Query psy3876
Match_columns 477
No_of_seqs 256 out of 1941
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lx4_A Fe-hydrogenase; HYDA, H 100.0 8E-100 3E-104 785.9 32.4 360 94-469 27-451 (457)
2 3c8y_A Iron hydrogenase 1; dit 100.0 9.5E-96 3E-100 792.8 27.8 422 19-465 141-574 (574)
3 1hfe_L Protein (Fe-only hydrog 100.0 2.6E-83 9E-88 671.2 28.2 395 3-437 8-418 (421)
4 1q16_B Respiratory nitrate red 100.0 6.8E-32 2.3E-36 284.9 -13.2 146 113-285 289-449 (512)
5 1hfe_S Protein (Fe-only hydrog 99.8 3.3E-20 1.1E-24 159.9 1.4 75 396-470 13-99 (123)
6 2ivf_B Ethylbenzene dehydrogen 98.0 7.7E-06 2.6E-10 82.9 6.2 86 66-151 205-321 (352)
7 1ti6_B Pyrogallol hydroxytrans 97.8 2.4E-07 8.3E-12 91.0 -6.8 28 143-170 185-213 (274)
8 1kqf_B FDH-N beta S, formate d 97.8 6.1E-06 2.1E-10 81.8 2.1 94 69-166 157-276 (294)
9 1bc6_A 7-Fe ferredoxin; electr 97.8 2.6E-05 8.9E-10 60.9 5.1 26 66-91 33-58 (77)
10 3eun_A Ferredoxin; electron tr 97.7 2.6E-05 8.9E-10 61.8 3.9 49 22-91 5-62 (82)
11 1rgv_A Ferredoxin; electron tr 97.6 4.6E-05 1.6E-09 60.0 4.7 60 22-102 5-75 (80)
12 2fgo_A Ferredoxin; allochromat 97.6 6.1E-05 2.1E-09 59.5 4.9 48 23-91 6-62 (82)
13 1h98_A Ferredoxin; electron tr 97.5 6E-05 2E-09 59.1 3.3 49 22-91 5-58 (78)
14 7fd1_A FD1, protein (7-Fe ferr 97.5 5.3E-05 1.8E-09 63.1 3.1 50 21-91 4-58 (106)
15 3i9v_3 NADH-quinone oxidoreduc 97.4 5.1E-05 1.7E-09 84.9 3.1 62 19-91 175-239 (783)
16 2fdn_A Ferredoxin; electron tr 97.4 8.5E-05 2.9E-09 53.9 3.2 24 66-89 31-54 (55)
17 2zvs_A Uncharacterized ferredo 97.4 0.00012 4.2E-09 58.3 4.0 59 23-102 6-76 (85)
18 1xer_A Ferredoxin; electron tr 97.3 8.6E-05 2.9E-09 61.2 2.9 59 20-90 40-101 (103)
19 3i9v_9 NADH-quinone oxidoreduc 97.3 0.00012 4E-09 66.6 3.7 64 22-91 50-117 (182)
20 2v2k_A Ferredoxin; iron, trans 97.2 0.00013 4.4E-09 60.5 2.9 49 22-91 5-58 (105)
21 1f2g_A Ferredoxin II; electron 97.2 0.00021 7.1E-09 52.2 3.2 47 23-89 6-57 (58)
22 1dax_A Ferredoxin I; electron 97.2 0.00016 5.4E-09 54.1 2.3 52 21-90 7-62 (64)
23 1dwl_A Ferredoxin I; electron 97.1 0.00052 1.8E-08 49.9 4.5 23 67-89 36-58 (59)
24 1jnr_B Adenylylsulfate reducta 97.0 0.00029 1E-08 62.7 3.0 47 27-91 20-66 (150)
25 1rof_A Ferredoxin; electron tr 97.0 0.00037 1.3E-08 50.9 2.6 21 69-89 38-58 (60)
26 1jb0_C Photosystem I iron-sulf 96.9 0.0003 1E-08 54.8 1.9 24 67-90 42-65 (80)
27 3gyx_B Adenylylsulfate reducta 96.9 0.00045 1.5E-08 62.5 3.1 47 27-91 19-65 (166)
28 1iqz_A Ferredoxin; iron-sulfer 96.9 0.0004 1.4E-08 54.6 2.3 61 21-91 7-70 (81)
29 2c42_A Pyruvate-ferredoxin oxi 96.7 0.00093 3.2E-08 78.0 4.7 66 20-91 683-765 (1231)
30 3mm5_B Sulfite reductase, diss 96.5 0.00084 2.9E-08 68.4 2.2 45 26-89 214-258 (366)
31 3or1_B Sulfite reductase beta; 96.3 0.0013 4.3E-08 67.6 1.9 48 26-89 225-275 (386)
32 3j16_B RLI1P; ribosome recycli 96.2 0.00062 2.1E-08 73.9 -0.6 52 26-91 23-74 (608)
33 1sj1_A Ferredoxin; thermostabi 96.2 0.0016 5.5E-08 48.4 1.6 53 21-89 7-63 (66)
34 3mm5_A Sulfite reductase, diss 96.2 0.0019 6.6E-08 66.8 2.7 43 25-88 260-302 (418)
35 2vpz_B NRFC protein; oxidoredu 95.9 0.0051 1.8E-07 56.9 4.0 49 21-89 54-107 (195)
36 2ivf_B Ethylbenzene dehydrogen 95.7 0.0039 1.3E-07 63.1 2.5 50 22-90 148-202 (352)
37 1q16_B Respiratory nitrate red 95.7 0.0042 1.5E-07 65.6 2.8 51 21-90 180-235 (512)
38 3bk7_A ABC transporter ATP-bin 95.6 0.0022 7.5E-08 69.6 0.2 54 22-89 31-86 (607)
39 1ti6_B Pyrogallol hydroxytrans 95.6 0.0052 1.8E-07 60.0 2.8 26 64-89 91-116 (274)
40 1rgv_A Ferredoxin; electron tr 95.3 0.0055 1.9E-07 47.8 1.7 24 67-90 3-26 (80)
41 3eun_A Ferredoxin; electron tr 95.3 0.0054 1.9E-07 48.1 1.6 25 66-90 2-26 (82)
42 2fgo_A Ferredoxin; allochromat 95.2 0.0063 2.1E-07 47.7 1.7 24 67-90 3-26 (82)
43 2zvs_A Uncharacterized ferredo 95.2 0.0056 1.9E-07 48.4 1.4 24 67-90 3-26 (85)
44 1dax_A Ferredoxin I; electron 95.2 0.0063 2.2E-07 45.1 1.4 24 65-89 4-27 (64)
45 1gte_A Dihydropyrimidine dehyd 95.1 0.0063 2.2E-07 70.0 2.0 55 20-91 948-1006(1025)
46 1kqf_B FDH-N beta S, formate d 95.1 0.0083 2.8E-07 59.1 2.4 27 63-89 124-150 (294)
47 3or1_A Sulfite reductase alpha 94.9 0.01 3.4E-07 61.6 2.6 40 27-87 279-318 (437)
48 1xer_A Ferredoxin; electron tr 94.9 0.0076 2.6E-07 49.2 1.3 26 64-89 37-62 (103)
49 2fdn_A Ferredoxin; electron tr 94.8 0.011 3.7E-07 42.5 1.8 22 69-90 5-26 (55)
50 1jb0_C Photosystem I iron-sulf 94.8 0.0081 2.8E-07 46.4 1.1 24 66-89 4-27 (80)
51 1iqz_A Ferredoxin; iron-sulfer 94.6 0.0099 3.4E-07 46.4 1.4 23 65-88 4-26 (81)
52 1f2g_A Ferredoxin II; electron 94.4 0.013 4.5E-07 42.3 1.5 22 65-88 2-23 (58)
53 1dwl_A Ferredoxin I; electron 94.0 0.019 6.4E-07 41.3 1.6 23 65-88 2-24 (59)
54 1sj1_A Ferredoxin; thermostabi 94.0 0.017 5.7E-07 42.6 1.4 23 65-88 4-26 (66)
55 1h0h_B Formate dehydrogenase ( 93.9 0.03 1E-06 52.5 3.3 30 68-97 133-171 (214)
56 1rof_A Ferredoxin; electron tr 93.8 0.018 6.3E-07 41.5 1.2 23 65-88 3-25 (60)
57 1bc6_A 7-Fe ferredoxin; electr 93.7 0.018 6.3E-07 44.3 1.1 24 66-89 2-27 (77)
58 2gmh_A Electron transfer flavo 93.6 0.023 7.8E-07 61.2 2.1 46 27-89 523-570 (584)
59 1h98_A Ferredoxin; electron tr 93.2 0.026 8.9E-07 43.6 1.3 25 66-90 2-28 (78)
60 2pa8_D DNA-directed RNA polyme 93.2 0.032 1.1E-06 54.1 2.2 47 23-90 174-220 (265)
61 7fd1_A FD1, protein (7-Fe ferr 93.0 0.028 9.6E-07 46.2 1.3 25 66-90 2-28 (106)
62 2vpz_B NRFC protein; oxidoredu 92.8 0.059 2E-06 49.7 3.2 49 19-91 84-144 (195)
63 1h0h_B Formate dehydrogenase ( 92.7 0.035 1.2E-06 52.0 1.6 28 63-90 99-128 (214)
64 3i9v_9 NADH-quinone oxidoreduc 92.7 0.034 1.2E-06 50.0 1.4 23 67-89 48-70 (182)
65 2v2k_A Ferredoxin; iron, trans 92.2 0.039 1.3E-06 45.2 1.1 24 66-89 2-27 (105)
66 3gyx_B Adenylylsulfate reducta 91.7 0.052 1.8E-06 48.8 1.5 25 65-89 2-31 (166)
67 1jnr_B Adenylylsulfate reducta 91.2 0.064 2.2E-06 47.3 1.5 25 65-89 3-32 (150)
68 1hfe_L Protein (Fe-only hydrog 91.1 0.064 2.2E-06 55.4 1.6 27 64-90 27-53 (421)
69 3cf4_A Acetyl-COA decarboxylas 90.9 0.018 6.2E-07 64.3 -3.0 58 21-90 413-473 (807)
70 2wdq_B Succinate dehydrogenase 87.2 0.25 8.7E-06 46.6 2.4 22 67-88 201-222 (238)
71 2c42_A Pyruvate-ferredoxin oxi 86.3 0.2 7E-06 58.4 1.4 24 66-89 682-705 (1231)
72 1kf6_B Fumarate reductase iron 85.4 0.34 1.2E-05 45.8 2.3 20 67-86 199-218 (243)
73 1kf6_B Fumarate reductase iron 83.1 0.29 9.8E-06 46.3 0.6 22 67-88 143-164 (243)
74 2wdq_B Succinate dehydrogenase 81.2 0.38 1.3E-05 45.3 0.7 23 66-88 143-165 (238)
75 3c8y_A Iron hydrogenase 1; dit 80.5 0.4 1.4E-05 51.4 0.7 27 63-89 138-168 (574)
76 2bs2_B Quinol-fumarate reducta 79.6 0.38 1.3E-05 45.4 0.1 22 67-88 146-167 (241)
77 2h88_B Succinate dehydrogenase 78.9 0.5 1.7E-05 45.0 0.7 21 67-87 153-173 (252)
78 1gte_A Dihydropyrimidine dehyd 77.4 0.62 2.1E-05 53.4 1.0 28 63-90 944-974 (1025)
79 2h88_B Succinate dehydrogenase 76.9 1.1 3.6E-05 42.7 2.4 19 68-86 211-229 (252)
80 2bs2_B Quinol-fumarate reducta 74.6 1.3 4.4E-05 41.7 2.2 20 67-86 203-222 (241)
81 3i9v_3 NADH-quinone oxidoreduc 72.6 1.1 3.9E-05 49.7 1.5 25 64-88 173-201 (783)
82 3vr8_B Iron-sulfur subunit of 56.7 2.4 8.1E-05 41.2 0.1 19 69-87 179-197 (282)
83 3vr8_B Iron-sulfur subunit of 51.9 5 0.00017 38.9 1.5 19 68-86 235-253 (282)
84 3cf4_A Acetyl-COA decarboxylas 50.6 3 0.0001 46.4 -0.3 20 67-86 412-431 (807)
85 3or1_B Sulfite reductase beta; 47.1 6.4 0.00022 39.9 1.5 24 66-89 212-238 (386)
86 3mm5_B Sulfite reductase, diss 46.5 3.3 0.00011 41.6 -0.7 26 65-90 200-228 (366)
87 1wi9_A Protein C20ORF116 homol 27.4 66 0.0023 24.4 3.9 32 127-158 26-57 (72)
88 2hm3_A Nematocyst outer WALL a 27.2 17 0.00058 22.1 0.5 9 394-402 7-15 (31)
89 3kwl_A Uncharacterized protein 25.8 2.1E+02 0.0071 29.8 9.0 64 138-202 268-340 (514)
90 3mm5_A Sulfite reductase, diss 25.0 11 0.00036 38.7 -1.2 16 75-90 260-275 (418)
91 2pa8_D DNA-directed RNA polyme 22.6 26 0.00088 33.3 1.1 18 73-90 174-191 (265)
92 3iwl_A Copper transport protei 22.5 1.7E+02 0.0059 20.4 5.6 16 140-155 48-63 (68)
93 3mu7_A XAIP-II, xylanase and a 22.1 2.5E+02 0.0086 26.7 8.0 86 94-191 55-160 (273)
No 1
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=7.8e-100 Score=785.89 Aligned_cols=360 Identities=31% Similarity=0.496 Sum_probs=326.3
Q ss_pred HHHHHHHHhhhccccCCCCC-----cEEEEEecccchhhhhhhcCCCHHH-HHHHHHHHHHHcCCcEEEECccchhhhHH
Q psy3876 94 EVMKVIRENNAHKASSNENT-----KTIVLSLAIQPVLSLGAKFALSHEQ-VVAKLCGFFKRLGVDLVLDVGIAHCFSLV 167 (477)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~~~-----~~~vvsisP~~~~sl~~~f~l~~~~-~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~ 167 (477)
