 Score=56.90 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=43.5
Q ss_pred CCCCCcccccCCCCCCCcCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchh
Q psy3876 2 ASSRFSGVLQLTDLDDFIGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGC 78 (477)
Q Consensus 2 ~~~~fs~~~~~~~ldD~i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~C 78 (477)
+.++|++.+......--..+...|+.|. .+|+..+ +...+.+ ...++...|+.|+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~Cp~~a------i~~~~~~--------------~~~i~~~~C~~C~~C 63 (78)
T TIGR02179 4 PGSSVANKTGDWRVFKPVVDKEKCIKCKNCWLYCPEGA------IQEDEGG--------------FVGIDYDYCKGCGIC 63 (78)
T ss_pred ccccccccccCceeeEEEEcCCcCcChhHHHhhcCccc------eEecCCC--------------cEEecCccCcCccch
Confidence 4577777665332211133556677665 6787643 4433211 123666789999999
Q ss_pred hhhcccccccccC
Q psy3876 79 ITSAESVLITQQS 91 (477)
Q Consensus 79 v~~Cp~~ai~~~s 91 (477)
+.+||++||...+
T Consensus 64 ~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 64 ANVCPVKAIEMVR 76 (78)
T ss_pred hhhCCccccEecc
Confidence 9999999987643
No 26
>PRK13409 putative ATPase RIL; Provisional
Probab=97.13 E-value=0.00018 Score=79.32 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=45.0
Q ss_pred ccc-cccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC-hHHHHH
Q psy3876 23 QEC-IKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS-HEEVMK 97 (477)
Q Consensus 23 ~~C-I~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s-~~~~~~ 97 (477)
.+| .-|.+.||..- .|...|.+... .+++.|+++.|++||-||.-||+.||+.-+ ++++.+
T Consensus 15 ~~c~~~c~~~cp~~~-~~~~~~~~~~~-------------~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~ 77 (590)
T PRK13409 15 KKCNYECIKYCPVVR-TGEETIEIDED-------------DGKPVISEELCIGCGICVKKCPFDAISIVNLPEELEE 77 (590)
T ss_pred chhhhhHHhhCCCcc-cCCeEEEEcCC-------------CCCceeeHhhccccccccccCCcceEEEeeCchhhcc
Confidence 444 45668999874 45444555321 267889999999999999999999999887 555544
No 27
>KOG3256|consensus
Probab=97.10 E-value=0.00027 Score=63.83 Aligned_cols=58 Identities=21% Similarity=0.429 Sum_probs=39.7
Q ss_pred CcCCCccccccc---cccCCCCCCCCceEEEe----cCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 18 FIGPSQECIKPI---PIEKPSGPRTGAKIRIQ----DDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 18 ~i~~~~~CI~c~---r~c~~~~~~~~~~i~i~----~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
|-....+||.|- ++||..+ |.|+ .+|+.. ...-.|+...||.||.|+..||++||...
T Consensus 106 yp~geerCIACklCeavCPaqa------itieae~r~dgsrR---------ttrYdIDmtkCIyCG~CqEaCPvdaiveg 170 (212)
T KOG3256|consen 106 YPSGEERCIACKLCEAVCPAQA------ITIEAEERTDGSRR---------TTRYDIDMTKCIYCGFCQEACPVDAIVEG 170 (212)
T ss_pred CCCcchhhhhHHHHHHhCCccc------ceeeceecCCcccc---------ceeecccceeeeeecchhhhCCccceecc
Confidence 334457787654 8999875 3332 333221 12345899999999999999999999654
No 28
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=97.05 E-value=0.00034 Score=64.18 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCcCCCccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 17 DFIGPSQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 17 D~i~~~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
|...-...|..|- ++|+..| |...+ +.+.++.++||+||.|+.+||+|||...+
T Consensus 45 d~~~~pv~C~qCedaPC~~vCP~~A------I~~~~---------------~~v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 45 DGESAPVVCHHCEDAPCAEVCPVGA------ITRDD---------------GAVQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CCcccCCcCCCCCCcchhhhCchhh------eeecC---------------CceEEchhhccCcchhhhcCCcceEEEEe
Confidence 3334445566554 6888875 65442 34568899999999999999999998876
Q ss_pred h
Q psy3876 92 H 92 (477)
Q Consensus 92 ~ 92 (477)
.
T Consensus 104 ~ 104 (165)
T COG1142 104 Y 104 (165)
T ss_pred e
Confidence 3
No 29
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.00 E-value=0.00057 Score=59.66 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=37.3
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..+.++|+.|. ++|+..+ |.+...+ .+..++...|+.||.|+.+||++||....
T Consensus 38 ~i~~~~Ci~C~~C~~~CP~~a------i~~~~~~-------------~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 38 LYDVDKCVGCRMCVTVCPAGV------FVYLPEI-------------RKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred EECcccCcCcccHHHHCCccc------eEccccc-------------cceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 33557777766 6888643 4433211 12246778999999999999999998654
No 30
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.97 E-value=0.0005 Score=65.07 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=36.9
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.+..+||.|. +.|+..+ |...++|. ..++.++|+.||.|+.+||++||..+.
T Consensus 111 id~~~Ci~Cg~Cv~aCp~~a------i~~~~~~~--------------~~v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 111 IDEDNCIGCTKCIQACPVDA------IVGATKAM--------------HTVISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred EeCCcCCCCChhhhhCCHhh------hecccCCc--------------eeecCCcCCchHHHHHHcCcCceEEee
Confidence 3667888777 6787542 44333321 235668999999999999999998764
No 31
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.96 E-value=0.00039 Score=57.36 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.9
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.++|+.||.|+.+||++||..
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred ecCCccCcChhhhhhhCCHhHEec
Confidence 578899999999999999999865
No 32
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=96.92 E-value=0.0011 Score=63.90 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=61.6
Q ss_pred hhhcccccccccC-hHHHHHHHHHhhhccccCCCCCcEEE------EEecccchhhhhhhcCCCHHHHHHHHHHHHHHcC
Q psy3876 79 ITSAESVLITQQS-HEEVMKVIRENNAHKASSNENTKTIV------LSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLG 151 (477)
Q Consensus 79 v~~Cp~~ai~~~s-~~~~~~~l~~~~~~~~~~~~~~~~~v------vsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lG 151 (477)
+.+||++|+...+ ..++.++++.+++ ++.++ |++|+ ++. +.+.++...+...+|+.|
T Consensus 4 ~~~C~~~a~~~~g~~~t~eel~~~~~~--------~~~f~~~sggGVt~SG------GEP--llq~~fl~~l~~~~k~~g 67 (213)
T PRK10076 4 ADECPSGAFERIGRDITLDALEREVMK--------DDIFFRTSGGGVTLSG------GEV--LMQAEFATRFLQRLRLWG 67 (213)
T ss_pred hhhchhhHHHhcCcccCHHHHHHHHHh--------hhHhhcCCCCEEEEeC------chH--HcCHHHHHHHHHHHHHcC
Confidence 5689999998776 4567777777764 33332 66676 887 456678889999999999
Q ss_pred CcEEEECccchhhhHHHHHHHHHH
Q psy3876 152 VDLVLDVGIAHCFSLVELENEFLD 175 (477)
Q Consensus 152 f~~V~Dt~~~ad~~~~e~~~e~~~ 175 (477)
++.++||+.......++...++++
T Consensus 68 i~~~leTnG~~~~~~~~~l~~~~D 91 (213)
T PRK10076 68 VSCAIETAGDAPASKLLPLAKLCD 91 (213)
T ss_pred CCEEEECCCCCCHHHHHHHHHhcC
Confidence 999999999988766665555544
No 33
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.92 E-value=0.0005 Score=58.71 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=36.2
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.+.|+.|. ++|+..+ |.+.+++ ...++.++|+.||.|+.+||++||...+
T Consensus 49 d~~~Ci~C~~C~~~CP~~a------i~~~~~~--------------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEPA------IYLDEEG--------------YPVFDYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred ChhHCcChhhHHhhCCHhh------EEecCCC--------------cEEECchhCCCcCchhhhcCcCcEEEec
Confidence 556677665 6777653 5554322 1246778999999999999999997654
No 34
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.92 E-value=0.00074 Score=62.38 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=36.4
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
..+..+|+.|. +.|+..+ +....++ ...++.++|+.||.|+.+||++||...
T Consensus 109 ~id~~~Ci~Cg~C~~aCp~~a------i~~~~~~--------------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 109 LIDEDNCIGCTKCIQACPVDA------IVGAAKA--------------MHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred EEECCcCCChhHHHHhCCccc------eEecCCC--------------ceEeecccccChhHHHHhcCcCceEee
Confidence 34667888777 6787643 4443322 123667899999999999999998653
No 35
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.89 E-value=0.00066 Score=49.97 Aligned_cols=20 Identities=35% Similarity=0.878 Sum_probs=13.7
Q ss_pred ccccccccccccchhhhhcc
Q psy3876 64 KVEISLTDCLACSGCITSAE 83 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp 83 (477)
...++..+|+.||.|+.+||
T Consensus 33 ~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 33 KVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp SEEE-TTT--TTSHHHHH-T
T ss_pred CeEeCcccccccChhhhhCc
Confidence 34578899999999999998
No 36
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.87 E-value=0.00071 Score=63.46 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccChHHHHH
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQSHEEVMK 97 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~~~ 97 (477)
+.+.|+.|. ++|+..+ |.+..+... + .....++..+|+.||.|+.+||++||......+...
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~A------i~~~~~~~~-----~----~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~~~ 100 (181)
T PRK08222 36 MPSQCIACGACTCACPANA------LTIQTDDQQ-----N----SRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTV 100 (181)
T ss_pred ChhhCcchhHHHHhCCccc------eEccccccc-----C----ccceeeccCcCcCCCCcccccCcCeEEeccceeeec
Confidence 456777666 7888754 555432110 0 011246678999999999999999998754111100
Q ss_pred HHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCc
Q psy3876 98 VIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVD 153 (477)
Q Consensus 98 ~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~ 153 (477)
.... +....+.+.+..+..=+..|. .......+.+.|...||.
T Consensus 101 -~~~~----------~l~~~~~~~~~~C~~Cg~~f~--~~k~i~~~~~~l~~~~~~ 143 (181)
T PRK08222 101 -TNKA----------DLYTRATFHLQRCSRCERPFA--PQKTVALAAELLAQQQNA 143 (181)
T ss_pred -cchh----------hhheecccccCcCcccCCccC--cHhHHHHHHHHhhhccCc
Confidence 0000 011113334444555566665 233456666666665554
No 37
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=96.85 E-value=0.00066 Score=67.29 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=40.2
Q ss_pred CCCCCCc-CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccc
Q psy3876 13 TDLDDFI-GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 13 ~~ldD~i-~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+-+++|+ ....+|+.|+ +.||..| |... .-++|+.+.|++||+|.++||++|+.
T Consensus 182 qH~~~~p~v~e~kc~~c~~cv~~cp~~A------i~~~----------------~~~~I~~~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 182 QHLDEKPVVVEEKCYDCGLCVKICPVGA------ITLT----------------KVVKIDYEKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred cccccCceeeeecccccchhhhhCCCcc------eecc----------------cceeechhhccchhhhhhhccCcccc
Confidence 3457775 3556777666 7899875 4322 12468999999999999999999986
Q ss_pred c
Q psy3876 89 Q 89 (477)
Q Consensus 89 ~ 89 (477)
+
T Consensus 240 ~ 240 (354)
T COG2768 240 Q 240 (354)
T ss_pred c
Confidence 4
No 38
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=96.80 E-value=0.00098 Score=61.44 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=23.0
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++...|+.||.|+.+||++||...+
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAIVETP 118 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcceecC
Confidence 47888999999999999999987654
No 39
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=96.76 E-value=0.00067 Score=60.46 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
+...|+.|. ++|+..+ |...+. +...|+.++|+.||.|+.+||++|+
T Consensus 57 d~~~Ci~C~~C~~~CP~~a------i~~~~~--------------~~~~i~~~~C~~Cg~Cv~vCP~~a~ 106 (133)
T PRK09625 57 NNEICINCFNCWVYCPDAA------ILSRDK--------------KLKGVDYSHCKGCGVCVEVCPTNPK 106 (133)
T ss_pred ehhHCcChhhHHHhCCHhh------eEecCC--------------ceEEeCcCcCcChhHHHHHCCcCce
Confidence 457777776 6787643 332211 1123667889999999999999985
No 40
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.73 E-value=0.00057 Score=37.52 Aligned_cols=15 Identities=20% Similarity=0.747 Sum_probs=14.0
Q ss_pred ccccchhhhhccccc
Q psy3876 72 CLACSGCITSAESVL 86 (477)
Q Consensus 72 Ci~Cg~Cv~~Cp~~a 86 (477)
|+.||.|+.+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999986
No 41
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=96.72 E-value=0.001 Score=57.99 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=22.4
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++..+|+.||.|+.+||++|+....
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccc
Confidence 46788999999999999999986543
No 42
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.63 E-value=0.001 Score=54.37 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=39.2
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.+..+||+|. ..||+.+ |...++|.. +-|+-+.|-+||-|+.+||+.||...
T Consensus 31 v~d~~kCi~C~~C~~yCPe~~------i~~~~~~~~-------------~~idYdyCKGCGICa~vCP~kaI~Mv 86 (91)
T COG1144 31 VVDEDKCINCKLCWLYCPEPA------ILEEEGGYK-------------VRIDYDYCKGCGICANVCPVKAIEMV 86 (91)
T ss_pred EEcccccccCceeEEECCchh------eeeccCCcc-------------ceeEcccccCceechhhCChhheEeE
Confidence 44558888877 7899975 555443322 11788899999999999999998753
No 43
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.57 E-value=0.00089 Score=40.41 Aligned_cols=19 Identities=26% Similarity=0.742 Sum_probs=17.2
Q ss_pred ccccccccccchhhhhccc
Q psy3876 66 EISLTDCLACSGCITSAES 84 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
.|+.++|++|+.|+.+||.
T Consensus 4 ~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACPV 22 (22)
T ss_pred EEccccccCchhHHHhhCc
Confidence 4889999999999999984
No 44
>PRK08764 ferredoxin; Provisional
Probab=96.57 E-value=0.0015 Score=58.40 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=20.9
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.++|+.||+|+.+||++||..
T Consensus 111 ~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 111 TVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred eecCCcCcCccchhhhcCccceEe
Confidence 366789999999999999999864
No 45
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.55 E-value=0.0013 Score=61.78 Aligned_cols=28 Identities=14% Similarity=0.484 Sum_probs=24.0
Q ss_pred ccccccccccccchhhhhcccccccccC
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
...++...|+.||.|+.+||++||....
T Consensus 96 ~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 96 NYSIDFGVCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred eeecCcccccCcCchhhhcCCCCeeccc
Confidence 3458889999999999999999987644
No 46
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.54 E-value=0.0018 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.573 Sum_probs=20.9
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++.++|+.||.|+.+||++||..+
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 42 PRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred CCCCcCcChhHHHHhcCcccCEEE
Confidence 456799999999999999998764
No 47
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.53 E-value=0.0012 Score=67.34 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=36.4
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+...|+.|. ++|+..+ .++|.+.+ +++.++.+.|+.||.|+.+||++|+...
T Consensus 167 d~~~C~~Cg~C~~~Cp~~a---~~ai~~~~---------------~~~~id~~~C~~Cg~Cv~~CP~~Al~~~ 221 (314)
T TIGR02912 167 DADRCIGCGACVKVCKKKA---VGALSFEN---------------YKVVRDHSKCIGCGECVLKCPTGAWTRS 221 (314)
T ss_pred eCccCCcchHHHHhcChhh---cCceeccC---------------CeEEeCCCcCcCcchhhhhCCHhhcccC
Confidence 446677665 7898743 22344321 2345788999999999999999998654
No 48
>PRK06991 ferredoxin; Provisional
Probab=96.49 E-value=0.0013 Score=65.35 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=36.5
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.+.||.|. ++|+..+ |.+..++ ...++..+|+.||.|+.+||+++|....
T Consensus 83 d~~~CigCg~Cv~aCP~~A------I~~~~~~--------------~~~v~~~~CigCg~Cv~vCP~~AI~~~~ 136 (270)
T PRK06991 83 DEQLCIGCTLCMQACPVDA------IVGAPKQ--------------MHTVLADLCTGCDLCVPPCPVDCIDMVP 136 (270)
T ss_pred ccccCCCCcHHHHhCCHhh------eeccccc--------------ceeeCHhhCCCchHHHhhCCcCCeEeec
Confidence 557788776 6888653 4333221 1246778999999999999999987654
No 49
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.47 E-value=0.0019 Score=50.43 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=35.8
Q ss_pred CCccccc---cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIK---PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~---c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++|+. |+.+|+... +....+- ....+.++.+.|+.||.|+..||++||...
T Consensus 6 d~~~C~~c~~C~~~CP~~~------~~~~~~~-----------~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~ 61 (68)
T COG1146 6 DYDKCIGCGICVEVCPAGV------FDLGEDE-----------GGKPVVARPEECIDCGLCELACPVGAIKVD 61 (68)
T ss_pred CchhcCCCChheeccChhh------EEecccc-----------CcceeEeccccCccchhhhhhCCcceEEEe
Confidence 3345555 668898753 4443321 012245788899999999999999998764
No 50
>CHL00065 psaC photosystem I subunit VII
Probab=96.46 E-value=0.0015 Score=52.83 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=21.4
Q ss_pred cccccccccchhhhhcccccccccC
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
++.+.|+.||.|+.+||++||....
