BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3877
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95749|GGPPS_HUMAN Geranylgeranyl pyrophosphate synthase OS=Homo sapiens GN=GGPS1 PE=1
SV=1
Length = 300
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 99/134 (73%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+ LMQLFSD K D L LGL+FQ+RDDY NL SKEYSENKSFCEDLTEGKFSFP
Sbjct: 158 LAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI SRP+ QV ILRQRT ++++KKYC+ L+ GSFE+TR LKEL+ A ++
Sbjct: 218 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDA 277
Query: 122 LGGNPLLEAILDEL 135
GGNP L A++ L
Sbjct: 278 RGGNPELVALVKHL 291
>sp|P56966|GGPPS_BOVIN Geranylgeranyl pyrophosphate synthase OS=Bos taurus GN=GGPS1 PE=1
SV=2
Length = 300
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 99/134 (73%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+ LMQLFSD K D L LGL+FQ+RDDY NL SKEYSENKSFCEDLTEGKFSFP
Sbjct: 158 LAVGLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI SRP+ QV ILRQRT ++++KKYC+ L+ GSFE+TR LKEL+ A ++
Sbjct: 218 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLENVGSFEYTRNTLKELESKAYKQIDA 277
Query: 122 LGGNPLLEAILDEL 135
GGNP L A++ L
Sbjct: 278 RGGNPELVALIKHL 291
>sp|Q6F596|GGPPS_RAT Geranylgeranyl pyrophosphate synthase OS=Rattus norvegicus GN=Ggps1
PE=2 SV=1
Length = 300
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 99/134 (73%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+ LMQLFSD K D L LGL+FQ+RDDY NL SKEYSENKSFCEDLTEGKFSFP
Sbjct: 158 LAVGLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI SRP+ QV ILRQRT ++++KKYC+ L+ GSFE+TR L+EL+ A ++
Sbjct: 218 IHAIWSRPESTQVQNILRQRTENIDIKKYCVQYLEDVGSFEYTRYTLRELEAKAYKQIEA 277
Query: 122 LGGNPLLEAILDEL 135
GGNP L A++ L
Sbjct: 278 CGGNPSLVALVKHL 291
>sp|Q9WTN0|GGPPS_MOUSE Geranylgeranyl pyrophosphate synthase OS=Mus musculus GN=Ggps1 PE=2
SV=1
Length = 300
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 98/134 (73%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+ LMQLFSD K D L LGL+FQ+RDDY NL SKEYSENKSFCEDLTEGKFSFP
Sbjct: 158 LAVGLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 217
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI SRP+ QV ILRQRT ++++KKYC+ L+ GSF +TR L+EL+ A ++
Sbjct: 218 IHAIWSRPESTQVQNILRQRTENIDIKKYCVQYLEDVGSFAYTRHTLRELEAKAYKQIEA 277
Query: 122 LGGNPLLEAILDEL 135
GGNP L A++ L
Sbjct: 278 CGGNPSLVALVKHL 291
>sp|Q9P885|GGPPS_MUCCL Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f.
