BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3877
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 99/134 (73%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+ LMQLFSD K D L LGL+FQ+RDDY NL SKEYSENKSFCEDLTEGKFSFP
Sbjct: 159 LAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI SRP+ QV ILRQRT ++++KKYC+ L+ GSFE+TR LKEL+ A ++
Sbjct: 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDA 278
Query: 122 LGGNPLLEAILDEL 135
GGNP L A++ L
Sbjct: 279 RGGNPELVALVKHL 292
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 2 MAIRLMQLFSDTKSDFTTLA---GILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFS 58
+ +RLM+ S + +L +LG+ +Q+RDDY NL + S K F ED+TEGK S
Sbjct: 181 LTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLS 240
Query: 59 FPIIHAIQ------SRPDDRQVIQILRQRTRDVEVKKYCISLLD-RFGSFEHTREVLKEL 111
FPI+HA+ ++++IL RT D ++K I +L+ S +T+ + +L
Sbjct: 241 FPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQL 300
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-----QSRPDDRQVIQIL 78
LG+ FQ+ DD + K K+ +D E K + P+I A+ R ++VI+
Sbjct: 212 LGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKG 271
Query: 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDEL 135
Q+ D+E + ++L+ + G+ E TR +AR +A+L +PL + +LD+L
Sbjct: 272 DQQDGDLE---HAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQ-MLDDL 324
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
+G+ FQ+ DD ++ S+ + K+ DL EG F+ P+++A+ + P ++ IL
Sbjct: 232 VGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPL 291
Query: 83 RDVEVKKYCISLLDRFGSFEHT-REVLKELDVSARTEVARLGGNPLLEAI 131
D E + + LL + G + EV + +D+ A E+ RL + + EA+
Sbjct: 292 EDDETVNHVLELLSQSGGRQAALDEVYRYMDI-ANAELDRLPDSTVKEAL 340
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + S K D+ G + PI+ A++ P R+V+ + + R
Sbjct: 226 LGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPR 285
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP 126
+V++ + L + + RE+ E A A +G P
Sbjct: 286 NVDI---ALEYLGKSKGIQRARELAME---HANLAAAAIGSLP 322
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + S K D+ G + PI+ A++ P R+V+ + R
Sbjct: 226 LGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVAADPR 285
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP 126
+V++ + L + + RE+ E A A +G P
Sbjct: 286 NVDI---ALEYLGKSKGIQRARELAME---HANLAAAAIGSLP 322
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS--RPDDRQVIQILRQ- 80
+G+ +Q+ DD + S E + K D+ G ++P++ AI + DD ++ +++
Sbjct: 203 IGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHL 262
Query: 81 -RTRDVEVKKYCISLLDRFG 99
T D EV +Y +S + ++G
Sbjct: 263 TSTSDDEVYQYIVSQVKQYG 282
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS--RPDDRQVIQILRQR 81
+G+ FQ+ DD +L + E K D+ +GK + + H ++ D ++ ++I +
Sbjct: 210 VGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKY 269
Query: 82 TRDVEVKKY-----------CISLLDRFGSFEHTREVLKEL 111
DV+ + I LL ++GS ++ E+ K++
Sbjct: 270 AGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDM 310
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MAIRLMQLF-SDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+A++L L + D L +G +Q+ DD + E F DL G SFP
Sbjct: 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFL-DLKNGVASFP 231
Query: 61 IIHAIQSRPDDRQVIQ 76
++ A++ P+ RQ+ +
Sbjct: 232 LVTAMEKFPEARQMFE 247
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI 65
LGL FQ+ DD + + K+ +D EGK + P++ AI
Sbjct: 224 LGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 10 FSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSR- 68
++ +F AG+ FQ+ DD ++ K +D+ E K ++ S
Sbjct: 206 LAEAAWNFGMAAGVA---FQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL 262
Query: 69 --PDDRQVIQIL-RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGN 125
+ R++++IL R+ + +V++ ++LLD G+ E + A +A++ N
Sbjct: 263 GEGERRRLLEILAREVVEEADVRE-AVALLDSVGAREEALRLAARYREEAERHLAKIPNN 321
Query: 126 PLLEAILD 133
L+ +LD
Sbjct: 322 GTLKELLD 329
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 20 LAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ--SRPDDRQVIQI 77
++ ++G YFQ+ DDY ++ ++ D+ K ++P+I + S PD ++++
Sbjct: 275 ISMLMGEYFQIHDDYLDIFGDS-TKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVK- 332