T Consensus 43 ~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 43 PRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred CCCCcCCChhhhhhhcCccccEEEE
Confidence 4567899999999999999987643
No 51
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.42 E-value=0.0017 Score=55.38 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.7
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.|+.++|..||.|+.+||++||...+
T Consensus 77 ~id~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09623 77 AIDYDYCKGCGICANECPTKAITMVK 102 (105)
T ss_pred EeCchhCcCcchhhhhcCcCcEEecc
Confidence 47888999999999999999987643
No 52
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.41 E-value=0.002 Score=63.80 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.3
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++..+|+.||.|+.+||++|+..
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~~Ai~f 253 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHEDVLGF 253 (255)
T ss_pred EeccccccchhHHHHhCCcccccc
Confidence 477789999999999999999864
No 53
>PRK06273 ferredoxin; Provisional
Probab=96.41 E-value=0.0016 Score=60.10 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=37.4
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+...|+.|. .+||..+ |.+...+.. ....+.. +.....|+..+|+.||.|+.+||++||..
T Consensus 47 d~~~CigCg~C~~aCP~~A------I~~~~~ep~-~~~~~~~-~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKA------IEMIPVEPV-KITEGYV-KTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CchhCcChhHHHHhcCccc------eeeeccccc-chhcccc-cccceecccccCcCCCCcchhCCHhheec
Confidence 445666665 7888754 555433221 1110000 01224588899999999999999999854
No 54
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.40 E-value=0.0017 Score=57.81 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=25.2
Q ss_pred ccccccccccchhhhhcccccccccChHHH
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQSHEEV 95 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~ 95 (477)
.|+...|+.||.|+.+||++||......++
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~~ 70 (132)
T TIGR02060 41 NIEPDMCWECYSCVKACPQGAIDVRGYADF 70 (132)
T ss_pred ecCchhCccHHHHHHhCCcCceEEECcccc
Confidence 377889999999999999999988764443
No 55
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.36 E-value=0.0026 Score=53.89 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=21.6
Q ss_pred ccccccccccchhhhhccccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.++..+|+.||.|+.+||++||...
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred EecCccCcCccChhhHCCccccCcC
Confidence 4677899999999999999998653
No 56
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.35 E-value=0.0026 Score=51.35 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=21.4
Q ss_pred cccccccccchhhhhcccccccccC
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
++.++|+.||.|+.+||++||..+.
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai~~~~ 67 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred CCCCcCcChhhHHhhcCCccceEee
Confidence 4567899999999999999997654
No 57
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.34 E-value=0.0022 Score=60.05 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.++|+.|. ++|+..+ |.+..++... .....++..+|+.||.|+.+||++||....
T Consensus 36 d~~~C~~C~~Cv~~CP~~a------i~~~~~~~~~---------~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 36 NPQQCIGCAACVNACPSNA------LTVETDLATG---------ELAWEFNLGRCIFCGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred ChhhCcChhHHHHhcCccC------eEeeccccCC---------cccceeccccCcCccchhhhcCcCceEccC
Confidence 456777766 7888754 5554322100 011247788999999999999999997654
No 58
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.26 E-value=0.0019 Score=54.43 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=31.2
Q ss_pred cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 28 PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 28 c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
|+++|+..| |..... .|.+.|+.+.|++||.|+.+||.++|....
T Consensus 17 C~~~CP~~A------i~~~~~-------------~G~V~id~~~CigC~~C~~aCP~~ai~~~~ 61 (98)
T PF13247_consen 17 CVEACPTGA------IYKDPE-------------DGIVVIDEDKCIGCGYCVEACPYGAIRFDP 61 (98)
T ss_dssp HHHHCTTTS------EEEETT-------------TS-EEE-TTTCCTHHHHHHH-TTS-EEEET
T ss_pred hhhhCCccc------eEEEcC-------------CCeEEechhhccCchhhhhhhccCcceeec
Confidence 448899875 654431 145678999999999999999999997654
No 59
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.25 E-value=0.0013 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=15.7
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
|.|+.++||+||.|+.+||.+++..
T Consensus 1 A~Id~~~Ci~Cg~C~~~Cp~~~~~~ 25 (59)
T PF14697_consen 1 AVIDEDKCIGCGKCVRACPDGAIDA 25 (59)
T ss_dssp EEE-TTT----SCCCHHCCCCS-S-
T ss_pred CEECcccccChhhHHhHcCccceee
Confidence 5689999999999999999876543
No 60
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.19 E-value=0.0021 Score=53.19 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=37.9
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.++||.|+ .+|+..+ |.+..++.. .....++.+.|+.||.|+.+||++|+...
T Consensus 26 ~~~~~Ci~Cg~C~~~CP~~a------i~~~~~~~~----------~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~ 83 (99)
T COG1145 26 IDAEKCIGCGLCVKVCPTGA------IELIEEGLL----------LPEVVIDPDLCVLCGACLKVCPVDALSIA 83 (99)
T ss_pred eCccccCCCCCchhhCCHHH------hhcccccCc----------cceEEEccccCccccchHhhCCcCCeehh
Confidence 3456677666 7899864 444222100 13456888999999999999999997653
No 61
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.10 E-value=0.0045 Score=52.53 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=22.6
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++.++|+.||.|+.+||++||....
T Consensus 49 ~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 49 VVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred EeCCccCCCcCcchhhCChhhEEEec
Confidence 46778999999999999999998654
No 62
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.07 E-value=0.0031 Score=66.22 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.5
Q ss_pred ccccccccccccchhhhhccccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.|+.++|++|+.|+.+||.+|+...
T Consensus 208 iV~ID~dkCiGCg~CV~ACPygAI~~n 234 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPYKKIYFN 234 (492)
T ss_pred eEEEehhhccChHHHHHhCCCCCcEec
Confidence 346888999999999999999998754
No 63
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.03 E-value=0.0046 Score=57.23 Aligned_cols=27 Identities=15% Similarity=0.492 Sum_probs=23.3
Q ss_pred cccccccccccchhhhhcccccccccC
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..++..+|+.||.|+.+||++||...+
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCC
Confidence 457888999999999999999987654
No 64
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.02 E-value=0.0048 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=20.3
Q ss_pred cccccccccchhhhhcccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
++...|+.||.|+.+||++||..
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~ai~~ 65 (81)
T PRK02651 43 PRTEDCVGCKRCETACPTDFLSI 65 (81)
T ss_pred CCCCcCCChhhhhhhcCCCceEE
Confidence 46678999999999999999875
No 65
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=96.00 E-value=0.0033 Score=64.74 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=34.0
Q ss_pred ccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccc
Q psy3876 25 CIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 25 CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
|-.|+..||..+ |.+..++ ..+++.|+.++|+.||.|+.+||++|+.
T Consensus 186 ~~~Cv~~CP~~A------i~~~~~~-----------~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 186 IPSVVAACPTGA------LKPRRDG-----------KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred CCceEeeCchhh------ceecccC-----------CCCceeeccccCCcCCchHHhCchhhcc
Confidence 345677888865 5553221 1144679999999999999999999975
No 66
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=95.91 E-value=0.0046 Score=61.71 Aligned_cols=25 Identities=20% Similarity=0.578 Sum_probs=22.0
Q ss_pred cccccccccchhhhhcccccccccC
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
++..+|+.||.|+.+||++|+....
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 263 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSEDVFNFTI 263 (271)
T ss_pred eCcccCcChhHHHhhcCccceeecc
Confidence 6778999999999999999997643
No 67
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=95.84 E-value=0.0056 Score=58.15 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.3
Q ss_pred cccccccccccccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
|-+.++.+.||+||-|+.+||.+|....
T Consensus 93 GiV~vd~d~CIGC~yCi~ACPyga~~~~ 120 (203)
T COG0437 93 GIVLVDKDLCIGCGYCIAACPYGAPQFN 120 (203)
T ss_pred CEEEecCCcccCchHHHhhCCCCCceeC
Confidence 5567899999999999999999997653
No 68
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.79 E-value=0.0037 Score=35.45 Aligned_cols=16 Identities=19% Similarity=0.839 Sum_probs=13.9
Q ss_pred ccccccchhhhhcccc
Q psy3876 70 TDCLACSGCITSAESV 85 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ 85 (477)
+.|++|+.|+.+||+.
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 5799999999999973
No 69
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.78 E-value=0.0051 Score=62.05 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=23.1
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+.|+.++|++|+.|+.+||.+|+..
T Consensus 155 GiV~ID~ekCiGCg~Cv~ACPygAi~~ 181 (321)
T TIGR03478 155 GIVLVDQERCKGYRYCVEACPYKKVYF 181 (321)
T ss_pred CeEEECHHHCcchHHHHHhCCCCCcEe
Confidence 345688899999999999999999764
No 70
>PRK10194 ferredoxin-type protein; Provisional
Probab=95.72 E-value=0.0051 Score=56.61 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.9
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.|+.+.|++||.|+.+||++||...
T Consensus 133 ~~i~~~~C~gCg~C~~~CP~~AI~~~ 158 (163)
T PRK10194 133 PQLNSQLCNGCGACAASCPVSAITAE 158 (163)
T ss_pred ceeCcccCcCcchhhhhCCccceEec
Confidence 35788999999999999999999764
No 71
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.65 E-value=0.0053 Score=67.53 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.4
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.|+.++|+.||.|+.+||++||..
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~~Ai~~ 560 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPCGAIEM 560 (564)
T ss_pred EEEecccCcChhHHHhhcCcCceEe
Confidence 4578899999999999999999875
No 72
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.57 E-value=0.0087 Score=63.45 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccc-ccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAES-VLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~-~ai~~~s 91 (477)
+..+|+.|. +.|+..+ ...|.+..+|. ....|+.+.|+.||.|+.+||+ +||....
T Consensus 340 ~~~~C~~C~~C~~~Cp~~~---~~ai~~~~~~~------------~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 340 DQDKCIGCGRCYIACEDTS---HQAIEWDEDGT------------RTPEVIEEECVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred CHHHCCCCCcccccCCCcc---hhheeeccCCC------------ceEEechhhCcccchHHhhCCCCCCEEEec
Confidence 445666665 7787531 12355433221 1234788899999999999999 9987654
No 73
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=95.45 E-value=0.0072 Score=63.94 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.3
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++...|..|+.|+.+||++||..
T Consensus 35 ~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 35 VVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred EeCcccCcCHHHHHhhcCccccee
Confidence 467789999999999999999873
No 74
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=95.42 E-value=0.0055 Score=51.18 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.4
Q ss_pred ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccc
Q psy3876 27 KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
.|+.+||..+ +...++ +.+.++.+.|+.||.|+.+||..++
T Consensus 38 ~C~~aCPagA------~~~~e~--------------G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 38 LLVKACPAGL------YKKQDD--------------GSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred HHHHHCCHhh------cEeCCC--------------CCEEEcCCCCCcchhhhhhcCCCCc
Confidence 5668899865 543322 4567899999999999999998875
No 75
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=95.30 E-value=0.0089 Score=58.37 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.2
Q ss_pred ccccccccccchhhhhccccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.++...|..||.|+..||++|+...
T Consensus 173 ~i~~~~C~~Cg~C~~~CP~~AI~~~ 197 (234)
T TIGR02700 173 FIRLLKCVGCGKCKEACPYNAIHGG 197 (234)
T ss_pred EEchhhCCccchHHhhCCCCceecC
Confidence 4778899999999999999998755
No 76
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.26 E-value=0.0068 Score=60.85 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=31.2
Q ss_pred cccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccc
Q psy3876 24 ECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 24 ~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
-|-+|+.+|+..| |.... .++.++.+.|+.||.|+.+|| .+.
T Consensus 176 gc~~cv~~C~~gA------I~~~~---------------~~l~id~~~Ci~Cg~Ci~~Cp-~~~ 217 (317)
T COG2221 176 GCGKCVKVCPTGA------ITWDG---------------KKLKIDGSKCIGCGKCIRACP-KAA 217 (317)
T ss_pred hhHhHHHhCCCCc------eeecc---------------ceEEEehhhccCccHHhhhCC-hhh
Confidence 3445557888875 65553 345689999999999999999 443
No 77
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.23 E-value=0.0088 Score=60.85 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=21.4
Q ss_pred ccccccccccchhhhhccccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.++..+|..||.|+.+||++||...
T Consensus 285 ~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 285 DFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred cCCcccCcCcCchhhhCCHhheEec
Confidence 3566889999999999999998753
No 78
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.21 E-value=0.0093 Score=57.43 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=37.6
Q ss_pred CCCCcCCCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc--hhhhhcccccccc
Q psy3876 15 LDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS--GCITSAESVLITQ 89 (477)
Q Consensus 15 ldD~i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg--~Cv~~Cp~~ai~~ 89 (477)
-.||+.....|-.|+++|+..+ |.+...+....++... ...+...|..|+ .|+.+||++||..
T Consensus 48 e~~F~~~Ci~Cg~Cv~aCP~~a------i~~~~~~~~~~~g~p~------~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 48 EQDFLAACVRCGLCVEACPYDI------LSLASWSDPAPLGTPF------FTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred chhhcccccchhHHHHhCCccc------ccccccccccccCCcc------ccccCCcCCCCCCchHHhHcCHhhhch
Confidence 3477655555556668999864 4443322211111111 113456799999 6999999999863
No 79
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.20 E-value=0.012 Score=57.13 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 21 PSQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 21 ~~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
....|+.|. .+||..+ |....+ .+.+.++.+.|++||.|+.+||++|+..
T Consensus 90 ~~~~C~~C~~~~Cv~~CP~gA------i~~~~~-------------~g~v~id~~~C~~C~~C~~aCP~~A~~~ 144 (225)
T TIGR03149 90 FRKSCQHCDNAPCVAVCPTGA------SFKDEE-------------TGIVDVHKDLCVGCQYCIAACPYRVRFI 144 (225)
T ss_pred CchhccCCcCcChHhhCCCCc------EEEeCC-------------CCeEEechhhCCcchHHHHhCCCCCcEe
Confidence 456677654 7788754 544321 1234578889999999999999999753
No 80
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=95.15 E-value=0.0077 Score=55.94 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=24.1
Q ss_pred ccccccccccccchhhhhcccccccccC
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
...++.++||+|+.|..+||++||....
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEEE
Confidence 3457778899999999999999998765
No 81
>PRK07118 ferredoxin; Validated
Probab=95.12 E-value=0.0088 Score=59.98 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=36.6
Q ss_pred cccccc---ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 23 QECIKP---IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 23 ~~CI~c---~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..|+.| +++||..+ |.+.+ +.+.|+.++|+.||.|+.+||++||....
T Consensus 213 ~~Ci~Cg~Cv~~CP~~A------I~~~~---------------~~~vId~~~C~~Cg~C~~~CP~~AI~~~~ 263 (280)
T PRK07118 213 VGCIGCGKCVKACPAGA------ITMEN---------------NLAVIDQEKCTSCGKCVEKCPTKAIRILN 263 (280)
T ss_pred cccccchHHHhhCCcCc------EEEeC---------------CcEEEcCCcCCCHHHHHHhCCccccEeec
Confidence 445555 48899865 76653 23468899999999999999999997654
No 82
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.12 E-value=0.011 Score=58.36 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=36.6
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+..+|+.|+ ++|+-.| |.+... ++-.++.+.|-+||.|.-+||..||....
T Consensus 67 ~~e~C~~CG~C~~vC~f~A------i~~~~~--------------~~~~~~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 67 DPEKCIRCGKCAEVCRFGA------IVVLPG--------------GKPVLNPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred ChhhccccCcHHHhCCCCe------EEEcCC--------------CceecCcccccCcccceeeCCCccccccc
Confidence 345577777 7888765 544322 22247788999999999999999998643
No 83
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.99 E-value=0.0082 Score=55.23 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=34.0
Q ss_pred ccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 23 QECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 23 ~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
..|+.|. ++|+..+ |...+.|. ..+.++.+.|+.|+.|+.+||++|+...
T Consensus 34 ~~C~~Cg~C~~aCp~~~------i~~~~~~~------------~~~~~~~~~C~~C~~C~~~CP~~ai~~~ 86 (163)
T PRK10194 34 THCTRCDACINACENNI------LQRGAGGY------------PSVNFKNNECSFCYACAQACPESLFSPR 86 (163)
T ss_pred hhCcChhHHHHHcChhh------cccCCCCc------------eeeeecCCCCCCchhhHhhCcchheecc
Confidence 4677666 7888753 43332221 1123667889999999999999998653
No 84
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.85 E-value=0.01 Score=43.53 Aligned_cols=21 Identities=24% Similarity=0.748 Sum_probs=8.7
Q ss_pred ccccccccccccchhhhhccc
Q psy3876 64 KVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
|+.|+.+.|++||.|+.+||+
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 356889999999999999999
No 85
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.85 E-value=0.015 Score=69.04 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=23.5
Q ss_pred cccccccccccchhhhhcccc--cccccC
Q psy3876 65 VEISLTDCLACSGCITSAESV--LITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~--ai~~~s 91 (477)
..++.++|+.||.|+.+||++ ||....
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~~~Al~m~~ 762 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAKEKALVMQP 762 (1165)
T ss_pred EEeccccCcCccchhhhcCCCCccccccc
Confidence 468899999999999999995 887665
No 86
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=94.75 E-value=0.021 Score=55.03 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=35.9
Q ss_pred cccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccc--ccccc
Q psy3876 24 ECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESV--LITQQ 90 (477)
Q Consensus 24 ~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~--ai~~~ 90 (477)
.|-.|.++|+... .+|.+....... ....+..|+.+.|+.||.|+.+||+. ||...