lusitanicus GN=carG PE=1 SV=1
Length = 303
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 100/141 (70%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+A+RLMQ S++ D+T L I+G++FQVRDDY NL S Y+ NK FCEDLTEGKFSFPI
Sbjct: 163 LAVRLMQAASESDIDYTPLVNIIGIHFQVRDDYMNLQSTSYTNNKGFCEDLTEGKFSFPI 222
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
IHAI+ P +RQ++ I+ Q+ +EVKKY + ++ + GSFE+ RE L++ + + E+ R
Sbjct: 223 IHAIRKDPSNRQLLNIISQKPTSIEVKKYALEVIRKAGSFEYVREFLRQKEAESLKEIKR 282
Query: 122 LGGNPLLEAILDELLTWDTPD 142
LGGNPLLE ++ + T D
Sbjct: 283 LGGNPLLEKYIETIRVEATND 303
>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi
GN=GGS PE=3 SV=1
Length = 418
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 2 MAIRLMQLFSDTKS--DFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSF 59
+ I+LM ++ S D L ++GL FQ+RDDY NL SKEYS NK CEDLTEGKFSF
Sbjct: 276 LGIKLMAAEANGPSPTDCVPLVNLIGLIFQIRDDYMNLSSKEYSHNKGMCEDLTEGKFSF 335
Query: 60 PIIHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEV 119
P+IH+I++ P + Q+I IL+Q+T D ++K+Y ++ ++ GSFE+TR+VL L AR
Sbjct: 336 PVIHSIRTNPTNLQLINILKQKTSDTQIKRYAVAYMESTGSFEYTRKVLSVLIERARKMA 395
Query: 120 ARL----GGNPLLEAILDEL 135
L G ++ ILD++
Sbjct: 396 EELDQGRGSTKGIQKILDKM 415
>sp|B2DBE9|GGS4_PHOAM Geranylgeranyl pyrophosphate synthase D OS=Phomopsis amygdali
GN=GGS-D PE=1 SV=1
Length = 424
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 89/124 (71%), Gaps = 3/124 (2%)
Query: 2 MAIRLMQLFSDTKSDFTT---LAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFS 58
MA++LMQ S L +LGL +Q+ DDY NL + EY+ +K FCEDLTEGKFS
Sbjct: 281 MAVKLMQAESPAGPMAPVCDKLVQLLGLVYQIADDYKNLTAVEYTTSKGFCEDLTEGKFS 340
Query: 59 FPIIHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTE 118
FP++H+IQSRP+DR++ QIL Q+T +VEVKKY +S ++ GS E+T++V++ L AR E
Sbjct: 341 FPVVHSIQSRPEDRRLYQILAQKTTEVEVKKYAVSYIESTGSLEYTKQVVRVLVQRARDE 400
Query: 119 VARL 122
++R+
Sbjct: 401 LSRI 404
>sp|P24322|GGPPS_NEUCR Geranylgeranyl pyrophosphate synthase OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=al-3 PE=2 SV=2
Length = 433
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 83/115 (72%)
Query: 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPI 61
+ I+LMQ S + D L I+GL FQ+ DDY NL ++EY+ NK CEDLTEGKFSFP+
Sbjct: 280 LGIKLMQAESRSPVDCVPLVNIIGLIFQIADDYHNLWNREYTANKGMCEDLTEGKFSFPV 339
Query: 62 IHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSAR 116
IH+I+S P + Q++ IL+Q+T D EVK+Y ++ ++ GSFE+TR+V+K L AR
Sbjct: 340 IHSIRSNPSNMQLLNILKQKTGDEEVKRYAVAYMESTGSFEYTRKVIKVLVDRAR 394
>sp|Q54BK1|GGPPS_DICDI Geranylgeranyl pyrophosphate synthase OS=Dictyostelium discoideum
GN=ggps1 PE=3 SV=1
Length = 303
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 86/128 (67%)
Query: 8 QLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS 67
Q FSD +++ L LG+Y+Q+RDD NL S +Y +NKSFCED++EGKFSFPIIHAI +
Sbjct: 171 QAFSDNNTNYIDLVEDLGMYYQIRDDLINLVSVDYQQNKSFCEDISEGKFSFPIIHAINA 230
Query: 68 RPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPL 127
+D ++++IL+Q+T D VK++ + + GS E+T + L L ++ LGGNP+
Sbjct: 231 DSNDNRLLRILKQKTEDRSVKEHALEYIKSKGSLEYTEKKLNVLKEKIIKQINDLGGNPI 290
Query: 128 LEAILDEL 135
L +++ L
Sbjct: 291 LMKLMESL 298
>sp|Q758K0|GGPPS_ASHGO Geranylgeranyl pyrophosphate synthase OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=BTS1 PE=3 SV=1
Length = 320
