RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3876
(477 letters)
>gnl|CDD|217280 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit,
C-terminal domain.
Length = 272
Score = 250 bits (640), Expect = 2e-80
Identities = 103/303 (33%), Positives = 153/303 (50%), Gaps = 41/303 (13%)
Query: 114 KTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEF 173
K +V +A ++ G +F L V KL ++LG D V D +++E +EF
Sbjct: 1 KKVVAQIAPAVRVAFGEEFGLPPGTVTGKLVAALRKLGFDYVFDTAFGADLTIMEEASEF 60
Query: 174 LDRFLSGG-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGV 232
L+R G P+FTS CP WV Y EK + E +LP +S KSP Q+ G+LIKT
Sbjct: 61 LERLKKGEKLPMFTSCCPAWVKYVEKYYPE-LLPNLSTCKSPMQMFGALIKTD------- 112
Query: 233 HPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLL-ANELATTTLQE 291
P I+ V++MPC KK EA+R +F DVD V+T EL ++ + +L++
Sbjct: 113 -PPDIFVVSIMPCTAKKFEAARPEFK------GDVDAVLTTRELAAMIKEAGIDFASLED 165
Query: 292 EKDGILDWPWDEHNPHRMLLVNGTG-------SGGYAHNVLSHAIRQLCPGESPVVEFKP 344
E+ D P E +G +GG L A L E P +EFK
Sbjct: 166 EE---FDSPLGE----------SSGAGRIFGVTGGVMEAALRTAYELLTGKELPNIEFKQ 212
Query: 345 LRNPD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGG 403
+R + I+EAT D+ ++ + +G +N + L++K+K + Y FIE+MACP GC+ GG
Sbjct: 213 VRGLEGIKEATV---DIEVKVAVVSGLKNARKLLEKIKAGEIDYHFIEVMACPGGCIGGG 269
Query: 404 AQI 406
Q
Sbjct: 270 GQP 272
>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
domain [General function prediction only].
Length = 411
Score = 229 bits (585), Expect = 2e-70
Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 26/398 (6%)
Query: 62 LKKVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLA 121
L+K+ ISL+DCLACSGCITS E I+ QS ++V++ + K +++S A
Sbjct: 26 LEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEEL--------EDLFCDKIVLVSNA 77
Query: 122 IQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSG 180
+L +F LS + VA + F K+LG D V+D ++E EFL+R
Sbjct: 78 PSVRAALAEEFGLSEGEAVAVLMSFFLKKLGFDKVVDTNFGADMVIMEEAAEFLERVKKN 137
Query: 181 G-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYH 239
PLFTS CPGWV YAEK++ +LP +S VKSPQQ +GSLIKT+ AEKLG+ P +YH
Sbjct: 138 DDLPLFTSCCPGWVNYAEKTYPN-LLPNLSSVKSPQQALGSLIKTYYAEKLGIAPEDVYH 196
Query: 240 VTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDW 299
V++MPC KKLEA R +E R +D V+T EL +L + DG D
Sbjct: 197 VSIMPCIAKKLEADR-----DEDNGRAIDFVLTTRELVKML--KELRIDFARLPDGHYDS 249
Query: 300 PWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFTCGD 359
P + +L +GG VL + V+ + +R I+EA G
Sbjct: 250 PAGFSSGAGLL---FGSTGGVMEAVLRTRLLH--DKHIEAVDSEEVRR-GIQEAERKLGG 303
Query: 360 VTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETAL 419
+ + + G +N++N + YDFIE+MACP GC+NGG Q E+ KE A
Sbjct: 304 SSRKIAVVEGVKNVRNFFKSTTADEYRYDFIEVMACPGGCINGGGQPYVERND--KERAS 361
Query: 420 ELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKH 457
L+T K + +N L+ + + ++ + + H
Sbjct: 362 VLQTKNGREPKLKSVDNLALKKMLEEYVKDPLSHELLH 399
>gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A. This model
describes iron-only hydrogenases of anaerobic and
microaerophilic bacteria and protozoa. This model is
narrower, and covers a longer stretch of sequence, than
pfam02906. This family represents a division among
families that belong to pfam02906, which also includes
proteins such as nuclear prelamin A recognition factor
in animals. Note that this family shows some
heterogeneity in terms of periplasmic, cytosolic, or
hydrogenosome location, NAD or NADP dependence, and
overal protein protein length.