T Consensus 140 ~C~~C~~~CP~~~----~AI~~~~~~~~~-------~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~ 197 (213)
T TIGR00397 140 NCSICVRVCPIRG----EAISLKPIENER-------GRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVL 197 (213)
T ss_pred CcccchhhCCCCc----ceEEEecccccC-------CcccceEEecccCCCcchhhHhCCCCCCeEEEe
Confidence 5667779999731 236554321110 00123468899999999999999976 66554
No 87
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=94.72 E-value=0.018 Score=56.58 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=22.3
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++.+.|++|+.|+.+||++|+...
T Consensus 125 v~id~~~CigC~~Cv~aCP~~Ai~~~ 150 (244)
T PRK14993 125 VVVDNKRCVGCAYCVQACPYDARFIN 150 (244)
T ss_pred EEEcHHHCCCHHHHHHhcCCCCCEEe
Confidence 45788899999999999999998754
No 88
>PRK09898 hypothetical protein; Provisional
Probab=94.63 E-value=0.024 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=13.3
Q ss_pred ccccccccccchhhhhccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
.++.++|+.|+.|+.+||.+|+.
T Consensus 150 ~vd~~~CigC~~C~~aCP~~ai~ 172 (208)
T PRK09898 150 TVDHKRCIGCSACTTACPWMMAT 172 (208)
T ss_pred EeccccCCCcCcccccCCCCCCE
Confidence 34555566666666666666554
No 89
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=94.51 E-value=0.015 Score=49.26 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.5
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.|+.+.|++||.|+.+||++++..
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~ 35 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAM 35 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhcc
Confidence 556788999999999999999998754
No 90
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.50 E-value=0.021 Score=62.06 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCCCCcCCCccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccc
Q psy3876 14 DLDDFIGPSQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 14 ~ldD~i~~~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
...+|..+..+|-.|. ..|+. |.+.. . .+|+.|+...|+.||.|+.+||+.|+.
T Consensus 568 ~~~~~~Vd~~~CtGC~~C~~~~~Cps--------i~~~~------------~-~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 568 KAPKYFVDEEKCTGCGDCIVLSGCPS--------IEPDP------------T-FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred cCCCceechhhcCCcHHHHhhcCCce--------EeecC------------C-CCceeecccccccchhhhhcCchhhee
Confidence 3455777888888887 35665 33332 1 256789999999999999999999987
Q ss_pred ccC
Q psy3876 89 QQS 91 (477)
Q Consensus 89 ~~s 91 (477)
...
T Consensus 627 ~~~ 629 (640)
T COG4231 627 EGG 629 (640)
T ss_pred ccc
Confidence 755
No 91
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.33 E-value=0.026 Score=56.69 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.3
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+.++.+.|++|+.|+.+||.+|+..
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~a~~~ 143 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFNIPRY 143 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCCCcEE
Confidence 345688899999999999999999865
No 92
>PRK07118 ferredoxin; Validated
Probab=94.30 E-value=0.027 Score=56.48 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCccccc-ccccccccccccccchhhhhcccccccccC
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEK-LKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~-~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.+..+|+.|. ..|+..+ |.+..++....+......+ .....+....|+.|+.|+.+||++||....
T Consensus 165 id~~~C~~Cg~Cv~aCP~~a------i~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 165 VDEDKCTGCGACVKACPRNV------IELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred EChhhCcChhHHHHhcCccc------eeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 3556777666 6788643 5555544443332111110 001124467899999999999999987643
No 93
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.29 E-value=0.018 Score=56.92 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=36.9
Q ss_pred CCCcCCCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc--hhhhhccccccccc
Q psy3876 16 DDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS--GCITSAESVLITQQ 90 (477)
Q Consensus 16 dD~i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg--~Cv~~Cp~~ai~~~ 90 (477)
.||+.-+..|-.|+++|+..+ |.+...+.....+... .......|..|+ .|+.+||++||...
T Consensus 55 ~~F~~~Ci~Cg~Cv~aCP~~a------I~~~~~~~~~~~g~p~------~~~~~~~C~~C~~~~Cv~aCPtgAL~~~ 119 (254)
T PRK09476 55 NDFLSACIRCGLCVQACPYDT------LKLATLASGLSAGTPY------FVARDIPCEMCEDIPCVKACPSGALDRE 119 (254)
T ss_pred hhhhhhCcCchHHHHhCCccc------cCccccccccccCCce------eeecCCcCcCCCCCchhhccCccceEee
Confidence 467655555666668998754 4433221111111111 012335799999 49999999999754
No 94
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.25 E-value=0.016 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=21.8
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+..+.|+.||.|+.+||++||..
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhc
Confidence 577888999999999999999876
No 95
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=94.23 E-value=0.019 Score=50.01 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=23.8
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+.++.++|++||.|+.+||.+|+..
T Consensus 35 g~i~i~~~~Ci~C~~C~~~CP~~ai~~ 61 (120)
T PRK08348 35 GKILYDVDKCVGCRMCVTVCPAGVFVY 61 (120)
T ss_pred ceEEECcccCcCcccHHHHCCccceEc
Confidence 566789999999999999999999754
No 96
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.19 E-value=0.02 Score=66.68 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.4
Q ss_pred cccccchhhhhcccccccccC
Q psy3876 71 DCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.|+.||.|+.+||++|+...+
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 399999999999999998877
No 97
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.08 E-value=0.027 Score=55.69 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.4
Q ss_pred cccccccccccchhhhhcccc--cccc
Q psy3876 65 VEISLTDCLACSGCITSAESV--LITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~--ai~~ 89 (477)
..|+.+.|++||.|+.+||+. ||..
T Consensus 179 p~Id~d~C~gCG~C~~aCP~~~~AI~v 205 (254)
T PRK09476 179 PTVHSDACTGCGKCEKACVLEKAAIKV 205 (254)
T ss_pred eEEeHHHCcCcChhhHhcCCCcceEEE
Confidence 358889999999999999998 7654
No 98
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.98 E-value=0.019 Score=47.23 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=23.4
Q ss_pred ccccccccccccchhhhhccccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.|+.+.|++||.|+.+||.++|...
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eEEECHhHCCCcchHHHHcChhhceee
Confidence 456899999999999999999998654
No 99
>PRK13795 hypothetical protein; Provisional
Probab=93.92 E-value=0.026 Score=63.05 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=35.8
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.....|+.|. ..|+..+ |.+.+.. ..+.++.++|+.||.|+.+||+.++..
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~a------i~~~~~~-------------~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGA------IRIEEGK-------------RKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEccccCCCHhHHHHhCCccc------EEeecCC-------------ceEEechhhcCChhHHHhhcCCCeeEe
Confidence 33456666665 6788653 5554321 123477789999999999999999765
No 100
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.82 E-value=0.026 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.629 Sum_probs=18.2
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.-...+|++||.|+++||++.
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred hcCCccCCCcChHhhhcCCCC
Confidence 357789999999999999974
No 101
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=93.64 E-value=0.076 Score=49.61 Aligned_cols=31 Identities=10% Similarity=0.377 Sum_probs=24.6
Q ss_pred ccccccccccc------hhhhhcccccccccChHHHH
Q psy3876 66 EISLTDCLACS------GCITSAESVLITQQSHEEVM 96 (477)
Q Consensus 66 ~I~~~~Ci~Cg------~Cv~~Cp~~ai~~~s~~~~~ 96 (477)
.+....|..|| .|+.+||++||...+..++.
T Consensus 125 ~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~~ 161 (181)
T PRK10330 125 KAEANKCDLCNHREDGPACMAACPTHALICVDRNKLE 161 (181)
T ss_pred CceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHHH
Confidence 35567899999 89999999999877644443
No 102
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.44 E-value=0.041 Score=63.98 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=20.9
Q ss_pred cccccccccccchhhhhcccccccccC
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.| .+.|+.||.|+.+||+.+--.++
T Consensus 922 ~~~-~~~C~~CG~C~~~CP~~~~py~d 947 (1019)
T PRK09853 922 VHL-DAMCNECGNCAQFCPWNGKPYKD 947 (1019)
T ss_pred EEc-CccCccccchhhhCCCCCCcccc
Confidence 345 48999999999999998865544
No 103
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.42 E-value=0.033 Score=55.22 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+..|-.|.+.|+..+ +.+.+. ....++...|..|+.|+.+||++|+...
T Consensus 170 ~C~~C~~C~~~CP~~v------i~~d~~--------------~~~v~~~~~C~~C~~C~~~Cp~~AI~~~ 219 (259)
T cd07030 170 DCDGCGKCVEECPRGV------LELEEG--------------KVVVEDLEDCSLCKLCERACDAGAIRVG 219 (259)
T ss_pred hCCChHHHHHhCCccc------eEccCC--------------eeEEeChhhCcCchHHHHhCCCCcEEEE
Confidence 3445677778999864 554321 1112456789999999999999998754
No 104
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=93.38 E-value=0.035 Score=51.90 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=22.7
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++.++|++||.|+.+||.+||...
T Consensus 82 v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 82 VHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred EEeChhhCCCcchhhhhCCccCeEee
Confidence 45788899999999999999998754
No 105
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=93.36 E-value=0.028 Score=59.81 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=16.3
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|..||.|..+||++.
T Consensus 342 ~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 342 PYLSSLCGACREVCPVKI 359 (432)
T ss_pred CccchhhhhhhccCCCCC
Confidence 468999999999999976
No 106
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.35 E-value=0.065 Score=56.90 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=39.4
Q ss_pred CCCCc--CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 15 LDDFI--GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 15 ldD~i--~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+++|. .+...|+-|. + |+-.+ |++. +|.++...|-.||-|..+||.+|+..
T Consensus 551 ~~~~~a~vde~~C~gC~~C~~-Cpf~a------is~~-----------------ka~v~~~~C~gCG~C~~aCp~gai~~ 606 (622)
T COG1148 551 LEPFVATVDEDKCTGCGICAE-CPFGA------ISVD-----------------KAEVNPLRCKGCGICSAACPSGAIDL 606 (622)
T ss_pred ecccccccchhhhcCCcceee-CCCCc------eecc-----------------ccccChhhhCcccchhhhCCcccchh
Confidence 45553 3667788776 4 66543 5444 25688889999999999999999988
Q ss_pred cC
Q psy3876 90 QS 91 (477)
Q Consensus 90 ~s 91 (477)
+.
T Consensus 607 ~~ 608 (622)
T COG1148 607 AG 608 (622)
T ss_pred cc
Confidence 76
No 107
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.25 E-value=0.035 Score=41.03 Aligned_cols=20 Identities=20% Similarity=0.692 Sum_probs=15.1
Q ss_pred cccccchhhhhccccccccc
Q psy3876 71 DCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+|++||.|+.+||.+++...
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~ 20 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFD 20 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEE
T ss_pred CCCCcchHHHHCCccCeEcc
Confidence 59999999999999998754
No 108
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=93.24 E-value=0.037 Score=57.65 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.8
Q ss_pred cccccccccchhhhhcccccccccC
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
++.++|+.||.|+.+||++|+....
T Consensus 327 Id~~~Ci~CGaCV~aCP~~AI~~~~ 351 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPGGAFEVNL 351 (391)
T ss_pred eChHhCcChHHHHhhCCccceEEeC
Confidence 6778999999999999999987643
No 109
>PRK09898 hypothetical protein; Provisional
Probab=93.19 E-value=0.056 Score=51.77 Aligned_cols=24 Identities=13% Similarity=0.443 Sum_probs=21.0
Q ss_pred ccccccccchhhhhcccccccccC
Q psy3876 68 SLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
...+|+.||.|+.+||++||....
T Consensus 179 ~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 179 KSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred cCCcCcChHHHHHhCCcccEEEec
Confidence 357999999999999999998654
No 110
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=93.13 E-value=0.089 Score=53.92 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=24.2
Q ss_pred ccccccccch-------------hhhhcccccccccChHHHHHH
Q psy3876 68 SLTDCLACSG-------------CITSAESVLITQQSHEEVMKV 98 (477)
Q Consensus 68 ~~~~Ci~Cg~-------------Cv~~Cp~~ai~~~s~~~~~~~ 98 (477)
...+|..|+. |+.+||++||.....+++...
T Consensus 170 ~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~ 213 (328)
T PRK10882 170 AIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAE 213 (328)
T ss_pred ceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHH
Confidence 4578999999 999999999986555554443
No 111
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.11 E-value=0.033 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.692 Sum_probs=14.5
Q ss_pred cccccchhhhhcccccccccC
Q psy3876 71 DCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+|++||.|+.+||+++|....
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~ 21 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDE 21 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEE
T ss_pred CCCCcCchHHhcCccccCccc
Confidence 599999999999999987653
No 112
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=93.05 E-value=0.12 Score=53.46 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=41.7
Q ss_pred cccccccccchhhhhcccccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHH
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGF 146 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~ 146 (477)
++...|+.||.|+.+||..++.... . +...+ .+++.-+ ...++ +.+.+...+..+
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~~~~~~--~----i~~~~-----------~~yaa~~-----~~~s~---sGG~~t~l~~~~ 104 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVDGYIED--E----LANVR-----------KFFGARS-----NIGGQ---DGGVTSAILKSL 104 (341)
T ss_pred CCcCcCcCcCchhhhCCCCcccccc--c----ccchh-----------heeeecc-----ccccc---cccHHHHHHHHH
Confidence 5778999999999999986643221 1 21111 1222212 11121 123345677788
Q ss_pred HHHcCCcEEEECccchh
Q psy3876 147 FKRLGVDLVLDVGIAHC 163 (477)
Q Consensus 147 Lk~lGf~~V~Dt~~~ad 163 (477)
|.+-|++.|+=+....+
T Consensus 105 L~~g~Vd~V~~~~~~~~ 121 (341)
T PRK09326 105 LKQGEIDCAVGITRNEK 121 (341)
T ss_pred HHcCCccEEEEeccCCC
Confidence 88888888887665433
No 113
>KOG0063|consensus
Probab=93.02 E-value=0.048 Score=57.11 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=35.5
Q ss_pred ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 27 KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
-|-+.||... +|.--|.+.. .+.|++..||+||-||.-||..||..-+
T Consensus 24 eck~~cpv~~-~gk~ci~V~~----------------~~~ise~lCigcgicvkkcpf~ai~iin 71 (592)
T KOG0063|consen 24 ECKKSCPVVR-TGKLCIEVTP----------------TAFISEELCIGCGICVKKCPFEAIQIIN 71 (592)
T ss_pred HHHhcCCccc-ccceEEEEcC----------------cchhhHhhhccccceeeccCcceEEecC
Confidence 3457888864 4544444331 2579999999999999999999997655
No 114
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=93.00 E-value=0.022 Score=44.01 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred cccccccccCCCCCCCCceEEEecCCCceeecCccccccccccccccccc------ccchhhhhcccc
Q psy3876 24 ECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCL------ACSGCITSAESV 85 (477)
Q Consensus 24 ~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci------~Cg~Cv~~Cp~~ 85 (477)
.|-+|.++||..|......-.+...+....- ........++...|. .||.|+.+||..
T Consensus 4 ~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 4 TCGKCAEACPTGAISGEDEPTWEPKGCWSYN----NPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred chhHHHHhCcHhhccCCCcCeeecCcchhcc----CccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 4667779999976222111111111111110 011123345556666 999999999963
No 115
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=92.98 E-value=0.073 Score=54.55 Aligned_cols=50 Identities=12% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 21 PSQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 21 ~~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
-...|+.|. .+|+..+ |..... .+.+.++.+.|+.|+.|+.+||.+++..
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gA------i~k~~~-------------~g~V~id~dkCigCg~Cv~aCP~gai~~ 162 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSA------LTKDPK-------------TGIVHYDKDVCTGCRYCMVACPFNVPKY 162 (328)
T ss_pred ccccCCCcCchhhHhhCCCCC------EEeccc-------------CCcccCCHHHcCcccHHHHhCCccceec
Confidence 345677776 6788754 433211 1344678899999999999999999864
No 116
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=92.88 E-value=0.039 Score=51.78 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=24.7
Q ss_pred cccccccccccccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
|+..++.+.|++||.|+.+||++||...
T Consensus 31 G~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~ 58 (181)
T PRK08222 31 GKPDLMPSQCIACGACTCACPANALTIQ 58 (181)
T ss_pred CceEeChhhCcchhHHHHhCCccceEcc
Confidence 5667899999999999999999998753
No 117
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=92.87 E-value=0.071 Score=51.77 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=24.2
Q ss_pred ccccccccc----------hhhhhcccccccccChHHHHHHH
Q psy3876 68 SLTDCLACS----------GCITSAESVLITQQSHEEVMKVI 99 (477)
Q Consensus 68 ~~~~Ci~Cg----------~Cv~~Cp~~ai~~~s~~~~~~~l 99 (477)
...+|+.|+ .|+.+||++||.....++....+
T Consensus 150 ~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~~~~~ 191 (225)
T TIGR03149 150 SADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDPNSEV 191 (225)
T ss_pred ccccCCCCCcchhhCCCCCcccccCccCCEEEecccccHHHH
Confidence 346899999 79999999999876644443333
No 118
>CHL00065 psaC photosystem I subunit VII
Probab=92.79 E-value=0.049 Score=43.94 Aligned_cols=26 Identities=12% Similarity=0.459 Sum_probs=21.6
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++.+.|++||.|+.+||++++...
T Consensus 4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~ 29 (81)
T CHL00065 4 SVKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred ccCccccCCChhHHHHHCCccchhhe
Confidence 34677899999999999999887653
No 119
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=92.77 E-value=0.045 Score=53.27 Aligned_cols=50 Identities=12% Similarity=0.353 Sum_probs=35.2
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..+.+.|+.|. ..|+..+ |.+.++ +..++.+.|+.|+.|+.+||+..+..