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 2 MAIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKF 57
+ +R+M+ + S L+ +LG+ +QVRDDY NL SENK F +D+TEGKF
Sbjct: 175 LTVRIMEALREGPDGPGSTLVPLSNLLGVLYQVRDDYLNLTDSRMSENKGFADDITEGKF 234
Query: 58 SFPIIHAIQ-SRPDDRQ----VIQILRQRTRDVEVKKYCISLL-DRFGSFEHTREVLKEL 111
S+PIIH +Q +R D ++ +LRQRT D+ K+ + L D GS +T++ + EL
Sbjct: 235 SYPIIHGLQYARVHDPAGYDFLVSVLRQRTTDITTKRRVVRYLADVSGSLAYTKQRIIEL 294
Query: 112 DVSARTEVARLGGNPLLEAI 131
+T+ G L I
Sbjct: 295 ATLIKTKYIPASGTELCNVI 314
>sp|A2PZA5|FUSS_PHOAM Fusicoccadiene synthase OS=Phomopsis amygdali GN=PaFS PE=1 SV=1
Length = 719
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 20 LAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQIL- 78
L +LG FQ+RDDY NL S +Y++ K FCEDL EGK+S +IH I + ++ +L
Sbjct: 593 LTRLLGRCFQIRDDYQNLVSADYTKQKGFCEDLDEGKWSLALIHMIHKQRSHMALLNVLS 652
Query: 79 ---RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARL-----GGNPLLEA 130
+ +E K++ + +++ S ++TR V+ +L V R E+ R+ NP +
Sbjct: 653 TGRKHGGMTLEQKQFVLDIIEEEKSLDYTRSVMMDLHVQLRAEIGRIEILLDSPNPAMRL 712
Query: 131 ILDEL 135
+L+ L
Sbjct: 713 LLELL 717
>sp|B2DBE8|GGS1_PHOAM Geranylgeranyl pyrophosphate synthase A OS=Phomopsis amygdali
GN=GGS-A PE=1 SV=1
Length = 389
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 10/120 (8%)
Query: 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKF 57
MA +LM S++ +D L +LG YFQ+RDDY NL S+EY+++K FCEDL EGK+
Sbjct: 232 MASKLMIAQSESSNMNPTDLDALMTLLGRYFQIRDDYMNLTSQEYTKSKGFCEDLDEGKY 291
Query: 58 SFPIIHAIQSRPDDRQVI---QILRQRTRDVEV---KKYCISLLDRFGSFEHTREVLKEL 111
S +IHA+++ +V+ +L +R K+ +S++ + GS ++ E+L L
Sbjct: 292 SLIMIHALENCDHKSRVLLDSMLLERRATGAAGLGHKELILSMMQQTGSLQYAVEILSVL 351
>sp|Q12051|GGPPS_YEAST Geranylgeranyl pyrophosphate synthase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BTS1 PE=1 SV=1
Length = 335
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 2 MAIRLMQLFSDTKSDFTTLA---GILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFS 58
+ +RLM+ S + +L +LG+ +Q+RDDY NL + S K F ED+TEGK S
Sbjct: 176 LTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLS 235
Query: 59 FPIIHAIQ------SRPDDRQVIQILRQRTRDVEVKKYCISLLD-RFGSFEHTREVLKEL 111
FPI+HA+ ++++IL RT D ++K I +L+ S +T+ + +L
Sbjct: 236 FPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQL 295
>sp|C9K2Q3|FUSS_ALTBR Fusicoccadiene synthase OS=Alternaria brassicicola GN=bsc8 PE=1
SV=1
Length = 697
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 2 MAIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKF 57
+A RLM L S S + +LG +FQ+RDDY NL S EY++ K FC+DL G +
Sbjct: 549 LASRLMCLCSTATVVPNSSLSRFCILLGRFFQIRDDYQNLTSPEYTKQKGFCDDLDSGTY 608
Query: 58 SFPIIHAIQSRPDDRQVIQILRQR----TRDVEVKKYCISLLDRFGSFEHTREVLKELDV 113
+ P+++AI + ++ + +L R T D + K+ + + + E R++L L
Sbjct: 609 TLPLVYAISQQSENFLLQNLLSTRLAEGTLDDDQKRLALDQMQLVKTNEFLRKILDSLYD 668
Query: 114 SARTEV 119
R E+
Sbjct: 669 ELRAEL 674
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ--SRPDDRQVIQILRQR 81
+GL FQ+ DDY ++ S E S K D+ EGK + ++ A++ S D ++I IL
Sbjct: 206 IGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERASEKDRERLISIL--G 263
Query: 82 TRDVEVKKYCISLLDRFGSFEHTREV 107
+ D ++ I + +R+G+ E+ V
Sbjct: 264 SGDEKLVAEAIEIFERYGATEYAHAV 289
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ--SRPDDRQVIQILRQR 81
+GL FQ+ DDY ++ S E S K D+ EGK + ++ A++ S D ++I IL
