RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3876
(477 letters)
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 289 bits (741), Expect = 5e-95
Identities = 104/362 (28%), Positives = 163/362 (45%), Gaps = 16/362 (4%)
Query: 110 NENTKTIVLSLAIQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLVE 168
N K +++++A S+G F + V K+ ++LG D + D+ +++E
Sbjct: 10 NAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIME 69
Query: 169 LENEFLDRFLSGG-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLA 227
E + R + G P+FTS CPGWV AE + E + +S KSPQQ+ G+ KT+
Sbjct: 70 EATELVQRIENNGPFPMFTSCCPGWVRQAENYYPELL-NNLSSAKSPQQIFGTASKTYYP 128
Query: 228 EKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATT 287
G+ P +++ VT+MPC KK EA R + G RD+D VIT EL ++ + A
Sbjct: 129 SISGLDPKNVFTVTVMPCTSKKFEADRPQMEKD--GLRDIDAVITTRELAKMI--KDAKI 184
Query: 288 TLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRN 347
+ +D D E++ +GG L A E +E+K +R
Sbjct: 185 PFAKLEDSEADPAMGEYSGAGA---IFGATGGVMEAALRSAKDFAENAELEDIEYKQVRG 241
Query: 348 PD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQI 406
+ I+EA + + NG N+ ++ Y FIE+MAC GC+NGG Q
Sbjct: 242 LNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQP 301
Query: 407 RN-----EKVASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNT 461
EKV K A L L+K + EN L +Y+ + G + +L+
Sbjct: 302 HVNPKDLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHF 361
Query: 462 SY 463
Y
Sbjct: 362 KY 363
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 275 bits (704), Expect = 3e-90
Identities = 87/303 (28%), Positives = 134/303 (44%), Gaps = 13/303 (4%)
Query: 110 NENTKTIVLSLAIQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLVE 168
+ + A +LG F + V K+ ++LG D ++ E
Sbjct: 10 KDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWE 69
Query: 169 LENEFLDRFLSGGG---PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTH 225
+EF++R P FTS CPGW YAE + E + P+ S KSP + G+L KT+
Sbjct: 70 EGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPELL-PHFSTCKSPIGMNGALAKTY 128
Query: 226 LAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELA 285
AE++ P +Y V++MPC KK E R + + G RD+D +T EL ++ A
Sbjct: 129 GAERMKYDPKQVYTVSIMPCIAKKYEGLRPELKSS--GMRDIDATLTTRELAYMIKK--A 184
Query: 286 TTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPL 345
+ DG D E + +GG L A + + +FK +
Sbjct: 185 GIDFAKLPDGKRDSLMGESTGGATI---FGVTGGVMEAALRFAYEAVTGKKPDSWDFKAV 241
Query: 346 RNPD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGA 404
R D I+EAT G ++ + +G + + + +K + PY FIE MACP GC+ GG
Sbjct: 242 RGLDGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCGGG 301
Query: 405 QIR 407
Q
Sbjct: 302 QPV 304
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 50.5 bits (120), Expect = 3e-07
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 16/137 (11%)
Query: 148 KRLGVDLVLDVGI-AHCFSLVELE-NEFLDRFLSGGGPLFTSECP-----GWVCYAEKSH 200
K V++ + + + P+ P E
Sbjct: 314 KDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGS 373
Query: 201 GEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNE 260
ILP + ++ P Q + +L+ + L + K+ E
Sbjct: 374 NG-ILPDVESLRIPVQYLANLLTAGDTK----PVLRALKRMLAMRHYKRAETVDGKVDTR 428
Query: 261 ELGYRDVDCVITAVELE 277
L + +T + +
Sbjct: 429 AL----EEVGLTEAQAQ 441
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 88
Score = 36.4 bits (84), Expect = 8e-04
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 427 DLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHN 465
++N ++ LYK++L K +L+T + +
Sbjct: 21 KFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHWFD 59
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 31.0 bits (70), Expect = 0.069
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 24 ECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISLTDCLACSGCITSAE 83
E +K + IEK GA +R + D I +K + L +
Sbjct: 17 ETVKIVRIEKARDIPLGATVRNEMDSVIISRI------VKGGAAEKSGLLHEGDEVLEIN 70
Query: 84 SVLITQQSHEEVMKVIRE 101
+ I + EV ++ +
Sbjct: 71 GIEIRGKDVNEVFDLLSD 88
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 29.2 bits (66), Expect = 0.11