T Consensus 170 ~id~~~C~~C~~C~~aCP~~a------i~~~~~---------------~~~i~~~~C~~C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRA------IEMEDG---------------RPNVNRDRCIKCGACYVQCPRAFWPE 222 (228)
T ss_pred EEChhhCcChhHHHHhCCHhh------EEEeCC---------------cEEEChhhccCHHHHHHHcCCCCcch
Confidence 44567777776 6777643 555421 12467789999999999999987653
No 120
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=92.76 E-value=0.037 Score=42.72 Aligned_cols=20 Identities=20% Similarity=0.602 Sum_probs=18.3
Q ss_pred cccccchhhhhccccccccc
Q psy3876 71 DCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.|+.||.|+.+||++||...
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 49999999999999999875
No 121
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=92.75 E-value=0.061 Score=52.89 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=25.7
Q ss_pred cccccccccc---------hhhhhcccccccccChHHHHHHHH
Q psy3876 67 ISLTDCLACS---------GCITSAESVLITQQSHEEVMKVIR 100 (477)
Q Consensus 67 I~~~~Ci~Cg---------~Cv~~Cp~~ai~~~s~~~~~~~l~ 100 (477)
+..++|..|+ .|+.+||++|+.....++....+.
T Consensus 154 ~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~~~s~~~ 196 (244)
T PRK14993 154 QTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHSRIA 196 (244)
T ss_pred CCcccCcCCcchhhCCCCcccchhcccCCEEEcccccchHHHH
Confidence 4568999998 799999999998766555443333
No 122
>PLN00071 photosystem I subunit VII; Provisional
Probab=92.65 E-value=0.052 Score=43.73 Aligned_cols=24 Identities=13% Similarity=0.537 Sum_probs=21.1
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+..++|++||.|+.+||++++..
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~ 28 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEM 28 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceee
Confidence 467789999999999999998764
No 123
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=92.58 E-value=0.075 Score=48.70 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=22.2
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++.++|+.||.|+.+||.+||...
T Consensus 90 ~~i~~~~C~~C~~C~~aCP~~ai~~~ 115 (161)
T TIGR02951 90 VLVDQDKCIGCRYCVWACPYGAPQYD 115 (161)
T ss_pred EEECHHhCCCchHHHhhCCCCCcEEc
Confidence 45788899999999999999998654
No 124
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=92.10 E-value=0.16 Score=57.09 Aligned_cols=19 Identities=16% Similarity=0.623 Sum_probs=17.1
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|..||.|..+||+++
T Consensus 401 ~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 401 LFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred hHhhhhhhhHHhhhCCCCC
Confidence 3578999999999999988
No 125
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=92.05 E-value=0.062 Score=42.80 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=22.0
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..|+.++|++|+.|+.+||.+++..
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~ 44 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQE 44 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEe
Confidence 4688899999999999999998764
No 126
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.05 E-value=0.078 Score=59.33 Aligned_cols=27 Identities=15% Similarity=0.487 Sum_probs=23.2
Q ss_pred cccccccccccchhhhhcccccccccC
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.++.+.|+.|+.|+.+||++|+....
T Consensus 80 v~~d~~~C~gC~~C~~~CP~~ai~~~~ 106 (639)
T PRK12809 80 VQLDEQKCIGCKRCAIACPFGVVEMVD 106 (639)
T ss_pred eecChhhCcchhhHhhhcCCCCEEccC
Confidence 457888999999999999999987643
No 127
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=91.97 E-value=0.066 Score=50.33 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=23.0
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+.++.++|++||.|+.+||++++..
T Consensus 55 G~i~~~~~kCi~Cg~C~~aCP~~ai~~ 81 (183)
T TIGR00403 55 GRIHFEFDKCIACEVCVRVCPINLPVV 81 (183)
T ss_pred ceEEeCcccCcCcCChhhhCCCCcccc
Confidence 456688899999999999999998643
No 128
>PRK06273 ferredoxin; Provisional
Probab=91.75 E-value=0.064 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=22.4
Q ss_pred ccccccccccchhhhhccccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.++.+.|++||.|+.+||++||...
T Consensus 45 ~id~~~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred eECchhCcChhHHHHhcCccceeee
Confidence 5788999999999999999998754
No 129
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=91.74 E-value=0.076 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.9
Q ss_pred ccccccccchhhhhccccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+...|..|+.|+..||.+||...
T Consensus 197 ~~~~C~~C~~Ci~~CP~~AI~i~ 219 (263)
T PRK00783 197 DLLNCSLCKLCERACPGKAIRVS 219 (263)
T ss_pred ChhhCCCchHHHHhCCCCceEEE
Confidence 55679999999999999998754
No 130
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=91.69 E-value=0.067 Score=50.03 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=24.1
Q ss_pred cccccccccccccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++..++.+.|++||.|+.+||++||...
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~ai~~~ 58 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNALTVE 58 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccCeEee
Confidence 4557889999999999999999998653
No 131
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=91.67 E-value=0.082 Score=42.51 Aligned_cols=24 Identities=13% Similarity=0.537 Sum_probs=20.2
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
....+.|++||.|+.+||++++..
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~~i~~ 27 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTDVLEM 27 (80)
T ss_pred eecCCcCcCcchHHHHCCccceee
Confidence 345678999999999999988764
No 132
>PRK13984 putative oxidoreductase; Provisional
Probab=91.65 E-value=0.12 Score=57.21 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.2
Q ss_pred cccccccccccchhhhhcccccccccC
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..++...|..|+.|+.+||++||....
T Consensus 81 ~~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 81 PVIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred cccCcccCcCcchHHhhCCcCcEEecc
Confidence 468889999999999999999987543
No 133
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=91.47 E-value=0.078 Score=40.94 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.9
Q ss_pred ccccccccccchhhhhcccc
Q psy3876 66 EISLTDCLACSGCITSAESV 85 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ 85 (477)
.|+.++|++||.|+..||..
T Consensus 2 ~vD~~~C~gcg~C~~~aP~v 21 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPEV 21 (65)
T ss_pred EEecccCcCccHHHhhCCcc
Confidence 58889999999999999964
No 134
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=91.46 E-value=0.086 Score=56.06 Aligned_cols=17 Identities=24% Similarity=0.931 Sum_probs=15.0
Q ss_pred ccccccchhhhhcccccc
Q psy3876 70 TDCLACSGCITSAESVLI 87 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ai 87 (477)
.+|+.||.|+.+||. ++
T Consensus 255 ~~Ci~Cg~CidaCp~-a~ 271 (434)
T TIGR02745 255 LECINCGLCIDACDD-VM 271 (434)
T ss_pred hhChhhhHHHHhCCC-hH
Confidence 479999999999998 54
No 135
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=91.45 E-value=0.068 Score=41.87 Aligned_cols=23 Identities=26% Similarity=0.778 Sum_probs=19.7
Q ss_pred ccccccccccccchhhhhccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
++.++.+.||+||.|..+||..-
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred EEEechhhccccchhhhcCCcce
Confidence 35688899999999999999755
No 136
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=91.20 E-value=0.094 Score=48.49 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=21.9
Q ss_pred cccccccccccccchhhhhccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.+.++.++|++||.|+.+||++++.
T Consensus 52 g~i~~~~~~Ci~Cg~C~~aCP~~~~~ 77 (167)
T CHL00014 52 GRIHFEFDKCIACEVCVRVCPIDLPV 77 (167)
T ss_pred CeEEeccccCCCcCcHHHhCCCCCcc
Confidence 44567889999999999999998753
No 137
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=91.18 E-value=0.082 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=21.4
Q ss_pred ccccccccccccchhhhhcccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+..|+.++|+.|+.|+.+||. |+..
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~-a~~~ 290 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK-ALHP 290 (402)
T ss_pred eEEEcchhcCcCccccccCcc-cccC
Confidence 457999999999999999998 6554
No 138
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=91.14 E-value=0.026 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=19.0
Q ss_pred cccccccccchhhhhcccccccccC
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+..+.|.+|+-||..||++.|..+.
T Consensus 142 v~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 142 VIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred HHHHHhcCCCcccCCCCCCceeeee
Confidence 5566788888888888888877665
No 139
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=91.12 E-value=0.17 Score=46.28 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=21.1
Q ss_pred ccccccccc---------hhhhhcccccccccCh
Q psy3876 68 SLTDCLACS---------GCITSAESVLITQQSH 92 (477)
Q Consensus 68 ~~~~Ci~Cg---------~Cv~~Cp~~ai~~~s~ 92 (477)
...+|..|+ .|+.+||++||.....
T Consensus 120 ~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 120 VMGKCDGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred ccccCCCCHHHHHCCCCCcchhhccccceEEecH
Confidence 456899998 8999999999987653
No 140
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=91.09 E-value=0.073 Score=47.38 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+..++.+.|++||.|+.+||.++|..
T Consensus 52 ~~p~~d~~~Ci~C~~C~~~CP~~ai~~ 78 (133)
T PRK09625 52 EKPVHNNEICINCFNCWVYCPDAAILS 78 (133)
T ss_pred eeEEEehhHCcChhhHHHhCCHhheEe
Confidence 455688999999999999999998753
No 141
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=91.01 E-value=0.11 Score=57.65 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.7
Q ss_pred cccccccccccchhhhhcccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
+.++. .|+.||.|+.+||++||
T Consensus 574 ~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 574 AVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceeCC-CCcCHHHHHhhCccccC
Confidence 34666 79999999999999885
No 142
>PRK02651 photosystem I subunit VII; Provisional
Probab=90.88 E-value=0.11 Score=41.72 Aligned_cols=23 Identities=13% Similarity=0.535 Sum_probs=19.5
Q ss_pred cccccccccchhhhhcccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
...++|+.||.|+.+||++++..
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~~ 28 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLEM 28 (81)
T ss_pred cccccCCCcchHHHHCCccceec
Confidence 34689999999999999988754
No 143
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=90.80 E-value=0.11 Score=47.87 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.9
Q ss_pred ccccccchhhhhcccccccc
Q psy3876 70 TDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.|++||.|+.+||++++..
T Consensus 58 ~~Ci~C~~C~~~CP~~ai~~ 77 (164)
T PRK05888 58 ERCIACKLCAAICPADAITI 77 (164)
T ss_pred ccCCcccChHHHcCcccccc
Confidence 49999999999999998764
No 144
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=90.63 E-value=0.11 Score=52.22 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=22.6
Q ss_pred cccccccccccccchhhhhccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.+.++.+.|++||.|+.+||.+|+.
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred ceEEEccccCCCCchhhhhCcccccc
Confidence 34568889999999999999999975
No 145
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.53 E-value=0.15 Score=57.16 Aligned_cols=34 Identities=9% Similarity=0.355 Sum_probs=25.0
Q ss_pred ccccccccccc------hhhhhcccccccccChHHHHHHH
Q psy3876 66 EISLTDCLACS------GCITSAESVLITQQSHEEVMKVI 99 (477)
Q Consensus 66 ~I~~~~Ci~Cg------~Cv~~Cp~~ai~~~s~~~~~~~l 99 (477)
.+....|..|+ .|+.+||++||...+.+++....
T Consensus 115 ~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~~~~ 154 (654)
T PRK12769 115 KATAHKCDLCAGRENGPACVENCPADALQLVTEQALSGMA 154 (654)
T ss_pred eeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHHHHH
Confidence 45567888998 78899999998887755554433
No 146
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=90.52 E-value=0.053 Score=60.97 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.5
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.....|+.||.|..+||++.
T Consensus 439 ~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 439 DLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhhccchhHHhhhCCCCC
Confidence 44678999999999999986
No 147
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=90.28 E-value=0.11 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.4
Q ss_pred cccccccchhhhhcccccccc
Q psy3876 69 LTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+.|++||.|+.+||++++..
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~ 62 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRV 62 (122)
T ss_pred cCcCcCcchhhhhcCHhHeee
Confidence 388999999999999988754
No 148
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=90.19 E-value=0.08 Score=59.57 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.3
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...+.|+.||.|+.+||++.
T Consensus 434 ~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 434 QLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred cCHhhhhhhhHHhccCCCCC
Confidence 34568999999999999986
No 149
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=90.04 E-value=0.32 Score=51.31 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=49.1
Q ss_pred cccchhhh------hcccccccccC-hHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHH
Q psy3876 73 LACSGCIT------SAESVLITQQS-HEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCG 145 (477)
Q Consensus 73 i~Cg~Cv~------~Cp~~ai~~~s-~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~ 145 (477)
+.|+.|+. .|+++++...+ ...+.++++++.+...... ...-.+++|+ ++. ..+......|++
T Consensus 27 ~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~--~~~ggVtisG------GGe--pl~~~~l~eLl~ 96 (404)
T TIGR03278 27 FGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRT--GRDTKVTISG------GGD--VSCYPELEELTK 96 (404)
T ss_pred CCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhc--CCCCEEEEEC------Ccc--cccCHHHHHHHH
Confidence 77888876 67888876444 4455566665554211000 1123467777 443 122346789999
Q ss_pred HHHHcCCcEEEE-Cccc
Q psy3876 146 FFKRLGVDLVLD-VGIA 161 (477)
Q Consensus 146 ~Lk~lGf~~V~D-t~~~ 161 (477)
.+|+.|++.+++ |+..
T Consensus 97 ~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 97 GLSDLGLPIHLGYTSGK 113 (404)
T ss_pred HHHhCCCCEEEeCCCCc
Confidence 999999999998 7743
No 150
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.75 E-value=0.31 Score=54.64 Aligned_cols=27 Identities=11% Similarity=0.492 Sum_probs=23.2
Q ss_pred cccccccccccchhhhhcccccccccC
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.++.++|++|+.|+.+||++|+....
T Consensus 80 ~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 80 IQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred EEEecccccCcChhcccCCccCeeecc
Confidence 458889999999999999999987543
No 151
>PRK06991 ferredoxin; Provisional
Probab=89.63 E-value=0.14 Score=51.08 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.3
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..+.|+.+.|+.||.|+.+||+++|..
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI~~ 104 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAIVG 104 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhheec
Confidence 345688899999999999999999854
No 152
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=89.26 E-value=0.23 Score=46.20 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=33.6
Q ss_pred ccccccccccccccchhhhhcccccccccChHHHHHHHHHhh
Q psy3876 62 LKKVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENN 103 (477)
Q Consensus 62 ~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~~~~l~~~~ 103 (477)
..-|.|+++.|++|..|++.||++||.-.. +.+..+++++.
T Consensus 107 ~~va~i~e~~ciGCtkCiqaCpvdAivg~~-~~mhtv~~dlC 147 (198)
T COG2878 107 RMVALIDEANCIGCTKCIQACPVDAIVGAT-KAMHTVIADLC 147 (198)
T ss_pred ceeeEecchhccccHHHHHhCChhhhhccc-hhHHHHHHHHh
Confidence 456789999999999999999999986543 46777777775
No 153
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=89.25 E-value=0.24 Score=41.78 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=32.9
Q ss_pred ccccCCCCCCC-cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCccccccccccccccccccc--------
Q psy3876 8 GVLQLTDLDDF-IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLAC-------- 75 (477)
Q Consensus 8 ~~~~~~~ldD~-i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~C-------- 75 (477)
+++...+-+.. +.+.++||.|. ..||-.+ |.+..... ...+|..|
T Consensus 24 ~Ai~~~~~~G~V~id~~~CigC~~C~~aCP~~a------i~~~~~~~-----------------~~~KCdlC~~r~~~G~ 80 (98)
T PF13247_consen 24 GAIYKDPEDGIVVIDEDKCIGCGYCVEACPYGA------IRFDPDTG-----------------KARKCDLCIDRIEEGE 80 (98)
T ss_dssp TSEEEETTTS-EEE-TTTCCTHHHHHHH-TTS-------EEEETTTT-----------------CEEE--TTHHHHTTT-
T ss_pred cceEEEcCCCeEEechhhccCchhhhhhhccCc------ceeecccc-----------------cCCcCceehhhhhcCC
Confidence 34444444445 44778898777 7899864 66664311 22469999
Q ss_pred -chhhhhcccccccc
Q psy3876 76 -SGCITSAESVLITQ 89 (477)
Q Consensus 76 -g~Cv~~Cp~~ai~~ 89 (477)
..||.+||++||..
T Consensus 81 ~PaCv~~Cp~~Al~~ 95 (98)
T PF13247_consen 81 EPACVEACPTGALTF 95 (98)
T ss_dssp S-HHHHH-TTS-EEE
T ss_pred CChhHHhccccceEE
Confidence 57999999999875
No 154
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=89.18 E-value=0.14 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.715 Sum_probs=20.8
Q ss_pred ccccccccccchhhhhccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
.++.++|+.||.|+.+||++|+.
T Consensus 3 ~id~~kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 3 VRDMSKCIGCGRCVRACTNVQIV 25 (374)
T ss_pred EechhhCCcChHhhhhCCHhhcc
Confidence 47788999999999999999976
No 155
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=88.73 E-value=0.19 Score=38.03 Aligned_cols=20 Identities=25% Similarity=0.745 Sum_probs=12.4
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
|+.+.|++||.|+..||..-
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTE
T ss_pred CChhhCcCCChHHHhCcHhe
Confidence 45688999999999999754
No 156
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=88.57 E-value=0.15 Score=43.41 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.+.|+.|+.|+.+||.+++..