++.++++.|++ ++ +.+||++|||+|+||+++||++++. ++++|+.+||+|||++||||++|||++++
T Consensus 27 ~~~~v~~aL~~-------~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlti~ 99 (457)
T 3lx4_A 27 HVQQALAELAK-------PKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIM 99 (457)
T ss_dssp HHHHHHHHHHS-------CTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHHHH
T ss_pred hHHHHHHHHhC-------cCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 77788888763 23 7999999999999999999998765 58999999999999999999999999999
Q ss_pred HHHHHHHHHhh--------c-CCCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEE
Q psy3876 168 ELENEFLDRFL--------S-GGGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIY 238 (477)
Q Consensus 168 e~~~e~~~~~~--------~-~~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~ 238 (477)
|++.||++|++ + .++|||||||||||+||||+||+ |+||||+++|||||+|+++|+||+++.|++|++|+
T Consensus 100 EEa~Ef~~r~~~~l~~~~~~~~~lPmiTScCPgWV~yiEk~yPe-Llp~LSt~kSPqqm~G~liK~y~a~~~gi~p~~i~ 178 (457)
T 3lx4_A 100 EEGSELLHRLTEHLEAHPHSDEPLPMFTSCCPGWIAMLEKSYPD-LIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPKDMV 178 (457)
T ss_dssp HHHHHHHHHHHHHHCC-----CCSSEECCCCHHHHHHHHHHCGG-GGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHHhhhccccccCCCCceEecCCHHHHHHHHHhCcc-cccccCCCCCHHHHHHHHHHHHHHHhcCCCcccEE
Confidence 99999999983 2 26899999999999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEccccchhhhhcccccc-cccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCc
Q psy3876 239 HVTLMPCYDKKLEASRADFYN-EELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGS 317 (477)
Q Consensus 239 ~V~I~PC~aKK~Ea~r~~~~~-~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~s 317 (477)
|||||||+|||+||.|+++.. ...+.++||+||||+||.+||++.+| ++.++++.++|.+++..+++ +++||.|
T Consensus 179 vV~ImPC~AKK~EA~R~e~~~~~~~g~~dVD~VLTtrEL~~mik~~gI--d~~~l~~~~~D~p~g~~sga---G~iFg~s 253 (457)
T 3lx4_A 179 MVSIMPCTRKQSEADRDWFCVDADPTLRQLDHVITTVELGNIFKERGI--NLAELPEGEWDNPMGVGSGA---GVLFGTT 253 (457)
T ss_dssp EEEEESCSSHHHHHTCTTCBCC---CCBSSCEEEEHHHHHHHHHHTTC--CGGGSCCCCCCCTTSSSSSC---SCCSSBC
T ss_pred EEEEEcccchHHHhcCcccccccccCCccccEEeeHHHHHHHHHHcCC--ChhhCCcccccccccccCCC---ceecCCc
Confidence 999999999999999998853 12346799999999999999999999 99999999999999877665 4589999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcceeeccCCC-cEEEEEe-C--------------------------------------
Q psy3876 318 GGYAHNVLSHAIRQLCPGESPVVEFKPLRNPD-IREATFT-C-------------------------------------- 357 (477)
Q Consensus 318 GG~~e~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~-~-------------------------------------- 357 (477)
|||+|||+|++++.++|.+++.++|+.+||.| ++++++. .
T Consensus 254 GGV~EAv~r~a~~~~~g~~~~~~~~~~vrg~~g~kea~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (457)
T 3lx4_A 254 GGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAWDGGAGF 333 (457)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCCCCEECTTCTTEEEEEEEECCCTTSHHHHHHHHCCC-----------CCSCCCSCEEE
T ss_pred ccHHHHHHHHHHHHhhCCCCccccceeecCCCCceEEEEEeccccccchhhhhhhhhhhhhccccccccccccccccccc
Confidence 99999999999999999999999999999954 9988764 1
Q ss_pred ------CceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCcccCCCCCChHHHHHHHHHHHh---hC
Q psy3876 358 ------GDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILC---DL 428 (477)
Q Consensus 358 ------g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~~~~~~~~~~~~~~r~~~~~~---~~ 428 (477)
|...+|+|+||||+|++++|++|++|+.+|||||||||||||||||||+++... ..+.+|++.+|. ..
T Consensus 334 ~~~~~~~g~~l~vav~~G~~n~~~ll~~~k~G~~~y~fVEvMACPgGCi~GgGQp~~~~~---~~~~~r~~~ly~~d~~~ 410 (457)
T 3lx4_A 334 TSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDK---AITQKRQAALYNLDEKS 410 (457)
T ss_dssp CCTTCCCEEEEEEEEEESHHHHHHHHHHHHHTSSCCSEEEEESSTTCGGGCTTSCCCSCT---THHHHHHHTSSCHHHHT
T ss_pred ccccCCCCeEEEEEEEcCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCccccccccH---HHHHHHHHHHHHHhhcC
Confidence 567899999999999999999999999999999999999999999999997432 245578888887 57
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeeccccCC
Q psy3876 429 AKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKN 469 (477)
Q Consensus 429 ~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~~~~~ 469 (477)
+++.++|||.+++||++||++|+++++|+||||+|+++++.
T Consensus 411 ~~r~s~eNp~v~~lY~~~l~~p~s~~ah~lLHT~y~~~~~~ 451 (457)
T 3lx4_A 411 TLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVE 451 (457)
T ss_dssp SBCCGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCCCTTCC-
T ss_pred CccCCCcCHHHHHHHHHHhCCCCcHHHHHhcCccccccCcc
Confidence 89999999999999999999999999999999999998764
No 2
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=100.00 E-value=9.5e-96 Score=792.79 Aligned_cols=422 Identities=25% Similarity=0.413 Sum_probs=373.5
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccChHHH
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQSHEEV 95 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s~~~~ 95 (477)
..+..+||.|. ++|+.. ++.++|.+.++|..+.+.+.. ...|+.++|+.||+|+.+||++||...+ ++
T Consensus 141 ~~d~~kCi~Cg~Cv~~CP~~--~~~~ai~~~~~g~~~~i~~~~-----~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~--~~ 211 (574)
T 3c8y_A 141 TVDRTKCLLCGRCVNACGKN--TETYAMKFLNKNGKTIIGAED-----EKCFDDTNCLLCGQCIIACPVAALSEKS--HM 211 (574)
T ss_dssp EEEGGGCCCCCHHHHHHHHH--HSCCCSEEEEETTEEEEESGG-----GCCGGGSSCCCCCHHHHHCSSTTEEECC--CH
T ss_pred eeCcccCcCCCCccchhCch--hcCCceeeccCCccceecccc-----cceechhhCCcchhHHHhhccCCccccc--cH
Confidence 44678888887 789873 344568888888777765432 2358899999999999999999998876 45
Q ss_pred HHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHH-HHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHH
Q psy3876 96 MKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHE-QVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFL 174 (477)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~-~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~ 174 (477)
.++++.+.. +++.+|+++||++++|+++.|+++++ .+.++|+.+||++||++|+||++++|++++|++.||+
T Consensus 212 ~~v~~~l~~-------~~~~~v~~~ap~v~~s~ge~f~~~~g~~~~~~l~~alk~lGf~~v~dt~~~adl~~~ee~~e~l 284 (574)
T 3c8y_A 212 DRVKNALNA-------PEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELV 284 (574)
T ss_dssp HHHHHHHHC-------TTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-------ccceeEEeeCCceeeechhhhccccCchHHHHHHHHHHHcCCCEEeecccchhHHHHHHHHHHH
Confidence 566666652 36789999999999999999998654 4689999999999999999999999999999999999
Q ss_pred HHhhcC-CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccchhhhh
Q psy3876 175 DRFLSG-GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEAS 253 (477)
Q Consensus 175 ~~~~~~-~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~ 253 (477)
++++++ .+|||||||||||+|+||+||+ |+||||+++|||||+|+++|+++++++|++|++|+|||||||+|||+||.
T Consensus 285 d~~~~~~~~p~itScCP~wv~~~e~~~p~-l~~~ls~~~SP~~~~g~~~K~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~ 363 (574)
T 3c8y_A 285 QRIENNGPFPMFTSCCPGWVRQAENYYPE-LLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEAD 363 (574)
T ss_dssp HHHHHTCSCCEECCCCHHHHHHHHHHCGG-GGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHT
T ss_pred HHHhhcCCceEEEecCHHHHHHHHHhchh-hcCcCccCCCHHHHHHHHHHhhhHhhcCCCcCcEEEEEEeCCCccccccc
Confidence 998653 6799999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHHHHHHHHHHHHhC
Q psy3876 254 RADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLC 333 (477)
Q Consensus 254 r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~e~v~~~~~~~~~ 333 (477)
|+++.. .+.++||+||||+||.+||++.+| ++.++++.+||.+++..+++ +.+||.||||+++++|++++.++
T Consensus 364 r~~~~~--~~~~~vD~vlT~~El~~~~~~~~i--~~~~l~~~~~d~~~~~~s~~---g~~f~~sGGv~ea~~~~~~~~~~ 436 (574)
T 3c8y_A 364 RPQMEK--DGLRDIDAVITTRELAKMIKDAKI--PFAKLEDSEADPAMGEYSGA---GAIFGATGGVMEAALRSAKDFAE 436 (574)
T ss_dssp CTTSEE--TTEESCSEEEEHHHHHHHHHHTTC--CGGGCCCCCCCGGGTCCCHH---HHTTTSTTHHHHHHHHHHHHHHH
T ss_pred cccccc--CCCCccCEEEcHHHHHHHHHHcCC--CcccCCcccccccccccCcC---cccccCcccHHHHHHHHHHHHhc
Confidence 998743 235799999999999999999999 99999999999988876654 45899999999999999999999
Q ss_pred CCCCCCcceeeccC-CCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCcccCCCC
Q psy3876 334 PGESPVVEFKPLRN-PDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKV 411 (477)
Q Consensus 334 ~~~~~~~~~~~~~~-~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~~~~~~ 411 (477)
|.+++.++|+.+|| .|++|+++. +|. .+++|+|+|++|++++|++|++|+.+|||||+|||||||||||||++....