Length = 374
Score = 205 bits (524), Expect = 8e-62
Identities = 120/349 (34%), Positives = 183/349 (52%), Gaps = 34/349 (9%)
Query: 67 ISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPV- 125
+ ++C+ C C IT++ H V +V+ KA ++ +V I P
Sbjct: 47 LDESNCIGCGQCSLVCPVGAITEKDH--VDRVL------KALADPKKVVVVQ---IAPAV 95
Query: 126 -LSLGAKFAL-SHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGGG- 182
++LG +F + V K+ ++LG D V D A +++E E L+R +GG
Sbjct: 96 RVALGEEFGMPIGTDVTGKMVAALRKLGFDYVFDTNFAADLTIMEEGTELLERLKNGGKL 155
Query: 183 PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTL 242
P+FTS CPGWV YAEK + E LP +S KSPQQ++G++IKT+ A+K+G+ P +Y V++
Sbjct: 156 PMFTSCCPGWVNYAEKYYPEL-LPNLSSCKSPQQMLGAVIKTYWAKKMGIDPEDVYVVSI 214
Query: 243 MPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWD 302
MPC KK EA R + ++ GYRDVD V+T EL ++ + A + D D P+
Sbjct: 215 MPCTAKKDEAQRPELKSD--GYRDVDAVLTTRELARMI--KEAGIDFAKLPDSQFDSPFG 270
Query: 303 EHNPHRMLLVNGTG-----SGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPD-IREATFT 356
E +G G +GG L A + E ++EFK +R D ++EAT
Sbjct: 271 E--------YSGAGAIFGATGGVMEAALRTAYEIVTGKELELIEFKAVRGLDGVKEATVD 322
Query: 357 CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQ 405
G ++ +A+G N + L+ +K Y FIE+MACP GC+NGG Q
Sbjct: 323 IGGTKVKVAVAHGLGNARKLLDDVKAGEADYHFIEVMACPGGCVNGGGQ 371
>gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3. See
PMID:20395274 for descriptions of different groups.
Length = 462
Score = 76.5 bits (189), Expect = 7e-15
Identities = 70/277 (25%), Positives = 107/277 (38%), Gaps = 65/277 (23%)
Query: 140 VAKLCGFFKRLGVDLVLDVGI-AHCFSLVELENEFLDRFLSGGGPLFTSECPGWVCYAEK 198
++ K+LG V++V + A ++ E E EF +R G + TS CP +V +K
Sbjct: 242 PGQVKTALKKLGFADVVEVALGADMVAVHEAE-EFAERVEEGKPFMTTSCCPAFVNMIKK 300
Query: 199 SHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFY 258
E IS SP IK P V + PC KKLEA R
Sbjct: 301 HFPELA-ENISTTVSPMVATARYIKKK-------DP-DAKVVFIGPCIAKKLEAQR---- 347
Query: 259 NEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTG-- 316
+E+ DVD V+T EL + L+E ++ LD + +
Sbjct: 348 -DEVK-GDVDYVLTFEELAAMFDA--KGIDLEECEEEDLD--------------DASAFG 389
Query: 317 -----SGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFTCGDVTLRFCIANGFR 371
SGG ++ A+++ + P VE KP++ NG
Sbjct: 390 RGFAVSGG-----VAAAVKEAIKEKGPDVEVKPVK--------------------CNGLD 424
Query: 372 NIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRN 408
+ + K +LP +FIE MAC GC+ G + +
Sbjct: 425 ECKKALTLAKAGKLPGNFIEGMACEGGCVGGPGTLVS 461
>gnl|CDD|214899 smart00902, Fe_hyd_SSU, Iron hydrogenase small subunit. Many
microorganisms, such as methanogenic, acetogenic,
nitrogen-fixing, photosynthetic, or sulphate-reducing
bacteria, metabolise hydrogen. Hydrogen activation is
mediated by a family of enzymes, termed hydrogenases,
which either provide these organisms with reducing power
from hydrogen oxidation, or act as electron sinks. There
are two hydrogenases families that differ functionally
from each other: NiFe hydrogenases tend to be more
involved in hydrogen oxidation, while Iron-only FeFe (Fe
only) hydrogenases in hydrogen production. Fe only
hydrogenases show a common core structure, which
contains a moiety, deeply buried inside the protein,
with an Fe-Fe dinuclear centre, nonproteic bridging,
terminal CO and CN- ligands attached to each of the iron
atoms, and a dithio moiety, which also bridges the two
iron atoms and has been tentatively assigned as a
di(thiomethyl)amine. This common core also harbours
three [4Fe-4S] iron-sulphur clusters. In FeFe
hydrogenases, as in NiFe hydrogenases, the set of
iron-sulphur clusters is dispersed regularly between the
dinuclear Fe-Fe centre and the molecular surface. These
clusters are distant by about 1.2 nm from each other but
the [4Fe-4S] cluster closest to the dinuclear centre is
covalently bound to one of the iron atoms though a
thiolate bridging ligand. The moiety including the
dinuclear centre, the thiolate bridging ligand, and the
proximal [4Fe-4S] cluster is known as the H-cluster. A
channel, lined with hydrophobic amino acid side chains,
nearly connects the dinuclear centre and the molecular
surface. Furthermore hydrogen-bonded water molecule
sites have been identified at the interior and at the
surface of the protein. The small subunit is comprised
of alternating random coil and alpha helical structures
that encompass the large subunit in a novel protein
fold.