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~ 70 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYL 70 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEe
Confidence 588899999999999999988754
No 157
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=88.40 E-value=0.25 Score=50.08 Aligned_cols=26 Identities=12% Similarity=0.399 Sum_probs=21.5
Q ss_pred cccccccccc---------chhhhhcccccccccC
Q psy3876 66 EISLTDCLAC---------SGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~C---------g~Cv~~Cp~~ai~~~s 91 (477)
....++|..| ..|+.+||++|+..-.
T Consensus 185 ~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGd 219 (321)
T TIGR03478 185 SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGY 219 (321)
T ss_pred CCchhhCCCchhhhccCCCCHHHhhcCcccEEEEe
Confidence 3567899999 7999999999987543
No 158
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=88.08 E-value=0.21 Score=47.31 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.1
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..+.++.++|+.||.|+.+||++++..
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~ 133 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVG 133 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhec
Confidence 456789999999999999999888643
No 159
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=88.00 E-value=0.21 Score=46.07 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.3
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..+.++.+.|+.||.|+++||++|+..
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~ 132 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVG 132 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEe
Confidence 346789999999999999999998754
No 160
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=87.62 E-value=0.21 Score=42.46 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.3
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
..++.++|++|+.|+.+||.+++.
T Consensus 46 p~i~~~~Ci~C~~C~~~CP~~ai~ 69 (105)
T PRK09623 46 PVVDESKCVKCYICWKFCPEPAIY 69 (105)
T ss_pred EEECcccCccccchhhhCCHhheE
Confidence 458889999999999999998875
No 161
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.43 E-value=0.2 Score=56.41 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=18.4
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
+...+|+.||.|.-+||.+..
T Consensus 406 ~~~~~CieCG~C~~vCPs~Ip 426 (695)
T PRK05035 406 YNLFDCIECGACAYVCPSNIP 426 (695)
T ss_pred cChhhccccCcccccCCCCCc
Confidence 567899999999999999853
No 162
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=86.51 E-value=1.6 Score=45.20 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEC---ccchhh-------hHHHHHHHHHHHhhc--CCCCcccccChhHHHHHHHhcCCCcc
Q psy3876 138 QVVAKLCGFFKRLGVDLVLDV---GIAHCF-------SLVELENEFLDRFLS--GGGPLFTSECPGWVCYAEKSHGEFIL 205 (477)
Q Consensus 138 ~~~~~l~~~Lk~lGf~~V~Dt---~~~ad~-------~~~e~~~e~~~~~~~--~~~p~itS~CP~~V~yiEk~~p~~Li 205 (477)
.....++..|.++|++.++-- .-|..+ ...+.++..++.+.+ ....-|-+.||+-...+.+.||+++.
T Consensus 164 ~~~~~~~~ll~~~g~~v~~~~~~~ccG~~~~~~G~~~~~~~~a~~n~~~~~~~~~~~~~iv~~~~~c~~~~~~~y~~~~~ 243 (388)
T COG0247 164 EVGKAAVRLLEKLGVEVVLPGEEGCCGAPAYRSGFLERAKKLAKKNIEAFKKLIEGGDPIVTVCPACYGALKKEYPELLG 243 (388)
T ss_pred HHHHHHHHHHHHcCCeEecCCCCCcCCChhhhcCCHHHHHHHHHHHHHHHHHHhhccCCEEEeCcHHHhHHHHHHHHHHH
Confidence 456888999999998887654 222221 122222222332221 12224556789999989999988433
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hHHhhCCCCCcEEEEEEEccccch
Q psy3876 206 PYISRVKSPQQVMGSLIKTH-LAEKLGVHPSHIYHVTLMPCYDKK 249 (477)
Q Consensus 206 p~ls~v~SP~~~~g~~iK~~-~~~~~~~~~~~i~~V~I~PC~aKK 249 (477)
+.-.++.+..+....++++. +.....+.+.. +++=-||...+
T Consensus 244 ~~~~~v~~~~~~l~~~l~~~~l~~~~~~~~~~--v~yHdpC~~~r 286 (388)
T COG0247 244 ERALKVVDLVELLAELLREGKLKLLPKLKGKI--VTYHDPCHLRR 286 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccccCCCc--eEEEChhHHhh
Confidence 33567788888888888775 22111122211 67888998873
No 163
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=86.37 E-value=0.4 Score=50.23 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=34.6
Q ss_pred Cccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccc
Q psy3876 22 SQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 22 ~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
--.||+|+ .+||.-..-|.....-.--|....+-++.-.....+.=...-|..||.|..+||...
T Consensus 307 ~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred HHHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCC
Confidence 35788888 589875312332221111111111111111111233345678999999999999875
No 164
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=86.08 E-value=0.32 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.4
Q ss_pred ccccccccccc-----hhhhhcccccccc
Q psy3876 66 EISLTDCLACS-----GCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg-----~Cv~~Cp~~ai~~ 89 (477)
.|+.+.|++|| .|+.+||++++..
T Consensus 4 ~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~ 32 (132)
T TIGR02060 4 FVYPTKCDGCKAGEKTACVYICPNDLMHL 32 (132)
T ss_pred EEccccccCccCCchhcCHhhcCccceEe
Confidence 47888999999 9999999999854
No 165
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=86.04 E-value=0.39 Score=48.18 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+-.+++.+|..||.|+..||.+||+.
T Consensus 186 ~~p~v~e~kc~~c~~cv~~cp~~Ai~~ 212 (354)
T COG2768 186 EKPVVVEEKCYDCGLCVKICPVGAITL 212 (354)
T ss_pred cCceeeeecccccchhhhhCCCcceec
Confidence 344689999999999999999999874
No 166
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=85.62 E-value=0.36 Score=51.53 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=18.3
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.+...+|+.||.|..+||.+.
T Consensus 398 ~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 398 EHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred cCCCCcCCcCCCcccccCCCC
Confidence 466788999999999999975
No 167
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=85.51 E-value=0.31 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.6
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++.+.|++||.|+.+||+++|....
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~ 33 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDK 33 (341)
T ss_pred EECcccCcChHHHHHhCCHhhheccc
Confidence 47888999999999999999987643
No 168
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=85.40 E-value=0.36 Score=51.13 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.3
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
++..|+.+.|+.|+.|+.+||++++..
T Consensus 3 ~~~~id~~~Ci~C~~C~~~CP~~ai~~ 29 (411)
T TIGR03224 3 KQHLIDPEICIRCNTCEETCPIDAITH 29 (411)
T ss_pred ceeeeCcccCcCccchhhhCCcccEec
Confidence 345688999999999999999999864
No 169
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=85.26 E-value=0.38 Score=40.58 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=20.7
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+..+.|+.|+.|+.+||.+++..
T Consensus 30 ~~~~~~C~~C~~C~~~CP~~~i~~ 53 (101)
T TIGR00402 30 SLFSAVCTRCGECASACENNILQL 53 (101)
T ss_pred ccCcCcCcChhHHHHHcCccccee
Confidence 366789999999999999988764
No 170
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=85.24 E-value=0.33 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.4
Q ss_pred cccccccccccccchhhhhccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.+.|+.++|+.||.|..+|+.+||.
T Consensus 62 ~~p~i~~e~C~~CG~C~~vC~f~Ai~ 87 (284)
T COG1149 62 EIPEIDPEKCIRCGKCAEVCRFGAIV 87 (284)
T ss_pred hccccChhhccccCcHHHhCCCCeEE
Confidence 35679999999999999999999994
No 171
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=84.71 E-value=0.73 Score=46.34 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=23.2
Q ss_pred cccccccc---------hhhhhcccccccccChHHHHHH
Q psy3876 69 LTDCLACS---------GCITSAESVLITQQSHEEVMKV 98 (477)
Q Consensus 69 ~~~Ci~Cg---------~Cv~~Cp~~ai~~~s~~~~~~~ 98 (477)
..+|..|. .|+.+||++||.....+++...
T Consensus 150 ~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~ 188 (283)
T TIGR01582 150 PYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKER 188 (283)
T ss_pred hhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHH
Confidence 35899994 8999999999988765555443
No 172
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=84.71 E-value=0.37 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.9
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..++.++|+.|+.|+.+||.+++..
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~ 167 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDM 167 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEe
Confidence 4578899999999999999998764
No 173
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=84.41 E-value=0.35 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred ccccccccccccchhhhhccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+..++.++|+.|+.|+.+||..++.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAII 265 (312)
T ss_pred ceEECcccCcCcccccccCChhhhh
Confidence 3468899999999999999998864
No 174
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=83.55 E-value=0.31 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.811 Sum_probs=11.7
Q ss_pred cccccccchhhhhcccc
Q psy3876 69 LTDCLACSGCITSAESV 85 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ 85 (477)
.++|+.||.|+.+||..
T Consensus 2 ~~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVY 18 (57)
T ss_dssp HHC--S-SHHHHCSHHH
T ss_pred HHHccCccChHHHChhh
Confidence 46899999999999953
No 175
>PRK08764 ferredoxin; Provisional
Probab=83.35 E-value=0.5 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=20.0
Q ss_pred cccccccccchhhhhcccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+..+.|+.|+.|+++||+++|..
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred ECcccCcCcchHHHhCChhhcCc
Confidence 46689999999999999988754
No 176
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=83.07 E-value=0.39 Score=48.52 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.4
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++.+.|.+||.|+.+||++||...+
T Consensus 168 ~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 168 KVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred ccCHHHhchhHhHHHhCCCCceeecc
Confidence 58889999999999999999998654
No 177
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=82.81 E-value=0.68 Score=47.57 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.3
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
+....-|++||.|+++||.+.
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred ccCccccCCcCchhhhCCCCC
Confidence 456778999999999999986
No 178
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=82.05 E-value=0.32 Score=54.56 Aligned_cols=21 Identities=19% Similarity=0.672 Sum_probs=17.9
Q ss_pred ccccccccccccchhhhhccc
Q psy3876 64 KVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
....+.++||.||.||++|..
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~e 630 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEE 630 (652)
T ss_pred CeEeccccccCchHHHHHHHH
Confidence 356889999999999988874
No 179
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=82.03 E-value=0.56 Score=55.98 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=22.5
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
..++.++|+.||.|+.+||++||...
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~ 703 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPK 703 (1165)
T ss_pred ceeccccCCCccchHHhcChhhcccc
Confidence 35788999999999999999998753
No 180
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=82.01 E-value=0.83 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.1
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....+.|+.||.|.++||.+.
T Consensus 50 ~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 50 DESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCCCCcCcCcCccCcccCCCC
Confidence 345689999999999999976
No 181
>KOG3256|consensus
Probab=81.92 E-value=0.47 Score=43.28 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.4
Q ss_pred ccccccccccccchhhhhccccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.....++||+|--|+.+||..||...
T Consensus 105 Ryp~geerCIACklCeavCPaqaitie 131 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAITIE 131 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccceee
Confidence 334567899999999999999998763
No 182
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=81.77 E-value=0.65 Score=46.62 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.9
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|..||.|..+||.+.
T Consensus 205 i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 205 SWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred CCcccCcccchhhCCCCC
Confidence 468999999999999865
No 183
>COG1146 Ferredoxin [Energy production and conversion]
Probab=81.74 E-value=0.52 Score=36.59 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=21.1
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.|+.+.|++||.|+.+||.+.+..
T Consensus 4 ~Id~~~C~~c~~C~~~CP~~~~~~ 27 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPAGVFDL 27 (68)
T ss_pred EECchhcCCCChheeccChhhEEe
Confidence 488889999999999999988654
No 184
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=81.66 E-value=14 Score=39.91 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCcEEEE---Cccchhh---hHHHHH----HHHHHHhhcCCCCcccccChhHHHHHHHhcCCCccCC
Q psy3876 138 QVVAKLCGFFKRLGVDLVLD---VGIAHCF---SLVELE----NEFLDRFLSGGGPLFTSECPGWVCYAEKSHGEFILPY 207 (477)
Q Consensus 138 ~~~~~l~~~Lk~lGf~~V~D---t~~~ad~---~~~e~~----~e~~~~~~~~~~p~itS~CP~~V~yiEk~~p~~Lip~ 207 (477)
+....+...|+++|++.++- ..-|... --.+.+ +..++.+++...+.|-+.||+=..-..+.||+ + +
T Consensus 277 ~~~~a~~~vL~~~G~~~~~~~~~~CCG~p~~~~G~~~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~-~-~- 353 (486)
T PRK06259 277 EVGKDAIRVLNAHGISVIIPKNQVCCGSPLIRTGQTDVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKE-K-E- 353 (486)
T ss_pred HHHHHHHHHHHHCCCeEecCCCCCcccHHHHhcCCHHHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhccc-c-c-
Confidence 45678889999999998753 2222211 011222 22233332224565666789876666666765 1 1
Q ss_pred CCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccch
Q psy3876 208 ISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKK 249 (477)
Q Consensus 208 ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK 249 (477)
..|.+--+.... ... ..+.+.+..+.+=-||...+
T Consensus 354 -~~v~~i~e~L~~-----~~~-~~~~~~~~~v~~HdpC~~~r 388 (486)
T PRK06259 354 -FNVMDITEVLVE-----VGL-EKYKPLDITVTYHDPCHLRR 388 (486)
T ss_pred -cceeeHHHHHHH-----cCC-ccCCCCCceEEEECchhccc
Confidence 133333333322 111 11223344567778999885
No 185
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=80.77 E-value=0.54 Score=39.28 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=33.1
Q ss_pred CCcccc--ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccc-cccc
Q psy3876 21 PSQECI--KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAES-VLIT 88 (477)
Q Consensus 21 ~~~~CI--~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~-~ai~ 88 (477)
+.+.|. .|+.+||..- ....++ ++..++-+.|+-||.|--.||. ++++
T Consensus 34 ~~~~~~~~~l~~aCPA~~------Y~~~~~--------------g~l~~~yegClECGTCRvlc~~~~~i~ 84 (99)
T COG2440 34 DCQECEDKPLIKACPAGC------YKLIDD--------------GKLRFDYEGCLECGTCRVLCPHSGLIQ 84 (99)
T ss_pred hhhhccchhhhhcCCHHH------eeECCC--------------CcEEEeecCeeeccceeEecCCCcceE
Confidence 345666 6678888742 222221 4556888999999999999998 6654
No 186
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=80.58 E-value=0.59 Score=45.48 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=23.1
Q ss_pred ccccccccccccchhhhhcccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+.|+.+.|+.|+.|+.+||.+++..
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~ 193 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEM 193 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEE
Confidence 45789999999999999999999765
No 187
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=80.38 E-value=0.62 Score=45.98 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=16.3
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
..+|..||.|..+||.+.
T Consensus 211 v~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 211 FGNCTNTGECEAVCPKGI 228 (250)
T ss_pred cccCcccCccccccCCCC
Confidence 468999999999999976
No 188
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=80.36 E-value=0.89 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.821 Sum_probs=17.0
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
..++|+.||+|...||+..
T Consensus 349 ~as~CieCgqCl~~CPq~l 367 (391)
T COG1453 349 KASDCIECGQCLEKCPQHL 367 (391)
T ss_pred cccccchhhhhhhcCCCcC
Confidence 3579999999999999986
No 189
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=80.04 E-value=1.3 Score=33.35 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=13.4
Q ss_pred cccccchhhhhcccccccccC
Q psy3876 71 DCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.|+.||.|+.+||++......
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~ 21 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDE 21 (61)
T ss_dssp T----STTGGGSHHHHHCTTT
T ss_pred CCCCCCcCcccCCCccccCcc
Confidence 499999999999998765443
No 190
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=80.00 E-value=0.69 Score=34.18 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=8.5
Q ss_pred ccccccchhhhhcccc
Q psy3876 70 TDCLACSGCITSAESV 85 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ 85 (477)
..|+.||.|..+||++
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 7899999999999986
No 191
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=79.31 E-value=0.76 Score=45.39 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.6
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|..|+.|..+||.+.
T Consensus 198 gl~~C~~C~~C~~vCPkgI 216 (251)
T PRK12386 198 GLGYCNITKCCTEVCPEHI 216 (251)
T ss_pred CcccCcCCCCcCCcCCCCc
Confidence 4567999999999999876
No 192
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=79.08 E-value=0.76 Score=45.87 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=18.9
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
++.++|++|+.|+.+||.+++
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i 225 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQV 225 (271)
T ss_pred CCcccCcccCCcCCcCCCcce
Confidence 778899999999999998764
No 193
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=78.88 E-value=0.8 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.5
Q ss_pred ccccccccchhhhhcccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
..+.|..|+.|+++||++||..
T Consensus 157 ~~~~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 157 IEEYCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCCCCccHHHHHHhcCcccccC
Confidence 4678999999999999999864
No 194
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=78.00 E-value=1.6 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.5
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..+.|+.|+.|.++||.+..
T Consensus 50 ~~~~C~~C~~C~~~CP~~i~ 69 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSDVK 69 (397)
T ss_pred ccccCcCcCccchhcCCCCC
Confidence 46799999999999999863
No 195
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=77.73 E-value=1 Score=33.83 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=11.4
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.....|+.||.|..+||++.
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 56789999999999999874
No 196
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=76.99 E-value=1.6 Score=45.86 Aligned_cols=20 Identities=20% Similarity=0.826 Sum_probs=17.1
Q ss_pred cccccchhhhhccccccccc
Q psy3876 71 DCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+||.|+.|+.+|+.......
T Consensus 246 ~CI~C~~CidaCd~~~~~~~ 265 (386)
T COG0348 246 ECIGCGRCIDACDDDMLKFN 265 (386)
T ss_pred ccccHhhHhhhCCHHhheec
Confidence 69999999999998776544
No 197
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=76.45 E-value=1 Score=44.39 Aligned_cols=21 Identities=14% Similarity=0.629 Sum_probs=18.2
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....+.||.||.|+.+||+..