T Consensus 437 ~~~~~~~~~~~~r~~~~~~e~~~~~~~~-~~~~~~~~G~~n~~~~l~~~~~g~~~~~fiEvmaCpgGCi~G~gq~~~~~~ 515 (574)
T 3c8y_A 437 NAELEDIEYKQVRGLNGIKEAEVEINNN-KYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPK 515 (574)
T ss_dssp TCCCSCCCCGGGCSSCSEEEEEEEETTE-EEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHH
T ss_pred CCCCcccceeeecCCCCcEEEEEEeCCe-EEEEEEEeCHHHHHHHHHHHHcCCCCCCEEEECCCCCCccCCCCcccCccc
Confidence 99999999999999 679999998 776 489999999999999999999999999999999999999999999986431
Q ss_pred C--ChHHHHHHHHHHHh---hCCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeecc
Q psy3876 412 A--SPKETALELETILC---DLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHN 465 (477)
Q Consensus 412 ~--~~~~~~~r~~~~~~---~~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~ 465 (477)
. ..+.+.+|++.+|+ ..+++.+++||.+++||++||++|+++++|+||||+||+
T Consensus 516 ~~~~~~~~~~r~~~ly~~d~~~~~~~~~~n~~~~~ly~~~l~~p~~~~~~~llht~y~~ 574 (574)
T 3c8y_A 516 DLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 574 (574)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred ccchHHHHHHHHHHHHHhhccCCccCcccCHHHHHHHHHHhcCCCCHHHHHHhcccCcC
Confidence 0 01357789999995 588999999999999999999999999999999999984
No 3
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=100.00 E-value=2.6e-83 Score=671.20 Aligned_cols=395 Identities=27% Similarity=0.390 Sum_probs=321.2
Q ss_pred CCCCcccccCCCCCCC-----cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCccccccccccc-cccccc
Q psy3876 3 SSRFSGVLQLTDLDDF-----IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEI-SLTDCL 73 (477)
Q Consensus 3 ~~~fs~~~~~~~ldD~-----i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I-~~~~Ci 73 (477)
..+|.+.....++|+. ..+..+|+.|. ++|+..+ |.+.+ | ....| +.++|+
T Consensus 8 ~~~~~~~~~~~~~d~~~~m~i~~d~~kCi~Cg~C~~~CP~~a------i~~~~-~-------------~~~~i~~~~~C~ 67 (421)
T 1hfe_L 8 RIEYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCPTAA------IFGEM-G-------------EPHSIPHIEACI 67 (421)
T ss_dssp TEEECCCCCCTTCCGGGCCSEEECTTTCCCCCHHHHHCTTCC------CBCCT-T-------------SCCBCCCGGGCC
T ss_pred ccccCCCCCCCCcCCCCCceEEECcccCCCccHHHHhcCcCc------eeccc-c-------------cceeecChhhCC
Confidence 3456655544444422 34678888777 7899864 43221 1 11235 788999
Q ss_pred ccchhhhhcccccccc-cChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHH-HHHHHHHHHHcC
Q psy3876 74 ACSGCITSAESVLITQ-QSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQV-VAKLCGFFKRLG 151 (477)
Q Consensus 74 ~Cg~Cv~~Cp~~ai~~-~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~-~~~l~~~Lk~lG 151 (477)
.||+|+.+||++||.. ++ +...+.+.++. +.+.+|+++||++++|++++|+++++++ .++|+.+||++|
T Consensus 68 ~Cg~C~~~CP~~Ai~~~~~--~~~~v~~~l~d-------~~~~vv~~~ap~v~~slge~fg~~~g~~~~~kl~~aLk~lG 138 (421)
T 1hfe_L 68 NCGQCLTHCPENAIYEAQS--WVPEVEKKLKD-------GKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLG 138 (421)
T ss_dssp CCCTTGGGCTTCCEEESCC--CHHHHHHHHHC-------TTCEEEEEECGGGGGTGGGGGTCCTTCCCHHHHHHHHHHHT
T ss_pred chhhHHHhhCcCCcccccc--cchhhhhhhcc-------cccceeeecccceeehhHHHhCCCcccccHHHHHHHHHhhc
Confidence 9999999999999998 66 23333343432 3467899999999999999999876665 899999999999
Q ss_pred CcEEEECccchhhhHHHHHHHHHHHhhcC---CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHH
Q psy3876 152 VDLVLDVGIAHCFSLVELENEFLDRFLSG---GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAE 228 (477)
Q Consensus 152 f~~V~Dt~~~ad~~~~e~~~e~~~~~~~~---~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~ 228 (477)
|++|+||++++|++++|++.||+++++.. ..|+|||||||||+|+|++||+ ++||||+++|||+|+|.++|.++++
T Consensus 139 f~~v~dT~~~ad~~~~ee~~e~~~~~k~~~~~~~p~~Ts~CP~wv~~~e~~~p~-ll~~ls~~~sP~~i~~~lik~~~~~ 217 (421)
T 1hfe_L 139 FAHCWDTEFTADVTIWEEGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPE-LLPHFSTCKSPIGMNGALAKTYGAE 217 (421)
T ss_dssp CSEECCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSEECCCCHHHHHHHHHHCGG-GGGGBCSBCCHHHHHHHHHTTHHHH
T ss_pred CCccccccccchHHHHHHHHHHHHHHhhcCcccCcccccCCHHHHHHHHHhhHH-HHhhccCCCCCceeehhhhchhhhh
Confidence 99999999999999999999999998643 6799999999999999999999 8999999999999999999999999
Q ss_pred hhCCCCCcEEEEEEEccccchhhhhcccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccc
Q psy3876 229 KLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHR 308 (477)
Q Consensus 229 ~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~ 308 (477)
+.|++|++|++|+||||+|||.|+.|+++.. .+.++||+||||+||.+||++.+| ++.++++.+||.+++..+++
T Consensus 218 ~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~--~~~~~vD~vlT~~El~~~~~~~gi--~~~~l~~~~~d~~~~~~s~~- 292 (421)
T 1hfe_L 218 RMKYDPKQVYTVSIMPCIAKKYEGLRPELKS--SGMRDIDATLTTRELAYMIKKAGI--DFAKLPDGKRDSLMGESTGG- 292 (421)
T ss_dssp HHTCCGGGEEEEEEESCSHHHHHHTCTTCCT--TSSCSCCEEEEHHHHHHHHHHTTC--CGGGCCCCCCCTTTCCCCHH-
T ss_pred hcCCChhhEEEEEEeCCcchHHHhcCccccc--cCCCCCCeeeeHHHHHHHHHHcCC--CcccCCcccccccccccCCC-
Confidence 9999999999999999999999999998743 235789999999999999999999 99999999999998876654
Q ss_pred cccccccCchhHHHHHHHHHHHHhCCCCCCCcceeeccC-CCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCC
Q psy3876 309 MLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRN-PDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLP 386 (477)
Q Consensus 309 ~~~~~~~~sGG~~e~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~ 386 (477)
+++||.||||+++++|++++.++|.+++.++|+.+|| .|++|+++. +|. .+++++|+||+|++++|++|++|+.+
T Consensus 293 --g~~fg~sGGv~ea~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e~~~~~~~~-~~~~~~~~G~~n~~~~l~~~k~g~~~ 369 (421)
T 1hfe_L 293 --ATIFGVTGGVMEAALRFAYEAVTGKKPDSWDFKAVRGLDGIKEATVNVGGT-DVKVAVVHGAKRFKQVCDDVKAGKSP 369 (421)
T ss_dssp --HHGGGSTTHHHHHHHHHHHHHHHSSCCSCSCCGGGCSSCSEEEEEEEETTE-EEEEEEEESGGGHHHHHHHHHTTCCC
T ss_pred --ccccCCCcCHHHHHHHHHHHHhcCCCCccccceeeccCCCceEEEEecCCe-EEEEEEEcCHHHHHHHHHHHHcCCCC
Confidence 3479999999999999999999999999999999999 789999998 664 68999999999999999999999999
Q ss_pred CcEEEecCCCccccCCCCcccCCCCCChHHHHHHHHHHHhhCCCCCCCCcH
Q psy3876 387 YDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILCDLAKSEPRENA 437 (477)
Q Consensus 387 ~~fiEvmACpgGCi~Gggq~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~n~ 437 (477)
|||||+|||||||||||||++.+.. .+.+.+|++.+|...+.+.+++|.
T Consensus 370 ~~fiEvmaCpgGCi~G~gq~~~~~~--~~~~~~r~~~~y~~~~~~~~~~~~ 418 (421)
T 1hfe_L 370 YHFIEYMACPGGCVCGGGQPVMPGV--LEAMDRTTTRLYAGLKKRLAMASA 418 (421)
T ss_dssp CSEEEEESSTTSGGGCTTSCCCTTS--SCCC--------------------
T ss_pred CcEEEECCCCCCCcCCCCccCCCCC--HHHHHHHHHHHHHHhhhhcChhhc
Confidence 9999999999999999999987432 246789999999988888887764
No 4
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=99.95 E-value=6.8e-32 Score=284.86 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=124.7
Q ss_pred CcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCc-EEEECccchhhhHHHHHHHHHHHhhcCCCCccccc---
Q psy3876 113 TKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVD-LVLDVGIAHCFSLVELENEFLDRFLSGGGPLFTSE--- 188 (477)
Q Consensus 113 ~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~-~V~Dt~~~ad~~~~e~~~e~~~~~~~~~~p~itS~--- 188 (477)
++.+|++++| +|+++|+ .+|+++||++||+ +|+||+++| ++++++.||++++..++.|++|||
T Consensus 289 ~k~v~~~~~p----~~~~~f~-------~kvi~ALk~lGf~~~v~eta~~A--~i~ee~~E~~~~l~~~p~~~ttscv~y 355 (512)
T 1q16_B 289 EKDLYQRQLD----VFLDPND-------PKVIEQAIKDGIPLSVIEAAQQS--PVYKMAMEWKLALPLHPEYRTLPMVWY 355 (512)
T ss_dssp GGGHHHHHHT----TEECTTC-------HHHHHHHHHTTCCHHHHHHHTTC--HHHHHHTTSCCCEESCGGGSSCCSEEE
T ss_pred ccceEEEecc----cccCccc-------HHHHHHHHHcCCCceEeeccccc--HHHHHHHHHHHHhhcCCcCCcccCccc
Confidence 4667777666 8999987 6999999999999 999999999 578888998877654456889999
Q ss_pred ChhH---HHHHH-Hh--cCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccchhhhhccccccc-c
Q psy3876 189 CPGW---VCYAE-KS--HGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNE-E 261 (477)
Q Consensus 189 CP~~---V~yiE-k~--~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~-~ 261 (477)
||+| |+|+| ++ ||+ |+||||+++|||+++|+++|++. |++|++| +||+||.|+++... .
T Consensus 356 cP~~~~~v~~ie~~~~~~P~-l~~~ls~~~SPm~~~a~l~K~~~-------~~~v~~v------~kk~ea~R~~~~~~~~ 421 (512)
T 1q16_B 356 VPPLSPIQSAADAGELGSNG-ILPDVESLRIPVQYLANLLTAGD-------TKPVLRA------LKRMLAMRHYKRAETV 421 (512)
T ss_dssp ECCCCCBCCCSSSCCCBTTB-TSCCGGGBSSCHHHHHHHHSTTC-------HHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHhcccCCcc-ccccccccchHHHHHHHHhhhcC-------CccEEEE------echhhhccHhhhhccC
Confidence 9999 99999 99 999 89999999999999999999975 4565543 99999999987421 1
Q ss_pred cCCCCc----cEEeCHHHHHHHHHhcCC
Q psy3876 262 LGYRDV----DCVITAVELEVLLANELA 285 (477)
Q Consensus 262 ~~~~~V----D~VLT~~El~~~l~~~~i 285 (477)
.+..|+ |+|||++||.+|++..+|
T Consensus 422 ~~~~d~~~~~d~~lT~~e~~~m~r~~~i 449 (512)
T 1q16_B 422 DGKVDTRALEEVGLTEAQAQEMYRYLAI 449 (512)
T ss_dssp TCCCCCHHHHHTTCCHHHHHHHHHHHTT
T ss_pred CCcccchhHhhcCCCHHHHHHHHHHhCc
Confidence 345678 999999999999999888
No 5
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D*
Probab=99.77 E-value=3.3e-20 Score=159.87 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=52.3
Q ss_pred CccccCCCCcccCCCCCC---------hHHHHHHHHHHH---hhCCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeee
Q psy3876 396 PSGCLNGGAQIRNEKVAS---------PKETALELETIL---CDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSY 463 (477)
Q Consensus 396 pgGCi~Gggq~~~~~~~~---------~~~~~~r~~~~~---~~~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y 463 (477)
||||||||||+....... .+.+.+|++.+| ...+++.|+|||.|++||++||++|+++++|+||||+|
T Consensus 13 PgGCInGGGQp~~~~~~~~~~~~~~~~~~~~~~R~e~LY~~D~~~~iR~sheNp~V~~LY~e~Lg~P~s~kAheLLHT~Y 92 (123)
T 1hfe_S 13 KVACVTTGAALIGIRMTGKAVAAVKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHW 92 (123)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCC
T ss_pred cceeeccCCccCCCcccchhhhcccccHHHHHHHHHHHHHHhhcCcccCCCcCHHHHHHHHHHHcCCCcHHHHHHhCccc
Confidence 999999999998754322 467889999999 57899999999999999999999999999999999999
Q ss_pred ccccCCC
Q psy3876 464 HNIPKNN 470 (477)
Q Consensus 464 ~~~~~~~ 470 (477)
+++++..
