RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3876
(477 letters)
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 354 bits (910), Expect = e-119
Identities = 102/395 (25%), Positives = 158/395 (40%), Gaps = 31/395 (7%)
Query: 51 YIQETNGREEKLKKVEISLTDCLACSGCITSA-ESVLITQQSH-EEVMKVIRENNAHKAS 108
E + C+ C C+T E+ + QS EV K +++
Sbjct: 47 TAAIFGEMGEP--HSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGK----- 99
Query: 109 SNENTKTIVLSLAIQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLV 167
+ A +LG F + V K+ ++LG D ++
Sbjct: 100 -----VKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIW 154
Query: 168 ELENEFLDRFLSGGG---PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKT 224
E +EF++R P FTS CPGW YAE + E LP+ S KSP + G+L KT
Sbjct: 155 EEGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPEL-LPHFSTCKSPIGMNGALAKT 213
Query: 225 HLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLL-ANE 283
+ AE++ P +Y V++MPC KK E R + + G RD+D +T EL ++
Sbjct: 214 YGAERMKYDPKQVYTVSIMPCIAKKYEGLRPELKSS--GMRDIDATLTTRELAYMIKKAG 271
Query: 284 LATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFK 343
+ L + K D E +GG L A + + +FK
Sbjct: 272 IDFAKLPDGK---RDSLMGESTGGA---TIFGVTGGVMEAALRFAYEAVTGKKPDSWDFK 325
Query: 344 PLRNPD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNG 402
+R D I+EAT G ++ + +G + + + +K + PY FIE MACP GC+ G
Sbjct: 326 AVRGLDGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCG 385
Query: 403 GAQIRNEKVASPKETALELETILCDLAKSEPRENA 437
G Q V + + L K +A
Sbjct: 386 GGQPVMPGVLEAMDRTTTR--LYAGLKKRLAMASA 418
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 352 bits (906), Expect = e-116
Identities = 112/414 (27%), Positives = 181/414 (43%), Gaps = 29/414 (7%)
Query: 61 KLKKVEISLTDCLACSGCITSAESVLITQQSH-EEVMKVIRENNAHKASSNENTKTIVLS 119
+ T+CL C CI + ++++SH + V + K ++++
Sbjct: 179 AEDEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALNAPE----------KHVIVA 228
Query: 120 LAIQPVLSLGAKFALS-HEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFL 178
+A S+G F + V K+ ++LG D + D+ +++E E + R
Sbjct: 229 MAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIE 288
Query: 179 SGG-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHI 237
+ G P+FTS CPGWV AE + E L +S KSPQQ+ G+ KT+ G+ P ++
Sbjct: 289 NNGPFPMFTSCCPGWVRQAENYYPEL-LNNLSSAKSPQQIFGTASKTYYPSISGLDPKNV 347
Query: 238 YHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLL-ANELATTTLQEEKDGI 296
+ VT+MPC KK EA R + G RD+D VIT EL ++ ++ L++ +
Sbjct: 348 FTVTVMPCTSKKFEADRPQMEKD--GLRDIDAVITTRELAKMIKDAKIPFAKLEDSE--- 402
Query: 297 LDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPD-IREATF 355
D E++ +GG L A E +E+K +R + I+EA
Sbjct: 403 ADPAMGEYSG---AGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEAEV 459
Query: 356 TCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIR-----NEK 410
+ + NG N+ ++ Y FIE+MAC GC+NGG Q EK
Sbjct: 460 EINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEK 519
Query: 411 VASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYH 464
V K A L L+K + EN L +Y+ + G + +L+ Y
Sbjct: 520 VDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYK 573
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 313 bits (802), Expect = e-102
Identities = 118/464 (25%), Positives = 183/464 (39%), Gaps = 74/464 (15%)
Query: 68 SLTDCLAC-SGCITSAESVLI-TQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPV 125
+ +AE+ L QQ+ E+ K + K + + +A
Sbjct: 6 HHHHHSQDPNSAAPAAEAPLSHVQQALAELAKPK---------DDPTRKHVCVQVAPAVR 56
Query: 126 LSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRF------- 177
+++ L+ +L +RLG D V D +++E +E L R
Sbjct: 57 VAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSELLHRLTEHLEAH 116
Query: 178 --LSGGGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPS 235
P+FTS CPGW+ EKS+ + I PY+S KSPQ ++ +++K++LAEK G+ P
Sbjct: 117 PHSDEPLPMFTSCCPGWIAMLEKSYPDLI-PYVSSCKSPQMMLAAMVKSYLAEKKGIAPK 175
Query: 236 HIYHVTLMPCYDKKLEASRADFY-NEELGYRDVDCVITAVELEVLLANELATTTLQEEKD 294
+ V++MPC K+ EA R F + + R +D VIT VEL + + L E +
Sbjct: 176 DMVMVSIMPCTRKQSEADRDWFCVDADPTLRQLDHVITTVELGNIF--KERGINLAELPE 233
Query: 295 GILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPD-IREA 353
G D P + +L +GG L A P + +R D I+E
Sbjct: 234 GEWDNPMGVGSGAGVL---FGTTGGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKET 290