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGS 173 (250)
T ss_pred hhCccccCCCcccccccCCcc
Confidence 356788999999999999875
No 198
>PRK13984 putative oxidoreductase; Provisional
Probab=75.30 E-value=1.2 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.5
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.++.+.|+.||.|+.+||.+++..
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~~ai~~ 64 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPTDAITM 64 (604)
T ss_pred cccChhhCcCccchhhhCCccceEe
Confidence 4567889999999999999998754
No 199
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=75.22 E-value=0.64 Score=46.72 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=16.5
Q ss_pred ccccc-ccchhhhhcccccccc
Q psy3876 69 LTDCL-ACSGCITSAESVLITQ 89 (477)
Q Consensus 69 ~~~Ci-~Cg~Cv~~Cp~~ai~~ 89 (477)
...|+ .|+.|..+||.+....
T Consensus 207 ~~~~~~gCd~Cq~vCP~n~~~~ 228 (282)
T TIGR00276 207 CGGRSYGCDICQEVCPWNKKGQ 228 (282)
T ss_pred hcCcccCCCCccccCCCCCCCC
Confidence 45687 6999999999987443
No 200
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=75.17 E-value=0.97 Score=48.32 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=23.6
Q ss_pred cccccccccccccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
-.|.++.+.|..||.|+. ||.+||+..
T Consensus 554 ~~a~vde~~C~gC~~C~~-Cpf~ais~~ 580 (622)
T COG1148 554 FVATVDEDKCTGCGICAE-CPFGAISVD 580 (622)
T ss_pred cccccchhhhcCCcceee-CCCCceecc
Confidence 346789999999999999 999999864
No 201
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=74.99 E-value=1.8 Score=44.17 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=11.6
Q ss_pred ccchhhhhccccc
Q psy3876 74 ACSGCITSAESVL 86 (477)
Q Consensus 74 ~Cg~Cv~~Cp~~a 86 (477)
.||.|+.+||..-
T Consensus 268 ~C~~C~~~CPf~~ 280 (314)
T TIGR02486 268 GCGVCQAVCPFNK 280 (314)
T ss_pred CCCCCeeECCCCC
Confidence 5999999999983
No 202
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=74.64 E-value=1.3 Score=45.03 Aligned_cols=22 Identities=14% Similarity=0.576 Sum_probs=19.1
Q ss_pred cccccccccccchhhhhccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
..++.+.|+.||.|+.+||..|
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a 185 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKA 185 (314)
T ss_pred CceeCccCCcchHHHHhcChhh
Confidence 3578899999999999999754
No 203
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=74.55 E-value=1.1 Score=44.22 Aligned_cols=20 Identities=15% Similarity=0.513 Sum_probs=17.5
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
+.++|++|+.|+++||++++
T Consensus 199 ~~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred ccccCeEcCCccCcCCCCce
Confidence 37899999999999998863
No 204
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=74.46 E-value=1.6 Score=45.07 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=16.6
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|++||.|+++||.+.
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 4568999999999999875
No 205
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=74.26 E-value=1.3 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.1
Q ss_pred cccccccchhhhhcccccccccC
Q psy3876 69 LTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
...|..|+.|+++||++||....
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~~~~ 226 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAISKGG 226 (314)
T ss_pred cccCcchhHHHhhCCccccCCCC
Confidence 36899999999999999997653
No 206
>PRK13795 hypothetical protein; Provisional
Probab=74.15 E-value=1.3 Score=49.51 Aligned_cols=28 Identities=14% Similarity=0.458 Sum_probs=23.5
Q ss_pred cccccccccccccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+..+..+.|+.||.|+.+||++||...
T Consensus 574 ~~~v~~~~~C~~Cg~C~~~CP~~ai~~~ 601 (636)
T PRK13795 574 ARLLRRAAECVGCGVCVGACPTGAIRIE 601 (636)
T ss_pred CeEEEccccCCCHhHHHHhCCcccEEee
Confidence 4456778899999999999999998654
No 207
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=73.80 E-value=12 Score=33.81 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=47.5
Q ss_pred cccccccc-cccchhhhhc--ccccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHH
Q psy3876 65 VEISLTDC-LACSGCITSA--ESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVA 141 (477)
Q Consensus 65 a~I~~~~C-i~Cg~Cv~~C--p~~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~ 141 (477)
+.|-...| +.|..|-+.. +...-...+.+++.+.++.+.. ..-.|++++ || + +.....
T Consensus 18 ~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~---------~~~gVt~SG------GE-l---~~~~l~ 78 (147)
T TIGR02826 18 LAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS---------LISCVLFLG------GE-W---NREALL 78 (147)
T ss_pred EEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC---------CCCEEEEec------hh-c---CHHHHH
Confidence 34666678 7788887631 1111112233455554444321 122578888 77 3 234678
Q ss_pred HHHHHHHHcCCcEEEECccc
Q psy3876 142 KLCGFFKRLGVDLVLDVGIA 161 (477)
Q Consensus 142 ~l~~~Lk~lGf~~V~Dt~~~ 161 (477)
.|+..+|++|++..++|+..
T Consensus 79 ~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 79 SLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred HHHHHHHHCCCCEEEECCCC
Confidence 99999999999999999743
No 208
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=73.64 E-value=1.4 Score=44.24 Aligned_cols=20 Identities=20% Similarity=0.728 Sum_probs=17.4
Q ss_pred cccccccccccchhhhhccc
Q psy3876 65 VEISLTDCLACSGCITSAES 84 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
..++.++||.||.||++|..
T Consensus 207 i~~D~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 207 TRVVLNRCIHCTRCVRFLNE 226 (297)
T ss_pred eeecCCcCcCccHHHHHHHH
Confidence 34778999999999999985
No 209
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=73.19 E-value=1.4 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.674 Sum_probs=19.1
Q ss_pred ccccccccchhhhhcccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
....||.||.|+.+||.+++..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~ 389 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQ 389 (695)
T ss_pred chhhcCCcccHHHHCCccchhh
Confidence 5678999999999999998743
No 210
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=72.15 E-value=1.4 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=14.9
Q ss_pred ccccccchhhhhccccc
Q psy3876 70 TDCLACSGCITSAESVL 86 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~a 86 (477)
+.|+.||.|..+||+..
T Consensus 2 ~~Ci~CG~C~~~CP~~~ 18 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGR 18 (144)
T ss_pred ccccCCCCCcCcCCCcc
Confidence 47999999999999853
No 211
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=71.34 E-value=3.3 Score=39.51 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=26.7
Q ss_pred ccccccc------c---hhhhhcccccccccChHHHHH-HHHHhh
Q psy3876 69 LTDCLAC------S---GCITSAESVLITQQSHEEVMK-VIRENN 103 (477)
Q Consensus 69 ~~~Ci~C------g---~Cv~~Cp~~ai~~~s~~~~~~-~l~~~~ 103 (477)
.++|..| | .||.+||++|+...+.++..+ .+..+.
T Consensus 126 ~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~~v~~~~ 170 (203)
T COG0437 126 VDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPKSKRVAELK 170 (203)
T ss_pred ccccCcchhhHhcCCCCcccccCCcccccccchhhcchhhhhhhc
Confidence 6789999 8 899999999998776556555 444443
No 212
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=71.17 E-value=1.5 Score=45.30 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=14.6
Q ss_pred ccccccchhhhhcccc
Q psy3876 70 TDCLACSGCITSAESV 85 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ 85 (477)
++||.||+|..+||+=
T Consensus 226 ~rCi~Cg~C~~~CPtC 241 (344)
T PRK15055 226 SRCIACGRCNFVCPTC 241 (344)
T ss_pred hhCccCccccccCCce
Confidence 4899999999999983
No 213
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=70.53 E-value=1.8 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.674 Sum_probs=19.5
Q ss_pred cccccccccccccchhhhhccc
Q psy3876 63 KKVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
+....+.++||.||.||++|+.
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~e 155 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKD 155 (819)
T ss_pred CcEEechhhcccccHHHhhCcc
Confidence 4567899999999999999995
No 214
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=70.25 E-value=1.4 Score=36.33 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=22.7
Q ss_pred cccccccccccchhhhhccccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
..++.+.|+.|..|.--||-.+|...
T Consensus 30 Pv~d~~kCi~C~~C~~yCPe~~i~~~ 55 (91)
T COG1144 30 PVVDEDKCINCKLCWLYCPEPAILEE 55 (91)
T ss_pred eEEcccccccCceeEEECCchheeec
Confidence 46899999999999999999988653
No 215
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=70.19 E-value=1.1 Score=47.20 Aligned_cols=18 Identities=39% Similarity=0.833 Sum_probs=16.1
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|+.||.|.++||.+.
T Consensus 72 ~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 72 LDRCLTCRNCETTCPSGV 89 (407)
T ss_pred cccCccccchhhhCCCCC
Confidence 578999999999999865
No 216
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=70.09 E-value=2.4 Score=40.04 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred ccccccccchhhhhcccccccccChHHH
Q psy3876 68 SLTDCLACSGCITSAESVLITQQSHEEV 95 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~ 95 (477)
.+..|++||-|..+||++=.+.-+.-.+
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t~y~pR~i 64 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFTDYSPRKI 64 (195)
T ss_pred hHhHhhccCcccCCCCCcccCCCCHHHH
Confidence 3667999999999999987665553343
No 217
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=69.64 E-value=2.5 Score=40.75 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=16.7
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|+.||.|..+||.+.
T Consensus 192 ~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CCccCccccccccccCCCC
Confidence 4568999999999999876
No 218
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=69.60 E-value=2 Score=45.76 Aligned_cols=18 Identities=28% Similarity=0.818 Sum_probs=16.4
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.++|++|+.|+.+||++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred CCCCCChhhhHHhCCCCC
Confidence 578999999999999884
No 219
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=68.68 E-value=1.9 Score=42.60 Aligned_cols=19 Identities=26% Similarity=0.835 Sum_probs=16.6
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....||.||.|+.+||+..
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 4578999999999999875
No 220
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=68.59 E-value=15 Score=33.25 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=51.7
Q ss_pred cccccc-cccchhhhhcccc--cccccChHHHHHHHHHhhhccccCCCCCc-EEEEEecccchhhhhhhcCCCHHHHHHH
Q psy3876 67 ISLTDC-LACSGCITSAESV--LITQQSHEEVMKVIRENNAHKASSNENTK-TIVLSLAIQPVLSLGAKFALSHEQVVAK 142 (477)
Q Consensus 67 I~~~~C-i~Cg~Cv~~Cp~~--ai~~~s~~~~~~~l~~~~~~~~~~~~~~~-~~vvsisP~~~~sl~~~f~l~~~~~~~~ 142 (477)
|-...| +.|-.|-.-.-.. .-..-+.+++.++++.+.+ .. .--|++++ +|++=-.......+
T Consensus 20 if~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~--------~~~~~gVt~sG------GEPllq~~~~~l~~ 85 (154)
T TIGR02491 20 LFVAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLND--------NPLIDGLTLSG------GDPLYPRNVEELIE 85 (154)
T ss_pred EEECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHh--------cCCcCeEEEeC------hhhCCCCCHHHHHH
Confidence 444567 6777776532111 0112223346666776653 22 23488898 89862111256788
Q ss_pred HHHHHHHc-CCcEEEECccchhhhHH
Q psy3876 143 LCGFFKRL-GVDLVLDVGIAHCFSLV 167 (477)
Q Consensus 143 l~~~Lk~l-Gf~~V~Dt~~~ad~~~~ 167 (477)
++..+|+. |++.+.+++......++
T Consensus 86 ll~~~k~~~~~~~~~~~tG~~~~~~~ 111 (154)
T TIGR02491 86 LVKKIKAEFPEKDIWLWTGYTWEEIL 111 (154)
T ss_pred HHHHHHHhCCCCCEEEeeCccHHHHh
Confidence 89999965 88889999887654443
No 221
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.47 E-value=1.8 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=19.8
Q ss_pred cccccccccccccchhhhhcccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESV 85 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ 85 (477)
.++.++.++|+.||.|+.+||.+
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~ 357 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDT 357 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCc
Confidence 44568889999999999999974
No 222
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=68.11 E-value=2 Score=41.82 Aligned_cols=22 Identities=18% Similarity=0.684 Sum_probs=18.9
Q ss_pred cccccccccccccchhhhhccc
Q psy3876 63 KKVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
....++.++|+.||.|+.+||.
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHH
Confidence 4456888999999999999994
No 223
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=68.04 E-value=1.7 Score=46.69 Aligned_cols=20 Identities=35% Similarity=0.740 Sum_probs=17.9
Q ss_pred cccccchhhhhccccccccc
Q psy3876 71 DCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
-|+.||.|+.+||..++-.|
T Consensus 366 sCi~C~~C~d~CP~~Llp~q 385 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQ 385 (529)
T ss_pred ccccHHHHHHhCccccCHHH
Confidence 79999999999999987654
No 224
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=67.97 E-value=2.6 Score=43.36 Aligned_cols=25 Identities=12% Similarity=0.454 Sum_probs=21.3
Q ss_pred ccccccchhhhhcccccccccChHH
Q psy3876 70 TDCLACSGCITSAESVLITQQSHEE 94 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ai~~~s~~~ 94 (477)
+.|-.|..|+.+||++||......+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~ 209 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVD 209 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccc
Confidence 8999999999999999997655333
No 225
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=67.79 E-value=1.9 Score=44.28 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=15.2
Q ss_pred cccccccchhhhhcccc
Q psy3876 69 LTDCLACSGCITSAESV 85 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ 85 (477)
.++||+||.|..+||+=
T Consensus 219 ~~rCi~C~~C~~~CPtC 235 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTC 235 (334)
T ss_pred HhhCCcCccccccCCce
Confidence 45999999999999985
No 226
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=67.60 E-value=2 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.647 Sum_probs=18.8
Q ss_pred cccccccccchhhhhccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
...+.|+.||.|..+||+....
T Consensus 4 ~~~~~Ci~Cg~C~~~CP~~~~~ 25 (396)
T PRK11168 4 TSFDSCIKCTVCTTACPVARVN 25 (396)
T ss_pred cchhhcCCCCCCCccCCCcccC
Confidence 4567899999999999998764
No 227
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=66.72 E-value=0.93 Score=49.11 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=33.0
Q ss_pred cCCCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccc
Q psy3876 19 IGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 19 i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
++-+-.|-.|.++||..- .-..++.....|..+.. .=..+.|++||.|-++||.+.
T Consensus 399 a~kc~~cG~C~~~CP~~l-~i~eam~~A~~Gd~~~l-----------~~l~d~C~~C~rCEq~Cpk~i 454 (772)
T COG1152 399 ARKCTYCGNCMRACPNEL-DIPEAMEYAAKGDFSKL-----------EDLHDVCIGCGRCEQVCPKNI 454 (772)
T ss_pred HHhcccccchhccCCccc-chHHHHHHhhcCChHHH-----------HHHHHHhhhhhhhhhhCcccC
Confidence 555666777779999752 11111222222222111 123678999999999999765
No 228
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=66.67 E-value=2 Score=41.42 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=17.0
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..+.||.||.|+.+||+...
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~ 155 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWW 155 (220)
T ss_pred hhhhccccccccccCCCCcc
Confidence 35889999999999998743
No 229
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=65.85 E-value=2.3 Score=42.69 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=17.3
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..+.||.||.|+.+||+...
T Consensus 150 ~~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred cchhCcccCcccccCCCccc
Confidence 45799999999999998754
No 230
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=64.96 E-value=2.5 Score=41.24 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=18.4
Q ss_pred ccccccccchhhhhcccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
....||.||-|+++||+.....
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~ 161 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNP 161 (234)
T ss_pred hhhhccccchhhhhCCcccccc
Confidence 4578999999999999876544
No 231
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=64.68 E-value=2.2 Score=44.57 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=14.7
Q ss_pred cccccccchhhhhccc
Q psy3876 69 LTDCLACSGCITSAES 84 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~ 84 (477)
.+.|.+||.|...||+
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4589999999999999
No 232
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=64.45 E-value=1.3 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
-..-+||-||.|.-+||.+---.|
T Consensus 401 ~~l~dCIECg~Ca~vCPs~iplvq 424 (529)
T COG4656 401 HNLLDCIECGACAYVCPSNIPLVQ 424 (529)
T ss_pred HHhhhhhhhCcchhcCCCCCCHHH
Confidence 467799999999999999864443
No 233
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=64.43 E-value=2.9 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.642 Sum_probs=21.0
Q ss_pred ccccccccccccchhhhhcccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
++.+ .+.|..|+.|+.+||.+++..
T Consensus 164 ~I~i-~~~C~~C~~C~~~CP~~vi~~ 188 (263)
T PRK00783 164 RIEV-SEDCDECEKCVEACPRGVLEL 188 (263)
T ss_pred cccc-cccCCchHHHHHhCCccccEe
Confidence 3455 689999999999999998764
No 234
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=64.30 E-value=2.9 Score=44.63 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=18.4
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
...+.|+.||.|+.+||.+++
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred ccCCcCcCccchhhhCccchh
Confidence 566899999999999999865
No 235
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=63.47 E-value=2.6 Score=44.18 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=21.8
Q ss_pred ccccccccccccchhh--hhcccccccc
Q psy3876 64 KVEISLTDCLACSGCI--TSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv--~~Cp~~ai~~ 89 (477)
+..++.++|+.|+.|+ .+||++||..