T Consensus 93 ~~r~k~~ 99 (123)
T 1hfe_S 93 FDKSKGV 99 (123)
T ss_dssp CCCTHHH
T ss_pred ccccccc
Confidence 9997653
No 6
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=97.95 E-value=7.7e-06 Score=82.94 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=56.8
Q ss_pred ccccccccccc---------hhhhhcccccccccChH----HHHHHHHHhhhccc----cCCCCCcEEEEEecccc----
Q psy3876 66 EISLTDCLACS---------GCITSAESVLITQQSHE----EVMKVIRENNAHKA----SSNENTKTIVLSLAIQP---- 124 (477)
Q Consensus 66 ~I~~~~Ci~Cg---------~Cv~~Cp~~ai~~~s~~----~~~~~l~~~~~~~~----~~~~~~~~~vvsisP~~---- 124 (477)
.+..++|+.|+ .|+.+||++||.....+ .+.+++++.+.... ....+...+++.++|.+
T Consensus 205 ~~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d~~s~v~kl~~~~~~~~~~~~~~~t~P~v~yv~~~ap~~~~~~ 284 (352)
T 2ivf_B 205 SQTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLDDTTSHVHKLVKKWKVALPLHAEYGTGPNIYYVPPMGARGFGED 284 (352)
T ss_dssp TTEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETTCTTSHHHHHHTTSCCCEETTGGGSSCCCEEEECCCCCEEECTT
T ss_pred cccccccCCCcchhhcCCCChHHHhcCccceeccccchhHHHHHHHHHHhhhccccchhhCCCCeEEEEeCCCccccccc
Confidence 35568899996 99999999999764322 34444433210000 00134556667778877
Q ss_pred ----------hhhhhhhcCCCHHHHHHHHHHHHHHcC
Q psy3876 125 ----------VLSLGAKFALSHEQVVAKLCGFFKRLG 151 (477)
Q Consensus 125 ----------~~sl~~~f~l~~~~~~~~l~~~Lk~lG 151 (477)
|+.|++.||-....+.++|.++++++-
T Consensus 285 ~~~~~~~~~p~~~l~~~fg~~~~~~~~~~~~~~~~~~ 321 (352)
T 2ivf_B 285 GEITDKTRIPLDVLEGLFGPEVKRVLAVLHTERENMR 321 (352)
T ss_dssp SSEEEEESSCHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 899999999444457899999997653
No 7
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=97.85 E-value=2.4e-07 Score=91.00 Aligned_cols=28 Identities=11% Similarity=-0.117 Sum_probs=23.2
Q ss_pred HHHHHHHcCCcEEE-ECccchhhhHHHHH
Q psy3876 143 LCGFFKRLGVDLVL-DVGIAHCFSLVELE 170 (477)
Q Consensus 143 l~~~Lk~lGf~~V~-Dt~~~ad~~~~e~~ 170 (477)
.+.+++.+||++|| ||++++|++++|++
T Consensus 185 ~v~y~~~~~f~~~~l~~~~~a~~~~~~~~ 213 (274)
T 1ti6_B 185 RVYYKNLYRFEKNYVTAGILVQGDCFEGA 213 (274)
T ss_dssp SEEEESTHHHHCEEEEEEEEETTEECTTC
T ss_pred eEEEEcCCCceeEeeccccccccccccCC
Confidence 34457789999999 99999999987764
No 8
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=97.78 E-value=6.1e-06 Score=81.81 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=58.9
Q ss_pred cccccccc---------hhhhhcccccccccChHHHHHH----HHHhhhcc-----ccCC--CCCcEEEEEe----cccc
Q psy3876 69 LTDCLACS---------GCITSAESVLITQQSHEEVMKV----IRENNAHK-----ASSN--ENTKTIVLSL----AIQP 124 (477)
Q Consensus 69 ~~~Ci~Cg---------~Cv~~Cp~~ai~~~s~~~~~~~----l~~~~~~~-----~~~~--~~~~~~vvsi----sP~~ 124 (477)
...|+.|+ .|+.+||++||.....+++.+. ++.+++.. .-++ ..+..++..+ +|
T Consensus 157 ~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~l~~~~~~~a~~y~~~~~gg~~v~~~~~~~~~p-- 234 (294)
T 1kqf_B 157 VYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEGVGGTHVMYVLHHADQP-- 234 (294)
T ss_dssp EECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHHHTTCTTCEEECCGGGTCBSEEEEETTTTCG--
T ss_pred eeeCCCccchhhcCccHHHHHhCCcCcEEEecHHHHHHHHHHHHHHHHhcCCcccceeccccCCCceEEEEEccCCCc--
Confidence 45799998 8999999999877654454332 23333200 0000 0123455554 55
Q ss_pred hhhhhhhcCCCH--HHHHHHHHHHHHHcCCcEEEECccchhhhH
Q psy3876 125 VLSLGAKFALSH--EQVVAKLCGFFKRLGVDLVLDVGIAHCFSL 166 (477)
Q Consensus 125 ~~sl~~~f~l~~--~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~ 166 (477)
++..+|+-.+ ..++.++..+||.+||..|+++++++.+..
T Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 276 (294)
T 1kqf_B 235 --ELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY 276 (294)
T ss_dssp --GGTTTCCSSCCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554211 235789999999999999999999988753
No 9
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=97.77 E-value=2.6e-05 Score=60.94 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=22.9
Q ss_pred ccccccccccchhhhhcccccccccC
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++.+.|+.||.|+.+||++||....
T Consensus 33 ~~~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (77)
T 1bc6_A 33 YIDPDVCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp EECTTTCCSCCSHHHHSGGGSSEETT
T ss_pred EECcccCcCccCCHhhcCccceEecC
Confidence 47788999999999999999997654
No 10
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.68 E-value=2.6e-05 Score=61.84 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=36.0
Q ss_pred Ccccccc---ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc------hhhhhcccccccccC
Q psy3876 22 SQECIKP---IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS------GCITSAESVLITQQS 91 (477)
Q Consensus 22 ~~~CI~c---~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg------~Cv~~Cp~~ai~~~s 91 (477)
.++|+.| +++||..+ |.+.+ +...|+.+.|+.|| .|+.+||++||....
T Consensus 5 ~~~C~~C~~C~~~CP~~a------i~~~~---------------~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 3eun_A 5 TDECINCDVCEPECPNGA------ISQGD---------------ETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDP 62 (82)
T ss_dssp CTTCCCCCTTGGGCTTCC------EEECS---------------SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECG
T ss_pred CCCCcCccchHHHCChhh------eEcCC---------------CceEEchhhcCCCCCCCCccHHHHhCCccceEEcC
Confidence 4556554 58899864 65542 12347788999999 999999999998765
No 11
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.63 E-value=4.6e-05 Score=59.98 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=39.4
Q ss_pred Ccccccc---ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc------hhhhhcccccccccC-
Q psy3876 22 SQECIKP---IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS------GCITSAESVLITQQS- 91 (477)
Q Consensus 22 ~~~CI~c---~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg------~Cv~~Cp~~ai~~~s- 91 (477)
.++|+.| +++||..+ |.+.+ +...++.+.|+.|| .|+.+||++||....
T Consensus 5 ~~~C~~C~~C~~~CP~~a------i~~~~---------------~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (80)
T 1rgv_A 5 NDDCTACDACVEECPNEA------ITPGD---------------PIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPD 63 (80)
T ss_dssp CSCCCCCCTTTTTCTTCC------EECCS---------------SSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGG
T ss_pred CCCCcChhhHHHHcChhc------cCcCC---------------CeeEEcchhCcCCCCcCCccHHHHhcCcccEEecCC
Confidence 3455555 47888764 65442 12347788999999 999999999997654
Q ss_pred h-HHHHHHHHHh
Q psy3876 92 H-EEVMKVIREN 102 (477)
Q Consensus 92 ~-~~~~~~l~~~ 102 (477)
. ....++++.+
T Consensus 64 ~~~~~~~~~~~~ 75 (80)
T 1rgv_A 64 YRETREELQEKY 75 (80)
T ss_dssp GCCCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 1 2344444443
No 12
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.59 E-value=6.1e-05 Score=59.53 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=34.8
Q ss_pred ccccc---cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc------hhhhhcccccccccC
Q psy3876 23 QECIK---PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS------GCITSAESVLITQQS 91 (477)
Q Consensus 23 ~~CI~---c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg------~Cv~~Cp~~ai~~~s 91 (477)
.+|+. |+++||..+ |.+.++ ...++.+.|+.|| .|+.+||++||....
T Consensus 6 ~~C~~C~~C~~~CP~~a------i~~~~~---------------~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 6 DDCINCDVCEPECPNGA------ISQGEE---------------IYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp TTCCCCCTTGGGCTTCC------EEECSS---------------SEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred CCCCChhhHHHHCChhc------cCCCCC---------------eEEEEchhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 45554 558899764 665431 1347788999999 999999999997653
No 13
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=97.47 E-value=6e-05 Score=59.06 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=35.8
Q ss_pred Cccccc-----cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 22 SQECIK-----PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 22 ~~~CI~-----c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..+|+. |+++||..+ |.+.+ +...++.+.|+.||.|+.+||++||....
T Consensus 5 ~~~C~~c~C~~C~~~CP~~a------i~~~~---------------~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 5 CEPCIGVKDQSCVEVCPVEC------IYDGG---------------DQFYIHPEECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp CGGGTTTCCCHHHHHCTTCC------EEECS---------------SSEEECTTTCCCCCTHHHHCTTCCEEEGG
T ss_pred chhCCCCCcChhhhhcCccc------eEcCC---------------CEEEECcccCCcHhHHHHhCCccceEecc
Confidence 355665 458999764 65542 12347788999999999999999997643
No 14
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=97.47 E-value=5.3e-05 Score=63.07 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCcccccc-----ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKP-----IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c-----~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+.++|+.| +++|+..+ |.+.+ +.+.|+.+.|+.||.|+.+||++||....
T Consensus 4 ~~~~C~~C~~~~C~~~CP~~a------i~~~~---------------~~~~i~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (106)
T 7fd1_A 4 VTDNCIKCKYTDCVEVCPVDC------FYEGP---------------NFLVIHPDECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp ECGGGTTTCCCHHHHHCTTCC------EEECS---------------SCEEECTTTCCCCCTTGGGCTTCCEEEGG
T ss_pred CccccCCccCcHHHHHcCccc------eEcCC---------------CcEEECcccCCChhhhHHhCCChhhhccc
Confidence 34566655 47888764 55542 22357788999999999999999997654
No 15
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=97.42 E-value=5.1e-05 Score=84.94 Aligned_cols=62 Identities=6% Similarity=-0.111 Sum_probs=47.8
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..+.++||.|. ++|++. ++...|.+.++|....+.... ...+|+.||+|+.+||++||+.+.
T Consensus 175 ~~d~~~CI~C~~Cv~~C~~~--~~~~~i~~~~~g~~~~i~~~~---------~~~~C~~CG~Cv~vCP~gAl~~~~ 239 (783)
T 3i9v_3 175 ILDRERCIHCKRCVRYFEEV--PGDEVLDFIERGVHTFIGTMD---------FGLPSGFSGNITDICPVGALLDLT 239 (783)
T ss_dssp EECTTTCCCCCHHHHHHHHT--TCCCCCEECSCTTSCCEECSS---------TTCCSTTTTTHHHHCSSSSEEEGG
T ss_pred EEchhhCCCccHHHHHhhhh--cCCceeeeecCCCccEEccCC---------CCCCCccchhHHhhcccCceeccc
Confidence 34788999888 789776 566778998888877665321 122799999999999999998765
No 16
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=97.41 E-value=8.5e-05 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.+.|+.||.|+.+||++||..
T Consensus 31 ~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 31 VIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp EECTTTCCCCCHHHHTCTTCCEEE
T ss_pred EeccccCcChhChHHHccccceec
Confidence 477889999999999999999863
No 17
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=97.37 E-value=0.00012 Score=58.27 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=38.9
Q ss_pred cccccc---ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc------hhhhhccc-ccccccC-
Q psy3876 23 QECIKP---IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS------GCITSAES-VLITQQS- 91 (477)
Q Consensus 23 ~~CI~c---~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg------~Cv~~Cp~-~ai~~~s- 91 (477)
.+|+.| +++||..+ |.+.+ +...++.+.|+.|| .|+.+||+ +||....