Query: 354 TFTC---------------------------------------------GDVTLRFCIAN 368
T G +TLR +AN
Sbjct: 291 NITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAWDGGAGFTSEDGRGGITLRVAVAN 350
Query: 369 GFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILCDL 428
G N + LI K++ YDF+EIMACP+GC+ GG Q R+ A ++ L +
Sbjct: 351 GLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDKAITQKRQAALYNLDEKS 410
Query: 429 AKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIA 472
EN ++ LY +LG K +L+T Y
Sbjct: 411 TLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVEEKD 454
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D*
Length = 123
Score = 79.1 bits (195), Expect = 5e-18
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 386 PYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILCDL----AKSEPR---ENAT 438
F+++ +G G ++ + VA+ K+ + + + AK R +N
Sbjct: 8 RRGFLKVACVTTGAALIGIRMTGKAVAAVKQIKDYMLDRINGVYGADAKFPVRASQDNTQ 67
Query: 439 LEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALN 474
++ LYK++L K +L+T + + K L
Sbjct: 68 VKALYKSYLEKPLGHKSHDLLHTHWFDKSKGVKELT 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 58/372 (15%), Positives = 102/372 (27%), Gaps = 111/372 (29%)
Query: 152 VDLVLDVGIAHCFSLVELENEFLDRFLSGGGPLFTSECPGWVCYAEKSHGEFILPYISRV 211
V ++ L+ + ++ + G + W+ + + L I +
Sbjct: 184 VGDLIKFSAETLSELIRTTLDA-EKVFTQGLNIL-----EWLENPSNTPDKDYLLSIP-I 236
Query: 212 KSPQQVMGSLIKTH---LAEKLGVHPSHIYHVT--LMPCYDKKLEA-------SRADFYN 259
P + L H A+ LG P + + A S F+
Sbjct: 237 SCPLIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF- 293
Query: 260 EELGYRDVDCVITAVEL---------EVLLANELATTTLQEEKDGILDWPWDEHNPHRML 310
V A+ + E L + L++ + +E P ML
Sbjct: 294 --------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN------NEGVPSPML 339
Query: 311 LVNGTGSGGYAHNVLSHAIRQLC---PGESPVVEFKPLRN-PDIREATFT-CGD-VTLR- 363
++ + + + P V L N G +L
Sbjct: 340 SIS-----NLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAK----NLVVSGPPQSLYG 388
Query: 364 FCIANGFRNI-------QNLIQKLKRK-RLPYDFIEIMACP--SGCLNGGAQIRNEKVAS 413
+ R Q+ I +RK + F+ + + P S L
Sbjct: 389 LNLT--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLL------------- 432
Query: 414 PKETALELETILCDLAKSEPRENATLEHL----YKAWLGGKSTDKGKHMLNTSYHNIPKN 469
A +L I DL K+ NA + + Y T G + S +I +
Sbjct: 433 --VPASDL--INKDLVKNNVSFNA--KDIQIPVY-------DTFDGSDLRVLS-GSISER 478
Query: 470 ----NIALNVKW 477
I L VKW
Sbjct: 479 IVDCIIRLPVKW 490
Score = 41.6 bits (97), Expect = 5e-04
Identities = 86/457 (18%), Positives = 124/457 (27%), Gaps = 159/457 (34%)
Query: 81 SAE-SVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQV 139
S E +L+ S + ++E E T+ L KF L +
Sbjct: 15 SLEHVLLVPTASFF-IASQLQEQ--FNKILPEPTEGFAADDEPTTPAELVGKF-LGY--- 67
Query: 140 VAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGGGPLFTSECPGWVCYAEKS 199
V+ L K D VL++ + EF + +L G
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCL----------TEFENCYLEG----------------NDI 101
Query: 200 HGEFILPYISRVKSPQQVMGSLIKTHL-AEKLGVHPSHIYHVTLMPCYDKKLEASRAD-- 256
H + + LIK ++ A + P + + A
Sbjct: 102 HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGNA 154
Query: 257 -----F--------YNEEL-----GYRD-VDCVITAVELEVLLANELATTTLQEEK---D 294
F Y EEL Y V +I E L +EL TTL EK
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA-ETL--SELIRTTLDAEKVFTQ 211
Query: 295 G--ILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHA--------IRQLC----------- 333
G IL+W NP T Y L + QL
Sbjct: 212 GLNILEWL---ENPSN------TPDKDY----LLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 334 -PGESPVVEFKPLRNPDIREATFTCG-DVTLRFCIANG------FRNIQNLIQKL----K 381
PGE LR + + IA F +++ I L
Sbjct: 259 TPGE--------LR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 382 R--KRLPYDFIEIMACPS---GCLNGGAQIRNEKVASP--KETALELETILCDLAKSEPR 434
R + P + PS L E V SP + L E + + K+
Sbjct: 309 RCYEAYPNTSLP----PSILEDSLENN-----EGVPSPMLSISNLTQEQVQDYVNKT--- 356
Query: 435 ENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNI 471
N+ L GK + S N KN +
Sbjct: 357 -NSHL-------------PAGKQ-VEISLVNGAKNLV 378
Score = 33.9 bits (77), Expect = 0.14
Identities = 56/292 (19%), Positives = 84/292 (28%), Gaps = 96/292 (32%)
Query: 18 FIGP-SQEC-----IKPIPIEK--------PSGP----RTGAKIRIQDDGAYIQETNGRE 59
FIG E + P +E PS P + ++QD Y+ +TN
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQD---YVNKTNSHL 360