T Consensus 296 ~p~id~dkCi~Cg~C~~~~aCPt~AI~~ 323 (391)
T TIGR03287 296 RPKYNPERCENCDPCLVEEACPVPAIKK 323 (391)
T ss_pred eEEEchhhCcCCCCCcCCcCCCHhhEec
Confidence 3467888999999995 8999999863
No 236
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=62.90 E-value=3 Score=40.83 Aligned_cols=21 Identities=19% Similarity=0.700 Sum_probs=17.4
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
-...+||.||.|..+||+...
T Consensus 146 ~~~~~CI~Cg~C~saCP~~~~ 166 (239)
T PRK13552 146 YELDRCIECGCCVAACGTKQM 166 (239)
T ss_pred hchhhccccchhHhhCCCCcc
Confidence 356789999999999997653
No 237
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=62.88 E-value=3 Score=47.79 Aligned_cols=20 Identities=20% Similarity=0.790 Sum_probs=17.5
Q ss_pred cccccccccccchhhhhccc
Q psy3876 65 VEISLTDCLACSGCITSAES 84 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
...+.++||.||.||++|..
T Consensus 139 i~~d~~rCi~C~rCvr~c~e 158 (776)
T PRK09129 139 ISTEMTRCIHCTRCVRFGQE 158 (776)
T ss_pred eeecccccccCcHHHHHHHH
Confidence 45789999999999999973
No 238
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=62.35 E-value=4.4 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.3
Q ss_pred ccccccccccccchhhh-hccc
Q psy3876 64 KVEISLTDCLACSGCIT-SAES 84 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~-~Cp~ 84 (477)
|+.|+.+.|..|+-|+. .||+
T Consensus 656 K~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 656 KRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred cEEECHHHCCCccccccCCCCC
Confidence 57899999999999999 9994
No 239
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=62.27 E-value=3.2 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.752 Sum_probs=18.0
Q ss_pred ccccccccccccchhhhhccc
Q psy3876 64 KVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
....+.++||.||.||++|..
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e 156 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANE 156 (603)
T ss_pred CeEecCCcCccccHHHHHHHH
Confidence 346789999999999999963
No 240
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=61.98 E-value=5.4 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=16.1
Q ss_pred ccccccchhhhhcccccc
Q psy3876 70 TDCLACSGCITSAESVLI 87 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..|..||.|..+||.+..
T Consensus 46 ~~C~~Cg~C~~~CP~~i~ 63 (144)
T TIGR03290 46 WMCTTCYTCQERCPRDVK 63 (144)
T ss_pred CcCcCcCchhhhcCCCCC
Confidence 579999999999999873
No 241
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=61.03 E-value=3 Score=44.54 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=16.3
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...+|+.||.|..+||+-.
T Consensus 291 e~~~CIrCG~C~~~CPvy~ 309 (432)
T TIGR00273 291 EVLACIRCGACQNECPVYR 309 (432)
T ss_pred hHhhCCCCCCccccCcchh
Confidence 4678999999999999754
No 242
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=60.98 E-value=8.1 Score=35.68 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=37.9
Q ss_pred CCC-cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc------hhhhhcccc
Q psy3876 16 DDF-IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS------GCITSAESV 85 (477)
Q Consensus 16 dD~-i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg------~Cv~~Cp~~ 85 (477)
|++ +.+.++||-|. .+||-. .|.+..++.. ++=...+|..|. .||.+||+.
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfG------ai~~~~~~~~-------------~~~~a~KCdlC~~~e~gpaCVe~CP~~ 134 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFG------AITMVSYPVA-------------AKAVAVKCDLCAGREVGPACVEACPTE 134 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcc------eEEEEeecCc-------------chhhhhhcccccCccCCCceeeeCCHH
Confidence 666 56889999877 688864 3766654110 011223577775 499999999
Q ss_pred cccccC
Q psy3876 86 LITQQS 91 (477)
Q Consensus 86 ai~~~s 91 (477)
|+..-+
T Consensus 135 AL~lv~ 140 (165)
T COG1142 135 ALELVD 140 (165)
T ss_pred Hhhccc
Confidence 987765
No 243
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=60.72 E-value=3.1 Score=41.09 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=16.4
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...+||.||-|+.+||+..
T Consensus 140 ~~~~CI~CG~C~s~CPv~~ 158 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVR 158 (251)
T ss_pred chhhcccCCcccCcCCccc
Confidence 4567999999999999865
No 244
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=59.13 E-value=3.7 Score=40.62 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=18.8
Q ss_pred cccccccchhhhhcccccccc
Q psy3876 69 LTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++|.+|+.|+.+||.+++..
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred hhhCCChHHHHHhCCccceEc
Confidence 478999999999999999864
No 245
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=58.86 E-value=5.3 Score=38.86 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=16.1
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|..||.|..+||.+.
T Consensus 197 i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 197 VFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred cccCcCcCCcCccccCCC
Confidence 468999999999999865
No 246
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=58.38 E-value=3.4 Score=46.42 Aligned_cols=18 Identities=17% Similarity=0.704 Sum_probs=16.3
Q ss_pred ccccccccccchhhhhcc
Q psy3876 66 EISLTDCLACSGCITSAE 83 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp 83 (477)
.-+.+.||.||+||.+|.
T Consensus 145 ~ydp~qCIlCgRCVeaCq 162 (978)
T COG3383 145 IYDPNQCILCGRCVEACQ 162 (978)
T ss_pred EecchheeehhHHHHHHH
Confidence 467889999999999999
No 247
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=57.92 E-value=4 Score=46.26 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=16.8
Q ss_pred cccccccccccchhhhhcc
Q psy3876 65 VEISLTDCLACSGCITSAE 83 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp 83 (477)
...+.++||.||.||+.|.
T Consensus 140 i~~~~~rCI~C~rCvr~c~ 158 (687)
T PRK09130 140 VKTVMTRCIHCTRCVRFAT 158 (687)
T ss_pred EEEecccCCcccHHHHHHH
Confidence 4577899999999999996
No 248
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=57.81 E-value=3.5 Score=46.39 Aligned_cols=20 Identities=15% Similarity=0.722 Sum_probs=18.1
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.+.++||.|+.||+.|...+
T Consensus 141 ~dm~RCI~C~RCVR~c~eia 160 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIA 160 (693)
T ss_pred cccccceechhhHHhhhhhc
Confidence 88999999999999998655
No 249
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=57.47 E-value=3.7 Score=42.70 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=17.7
Q ss_pred ccccccccchhhhhccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
..+.|-+||.|-+.||..+-.
T Consensus 46 la~lChnC~~C~~~CPy~pPH 66 (372)
T TIGR02484 46 LAHLCHDCQSCWHDCQYAPPH 66 (372)
T ss_pred HHHHCcCcccccccCcCCCCc
Confidence 357899999999999997743
No 250
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=57.43 E-value=4.4 Score=47.04 Aligned_cols=19 Identities=21% Similarity=0.721 Sum_probs=17.2
Q ss_pred cccccccccccchhhhhcc
Q psy3876 65 VEISLTDCLACSGCITSAE 83 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp 83 (477)
...+.++||.||.||++|.
T Consensus 144 i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 144 ISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred eEecCCcCccccHHHHHHH
Confidence 4688899999999999997
No 251
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=57.24 E-value=5 Score=42.84 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred ccccccccccc--hhhhhcccccccc
Q psy3876 66 EISLTDCLACS--GCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg--~Cv~~Cp~~ai~~ 89 (477)
......|..|+ .|+.+||++||..
T Consensus 177 ~y~p~~C~HC~nP~CV~ACPtGAI~k 202 (492)
T TIGR01660 177 MYLPRLCEHCLNPACVASCPSGAIYK 202 (492)
T ss_pred EECCCcCcCCCcccchhhCccCCeEE
Confidence 45678999999 8999999999863
No 252
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=56.95 E-value=4.6 Score=43.28 Aligned_cols=21 Identities=0% Similarity=-0.254 Sum_probs=17.9
Q ss_pred ccccccccchhhhhccccccc
Q psy3876 68 SLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
....||.||.|+.+||.+++-
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P 391 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPP 391 (447)
T ss_pred CccceeECChHhhcCCCCCCH
Confidence 455699999999999998864
No 253
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=55.95 E-value=3.9 Score=40.17 Aligned_cols=19 Identities=16% Similarity=0.637 Sum_probs=16.2
Q ss_pred cccccccchhhhhcccccc
Q psy3876 69 LTDCLACSGCITSAESVLI 87 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
.++||.||-|+.+||+...
T Consensus 146 ~~~CI~Cg~C~saCP~~~~ 164 (244)
T PRK12385 146 FSGCINCGLCYAACPQFGL 164 (244)
T ss_pred HHhcCcCccccCcCcCccc
Confidence 4689999999999998543
No 254
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=55.43 E-value=25 Score=33.72 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=50.1
Q ss_pred cccccccc-cccchhhhhccc-----ccccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHH
Q psy3876 65 VEISLTDC-LACSGCITSAES-----VLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQ 138 (477)
Q Consensus 65 a~I~~~~C-i~Cg~Cv~~Cp~-----~ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~ 138 (477)
+-+...-| +.|..|-+.--. ..-...+.+++.+.++.+. .+..-|++++ |+++-. .
T Consensus 25 vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~---------~~~~~V~lTG------GEP~~~---~ 86 (212)
T COG0602 25 VFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG---------YKARGVSLTG------GEPLLQ---P 86 (212)
T ss_pred EEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC---------CCcceEEEeC------CcCCCc---c
Confidence 34566677 458899863111 1122333344444444331 1223678888 887532 1
Q ss_pred HHHHHHHHHHHcCCcEEEECccchhhh
Q psy3876 139 VVAKLCGFFKRLGVDLVLDVGIAHCFS 165 (477)
Q Consensus 139 ~~~~l~~~Lk~lGf~~V~Dt~~~ad~~ 165 (477)
....|+..|+++||+..+||+..-...
T Consensus 87 ~l~~Ll~~l~~~g~~~~lETngti~~~ 113 (212)
T COG0602 87 NLLELLELLKRLGFRIALETNGTIPVW 113 (212)
T ss_pred cHHHHHHHHHhCCceEEecCCCCcccc
Confidence 367899999999999999998765443
No 255
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=55.41 E-value=6.7 Score=38.37 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.3
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|..||.|..+||.+.
T Consensus 200 l~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 200 LFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred cccccCcchhccccCCCC
Confidence 469999999999999876
No 256
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=54.84 E-value=5.1 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.615 Sum_probs=17.4
Q ss_pred cccccccccccchhhhhccc
Q psy3876 65 VEISLTDCLACSGCITSAES 84 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
...+.++||.|+.||++|..
T Consensus 145 i~~d~~rCI~C~rCvr~c~e 164 (797)
T PRK07860 145 VLLDRERCVLCARCTRFSDQ 164 (797)
T ss_pred eeecccccccCcHHHHHHHh
Confidence 45789999999999999963
No 257
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=54.70 E-value=7.1 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred ccccccccccccchhhh-hcccc
Q psy3876 64 KVEISLTDCLACSGCIT-SAESV 85 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~-~Cp~~ 85 (477)
|..|+.+.|..|+.|+. .||+-
T Consensus 670 K~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 670 KRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred cEEECHhHCCCccccccCCCCCc
Confidence 46799999999999999 99953
No 258
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=54.69 E-value=4.5 Score=40.53 Aligned_cols=17 Identities=35% Similarity=0.771 Sum_probs=15.0
Q ss_pred ccccccchhhhhccccc
Q psy3876 70 TDCLACSGCITSAESVL 86 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~a 86 (477)
..||.||-|..+||+..
T Consensus 187 ~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 187 YECILCACCSTSCPSYW 203 (276)
T ss_pred hhCccccccccccCCCc
Confidence 47999999999999754
No 259
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=54.08 E-value=4.9 Score=42.16 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=16.2
Q ss_pred cccccccchhhhhcccccc
Q psy3876 69 LTDCLACSGCITSAESVLI 87 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
.+.|+.||.|..+||+-..
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~ 22 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKA 22 (397)
T ss_pred hhhCCCCCCCcccCcCccc
Confidence 4679999999999998644
No 260
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=53.93 E-value=7.5 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred ccccccccccccchhhh-hccc
Q psy3876 64 KVEISLTDCLACSGCIT-SAES 84 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~-~Cp~ 84 (477)
|..|+.+.|..|+-|+. .||+
T Consensus 684 K~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 684 KRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEECHhHCCCccccccCCCCC
Confidence 56799999999999999 9996
No 261
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=53.80 E-value=3.9 Score=42.11 Aligned_cols=64 Identities=8% Similarity=0.053 Sum_probs=30.1
Q ss_pred CCccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccc
Q psy3876 21 PSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESV 85 (477)
Q Consensus 21 ~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ 85 (477)
.+-.|-+|+..||..+..+...+.-....++-.+.-... +.+-.....+.=-.|+-|+.+||-+
T Consensus 186 ~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~-p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 186 HCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGA-PEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred cChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCC-cHHHHHhccCceecCchHHHhCCcc
Confidence 456788888999998622222111110000000000000 1111122222233799999999976
No 262
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=53.59 E-value=4.4 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=16.8
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
....||.||-|..+||+...
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 142 GLYECILCACCSTACPSYWW 161 (235)
T ss_pred hhhhCcccccccccccCccc
Confidence 45679999999999998654
No 263
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=53.43 E-value=4.5 Score=42.70 Aligned_cols=15 Identities=20% Similarity=0.851 Sum_probs=13.7
Q ss_pred cccccchhhhhcccc
Q psy3876 71 DCLACSGCITSAESV 85 (477)
Q Consensus 71 ~Ci~Cg~Cv~~Cp~~ 85 (477)
.||-||.|..+||.-
T Consensus 309 ~CIRCGaC~n~CPvY 323 (459)
T COG1139 309 RCIRCGACLNHCPVY 323 (459)
T ss_pred HhhcchHhhhcChhh
Confidence 699999999999973
No 264
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=53.10 E-value=7.1 Score=38.38 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=15.5
Q ss_pred ccccccchhhhhccccc
Q psy3876 70 TDCLACSGCITSAESVL 86 (477)
Q Consensus 70 ~~Ci~Cg~Cv~~Cp~~a 86 (477)
..|..||.|..+||.+.
T Consensus 203 ~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 203 WSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhCcCcccccccCCCCC
Confidence 48999999999999865
No 265
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=52.84 E-value=4.9 Score=41.31 Aligned_cols=18 Identities=17% Similarity=0.658 Sum_probs=15.8
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
..+||.||.|..+||+..
T Consensus 151 ~~~Ci~CG~C~s~CP~~~ 168 (329)
T PRK12577 151 TGNCILCGACYSECNARE 168 (329)
T ss_pred hhhCcccCcccccCCCCC
Confidence 467999999999999864
No 266
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=52.01 E-value=4.7 Score=39.17 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=16.5
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|+.||.|..+||+..
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 139 GLYECILCACCSTSCPSFW 157 (232)
T ss_pred hHHhccccccccccCCccc
Confidence 4568999999999999864
No 267
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=51.96 E-value=6.2 Score=42.35 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=17.7
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
....-||.||.|+.+||.++.
T Consensus 371 ~~~~~CI~Cg~C~~vCP~~L~ 391 (448)
T PRK05352 371 GSERAMVPIGNYERVMPLDIL 391 (448)
T ss_pred CCCcceeecCcHhhcCCCCCC
Confidence 345689999999999999764
No 268
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=50.33 E-value=28 Score=31.74 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=41.6
Q ss_pred CcEEEEEecccchhhhh-h--hcCCCHHHHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHHh
Q psy3876 113 TKTIVLSLAIQPVLSLG-A--KFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRF 177 (477)
Q Consensus 113 ~~~~vvsisP~~~~sl~-~--~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~~ 177 (477)
-+.+|+++.|+.+.-+. . .+.+. +..+=...|+++|+++++-..|..++.-++ +++|++.+
T Consensus 37 ~~~~v~tF~~~P~~~~~~~~~~~~l~---s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls-~~~Fi~~i 100 (157)
T PF06574_consen 37 LKSVVLTFDPHPKEVLNPDKPPKLLT---SLEEKLELLESLGVDYVIVIPFTEEFANLS-PEDFIEKI 100 (157)
T ss_dssp -EEEEEEESS-CHHHHSCTCCGGBSS----HHHHHHHHHHTTESEEEEE-CCCHHCCS--HHHHHHHH
T ss_pred cceEEEEcccCHHHHhcCCCcccCCC---CHHHHHHHHHHcCCCEEEEecchHHHHcCC-HHHHHHHH
Confidence 35788999998776666 1 11132 467778899999999999998887765444 48898874
No 269
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=50.26 E-value=9 Score=37.80 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=16.0
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.-.|..||.|..+||.+.
T Consensus 208 ~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 208 IADCGNAQNCVRVCPKGI 225 (249)
T ss_pred eeCCcCcCcccccCCCCC
Confidence 378999999999999865
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.54 E-value=7.3 Score=45.89 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=18.3
Q ss_pred ccccccccc----chhhhhcccccc
Q psy3876 67 ISLTDCLAC----SGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~C----g~Cv~~Cp~~ai 87 (477)
-..++|++| |.|+.+||..|+
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~ 907 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRAN 907 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccc
Confidence 356799999 999999999994
No 271
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=48.95 E-value=10 Score=37.19 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=16.0
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.-.|..||.|..+||.+.