T Consensus 6 ~~C~~C~~C~~~CP~~a------i~~~~---------------~~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 6 KKCINCDMCEPECPNEA------ISMGD---------------HIYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp TTCCCCCTTTTTCTTCC------EECCS---------------SSCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred CcCcChhHHHHHCchhc------cCcCC---------------CceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 455554 57888764 65542 11346788999999 99999999 9997653
Q ss_pred -hHHHHHHHHHh
Q psy3876 92 -HEEVMKVIREN 102 (477)
Q Consensus 92 -~~~~~~~l~~~ 102 (477)
..+..++++.+
T Consensus 65 ~~~~~~~~~~~~ 76 (85)
T 2zvs_A 65 HVETEEQLWDKF 76 (85)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 22344444444
No 18
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=97.35 E-value=8.6e-05 Score=61.16 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+..+|+.|. ++|+..+ |.+.+++..... . .....++.+.|+.||.|+.+||++||...
T Consensus 40 id~~~C~~Cg~C~~~CP~~a------i~~~~~~~~~~~---~---~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 40 VDFDLCIADGSCINACPVNV------FQWYDTPGHPAS---E---KKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp EETTTCCCCCHHHHHCTTCC------CEEEECTTCSSC---S---EEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred EehhhCCChhhHHHHcCccC------eecccccCcccc---c---cceeecCcccccChhhHHHhccccceEec
Confidence 3557788776 7899754 555433211110 0 01234778899999999999999998753
No 19
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=97.32 E-value=0.00012 Score=66.60 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred Cccccccc---cccCCCCCCCCceEEEecCCCceeecCcc-cccccccccccccccccchhhhhcccccccccC
Q psy3876 22 SQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGR-EEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 22 ~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~-~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.++||.|. ++|+..+ |.+...+......... ........++.++|+.||.|+.+||++||....
T Consensus 50 ~~~Ci~C~~C~~~CP~~a------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 50 LEKCIGCSLCAAACPAYA------IYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp CBSCCCCCHHHHHCTTCC------EEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred CccCcccccchhhCCccc------EEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecC
Confidence 46788776 7899864 5544322111100000 011123457889999999999999999997653
No 20
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=97.24 E-value=0.00013 Score=60.45 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=35.5
Q ss_pred Ccccccc-----ccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 22 SQECIKP-----IPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 22 ~~~CI~c-----~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
..+|+.| +++||..+ |.+.++ ...++.+.|+.||.|+.+||++||....
T Consensus 5 ~~~C~~C~c~~C~~~CP~~a------i~~~~~---------------~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 58 (105)
T 2v2k_A 5 AEPCVDVKDKACIEECPVDC------IYEGAR---------------MLYIHPDECVDCGACEPVCPVEAIYYED 58 (105)
T ss_dssp CGGGTTTCCCHHHHHCTTCC------EEECSS---------------CEEECTTTCCCCCCSGGGCTTCCEEEGG
T ss_pred cccCCCCCcChhhhhcCccc------cCcCCC---------------cEEEeCCcCcchhhHHHhCCccCEEecC
Confidence 3556644 48899764 655431 2347788999999999999999997643
No 21
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=97.19 E-value=0.00021 Score=52.23 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccc--cccccccchhhhhcccccccc
Q psy3876 23 QECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEIS--LTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 23 ~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~--~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+|+.|. +.||. . |.+.++|.. ..++ .+.|+.||.|+.+||++||..
T Consensus 6 ~~C~~C~~C~~~CP~-~------~~~~~~~~~-------------~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 6 DDCMACEACVEICPD-V------FEMNEEGDK-------------AVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp TTCCCCCHHHHHCTT-T------EEECSSSSS-------------EEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred CcCccchHHHHhCCc-c------EEECCCCcE-------------EEeCCCccchHHHHHHHhhCChhhEEe
Confidence 5666665 78886 3 555433321 1234 678999999999999999864
No 22
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=97.16 E-value=0.00016 Score=54.08 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=35.1
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecC-CCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDD-GAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~-G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.++|+.|. ++|| .+ |.+.++ |....+ .+..+.|+.||.|+.+||++||...
T Consensus 7 d~~~C~~Cg~C~~~CP-~~------~~~~~~~~~~~~~-----------~~~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 7 DQDECIACESCVEIAP-GA------FAMDPEIEKAYVK-----------DVEGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp CSTTCCSCCHHHHHCT-TT------EEECSSSSSEEEC-----------CGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred ccccCCCchHHHHhCC-cc------EeEcCCCCEEEEe-----------cCCCcchhHHHHHHHhCCHhhEeee
Confidence 456777776 7898 43 666543 221111 1346789999999999999999753
No 23
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=97.09 E-value=0.00052 Score=49.94 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=20.3
Q ss_pred cccccccccchhhhhcccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
++.+.|..||.|+.+||++||..
T Consensus 36 ~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred cChhhhhHHHHHHHhCCHhhEEc
Confidence 46778999999999999999864
No 24
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=97.02 E-value=0.00029 Score=62.67 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=34.3
Q ss_pred ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 27 KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.|+++|+..+ |.+.+++.. ...++.+.|+.||.|+.+||++||....
T Consensus 20 ~C~~~CP~~a------i~~~~~~~~------------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (150)
T 1jnr_B 20 ACEYICPNDL------MTLDKEKMK------------AYNREPDMCWECYSCVKMCPQGAIDVRG 66 (150)
T ss_dssp HHHHHCTTSC------EEEETTTTE------------EEESCGGGCCCCCHHHHHCTTCCEEECC
T ss_pred cchhhcCccC------eEEecCCce------------eeeeCcccCcCHhHHHHhCCccceEecC
Confidence 4456888754 766643211 1247778999999999999999998776
No 25
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.95 E-value=0.00037 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=19.2
Q ss_pred cccccccchhhhhcccccccc
Q psy3876 69 LTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+.|+.||.|+.+||++||..
T Consensus 38 ~~~c~~C~~C~~~CP~~Ai~~ 58 (60)
T 1rof_A 38 ETDLPCAKDAADSCPTGAISV 58 (60)
T ss_dssp SCCSTTHHHHHHHCTTCCEEC
T ss_pred hhhHHHHHHHHHhCCHhHEEE
Confidence 678999999999999999875
No 26
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=96.90 E-value=0.0003 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=20.9
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++.+.|+.||.|+.+||++||...
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTDFLSIR 65 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSSSCSEE
T ss_pred CCCCcCcCcCChhhhCCCCccEee
Confidence 466789999999999999998754
No 27
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.88 E-value=0.00045 Score=62.55 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=34.2
Q ss_pred ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 27 KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.|+++|+..+ |.+.+++.. ...++.++|+.||.|+.+||++||....
T Consensus 19 ~C~~~CP~~a------i~~~~~~~~------------~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 65 (166)
T 3gyx_B 19 ACMYICPNDL------MILDPEEMK------------AFNQEPEACWECYSCIKICPQGAITARP 65 (166)
T ss_dssp HHHHHCTTSC------EEEETTTTE------------EEESCGGGCCCCCHHHHHCSSCCEEECC
T ss_pred hhHHhCCccc------cEEecCCce------------eEecCcccCcccChHhHhCCccceEEec
Confidence 4446888764 766643311 1246778999999999999999998765
No 28
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=96.86 E-value=0.0004 Score=54.63 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=38.3
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
+..+|+.|+ .+||.. +.+.++|....+.... .....+..+.|..||.|+.+||++||....
T Consensus 7 d~~~CigCg~C~~~CP~~-------~~~~~~g~~~~~~~~~---~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~ 70 (81)
T 1iqz_A 7 DKETCIACGACGAAAPDI-------YDYDEDGIAYVTLDDN---QGIVEVPDILIDDMMDAFEGCPTDSIKVAD 70 (81)
T ss_dssp CTTTCCCCSHHHHHCTTT-------EEECTTSCEEETTTTT---SSCSCCCGGGHHHHHHHHHHCTTCCEEEES
T ss_pred ecccCcccChhhHhCchh-------eeeCCCCeEEEeccCc---cccCCCCHHHHHHHHHHHHhCCHhHEEEec
Confidence 567888776 788842 5554444322111100 011245677899999999999999997643
No 29
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=96.71 E-value=0.00093 Score=77.96 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=42.9
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEe----------cCCCceeecCccc--ccccccccccccccccchhhhhccc
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQ----------DDGAYIQETNGRE--EKLKKVEISLTDCLACSGCITSAES 84 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~----------~~G~~~~i~~~~~--~~~~~a~I~~~~Ci~Cg~Cv~~Cp~ 84 (477)
.+..+||.|. ++||..+ |.+. .+|+.+....+.. .......++.++|+.||.|+.+||+
T Consensus 683 ~d~~kCi~Cg~Cv~vCP~~A------I~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 683 WVPENCIQCNQCAFVCPHSA------ILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPP 756 (1231)
T ss_dssp ECTTTCCCCCHHHHHCSSCC------EEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSS
T ss_pred EeCccCCchhhHHHhCCccc------ccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCC
Confidence 3568888877 7899864 5542 1233322211110 0001346889999999999999999
Q ss_pred --ccccccC
Q psy3876 85 --VLITQQS 91 (477)
Q Consensus 85 --~ai~~~s 91 (477)
+||....
T Consensus 757 ~~~AI~~~~ 765 (1231)
T 2c42_A 757 KEKALVMQP 765 (1231)
T ss_dssp SSCSEEEEE
T ss_pred CccCeEEec
Confidence 9998776
No 30
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=96.50 E-value=0.00084 Score=68.42 Aligned_cols=45 Identities=11% Similarity=0.348 Sum_probs=35.1
Q ss_pred cccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 26 IKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 26 I~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
-.|+..||..+ |.+... .+++.|+.++|+.||.|+.+||++||..
T Consensus 214 ~~Cv~~CP~~A------I~~~~~-------------~~~~~id~~~C~~Cg~C~~~CP~~Ai~~ 258 (366)
T 3mm5_B 214 PSTVAACPTGA------LKPDMK-------------NKTIKVDVEKCMYCGNCYTMCPGMPLFD 258 (366)
T ss_dssp HHHHHTCTTCC------EEEETT-------------TTEEEECGGGCCCCCHHHHHCTTCCCCC
T ss_pred cchhccCCccc------eEecCC-------------CCeEEEehhhCCCcchHHHhCCHhhccc
Confidence 56678888875 666531 1456799999999999999999999854
No 31
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=96.26 E-value=0.0013 Score=67.58 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=35.4
Q ss_pred cccccccCCCCCCCCceEEEec---CCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 26 IKPIPIEKPSGPRTGAKIRIQD---DGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 26 I~c~r~c~~~~~~~~~~i~i~~---~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
-.|+.+||..+ |.+.. +|. +.+.+.|+.++|+.||.|+++||++||..
T Consensus 225 ~~cv~~CPt~A------I~~~~~~~~g~----------~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 225 PLAVAACPTAA------VKPITAEVNGQ----------KVKSVAINNDRCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp HHHHHHCTTCC------EEEEEEEETTE----------EEEEEEECTTTCCCCCHHHHHCTTCCCCC
T ss_pred hhhhhhCchhh------ccccccccCCc----------cccccccCCCcCCccccHHHhCcHhhCcC
Confidence 45678999876 65542 221 01346799999999999999999999865
No 32
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.00062 Score=73.90 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=38.7
Q ss_pred cccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccccC
Q psy3876 26 IKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQS 91 (477)
Q Consensus 26 I~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~s 91 (477)
.-|.+.||..- .|...|.+.. ..+++.|+++.||+||-||.-||+.||+..+
T Consensus 23 ~~c~~~cp~~~-~~~~~~~~~~-------------~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~n 74 (608)
T 3j16_B 23 QECKRSCPVVK-TGKLCIEVTP-------------TSKIAFISEILCIGCGICVKKCPFDAIQIIN 74 (608)
T ss_dssp SHHHHHCHHHH-HTCCSEEEET-------------TTTEEEECTTTCCCCCHHHHHCSSCCEEEEE
T ss_pred cchhhcCCCcc-CCceEEEEcC-------------CCCceEEehhhccccccccccCCccceEEec
Confidence 34557888753 3444454432 1367889999999999999999999998876
No 33
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=96.17 E-value=0.0016 Score=48.39 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCccccccccccccc-ccccccchhhhhcccccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISL-TDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~-~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+..+|+.|. +.|+. + |.+.++|....+.. .+.. ..|..||.|+.+||++||..