Query: 78 LRQRTRDVEVKKYCISLLDRF---GSFEHTREVLKELDVSARTEVARLGGNPLLEAILDE 134
++ K SL +++ +E + K +SA E+ G +L+ +L+
Sbjct: 333 -NYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEI 391
Query: 135 LLT 137
L T
Sbjct: 392 LFT 394
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 20 LAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ--SRPDDRQVIQI 77
++ ++G YFQ+ DDY ++ ++ D+ K ++P+I + S PD ++++
Sbjct: 274 ISMLMGEYFQIHDDYLDIFGDS-TKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVK- 331
Query: 78 LRQRTRDVEVKKYCISLLDRF---GSFEHTREVLKELDVSARTEVARLGGNPLLEAILDE 134
++ K SL +++ +E + K +SA E+ G +L+ +L+
Sbjct: 332 -NYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEI 390
Query: 135 LLT 137
L T
Sbjct: 391 LFT 393
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
+GL FQV+DD ++ + K D GK ++P + + Q+R R +I RQ
Sbjct: 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSL 274
Query: 83 RDVEVKKYCISLLDRFGSF 101
+ + + S L+ +
Sbjct: 275 KQLAEQSLDTSALEALADY 293
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
+GL FQV+DD ++ + K D GK ++P + + Q+R R +I RQ
Sbjct: 216 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSL 275
Query: 83 RDVEVKKYCISLLDRFGSF 101
+ + + S L+ +
Sbjct: 276 KQLAEQSLDTSALEALADY 294
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
+GL FQV+DD ++ + K D GK ++P + + Q+R R +I RQ
Sbjct: 239 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQAL 298
Query: 83 RDVEVKKYCISLLDRFGSF 101
+ + + S L+ +
Sbjct: 299 KQLAEQSLDTSALEALADY 317
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 12 DTKSDFTTLAGIL---GLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS- 67
D+K + IL G YFQ++DDY + C + + + D+ + K S+ ++ +Q
Sbjct: 234 DSKEEHENAKAILLEMGEYFQIQDDYLD-CFGDPALTGAVGTDIQDNKCSWLVVQCLQRV 292
Query: 68 RPDDRQVIQ 76
P+ RQ+++
Sbjct: 293 TPEQRQLLE 301
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 17 FTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD 70
T A GL FQ+RDD + S E K D K ++P + I D
Sbjct: 211 LTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKD 264
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 12 DTKSDFTTLAGIL---GLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS- 67
D+K + IL G YFQ++DDY + C + + D+ + K S+ ++ +Q
Sbjct: 234 DSKEEHENAKAILLEMGEYFQIQDDYLD-CFGDPALTGKVGTDIQDNKCSWLVVQCLQRV 292
Query: 68 RPDDRQVIQ 76
P+ RQ+++
Sbjct: 293 TPEQRQLLE 301
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 12 DTKSDFTTLAGIL---GLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS- 67
D+K + IL G YFQ++DDY + C + + D+ + K S+ ++ +Q
Sbjct: 215 DSKEEHENAKAILLEMGEYFQIQDDYLD-CFGDPALTGKVGTDIQDNKCSWLVVQCLQRV 273
Query: 68 RPDDRQVIQ 76
P+ RQ+++
Sbjct: 274 TPEQRQLLE 282
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 1 MMAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
M A+ Q+ + + A +GL FQV+DD +L S + K+ D K ++P
Sbjct: 191 MGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYP 250
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 9 LFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSF 59
L + T A LGL FQ+ DD ++ E + K +D K +F
Sbjct: 194 LAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATF 244
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 9 LFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSF 59
L + T A LGL FQ+ DD ++ E + K +D K +F
Sbjct: 193 LAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATF 243
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 17 FTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
+ A GL FQ+ DD ++ S K+ +D E K ++P
Sbjct: 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYP 253
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPII 62
LGL FQ DD + + K DL + K S P++
Sbjct: 216 LGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVV 254
>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
pdb|4DOO|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
Length = 205
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 30 VRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
V D Y NL + E NKSF +DL E I
Sbjct: 58 VGDKYANLPASEIRGNKSFMDDLMEADIKMTI 89
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP--IIHAIQSRPDDRQVIQILRQR 81
G+ FQ+ DD ++ + K D EGK + P +++ ++ D +I +Q