T Consensus 205 i~~C~~C~~C~~vCPk~I 222 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKDL 222 (239)
T ss_pred cCCCcCcCccchhCCCCC
Confidence 468999999999999865
No 272
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=48.87 E-value=44 Score=32.54 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=49.4
Q ss_pred cccccccc-ccchhhhhccccccc-----ccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHH
Q psy3876 66 EISLTDCL-ACSGCITSAESVLIT-----QQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQV 139 (477)
Q Consensus 66 ~I~~~~Ci-~Cg~Cv~~Cp~~ai~-----~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~ 139 (477)
.|-...|- .|..|-+.+...... ..+..++.+.++.+.. ...-.++|++ ||.+ + . ..
T Consensus 26 FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~--------~~~~~V~lTG------GEPl-l-~-~~ 88 (238)
T TIGR03365 26 FVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG--------GTPLHVSLSG------GNPA-L-Q-KP 88 (238)
T ss_pred EEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC--------CCCCeEEEeC------Cchh-h-h-Hh
Confidence 45666773 488887755221111 1233455554444321 1233577788 8875 2 2 24
Q ss_pred HHHHHHHHHHcCCcEEEECccchh
Q psy3876 140 VAKLCGFFKRLGVDLVLDVGIAHC 163 (477)
Q Consensus 140 ~~~l~~~Lk~lGf~~V~Dt~~~ad 163 (477)
...|+..|+++|++..++|+....
T Consensus 89 l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 89 LGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCc
Confidence 679999999999999999998753
No 273
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.87 E-value=7.3 Score=45.93 Aligned_cols=18 Identities=22% Similarity=0.636 Sum_probs=16.6
Q ss_pred ccccc----cchhhhhcccccc
Q psy3876 70 TDCLA----CSGCITSAESVLI 87 (477)
Q Consensus 70 ~~Ci~----Cg~Cv~~Cp~~ai 87 (477)
++|+. ||.|+.+||.+|+
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Ai 902 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRAN 902 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhh
Confidence 79996 9999999999985
No 274
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=46.47 E-value=6.4 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.483 Sum_probs=19.0
Q ss_pred ccccccccccccchhhhhccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...-..++|+.||.|+.+||+.+
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNEL 420 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCc
Confidence 34456789999999999999875
No 275
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=45.12 E-value=8.2 Score=43.96 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=17.8
Q ss_pred ccccccccccchhhhhccccc
Q psy3876 66 EISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.-..+.|+.||.|+.+||...
T Consensus 395 l~~~~kCI~CG~Cv~aCP~~l 415 (784)
T TIGR00314 395 MELANKCTQCGNCVRTCPNSL 415 (784)
T ss_pred hhhcccCCCcccchhhCCCCc
Confidence 345689999999999999874
No 276
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=45.09 E-value=12 Score=38.44 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=16.0
Q ss_pred cccccccchhhhhccccc
Q psy3876 69 LTDCLACSGCITSAESVL 86 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~a 86 (477)
...|..|+.|..+||.+.
T Consensus 208 iw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 208 VWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred cccCcChhhhhhhCCCCC
Confidence 468999999999999875
No 277
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=44.38 E-value=8.7 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=18.4
Q ss_pred cccccccccccchhhhhccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
..-..++|+.||.|+.+||+..
T Consensus 360 l~~~~~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 360 FQELAAKCTDCGWCTRACPNSL 381 (731)
T ss_pred HHHhhhcCCCCCcccccCCCCC
Confidence 3456688999999999999874
No 278
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=43.52 E-value=13 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.8
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|..||.|..+||.+.
T Consensus 242 gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred CCCcCcChhhccccCCCCC
Confidence 4578999999999999876
No 279
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=42.46 E-value=8.6 Score=40.40 Aligned_cols=20 Identities=20% Similarity=0.605 Sum_probs=16.3
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..+.|+.||.|..+||+-..
T Consensus 21 ~~~~C~~Cg~C~~~CP~~~~ 40 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTYQL 40 (407)
T ss_pred HHHhCccCCCccccCCcccc
Confidence 34679999999999997543
No 280
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=41.42 E-value=10 Score=40.98 Aligned_cols=20 Identities=20% Similarity=0.763 Sum_probs=16.9
Q ss_pred ccccccccchhhhhcccccc
Q psy3876 68 SLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
..+.|+.||.|..+||+...
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~ 150 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKV 150 (486)
T ss_pred CchhcccCccccccCCCCcc
Confidence 44689999999999998754
No 281
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=38.71 E-value=13 Score=41.42 Aligned_cols=23 Identities=17% Similarity=0.673 Sum_probs=20.1
Q ss_pred cccccccccccccchhhh--hcccc
Q psy3876 63 KKVEISLTDCLACSGCIT--SAESV 85 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~--~Cp~~ 85 (477)
.++.++.++|++||.|+. .||..
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~ 567 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAI 567 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCc
Confidence 466889999999999999 99953
No 282
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=37.43 E-value=60 Score=32.15 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=36.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHH
Q psy3876 129 GAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDR 176 (477)
Q Consensus 129 ~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~ 176 (477)
++. +.+.++...+..++|+.|++.++||+........++..++++.
T Consensus 92 GEP--~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~ 137 (260)
T COG1180 92 GEP--TLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDA 137 (260)
T ss_pred Ccc--hhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCe
Confidence 776 4566788999999999999999999999887776555555543
No 283
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=37.37 E-value=13 Score=40.90 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=21.7
Q ss_pred ccccccccccccc------chhhhhcccccccc
Q psy3876 63 KKVEISLTDCLAC------SGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~C------g~Cv~~Cp~~ai~~ 89 (477)
.++....++|+.| +.|+.+||.+++..
T Consensus 497 ~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~ 529 (564)
T PRK12771 497 EEARQEAARCLSCGNCFECDNCYGACPQDAIIK 529 (564)
T ss_pred hhhhhhcccCcccccccccchhhhhCChhheee
Confidence 3456778889888 79999999998764
No 284
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.01 E-value=33 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCc
Q psy3876 140 VAKLCGFFKRLGVD 153 (477)
Q Consensus 140 ~~~l~~~Lk~lGf~ 153 (477)
+.+|..+++++||+
T Consensus 49 ~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 49 IEKIIEAIEKAGYE 62 (62)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCcC
Confidence 57999999999985
No 285
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=32.91 E-value=1.1e+02 Score=30.87 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=43.0
Q ss_pred cEEEEEecccchhhhhhhcC--CCHHHHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHHHHh
Q psy3876 114 KTIVLSLAIQPVLSLGAKFA--LSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRF 177 (477)
Q Consensus 114 ~~~vvsisP~~~~sl~~~f~--l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~~~~ 177 (477)
..+|+|+.|+.+.-|..... +. +..+=...|.++|+++++-..|..++.-+ ++++|++.+
T Consensus 31 ~~~V~tF~phP~~~~~~~~~~~l~---~~~~k~~~l~~~Gvd~~~~~~F~~~~a~l-s~e~Fi~~~ 92 (288)
T TIGR00083 31 PPAVLLFEPHPSEQFNWLTAPALT---PLEDKARQLQIKGVEQLLVVVFDEEFANL-SALQFIDQL 92 (288)
T ss_pred CEEEEEeCCChHHHhCccCCCCCC---CHHHHHHHHHHcCCCEEEEeCCCHHHHcC-CHHHHHHHH
Confidence 57899999987776643211 22 24566778899999999999998776544 347788764
No 286
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=32.02 E-value=14 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.4
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
-....|+.||.|..+||+-..
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~ 26 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRA 26 (388)
T ss_pred HHHHhcCCCCcccCcCCCccc
Confidence 345689999999999997654
No 287
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.36 E-value=98 Score=31.61 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.8
Q ss_pred EEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccchh
Q psy3876 118 LSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHC 163 (477)
Q Consensus 118 vsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad 163 (477)
|.+|+ |+... ++ .+...+|...+|+.|...++|++..+-
T Consensus 133 VvlsG----SlP~g--~~-~d~y~~li~~~~~~g~~vilD~Sg~~L 171 (310)
T COG1105 133 VVLSG----SLPPG--VP-PDAYAELIRILRQQGAKVILDTSGEAL 171 (310)
T ss_pred EEEeC----CCCCC--CC-HHHHHHHHHHHHhcCCeEEEECChHHH
Confidence 55688 66664 33 345789999999999999999996653
No 288
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=29.21 E-value=24 Score=36.26 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.9
Q ss_pred ccccccccchhhhhcccccccccC
Q psy3876 68 SLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+...|..||.|+.+||. +|....
T Consensus 3 ~~~~c~~Cg~C~a~cp~-~i~~~~ 25 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY-AITERD 25 (332)
T ss_pred cCcccccchhhHhhCCc-eEEEec
Confidence 44579999999999999 776654
No 289
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=28.01 E-value=2.8e+02 Score=25.36 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=42.9
Q ss_pred cccccc-cccchhhhhcccccc--cccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHH
Q psy3876 67 ISLTDC-LACSGCITSAESVLI--TQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKL 143 (477)
Q Consensus 67 I~~~~C-i~Cg~Cv~~Cp~~ai--~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l 143 (477)
+....| ..|..|-........ ...+.+++.+.+.... .....+.+++ ++.+ +.+ + ...+
T Consensus 21 ~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~---------~~~~~i~~sG------GEPl-l~~-~-l~~l 82 (191)
T TIGR02495 21 IFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ---------GLIDGVVITG------GEPT-LQA-G-LPDF 82 (191)
T ss_pred EEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc---------CCCCeEEEEC------Cccc-CcH-h-HHHH
Confidence 445578 678888663211111 1223334444333221 1122455666 7764 222 2 5688
Q ss_pred HHHHHHcCCcEEEECccc
Q psy3876 144 CGFFKRLGVDLVLDVGIA 161 (477)
Q Consensus 144 ~~~Lk~lGf~~V~Dt~~~ 161 (477)
+..+++.|+...+.|+..
T Consensus 83 i~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 83 LRKVRELGFEVKLDTNGS 100 (191)
T ss_pred HHHHHHCCCeEEEEeCCC
Confidence 888999999988988875
No 290
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=27.71 E-value=24 Score=34.47 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=21.0
Q ss_pred ccccc-cccccchhhhhcccccccccC
Q psy3876 66 EISLT-DCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~-~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
-|... -|++||.|..+||+.||.-.+
T Consensus 185 ll~qg~~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 185 LLEQGLPCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred eecCCCcccCchhhhccCCccCCcccC
Confidence 34555 799999999999999987643
No 291
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=27.14 E-value=1.6e+02 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=28.9
Q ss_pred EEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccch
Q psy3876 117 VLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAH 162 (477)
Q Consensus 117 vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~a 162 (477)
.+++++ +|.+ ...+....+...+|+.|++..++|+...
T Consensus 73 ~V~~sG------GEPl--l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 73 GVTASG------GEAI--LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred eEEEeC------ccHh--cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 355666 7774 3445567899999999999999998764
No 292
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.40 E-value=2.9e+02 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEECccchhh
Q psy3876 140 VAKLCGFFKRLGVDLVLDVGIAHCF 164 (477)
Q Consensus 140 ~~~l~~~Lk~lGf~~V~Dt~~~ad~ 164 (477)
+......||++||+.||+..-..+-
T Consensus 101 ~~~~~~~l~~~G~~~vf~~~~~~~~ 125 (137)
T PRK02261 101 FEEVEKKFKEMGFDRVFPPGTDPEE 125 (137)
T ss_pred hHHHHHHHHHcCCCEEECcCCCHHH
Confidence 5778889999999999997654443
No 293
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=25.36 E-value=22 Score=36.71 Aligned_cols=19 Identities=0% Similarity=0.076 Sum_probs=16.1
Q ss_pred ccccchhhhhccccccccc
Q psy3876 72 CLACSGCITSAESVLITQQ 90 (477)
Q Consensus 72 Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
|..||.|+.+||++||+.+
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~ 201 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPR 201 (341)
T ss_pred hcCCCceEeeCchhhceec
Confidence 5567899999999999863
No 294
>PF02236 Viral_DNA_bi: Viral DNA-binding protein, all alpha domain; InterPro: IPR003176 This domain represents the N-terminal domain of the viral DNA-binding protein, a multi functional protein involved in DNA replication and transcription control.; GO: 0003677 DNA binding, 0006260 DNA replication, 0006351 transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ADU_A 1ADV_B 2WB0_X 2WAZ_X 1ANV_A.
Probab=24.71 E-value=67 Score=26.41 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=29.1
Q ss_pred cChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCc
Q psy3876 188 ECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSH 236 (477)
Q Consensus 188 ~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~ 236 (477)
.|-+|++ +.++. +-...|+-||=..++||++-.+..+.-|+.|.+
T Consensus 40 i~~~~l~---~~k~~-~~LTFSS~KSf~~~mGRfL~~~v~~~agl~~~~ 84 (86)
T PF02236_consen 40 ICQTWLN---EEKRG-LQLTFSSQKSFTHMMGRFLAAFVYKYAGLAPKN 84 (86)
T ss_dssp HHHHHHH---HHHTT----SS--HHHHHHHHHHHHHHHHHHHHT---TT
T ss_pred HHHHHHH---hcCcC-CCcceechHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4555554 55555 456899999999999999999998888887753
No 295
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.15 E-value=3.8e+02 Score=26.37 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCH--H-H-HHHHHHHHHHHcCCcEEEECccchhhhHHH
Q psy3876 93 EEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSH--E-Q-VVAKLCGFFKRLGVDLVLDVGIAHCFSLVE 168 (477)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~--~-~-~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e 168 (477)
.|-.++.+.+.+ .+..+++|++..... ....+... + - ....|..+|++.+|+.|+|.+---...+.+
T Consensus 12 ~egr~la~~L~~-------~g~~v~~Svat~~g~--~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~ 82 (248)
T PRK08057 12 SEARALARALAA-------AGVDIVLSLAGRTGG--PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA 82 (248)
T ss_pred HHHHHHHHHHHh-------CCCeEEEEEccCCCC--cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence 355555555543 256788888875333 11111110 0 0 257899999999999999998755555666
Q ss_pred HHHHHHHHhhcCCCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHH
Q psy3876 169 LENEFLDRFLSGGGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVM 218 (477)
Q Consensus 169 ~~~e~~~~~~~~~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~ 218 (477)
.+.+..++. +.|+|-=-=|.|. ++ .-+++..|.|-.++.
T Consensus 83 ~a~~ac~~~---~ipyiR~eR~~~~-------~~-~~~~~~~v~s~~~a~ 121 (248)
T PRK08057 83 NAAAACRAL---GIPYLRLERPSWL-------PQ-PGDRWIEVDDIEEAA 121 (248)
T ss_pred HHHHHHHHh---CCcEEEEeCCCcC-------CC-CCCCEEEECCHHHHH
Confidence 666666654 5676643334441 11 124556666755543
No 296
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=21.54 E-value=20 Score=38.46 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=24.2
Q ss_pred ccccccccc--cchhhhhcccccccccChHHHHHHHHHhh
Q psy3876 66 EISLTDCLA--CSGCITSAESVLITQQSHEEVMKVIRENN 103 (477)
Q Consensus 66 ~I~~~~Ci~--Cg~Cv~~Cp~~ai~~~s~~~~~~~l~~~~ 103 (477)
.....+|+- ||-|.-+||..---.| -++..|+.+.
T Consensus 408 ~lg~~ecieedCG~CsyVCPSki~l~q---~iR~~l~~~~ 444 (447)
T TIGR01936 408 RLGALEVDEEDFALCTFVDPSKYEYGS---IVRESLDRIE 444 (447)
T ss_pred HCCCcccCccccccCceECCCCchHHH---HHHHHHHHHH
Confidence 366788998 9999999998753332 3455555553
No 297
>KOG1611|consensus
Probab=21.18 E-value=24 Score=34.40 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=11.0
Q ss_pred CCcccccChhHHH
Q psy3876 182 GPLFTSECPGWVC 194 (477)
Q Consensus 182 ~p~itS~CP~~V~ 194 (477)
.-+++|-|||||+
T Consensus 193 ~ilv~sihPGwV~ 205 (249)
T KOG1611|consen 193 HILVVSIHPGWVQ 205 (249)
T ss_pred cEEEEEecCCeEE
Confidence 3577999999998
No 298
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=21.17 E-value=17 Score=38.96 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=18.1
Q ss_pred cccccccc--cchhhhhccccc
Q psy3876 67 ISLTDCLA--CSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~--Cg~Cv~~Cp~~a 86 (477)
....+|+. ||-|.-+||+.-
T Consensus 410 ~~~~~C~EedCG~CsyVCPski 431 (448)
T PRK05352 410 LGALELDEEDLALCTFVCPGKY 431 (448)
T ss_pred cCchhcCccccCCCccCCCCCc
Confidence 77789999 999999999875
No 299
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=20.46 E-value=99 Score=30.59 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=32.5
Q ss_pred EEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEEC--ccchhhhHHHHHHHHHHHhhcCCCCccccc
Q psy3876 118 LSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDV--GIAHCFSLVELENEFLDRFLSGGGPLFTSE 188 (477)
Q Consensus 118 vsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt--~~~ad~~~~e~~~e~~~~~~~~~~p~itS~ 188 (477)
..|.|...+..-..| +. ...+-.+|.. +|+||+|. ++-+...+++ |..+. +.|+|||-
T Consensus 94 ~~InP~c~V~~~~~f-~t----~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~----~c~~~---ki~vIss~ 153 (263)
T COG1179 94 KQINPECEVTAINDF-IT----EENLEDLLSK-GFDYVIDAIDSVRAKVALIA----YCRRN---KIPVISSM 153 (263)
T ss_pred HhhCCCceEeehHhh-hC----HhHHHHHhcC-CCCEEEEchhhhHHHHHHHH----HHHHc---CCCEEeec
Confidence 345565555445554 22 3444444544 99999998 3444444433 33332 67999985
Done!