T Consensus 7 d~~~C~~C~~C~~~Cp~-~------~~~~~~~~~~~~~~---------~~~~~~~c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 7 DQDTCIGDAICASLCPD-V------FEMNDEGKAQPKVE---------VIEDEELYNCAKEAMEACPVSAITI 63 (66)
T ss_dssp CTTTCCCCCHHHHHCTT-T------EEECTTSCEEESCS---------CBCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcccCcCchHHHHhCCc-e------EEECCCCceeeccc---------CCCcHHHHHHHHHHHhhCCHhhEEE
Confidence 456777766 78885 3 66654442211110 0123 34889999999999999875
No 34
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=96.16 E-value=0.0019 Score=66.77 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=34.3
Q ss_pred ccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccc
Q psy3876 25 CIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 25 CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
|-.|+..||..+ |...+ +++.|+.+.|+.||.|+.+||+.++.
T Consensus 260 ~~~cv~~CPt~A------i~~~~---------------~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 260 ENEVVKLCPTGA------IKWDG---------------KELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp HHHTGGGCTTCC------EEECS---------------SCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred CccccccCCccc------cccCC---------------ceeEEChhhcCccChhHHhCcHhhcc
Confidence 357889999876 66542 34679999999999999999998754
No 35
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.89 E-value=0.0051 Score=56.93 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCccccc-----cccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 21 PSQECIK-----PIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 21 ~~~~CI~-----c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
....|+. |+++|+..+ |....+ +.+.++.+.|+.||.|+.+||++||..
T Consensus 54 ~~~~C~~C~~p~C~~~CP~gA------i~~~~~--------------g~~~id~~~CigC~~C~~~CP~~Ai~~ 107 (195)
T 2vpz_B 54 RPEQCLHCENPPCVPVCPTGA------SYQTKD--------------GLVLVDPKKCIACGACIAACPYDARYL 107 (195)
T ss_dssp EEEECCCCSSCTTTTTCSSSC------EEECTT--------------SCEEECTTTCCCCCHHHHHCTTCCCEE
T ss_pred CcccCcCccCcHHHHhcCCCc------eecccc--------------cceeecCCCCCCcChhHhhCCCCCeEE
Confidence 4456665 557788764 554422 234588899999999999999999875
No 36
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.71 E-value=0.0039 Score=63.07 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred Cccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 22 SQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 22 ~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+..|+.|. ++|+..+ |..... .+.+.++.++|+.||.|+.+||++||...
T Consensus 148 ~~~C~~C~~~~Cv~~CP~gA------i~~~~~-------------~g~v~id~~kCigCg~Cv~aCP~~Ai~~~ 202 (352)
T 2ivf_B 148 ARMCNHCTNPACLAACPTGA------IYKRED-------------NGIVLVDQERCKGHRHCVEACPYKAIYFN 202 (352)
T ss_dssp EECCCCCSSCHHHHHCTTCC------EEECTT-------------TCCEEECTTTCCCCCHHHHHCTTCCEEEE
T ss_pred CCCCcCcCCccccccCCCCc------eeecCC-------------CCeEEechhhcCCchHHHhhcCccceecc
Confidence 45666554 7888764 543321 13356788999999999999999998653
No 37
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=95.69 E-value=0.0042 Score=65.63 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=36.3
Q ss_pred CCccccccc-----cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIKPI-----PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~c~-----r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
....|+.|. ++|+..+ |.+... .+.+.|+.++|+.||.|+.+||++||...
T Consensus 180 ~~~~C~~C~~~~Cv~aCP~gA------I~~~~~-------------~g~v~id~~kCigCg~Cv~~CP~~AI~~~ 235 (512)
T 1q16_B 180 LPRLCEHCLNPACVATCPSGA------IYKREE-------------DGIVLIDQDKCRGWRMCITGCPYKKIYFN 235 (512)
T ss_dssp EEECCCCCSSCHHHHTCTTCC------EEEETT-------------TCCEEECTTTCCCCCCHHHHCTTCCEEEE
T ss_pred cCccCcCCCCchhhhhCCcCc------EEeecC-------------CCeEEECHHHCCCchHHHhhCCccceecc
Confidence 345565554 6788754 655321 13456888999999999999999999764
No 38
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.59 E-value=0.0022 Score=69.61 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=41.8
Q ss_pred Cccc--cccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 22 SQEC--IKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 22 ~~~C--I~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+| .-|.+.||... .|...|.+..+ .+++.|+++.|++||-|+..||..||..
T Consensus 31 p~~c~~~~c~~~cp~~~-~~~~~~~~~~~-------------~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 31 PDKCGHFLCERVCPVNR-MGGEAIIIDEE-------------NYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TTTSSSCHHHHHCHHHH-TTCCSEEEETT-------------TTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred CCCCChhhHhhhCCCCc-CCceEEEEcCC-------------CCcceeeecccCccccccCCCCcceEEE
Confidence 4777 67889999864 44444555532 2677899999999999999999999887
No 39
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=95.57 E-value=0.0052 Score=60.03 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=22.9
Q ss_pred ccccccccccccchhhhhcccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+.|+.++|++||.|+.+||++||..
T Consensus 91 ~v~id~~~CigC~~C~~~CP~~Ai~~ 116 (274)
T 1ti6_B 91 IVLIDPEKAKGKKELLDTCPYGVMYW 116 (274)
T ss_dssp CEEECTTTTTTCGGGGGGCSSCCCEE
T ss_pred cEEechhhccchHHHHhhCccCCeEE
Confidence 34688899999999999999999865
No 40
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.34 E-value=0.0055 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.2
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++.+.|++||.|+.+||++||...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~ 26 (80)
T 1rgv_A 3 YINDDCTACDACVEECPNEAITPG 26 (80)
T ss_dssp CCCSCCCCCCTTTTTCTTCCEECC
T ss_pred EeCCCCcChhhHHHHcChhccCcC
Confidence 567899999999999999998753
No 41
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=95.32 E-value=0.0054 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=21.7
Q ss_pred ccccccccccchhhhhccccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.++.+.|++||.|+.+||++||...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQG 26 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEEC
T ss_pred eEeCCCCcCccchHHHCChhheEcC
Confidence 3677899999999999999998753
No 42
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=95.23 E-value=0.0063 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.1
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++.+.|++||.|+.+||++||...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 2fgo_A 3 KITDDCINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CCCTTCCCCCTTGGGCTTCCEEEC
T ss_pred eeCCCCCChhhHHHHCChhccCCC
Confidence 567899999999999999998753
No 43
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=95.21 E-value=0.0056 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.1
Q ss_pred cccccccccchhhhhccccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
++.+.|++||.|+.+||++||...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~ 26 (85)
T 2zvs_A 3 LITKKCINCDMCEPECPNEAISMG 26 (85)
T ss_dssp EECTTCCCCCTTTTTCTTCCEECC
T ss_pred EeCCcCcChhHHHHHCchhccCcC
Confidence 567899999999999999998753
No 44
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=95.15 E-value=0.0063 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=20.4
Q ss_pred cccccccccccchhhhhcccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.|+.++|++||.|+.+|| +++..
T Consensus 4 ~~id~~~C~~Cg~C~~~CP-~~~~~ 27 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAP-GAFAM 27 (64)
T ss_dssp CEECSTTCCSCCHHHHHCT-TTEEE
T ss_pred EEEccccCCCchHHHHhCC-ccEeE
Confidence 4578889999999999999 77653
No 45
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.11 E-value=0.0063 Score=69.95 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=37.4
Q ss_pred CCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccc-ccccccC
Q psy3876 20 GPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAES-VLITQQS 91 (477)
Q Consensus 20 ~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~-~ai~~~s 91 (477)
.+.++|+.|. ++|+.. +.+.|.+.+++ .+..++ ++|+.||.|+.+||+ +||....
T Consensus 948 id~~~C~~Cg~C~~~CP~~---~~~ai~~~~~~-------------~~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~ 1006 (1025)
T 1gte_A 948 IDEEMCINCGKCYMTCNDS---GYQAIQFDPET-------------HLPTVT-DTCTGCTLCLSVCPIIDCIRMVS 1006 (1025)
T ss_dssp ECTTTCCCCCHHHHHHHHH---SCSCEEECTTT-------------CCEEEC-TTCCCCCHHHHHCSSTTTEEEEE
T ss_pred EEcccCcccCHHHHhcCcc---ccCCEEEeCCC-------------ceEEeC-ccCCChhHHHhhCCCCCCEEEec
Confidence 3557788777 789851 11236665421 122355 889999999999999 9998754
No 46
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=95.07 E-value=0.0083 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.3
Q ss_pred cccccccccccccchhhhhcccccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
+.+.++.+.|+.||.|+.+||++|+..
T Consensus 124 g~v~id~~~CigCg~C~~~CP~~ai~~ 150 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPFNIPRL 150 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTTCCCEE
T ss_pred cceEeCcccCCCcchhhhcCCCCCcEe
Confidence 345688899999999999999999875
No 47
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=94.90 E-value=0.01 Score=61.59 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=31.7
Q ss_pred ccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhcccccc
Q psy3876 27 KPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
.|+..||..+ |...+ ++..|+.++|+.||.|+++||+.|.
T Consensus 279 ~vv~~CPt~a------i~~~~---------------~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 279 EVVGLCPTGC------MTYES---------------GTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HTTTTCTTCC------EEEET---------------TEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhccCcHHh------eeecC---------------CEEEEccccCCchhhhHhhCcHhhc
Confidence 4667888875 66653 3456999999999999999999765
No 48
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.87 E-value=0.0076 Score=49.20 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.9
Q ss_pred ccccccccccccchhhhhcccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
++.++.+.|++||.|+.+||++|+..
T Consensus 37 ~~~id~~~C~~Cg~C~~~CP~~ai~~ 62 (103)
T 1xer_A 37 IVGVDFDLCIADGSCINACPVNVFQW 62 (103)
T ss_dssp SEEEETTTCCCCCHHHHHCTTCCCEE
T ss_pred eEEEehhhCCChhhHHHHcCccCeec
Confidence 45688899999999999999999864
No 49
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=94.78 E-value=0.011 Score=42.45 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.6
Q ss_pred cccccccchhhhhccccccccc
Q psy3876 69 LTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.|++||.|+.+||.+||...
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSG 26 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECC
T ss_pred cccCcChhhHHHHCCccccCcC
Confidence 7789999999999999998653
No 50
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=94.76 E-value=0.0081 Score=46.41 Aligned_cols=24 Identities=13% Similarity=0.537 Sum_probs=20.9
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.+.|++||.|+.+||++++..
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~ 27 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEM 27 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEE
T ss_pred cccCCcCcChhHHHHHCCcccccc
Confidence 466788999999999999999864
No 51
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=94.63 E-value=0.0099 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=19.6
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.|+.++|++||.|+.+|| .++.
T Consensus 4 v~vd~~~CigCg~C~~~CP-~~~~ 26 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAP-DIYD 26 (81)
T ss_dssp EEECTTTCCCCSHHHHHCT-TTEE
T ss_pred EEEecccCcccChhhHhCc-hhee
Confidence 4688899999999999999 5554
No 52
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=94.40 E-value=0.013 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.912 Sum_probs=18.6
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.|+ ++|++||.|+.+||+ ++.
T Consensus 2 v~id-~~C~~C~~C~~~CP~-~~~ 23 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPD-VFE 23 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTT-TEE
T ss_pred cEEC-CcCccchHHHHhCCc-cEE
Confidence 4578 999999999999998 443
No 53
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=94.02 E-value=0.019 Score=41.32 Aligned_cols=23 Identities=17% Similarity=0.715 Sum_probs=19.0
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.++.+.|++||.|+.+||. ++.
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~-~~~ 24 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPE-VFA 24 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTT-TEE
T ss_pred eEEChhhCcChhHHHHHCCH-Hhe
Confidence 35778899999999999995 554
No 54
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=94.01 E-value=0.017 Score=42.64 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=19.5
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.++.+.|++||.|+.+||. ++.
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~-~~~ 26 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPD-VFE 26 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTT-TEE
T ss_pred EEECcccCcCchHHHHhCCc-eEE
Confidence 45788899999999999995 654
No 55
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=93.93 E-value=0.03 Score=52.47 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=23.5
Q ss_pred cccccccc------c---hhhhhcccccccccChHHHHH
Q psy3876 68 SLTDCLAC------S---GCITSAESVLITQQSHEEVMK 97 (477)
Q Consensus 68 ~~~~Ci~C------g---~Cv~~Cp~~ai~~~s~~~~~~ 97 (477)
..++|+.| | .|+.+||++||......++..