Length = 52
Score = 36.5 bits (85), Expect = 0.001
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 428 LAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIP 467
L + EN ++ LY+ +LGG + K +L+T YH+
Sbjct: 13 LPLRKSHENPAVKKLYEEFLGGPLSHKAHELLHTHYHDRE 52
>gnl|CDD|190260 pfam02256, Fe_hyd_SSU, Iron hydrogenase small subunit. This family
represents the small subunit of the Fe-only hydrogenases
EC:1.18.99.1. The subunit is comprised of alternating
random coil and alpha helical structures that
encompasses the large subunit in a novel protein fold.
Length = 60
Score = 33.8 bits (78), Expect = 0.013
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 427 DLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHN 465
L KS EN ++ LY+ +LG + K +L+T Y +
Sbjct: 22 PLRKSH--ENPAVKKLYEEFLGEPLSHKAHELLHTHYKD 58
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 34.8 bits (80), Expect = 0.061
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 426 CDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALNV 475
L K EP A E AW G D+G N S NI + L V
Sbjct: 98 DYLRKVEPMHRALKELHASAWFTGLRRDQGPSRANLSILNIDEKFGILKV 147
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 35.2 bits (81), Expect = 0.068
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 50 AYIQETNGREEKLKKVEISLT-DCLACSGCITSAE-SVLITQQSHEEVMKVIRENNAHKA 107
AYI+ T ++ ++ + S T D +G I ++E S+++ + + + V++ +++ +
Sbjct: 220 AYIERTANVKKAVRDIIDSKTFD----NGTICASEQSIIVEECNKDAVVEELKKQGGYFL 275
Query: 108 SSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGF 146
++ E K + ++P ++ + QV+A L G
Sbjct: 276 TAEEAEK--LGKFILRPNGTMNPQIVGKSPQVIANLAGL 312
>gnl|CDD|239086 cd02393, PNPase_KH, Polynucleotide phosphorylase (PNPase) K
homology RNA-binding domain (KH). PNPase is a
polyribonucleotide nucleotidyl transferase that
degrades mRNA in prokaryotes and plant chloroplasts.
The C-terminal region of PNPase contains domains
homologous to those in other RNA binding proteins: a KH
domain and an S1 domain. KH domains bind
single-stranded RNA and are found in a wide variety of
proteins including ribosomal proteins, transcription
factors and post-transcriptional modifiers of mRNA.
Length = 61
Score = 29.4 bits (67), Expect = 0.48
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
D IGP + IK I IE+ TG KI I+DDG
Sbjct: 15 DVIGPGGKTIKKI-IEE-----TGVKIDIEDDG 41
>gnl|CDD|145973 pfam03114, BAR, BAR domain. BAR domains are dimerisation, lipid
binding and curvature sensing modules found in many
different protein families. A BAR domain with an
additional N-terminal amphipathic helix (an N-BAR) can
drive membrane curvature. These N-BAR domains are found
in amphiphysin, endophilin, BRAP and Nadrin. BAR domains
are also frequently found alongside domains that
determine lipid specificity, like pfam00169 and
pfam00787 domains in beta centaurins and sorting nexins
respectively.
Length = 230
Score = 31.1 bits (71), Expect = 0.95
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 370 FRNIQNLIQKLKRKRLPYD 388
F++IQ I+KL+RKRL YD
Sbjct: 130 FKDIQKHIKKLERKRLDYD 148
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.4 bits (72), Expect = 1.1
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
D IGP + IK I E+ TG KI I+DDG
Sbjct: 565 DVIGPGGKTIKAI-TEE-----TGVKIDIEDDG 591
>gnl|CDD|178350 PLN02749, PLN02749, Uncharacterized protein At1g47420.