Sbjct: 206 IGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEASEEDRERLISIL--G 263
Query: 82 TRDVEVKKYCISLLDRFGSFEHTREV 107
+ D I + +R+G+ ++ EV
Sbjct: 264 SGDEGSVAEAIEIFERYGATQYAHEV 289
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQ--VIQIL-RQ 80
+GL FQ++DD +L + K D+ EGK + +IHA+++ +D++ +++IL +
Sbjct: 209 IGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILGNK 268
Query: 81 RTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVAR 121
+D E+K+ I +L S E+ +E++K+ +TE A+
Sbjct: 269 NVKDEEIKE-AIEILK--PSIEYAKELMKQ-----KTEEAK 301
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQV DD + K DL +G + P+I A+Q P R++I T
Sbjct: 256 LGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETN 315
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKE 110
+ I L+ R G + E+ +E
Sbjct: 316 SLAT---AIELVHRSGGIKRAHELARE 339
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
LG FQ+ DD + + K+ +DL EGK + P++HA+ P+ Q+I+ ++
Sbjct: 203 LGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG 262
Query: 83 RDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAIL 132
+ + + ++ GS E TR+ +E A + L P EA++
Sbjct: 263 NGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALI 312
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
LG FQ+ DD + + K+ +DL EGK + P++HA+ P+ Q+I+ ++
Sbjct: 203 LGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG 262
Query: 83 RDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAIL 132
+ + + ++ GS E TR+ +E A + L P EA++
Sbjct: 263 NGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALI 312
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + S K C DL +G + P++ A++ + +IQ +
Sbjct: 207 LGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSELIPLIQRQFSEPK 266
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKE 110
D E Y + +++ + E TRE+ E
Sbjct: 267 DFE---YTLQIVEETKAIEKTRELAME 290
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQV DD + K DL +G + P+I A+Q P R++I
Sbjct: 287 LGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIID---SEFS 343
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKE 110
+ + I L+ R G +E+ KE
Sbjct: 344 ESDSLATAIDLVHRSGGIRRAQELAKE 370
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + S K D+ G + PI+ A++ P R+V+ + + R
Sbjct: 300 LGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPR 359
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP 126
+V++ + L + + RE+ E A A +G P
Sbjct: 360 NVDI---ALEYLGKSKGIQRARELAME---HANLAAAAIGSLP 396
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76
LGL FQV DD + K DL +G + P+I A+++ P R++I+
Sbjct: 301 LGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLREIIE 353
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS--RPDDRQVIQILRQ- 80
+G+ +Q+ DD + S E + K D+ G ++P++ AI + DD ++ +++
Sbjct: 203 IGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHL 262
Query: 81 -RTRDVEVKKYCISLLDRFG 99
T D EV +Y +S + ++G
Sbjct: 263 TSTSDDEVYQYIVSQVKQYG 282
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQ 80
LG FQ+ DD + + + K+ +DL EGK + P++HA+ R + Q ++R+
Sbjct: 209 LGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAM--RHGNAQQAALIRE 263
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76
LGL FQ+ DD + K DL +G + P+I A++ P R++I+
Sbjct: 290 LGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEREPRLREIIE 342