T Consensus 133 ~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~~ 171 (214)
T 1h0h_B 133 QMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEA 171 (214)
T ss_dssp CEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHHH
T ss_pred ccCcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHHH
Confidence 45689999 5 899999999998776555543
No 56
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.78 E-value=0.018 Score=41.53 Aligned_cols=23 Identities=17% Similarity=0.577 Sum_probs=19.1
Q ss_pred cccccccccccchhhhhccccccc
Q psy3876 65 VEISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 65 a~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
+.++.+.|++||.|+.+||. ++.
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~-~~~ 25 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPD-VFQ 25 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTT-TBC
T ss_pred EEEchhhCCCChHHHHhCcH-HHe
Confidence 35788899999999999997 443
No 57
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=93.67 E-value=0.018 Score=44.34 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.2
Q ss_pred ccccccccc--cchhhhhcccccccc
Q psy3876 66 EISLTDCLA--CSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~--Cg~Cv~~Cp~~ai~~ 89 (477)
.|+.+.|++ ||.|+.+||++||..
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~ 27 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHE 27 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEE
T ss_pred EEeCccCCCCCcchhHHhcccccEEe
Confidence 467789999 999999999999865
No 58
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=93.63 E-value=0.023 Score=61.18 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=33.6
Q ss_pred ccccccCCCCCCCCceEEE-e-cCCCceeecCcccccccccccccccccccchhhhhcccccccc
Q psy3876 27 KPIPIEKPSGPRTGAKIRI-Q-DDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 27 ~c~r~c~~~~~~~~~~i~i-~-~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.|.+.||... +.+ . ++|.. .+..|+.+.||.||.|...||+++|.-
T Consensus 523 ~c~~~CPa~~------~~~~~~~~~~~-----------~~~~i~~~~Ci~C~~C~~~cp~~~i~~ 570 (584)
T 2gmh_A 523 PEQRFCPAGV------YEFVPLEQGDG-----------FRLQINAQNCVHCKTCDIKDPSQNINW 570 (584)
T ss_dssp THHHHCTTCC------EEEEECSSTTC-----------EEEEECGGGCCCCCHHHHHCTTCCEEE
T ss_pred hhhhcCChhh------EEEeecCCCCc-----------eEEEEeCCCCcCCCCchhhCCCCCcee
Confidence 4669999864 655 3 12110 145799999999999999999999853
No 59
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=93.24 E-value=0.026 Score=43.63 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=21.4
Q ss_pred ccccccccc--cchhhhhccccccccc
Q psy3876 66 EISLTDCLA--CSGCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~--Cg~Cv~~Cp~~ai~~~ 90 (477)
.|+.+.|++ ||.|+.+||++||...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~ 28 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDG 28 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred EEEchhCCCCCcChhhhhcCccceEcC
Confidence 367789999 9999999999998753
No 60
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=93.21 E-value=0.032 Score=54.09 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=35.0
Q ss_pred ccccccccccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 23 QECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 23 ~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
..|-+|.+.|+..+ |.+.+ +. .+.++..+|+.||.|+.+|| +|+...
T Consensus 174 ~~C~~C~~~CP~g~------I~id~-~~-------------~v~~d~~~C~~C~~C~~vCp-~aI~~~ 220 (265)
T 2pa8_D 174 ANCEKAVNVCPEGV------FELKD-GK-------------LSVKNELSCTLCEECLRYCN-GSIRIS 220 (265)
T ss_dssp SCCTTHHHHCTTCC------EEEET-TE-------------EEESCGGGCCCCCHHHHHHT-TSEEEE
T ss_pred hhHHHHHHhCcccC------eEecC-Ce-------------eEEeccccCCCchHHHHhCC-CceEEE
Confidence 67889999999764 77654 11 11245678999999999999 888754
No 61
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=93.04 E-value=0.028 Score=46.23 Aligned_cols=25 Identities=12% Similarity=0.436 Sum_probs=21.5
Q ss_pred ccccccccccc--hhhhhccccccccc
Q psy3876 66 EISLTDCLACS--GCITSAESVLITQQ 90 (477)
Q Consensus 66 ~I~~~~Ci~Cg--~Cv~~Cp~~ai~~~ 90 (477)
.++.+.|++|| .|+.+||++||...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~ 28 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEG 28 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred eECccccCCccCcHHHHHcCccceEcC
Confidence 36778999999 99999999998653
No 62
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=92.76 E-value=0.059 Score=49.70 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=35.7
Q ss_pred cCCCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccc---------hhhhhccccc
Q psy3876 19 IGPSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACS---------GCITSAESVL 86 (477)
Q Consensus 19 i~~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg---------~Cv~~Cp~~a 86 (477)
..+..+|+.|. .+|+..+ |.+..+. + .+.|+.|+ .|+.+||++|
T Consensus 84 ~id~~~CigC~~C~~~CP~~A------i~~~~~~-------------~-----~~kC~~C~~~~~~g~~p~Cv~~CP~~A 139 (195)
T 2vpz_B 84 LVDPKKCIACGACIAACPYDA------RYLHPAG-------------Y-----VSKCTFCAHRLEKGKVPACVETCPTYC 139 (195)
T ss_dssp EECTTTCCCCCHHHHHCTTCC------CEECTTS-------------S-----EECCCTTHHHHHTTCCCHHHHSCTTCC
T ss_pred eecCCCCCCcChhHhhCCCCC------eEECCCC-------------C-----CccCcCcchHHhCCCCchhHhhCCccc
Confidence 34667888776 7899865 6555321 0 46799999 5999999999
Q ss_pred ccccC
Q psy3876 87 ITQQS 91 (477)
Q Consensus 87 i~~~s 91 (477)
|....
T Consensus 140 i~~g~ 144 (195)
T 2vpz_B 140 RTFGD 144 (195)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98653
No 63
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=92.68 E-value=0.035 Score=52.01 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=23.9
Q ss_pred ccccccccccc--ccchhhhhccccccccc
Q psy3876 63 KKVEISLTDCL--ACSGCITSAESVLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci--~Cg~Cv~~Cp~~ai~~~ 90 (477)
+.+.|+.+.|+ .||.|+.+||++||...
T Consensus 99 g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~ 128 (214)
T 1h0h_B 99 GCVLFTPKTKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp CCEEECGGGGGCSCHHHHHHHCTTCCCEEC
T ss_pred CeEEEeHHHCccccccHHHHhcCCCCeEec
Confidence 34568889999 99999999999998754
No 64
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=92.68 E-value=0.034 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.1
Q ss_pred cccccccccchhhhhcccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.+.++|++||.|+.+||++|+..
T Consensus 48 ~d~~~Ci~C~~C~~~CP~~ai~~ 70 (182)
T 3i9v_9 48 NGLEKCIGCSLCAAACPAYAIYV 70 (182)
T ss_dssp TSCBSCCCCCHHHHHCTTCCEEE
T ss_pred CCCccCcccccchhhCCcccEEe
Confidence 45679999999999999999864
No 65
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=92.21 E-value=0.039 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.1
Q ss_pred cccccccccc--chhhhhcccccccc
Q psy3876 66 EISLTDCLAC--SGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~C--g~Cv~~Cp~~ai~~ 89 (477)
.|+.+.|++| |.|+.+||++||..
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~ 27 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYE 27 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEE
T ss_pred EEecccCCCCCcChhhhhcCccccCc
Confidence 4677899988 99999999999865
No 66
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=91.74 E-value=0.052 Score=48.77 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=22.2
Q ss_pred cccccccccccc-----hhhhhcccccccc
Q psy3876 65 VEISLTDCLACS-----GCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg-----~Cv~~Cp~~ai~~ 89 (477)
+.|+.++|++|| .|+.+||++||..
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~ 31 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPNDLMIL 31 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTTSCEEE
T ss_pred CEEcchhcCCCCCCCcchhHHhCCccccEE
Confidence 357889999999 9999999999865
No 67
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=91.23 E-value=0.064 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred cccccccccccc-----hhhhhcccccccc
Q psy3876 65 VEISLTDCLACS-----GCITSAESVLITQ 89 (477)
Q Consensus 65 a~I~~~~Ci~Cg-----~Cv~~Cp~~ai~~ 89 (477)
+.|+.+.|++|| .|+.+||++||..
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~ 32 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTL 32 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEE
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEE
Confidence 357888999999 9999999999864
No 68
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=91.13 E-value=0.064 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.8
Q ss_pred ccccccccccccchhhhhccccccccc
Q psy3876 64 KVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
.+.++.+.|+.||.|+.+||++||...
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~~ 53 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFGE 53 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBCC
T ss_pred eEEECcccCCCccHHHHhcCcCceecc
Confidence 467889999999999999999998753
No 69
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=90.87 E-value=0.018 Score=64.28 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCccccccc---cccCCCCCCCCceEEEecCCCceeecCcccccccccccccccccccchhhhhccccccccc
Q psy3876 21 PSQECIKPI---PIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAESVLITQQ 90 (477)
Q Consensus 21 ~~~~CI~c~---r~c~~~~~~~~~~i~i~~~G~~~~i~~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ai~~~ 90 (477)
+...|+.|. ++||... .....++...+|... .+....+.|+.||+|+.+||+++...+
T Consensus 413 ~~~~Ci~CG~C~~~CP~~~-~~~~il~~~~~G~~~-----------~~~~~~~~Ci~Cg~C~~vCP~ga~~~~ 473 (807)
T 3cf4_A 413 MVAKCADCGACLLACPEEI-DIPEAMGFAKKGDFS-----------YFEEIHDTCIGCRRCEQVCKKEIPILN 473 (807)
T ss_dssp HHHHCCCCCHHHHHCTTCC-CHHHHHHHHHTTCTH-----------HHHHHHHHCCCCCHHHHHCTTCCCHHH
T ss_pred hHHhCCCCCchhhhCCCCC-chHHHHHHHHcCChh-----------hhhhchhhccchhhHHHhCCCCCChHH
Confidence 456677776 6899863 111112222233211 122445789999999999999997654
No 70
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=87.18 E-value=0.25 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.0
Q ss_pred cccccccccchhhhhccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
.....|+.||.|+.+||+++..
T Consensus 201 ~~~~~C~~Cg~C~~vCP~gi~~ 222 (238)
T 2wdq_B 201 FSVFRCHSIMNCVSVCPKGLNP 222 (238)
T ss_dssp TTTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCCcCcccchhhhhcCCCCCH
Confidence 3567899999999999999854
No 71
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=86.26 E-value=0.2 Score=58.43 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.9
Q ss_pred ccccccccccchhhhhcccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~~ 89 (477)
.++.+.|+.||.|+.+||++||..
T Consensus 682 ~~d~~kCi~Cg~Cv~vCP~~AI~~ 705 (1231)
T 2c42_A 682 QWVPENCIQCNQCAFVCPHSAILP 705 (1231)
T ss_dssp EECTTTCCCCCHHHHHCSSCCEEE
T ss_pred EEeCccCCchhhHHHhCCcccccc
Confidence 578899999999999999999865
No 72
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=85.39 E-value=0.34 Score=45.80 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.5
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.....|+.||.|+.+||++.
T Consensus 199 ~~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 199 NGVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TTGGGCCCCCHHHHHCTTCC
T ss_pred CCcccCcccCCcchhCCCCC
Confidence 35678999999999999985
No 73
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=83.08 E-value=0.29 Score=46.34 Aligned_cols=22 Identities=14% Similarity=0.528 Sum_probs=19.6
Q ss_pred cccccccccchhhhhccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
.+.+.|+.||.|+.+||..++.
T Consensus 143 ~~~~~Ci~Cg~C~~~CP~~~~~ 164 (243)
T 1kf6_B 143 HQFSGCINCGLCYAACPQFGLN 164 (243)
T ss_dssp GGGGCCCCCCHHHHHCHHHHHC
T ss_pred hhhhhccccCccccccCCCccc
Confidence 6788999999999999998764
No 74
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=81.21 E-value=0.38 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.6
Q ss_pred ccccccccccchhhhhccccccc
Q psy3876 66 EISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 66 ~I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
..+.+.|+.||.|+.+||+.++.
T Consensus 143 ~~~~~~Ci~Cg~C~~~CP~~~~~ 165 (238)
T 2wdq_B 143 LDGLYECILCACCSTSCPSFWWN 165 (238)
T ss_dssp TTTTTTCCCCCTTGGGCHHHHHC
T ss_pred HhccccccccCCchhhCcCCccC
Confidence 35678999999999999998764
No 75
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=80.52 E-value=0.4 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=22.7
Q ss_pred cccccccccccccchhhhhccc----ccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAES----VLITQ 89 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~----~ai~~ 89 (477)
....++.++|+.||.|+.+||. +||..