Length = 173
Score = 30.1 bits (68), Expect = 1.6
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 2 ASSRFSGVLQ--LTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGRE 59
A F G L ++DD IG S E +KP+P + T + AY+ ++ G E
Sbjct: 69 AVEEFGGTLVSLRMEIDDLIGLSGENVKPLPDYIENALETAYQRYA----AYL-DSFGPE 123
Query: 60 EKL--KKVEISL 69
E KKVE+ L
Sbjct: 124 ENYLKKKVEMEL 135
>gnl|CDD|225382 COG2826, Tra8, Transposase and inactivated derivatives, IS30 family
[DNA replication, recombination, and repair].
Length = 318
Score = 30.4 bits (69), Expect = 2.1
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 202 EFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEE 261
E +L + SP+Q++G L K+ + IY Y K EA R
Sbjct: 81 ELVLEKLKSKWSPEQIIGRLKKSK------ISFETIYRWL----YQGKSEALRHHLRYLR 130
Query: 262 LGYR 265
R
Sbjct: 131 HKRR 134
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 30.5 bits (70), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
D IGP + I+ I E+ TGAKI I+DDG
Sbjct: 564 DVIGPGGKVIREI-TEE-----TGAKIDIEDDG 590
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 29.3 bits (66), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 370 FRNIQNLIQKLKRKRLPYD 388
F+ I+ +KL+RK L YD
Sbjct: 133 FKEIKKARKKLERKLLDYD 151
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 29.2 bits (66), Expect = 4.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 20/66 (30%)
Query: 372 NIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILCDLAKS 431
N L KL+R +LP ++E + V SP+ T L++E + D
Sbjct: 32 NTAALKAKLERIKLPLPWVERLD----------------VTSPEPTDLQIEDVEDDFK-- 73
Query: 432 EPRENA 437
RE A
Sbjct: 74 --RELA 77
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 29.6 bits (68), Expect = 4.2
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGA-YIQETNGREEKLKK 64
D IGP + I+ I E+ TGAKI I+DDG I T+G E +
Sbjct: 567 DVIGPGGKTIREI-TEE-----TGAKIDIEDDGTVKIAATDG--EAAEA 607
>gnl|CDD|131743 TIGR02696, pppGpp_PNP, guanosine pentaphosphate synthetase
I/polynucleotide phosphorylase. Sohlberg, et al present
characterization of two proteins from Streptomyces
coelicolor. The protein in this family was shown to have
poly(A) polymerase activity and may be responsible for
polyadenylating RNA in this species. Reference 2 showed
that a nearly identical plasmid-encoded protein from
Streptomyces antibioticus is a bifunctional enzyme that
acts also as a guanosine pentaphosphate synthetase.
Length = 719
Score = 29.4 bits (66), Expect = 5.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 19 IGPSQECIKPIPIEKPSGPRTGAKIRIQDDGA-YIQETNG 57
IGP + I I E TGA+I I+DDG YI +G
Sbjct: 593 IGPKGKMINQIQDE------TGAEISIEDDGTVYIGAADG 626
>gnl|CDD|217364 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein.
Phosphotyrosyl phosphatase activator (PTPA) proteins
stimulate the phosphotyrosyl phosphatase (PTPase)
activity of the dimeric form of protein phosphatase 2A
(PP2A). PTPase activity in PP2A (in vitro) is relatively
low when compared to the better recognised
phosphoserine/ threonine protein phosphorylase activity.
The specific biological role of PTPA is unknown, Basal
expression of PTPA depends on the activity of a
ubiquitous transcription factor, Yin Yang 1 (YY1). The
tumour suppressor protein p53 can inhibit PTPA
expression through an unknown mechanism that negatively
controls YY1.
Length = 298
Score = 28.7 bits (65), Expect = 6.8
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 208 ISRVKSPQQVMGSLIKTHLAEKLGVHP--SHIYHVTLMPCYD 247
IS VKS +V LIK + AE LG P H +L+P D
Sbjct: 254 ISGVKSWSKVNQGLIKMYKAEVLGKFPVVQHFLFGSLLPWPD 295
>gnl|CDD|222654 pfam14290, DUF4370, Domain of unknown function (DUF4370).
Length = 238
Score = 28.3 bits (63), Expect = 8.8
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 2 ASSRFSGVLQL--TDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGRE 59
A F G+L +LDD IG S E +KP+P + RT Q Y+ ++ G E
Sbjct: 134 AVEEFGGILVSLKMELDDLIGLSGENVKPLPDYIENALRTA----YQRYSTYL-DSFGPE 188
Query: 60 EKL--KKVEISL 69
E KKVE L
Sbjct: 189 EGYLRKKVETEL 200
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,795,072
Number of extensions: 2307642
Number of successful extensions: 1976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 27
Length of query: 477
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 376
Effective length of database: 6,457,848
Effective search space: 2428150848
Effective search space used: 2428150848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)