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
+ IGP ++ I I + TGA+I I+DDG
Sbjct: 16 EVIGPKRQMINQIQED------TGAEITIEDDG 42
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme
synthetase, C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 47
Score = 28.0 bits (63), Expect = 0.27
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 18 FIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLKKVEISL 69
FI +P+ + G I GA + E +G + EISL
Sbjct: 1 FIN------RPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISL 46
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 28.6 bits (62), Expect = 1.4
Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 13/160 (8%)
Query: 299 WPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFTCG 358
P R + T + Y + + I V + + T
Sbjct: 70 IGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVD 129
Query: 359 DVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEK-------- 410
N+ I L++K++ + A
Sbjct: 130 WANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEP 189
Query: 411 --VASPKETALELETILCDLAKSEPRENATLEHLYKAWLG 448
+ + L +TI ++ + + + WLG
Sbjct: 190 YGFVLKENSPL-QKTI--NVEMLNLLYSRVIAEFTERWLG 226
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 297
Score = 28.7 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 208 ISRVKSPQQVMGSLIKTHLAEKLGVHP--SHIYHVTLMPC 245
IS VK+ +V +IK + AE L P H Y +PC
Sbjct: 258 ISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFSEFLPC 297
>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
glutarylamidase [TaxId: 306]}
Length = 674
Score = 28.3 bits (62), Expect = 2.4
Identities = 23/160 (14%), Positives = 41/160 (25%), Gaps = 9/160 (5%)
Query: 169 LENEFLDRFLSGGGPLFTSECPGWVCYAEKSHGEFILPY-ISRVKSPQQVMGSLIKTHLA 227
L + R +S L + LP I LA
Sbjct: 426 LRAQQSVRLMSENDDLTLERFMALQLSHRAVMADRTLPDLIPAALIDPDPEVQAAARLLA 485
Query: 228 EKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATT 287
S L + + + +F + + + A
Sbjct: 486 AWDREFTSDSRAALLFEEWARLF--AGQNFAGQAGFATPWSLDKPVSTPYGVRDPKAAVD 543
Query: 288 TLQ------EEKDGILDWPWDEHNPHRMLLVNGTGSGGYA 321
L+ + K G +D P+ + + + VN G+ GY
Sbjct: 544 QLRTAIANTKRKYGAIDRPFGDASRMILNDVNVPGAAGYG 583
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 87
Score = 26.2 bits (58), Expect = 2.6
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 222 IKTHLAEKLGVHPSHIYHVTLMPCYDKKLEA 252
I + AEK + +Y P K A
Sbjct: 22 ILRYCAEKFQIPLEELYKTIAWPLSRKFGHA 52
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 26.5 bits (58), Expect = 3.2
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 20 GPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKL--KKVE----ISLTDCL 73
G S ++ + I+K G R G IR G + +E + KV L
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 74 ACSGCITSAESVLITQQSHEEVMKVIRE 101
+ + +H E ++++R
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRS 91
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 25.5 bits (56), Expect = 5.5
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 17 DFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDG 49
IG IK + + +I + +G
Sbjct: 14 RVIGKKGSMIKLL-KSE-----LDVQIVVGQNG 40
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 26.8 bits (58), Expect = 6.4
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 38 RTGAKIRIQDDGAYIQETNGREEKLKKVEISLTD-----CLACSGCITSAESVL 86
R GA I+ + EKL ++ TD L +GCI +V+
Sbjct: 340 RMGAHAEIESNTVICHGV----EKLSGAQVMATDLRASASLVLAGCIAEGTTVV 389
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 26.3 bits (57), Expect = 6.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 223 KTHLAEKLGVHPSHIYHVTLM 243
K LA+K G I +T+
Sbjct: 10 KAQLAKKTGTGVDRIRRMTVW 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,761,815
Number of extensions: 83571
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 19
Length of query: 477
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 388
Effective length of database: 1,185,626
Effective search space: 460022888
Effective search space used: 460022888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)