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~ 168 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGKNTETYAMKF 168 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHHHHSCCCSEE
T ss_pred CcceeCcccCcCCCCccchhCchhcCCceee
Confidence 3467889999999999999998 77654
No 76
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=79.60 E-value=0.38 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.771 Sum_probs=18.9
Q ss_pred cccccccccchhhhhccccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLIT 88 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai~ 88 (477)
...+.|+.||.|+.+||+.++.
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~~ 167 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIMR 167 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHHC
T ss_pred hhhhhhhccCcCcccCCCCccC
Confidence 4567899999999999999864
No 77
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=78.87 E-value=0.5 Score=45.05 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.4
Q ss_pred cccccccccchhhhhcccccc
Q psy3876 67 ISLTDCLACSGCITSAESVLI 87 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
...+.|+.||.|+.+||+.++
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~~~ 173 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSYWW 173 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHHHH
T ss_pred HhHHhchhhCcchhhCCCCcc
Confidence 466789999999999999875
No 78
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=77.45 E-value=0.62 Score=53.41 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.7
Q ss_pred cccccccccccccchhhhhccc---cccccc
Q psy3876 63 KKVEISLTDCLACSGCITSAES---VLITQQ 90 (477)
Q Consensus 63 ~~a~I~~~~Ci~Cg~Cv~~Cp~---~ai~~~ 90 (477)
..+.++.+.|+.||.|+.+||+ +||...
T Consensus 944 ~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~ 974 (1025)
T 1gte_A 944 VVAVIDEEMCINCGKCYMTCNDSGYQAIQFD 974 (1025)
T ss_dssp EEEEECTTTCCCCCHHHHHHHHHSCSCEEEC
T ss_pred ceEEEEcccCcccCHHHHhcCccccCCEEEe
Confidence 4567999999999999999997 787643
No 79
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=76.91 E-value=1.1 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.9
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|+.||.|+.+||.+.
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i 229 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGL 229 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCC
T ss_pred CCCcCccccchhhhcCCCC
Confidence 4578999999999999986
No 80
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=74.56 E-value=1.3 Score=41.70 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=17.5
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.....|+.||.|+.+||.+.
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~i 222 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKNL 222 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTCC
T ss_pred cCcccCcccChhhHhcCCCC
Confidence 45678999999999999986
No 81
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=72.56 E-value=1.1 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=20.2
Q ss_pred ccccccccccccchhhhhc----cccccc
Q psy3876 64 KVEISLTDCLACSGCITSA----ESVLIT 88 (477)
Q Consensus 64 ~a~I~~~~Ci~Cg~Cv~~C----p~~ai~ 88 (477)
...++.++||.||.|+++| +..+|.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~ 201 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEEVPGDEVLD 201 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHHTTCCCCCE
T ss_pred cEEEchhhCCCccHHHHHhhhhcCCceee
Confidence 4567899999999999999 445554
No 82
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=56.69 E-value=2.4 Score=41.24 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=16.2
Q ss_pred cccccccchhhhhcccccc
Q psy3876 69 LTDCLACSGCITSAESVLI 87 (477)
Q Consensus 69 ~~~Ci~Cg~Cv~~Cp~~ai 87 (477)
...||.||.|..+||+...
T Consensus 179 ~~~CI~CG~C~~aCP~~~~ 197 (282)
T 3vr8_B 179 LYECILCACCSASCPSYWW 197 (282)
T ss_pred hhhCcccCcCcccCCceec
Confidence 3569999999999998764
No 83
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=51.86 E-value=5 Score=38.93 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.9
Q ss_pred ccccccccchhhhhccccc
Q psy3876 68 SLTDCLACSGCITSAESVL 86 (477)
Q Consensus 68 ~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
....|..||.|..+||.+.
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI 253 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHL 253 (282)
T ss_pred CcccChhhCCccccCcCCC
Confidence 4578999999999999876
No 84
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=50.58 E-value=3 Score=46.43 Aligned_cols=20 Identities=15% Similarity=0.605 Sum_probs=17.5
Q ss_pred cccccccccchhhhhccccc
Q psy3876 67 ISLTDCLACSGCITSAESVL 86 (477)
Q Consensus 67 I~~~~Ci~Cg~Cv~~Cp~~a 86 (477)
.+.+.|+.||.|+.+||+.+
T Consensus 412 ~~~~~Ci~CG~C~~~CP~~~ 431 (807)
T 3cf4_A 412 NMVAKCADCGACLLACPEEI 431 (807)
T ss_dssp HHHHHCCCCCHHHHHCTTCC
T ss_pred HhHHhCCCCCchhhhCCCCC
Confidence 34678999999999999986
No 85
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=47.09 E-value=6.4 Score=39.91 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=19.3
Q ss_pred cccccccc---ccchhhhhcccccccc
Q psy3876 66 EISLTDCL---ACSGCITSAESVLITQ 89 (477)
Q Consensus 66 ~I~~~~Ci---~Cg~Cv~~Cp~~ai~~ 89 (477)
.|+.+.|. .|+.|+.+||++||..
T Consensus 212 ~id~e~~~~~Ce~~~cv~~CPt~AI~~ 238 (386)
T 3or1_B 212 MIDHENLAELCEIPLAVAACPTAAVKP 238 (386)
T ss_dssp CCCTTTHHHHCCHHHHHHHCTTCCEEE
T ss_pred eechhhhcccccchhhhhhCchhhccc
Confidence 57777765 4589999999999976
No 86
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=46.55 E-value=3.3 Score=41.63 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=20.5
Q ss_pred cccccccc-ccc--chhhhhccccccccc
Q psy3876 65 VEISLTDC-LAC--SGCITSAESVLITQQ 90 (477)
Q Consensus 65 a~I~~~~C-i~C--g~Cv~~Cp~~ai~~~ 90 (477)
..|+.+.| ..| +.|+.+||++||...
T Consensus 200 p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~ 228 (366)
T 3mm5_B 200 PIPNDEAIRKTCEIPSTVAACPTGALKPD 228 (366)
T ss_dssp CCCCHHHHHHHCCHHHHHHTCTTCCEEEE
T ss_pred eEEcchhccccccccchhccCCccceEec
Confidence 35777777 456 999999999999763
No 87
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.38 E-value=66 Score=24.45 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=27.7
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHcCCcEEEEC
Q psy3876 127 SLGAKFALSHEQVVAKLCGFFKRLGVDLVLDV 158 (477)
Q Consensus 127 sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt 158 (477)
-+++.||+...+...+|......=.++-|+|-
T Consensus 26 dLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 26 DLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999998888888888888778888885
No 88
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=27.25 E-value=17 Score=22.12 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=7.0
Q ss_pred CCCccccCC
Q psy3876 394 ACPSGCLNG 402 (477)
Q Consensus 394 ACpgGCi~G 402 (477)
.||+||.+-
T Consensus 7 tcpsgcsgd 15 (31)
T 2hm3_A 7 TCPSGCSGD 15 (31)
T ss_dssp CCCTTCCGG
T ss_pred cCCCCcCcc
Confidence 599999754
No 89
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=25.84 E-value=2.1e+02 Score=29.79 Aligned_cols=64 Identities=5% Similarity=-0.147 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCcEEEECccchhh---------hHHHHHHHHHHHhhcCCCCcccccChhHHHHHHHhcCC
Q psy3876 138 QVVAKLCGFFKRLGVDLVLDVGIAHCF---------SLVELENEFLDRFLSGGGPLFTSECPGWVCYAEKSHGE 202 (477)
Q Consensus 138 ~~~~~l~~~Lk~lGf~~V~Dt~~~ad~---------~~~e~~~e~~~~~~~~~~p~itS~CP~~V~yiEk~~p~ 202 (477)
+....+...|+++|+..++--+-|+.. ...+-+..-++...+...+ |-+.||+=...+..+++.
T Consensus 268 ~~~~a~~~vL~~lGiev~~~~CCGap~~~~~~G~~~~a~~la~rNi~~~~~~g~d-IVt~c~sC~~~lk~~~~~ 340 (514)
T 3kwl_A 268 SLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKANGVS-LIFCEEDAYLNILHAKEV 340 (514)
T ss_dssp HHHHHHHHHHHHTTCEEECCCCCCCCTTTHHHHCHHHHHHHHHHHHHHHHHTTCE-EEECSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeEEeCCCCChHHhccccCCHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHHHHHHH
Confidence 456788999999999987543333221 1111222223333322346 556688877766665543
No 90
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=25.03 E-value=11 Score=38.71 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=14.1
Q ss_pred cchhhhhccccccccc
Q psy3876 75 CSGCITSAESVLITQQ 90 (477)
Q Consensus 75 Cg~Cv~~Cp~~ai~~~ 90 (477)
|+.|+.+||++||...
T Consensus 260 ~~~cv~~CPt~Ai~~~ 275 (418)
T 3mm5_A 260 ENEVVKLCPTGAIKWD 275 (418)
T ss_dssp HHHTGGGCTTCCEEEC
T ss_pred CccccccCCccccccC
Confidence 5889999999999864
No 91
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=22.59 E-value=26 Score=33.34 Aligned_cols=18 Identities=6% Similarity=0.219 Sum_probs=15.9
Q ss_pred cccchhhhhccccccccc
Q psy3876 73 LACSGCITSAESVLITQQ 90 (477)
Q Consensus 73 i~Cg~Cv~~Cp~~ai~~~ 90 (477)
..||.|+..||.++|...
T Consensus 174 ~~C~~C~~~CP~g~I~id 191 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELK 191 (265)
T ss_dssp SCCTTHHHHCTTCCEEEE
T ss_pred hhHHHHHHhCcccCeEec
Confidence 889999999999998653
No 92
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=22.53 E-value=1.7e+02 Score=20.40 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCcEE
Q psy3876 140 VAKLCGFFKRLGVDLV 155 (477)
Q Consensus 140 ~~~l~~~Lk~lGf~~V 155 (477)
+..|..++++.||...
T Consensus 48 ~~~i~~~i~~~Gy~~~ 63 (68)
T 3iwl_A 48 MDTLLATLKKTGKTVS 63 (68)
T ss_dssp HHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHcCCceE
Confidence 5789999999999864
No 93
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} SCOP: c.1.8.0 PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A* 3d5h_A*
Probab=22.11 E-value=2.5e+02 Score=26.70 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHH----HHH----------HHcC---CcEE-
Q psy3876 94 EVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLC----GFF----------KRLG---VDLV- 155 (477)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~----~~L----------k~lG---f~~V- 155 (477)
.+...++..+. .+++|.+||-++ ...|.++......++. ..+ |.+| ||-+
T Consensus 55 ~l~~dI~~cQ~-------~G~kVlLSiGG~-----~g~~~l~s~~~a~~fa~~l~~~f~p~~~g~~~~rp~g~~~lDGiD 122 (273)
T 3mu7_A 55 GLEPQIKHCQS-------KNVKVLLSIGGP-----AGPYSLDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVLDGID 122 (273)
T ss_dssp THHHHHHHHHH-------TTCEEEEEEEES-----SCSBCCCSHHHHHHHHHHHHHHHTSCCCSSCCCCTTTTCCCSEEE
T ss_pred HHHHHHHHHHH-------CCCEEEEEeccC-----CCceecCCHHHHHHHHHHHHHHhccccCCCcccccccccccCceE
Confidence 34444555543 478999999884 2345565443333343 333 4456 7765
Q ss_pred EECccchhhhHHHHHHHHHHHhhcCCCCccccc--Chh
Q psy3876 156 LDVGIAHCFSLVELENEFLDRFLSGGGPLFTSE--CPG 191 (477)
Q Consensus 156 ~Dt~~~ad~~~~e~~~e~~~~~~~~~~p~itS~--CP~ 191 (477)
||...+..-...+-++++...++.++.-+||-+ ||.
T Consensus 123 ~D~E~~~~~~~~~l~~~Lr~~~~~g~~~~LTaAPqcp~ 160 (273)
T 3mu7_A 123 FHIEHGGPSQYQLLANILSSFRLSGSEFALTAAPQCVY 160 (273)
T ss_dssp EEECSSCSTTHHHHHHHHHHHHTTSSCCEEEECCBSSS
T ss_pred eecccCCchhHHHHHHHHHHHhccCCceEEEEcccCCC
Confidence 554444321122223344333332345667776 883
Done!