Sbjct: 192 FGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD 251
Query: 82 TRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGG--NPLLEAILDELLT 137
+ E+ ++ ++G E T LK V ++ + + G N +LE + ++++
Sbjct: 252 SH--EIIEWTKEKFKQYGIIEET---LKTAQVYSKKALEAIKGENNLILEKLAQDVIS 304
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 14 KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPII 62
KS T +GL FQ++DDY +L + K D K +F +
Sbjct: 212 KSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATL 260
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 54 EGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVE---VKKYCISLLDRFGSFEHTREVLKE 110
EG + +HA +++ + +++I I RQ R ++ K L F H +K
Sbjct: 102 EGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKI 161
Query: 111 LDVSARTEVARLGGNPLLEAILDELLTWDTPD 142
D TE +R G+ E + +L W P+
Sbjct: 162 GDFGLATEKSRWSGSHQFEQLSGSIL-WMAPE 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 13 TKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCED--LTEGKFSFPIIHAIQSRPD 70
TK + L + G VR D+ EN ++ E +T G+F +IH Q P
Sbjct: 42 TKESYDYLKTLAGDVHIVRGDF--------DENLNYPEQKVVTVGQFKIGLIHGHQVIPW 93
Query: 71 DRQVIQILRQRTRDVEVKKYCISLLDRFGSFEH 103
L QR DV++ +F +FEH
Sbjct: 94 GDMASLALLQRQFDVDI--LISGHTHKFEAFEH 124
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 54 EGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVE---VKKYCISLLDRFGSFEHTREVLKE 110
EG + +HA +++ + +++I I RQ R ++ K L F H +K
Sbjct: 102 EGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKI 161
Query: 111 LDVSARTEVARLGGNPLLEAILDELLTWDTPD 142
D TE +R G+ E + +L W P+
Sbjct: 162 GDFGLATEKSRWSGSHQFEQLSGSIL-WMAPE 192
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 13 TKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCED--LTEGKFSFPIIHAIQSRPD 70
TK + L + G VR D+ EN ++ E +T G+F +IH Q P
Sbjct: 52 TKESYDYLKTLAGDVHIVRGDF--------DENLNYPEQKVVTVGQFKIGLIHGHQVIPW 103
Query: 71 DRQVIQILRQRTRDVEVKKYCISLLDRFGSFEH 103
L QR DV++ +F +FEH
Sbjct: 104 GDMASLALLQRQFDVDI--LISGHTHKFEAFEH 134
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 232 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 284
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 237 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 289
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 231 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 283
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 238 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 290
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 21 AGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
A +GL FQV DD ++ K+ +DL K ++P
Sbjct: 210 ANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYP 249
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 260 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 312
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 258 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 310
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 256 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 308
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 257 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 309
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ Q+++
Sbjct: 256 MGEFFQIQDDYLDLFGDP-SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILK 308
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 13 TKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCED--LTEGKFSFPIIHAIQSRPD 70
TK + L + G VR D+ EN ++ E +T G+F +IH Q P
Sbjct: 43 TKESYDYLKTLAGDVHIVRGDF--------DENLNYPEQKVVTVGQFKIGLIHGHQVIPW 94
Query: 71 DRQVIQILRQRTRDVEVKKYCISLLDRFGSFEH 103
L QR DV++ +F +FEH
Sbjct: 95 GDXASLALLQRQFDVDI--LISGHTHKFEAFEH 125
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 1 MMAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSF 59
M A + + TK + + LG+ FQ++DD + E K DL K ++
Sbjct: 187 MSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTY 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,198,952
Number of Sequences: 62578
Number of extensions: 155964
Number of successful extensions: 489
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 62
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)