Query: 60 EKLKKVEISLT---DCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTI 116
K+VEISL L SG +S L +R+ KA S + I
Sbjct: 361 PAGKQVEISLVNGAKNLVVSG---PPQS-LYGLNLT------LRK---AKAPSGLDQSRI 407
Query: 117 VLS---LAIQ----PVLSLGAKFALSH----EQVVAKLCGFFKRLGVDL-VLDVGIA--H 162
S L PV + F H + + V D+ I
Sbjct: 408 PFSERKLKFSNRFLPV---ASPF---HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 163 CFS---LVELENEFLDRFLSGGGPLFTSECPGW--VCYAEKSHGEFIL---P-YISRVKS 213
F L L +R + W + +H IL P S +
Sbjct: 462 TFDGSDLRVLSGSISERIV----DCIIRLPVKWETTTQFKATH---ILDFGPGGASGL-- 512
Query: 214 PQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYR 265
G L + GV + L+ + D + G++
Sbjct: 513 -----GVLTH-RNKDGTGV---RVIVAG-------TLDINPDD----DYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 53/415 (12%), Positives = 114/415 (27%), Gaps = 151/415 (36%)
Query: 77 GC---ITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTI---VLSLAIQ---PVLS 127
C +T+ +T I ++ + + K++ L Q +
Sbjct: 265 SCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 128 LGAKFALSHEQVVAKLC-------GFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSG 180
LS ++A+ +K + D + + I +++E E+ F
Sbjct: 324 TTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLE-PAEYRKMFDR- 377
Query: 181 GGPLFTSECPGWVCYAEKSHGEFILPYISRVKS--------------PQQVMGSLIKTHL 226
L + P + + + V+ L K L
Sbjct: 378 ---LS------------------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 227 AEK------LGVHPSHIYHVTLMPCYDKK-LEASRADFYNEELGYRDVDCVITAVELEVL 279
EK + + IY + ++ L S D YN +
Sbjct: 417 VEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTF--------------- 459
Query: 280 LANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPV 339
+ D ++ D Y ++ + H ++ + E +
Sbjct: 460 ------------DSDDLIPPYLD----------------QYFYSHIGHHLKNIEHPER-M 490
Query: 340 VEFKPLRNPDIREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGC 399
F+ + F D RF ++ QK++ ++
Sbjct: 491 TLFRMV---------FL--D--FRF--------LE---QKIRHDSTAWN------ASGSI 520
Query: 400 LNGGAQIRN-EKVASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTD 453
LN Q++ + + + E ++ + P+ E+L + K TD
Sbjct: 521 LNTLQQLKFYKPYICDNDP--KYERLVNAILDFLPKIE---ENLICS----KYTD 566
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 32.1 bits (74), Expect = 0.42
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
F+GP +K + + TG I D+
Sbjct: 580 KFVGPGGYNLKKL-QAE-----TGVTISQVDEE 606
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 32.2 bits (74), Expect = 0.42
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGA-YIQETNG 57
+ IGP ++ I I E TGA+I I+DDG YI +G
Sbjct: 611 EVIGPKRQMINQI-QED-----TGAEITIEDDGTIYIGAADG 646
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 31.7 bits (73), Expect = 0.60
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
D IG I+ + E+ TG I I+DDG
Sbjct: 573 DVIGKGGSVIRAL-TEE-----TGTTIEIEDDG 599
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 31.3 bits (72), Expect = 0.88
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
+ IG + I+ I + TGAK+ I DDG
Sbjct: 583 EVIGSGGKVIREI-VAT-----TGAKVDINDDG 609
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 409 EKVASPK-ETALELETILCDLAKSEPRE--NATLE 440
EK A K + +L+L S P AT+E
Sbjct: 18 EKQALKKLQASLKLYA-----DDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 3.7
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 60 EK--LKKVEISLT----D---CLACSGCI 79
EK LKK++ SL D LA +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 28.6 bits (65), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 125 VLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVG 159
L+LGA+ A ++ +V + G+DLVL+V
Sbjct: 166 PLALGAEEAATYAEVPERAKA---WGGLDLVLEVR 197
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.8 bits (63), Expect = 8.5
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 204 ILPYISRVKSP-QQVMGS---L----IKTHLAEKLGVHPSHI 237
+L ++ +P Q V+GS L + +A+ GV +H
Sbjct: 121 LLTDLATQLAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHA 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,182,333
Number of extensions: 434676
Number of successful extensions: 1211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 21
Length of query: 477
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 380
Effective length of database: 3,993,456
Effective search space: 1517513280
Effective search space used: 1517513280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)