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 3 AIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPII 62
A L L S +D +GL FQ+ DD ++ S K D G + PI+
Sbjct: 186 AAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPIL 245
Query: 63 HAIQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKE 110
A+ Q+IQ RD+ + + L+ + G +++ KE
Sbjct: 246 FALTQEGKLDQLIQREFSDERDISLALF---LIKKSGGITKAKDLAKE 290
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 21 AGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS 67
AG G FQ+ DD + S + K+ +DL EGK + P+I A+Q+
Sbjct: 203 AGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQN 249
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 25 GLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTRD 84
G+ FQ+RDD + K DL GK + +I+A++ + R+++ ++ + +
Sbjct: 200 GIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVK-KAGRREIVDLIGPKASE 258
Query: 85 VEVKKYCISLLD 96
++K+ ++D
Sbjct: 259 DDLKRAASIIVD 270
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + S K D+ G + P+++A++ P +V+
Sbjct: 308 LGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAMEEFPQLHEVVDRGFDNPA 367
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKE 110
+VE+ + L + E T+E+ +E
Sbjct: 368 NVEL---ALDYLQKSRGIEKTKELARE 391
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQ+ DD + K+ DLT G + P+++A Q P ++I+
Sbjct: 340 LGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQLEKLIKRKFSEIG 399
Query: 84 DVEVKKYCISL 94
DVE K ++L
Sbjct: 400 DVEEAKRLVAL 410
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 23 ILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ 66
++G+ FQ+ DD ++ + E K DL EGK++ +I+A +
Sbjct: 208 LIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAFE 251
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQS 67
+G+ +Q+ DD + S E K DL +G + P+++A+++
Sbjct: 231 VGMSYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPVLYALKN 274
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI 65
+G+ FQ+ DD + E K DL +G + P+++A+
Sbjct: 203 VGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYAL 244
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
LGL FQV DD + E K DL G + P++ A + P+ +I+
Sbjct: 336 LGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKRKFDGPG 395
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKE 110
DVE ++ + D TRE+ ++
Sbjct: 396 DVERARFLVQQAD---GLSRTRELAQK 419
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 4 IRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIH 63
+RLM SDF T LG+ FQ+ DD L + E K D+ EGK + +I
Sbjct: 198 VRLM-------SDFGT---NLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKTILVIK 247
Query: 64 AIQ-SRPDDRQVI 75
++ + D+++++
Sbjct: 248 TLELCKEDEKKIV 260
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
+G FQ++DD +L + K DL E K + +HA R V ++
Sbjct: 226 IGRAFQIQDDLLDLTAPSDELGKQRGSDLVENKRTVITLHA---RDQGIDVEGLVSDDPS 282
Query: 84 DVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP---LLEAILDELL 136
D E++ + L+ GS + RE+ +L S + + L N LLE I D L+
Sbjct: 283 DAEIEA-AVQTLEDAGSIDFAREMALDLVTSGKERLDVLPENEARQLLEDIADFLV 337
>sp|Q32RY3|RPOC1_STAPU DNA-directed RNA polymerase subunit beta' OS=Staurastrum
punctulatum GN=rpoC1 PE=3 SV=1
Length = 834
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 8 QLFSDTKSDFTTLAGILGLYFQVRDD----YCNLCSKEYSENKSFCEDLTEGKFSFPIIH 63
++F KS F + G Y RD+ +C C E +E++ + + S P+ H
Sbjct: 91 RIFGPIKSGFCSC----GKYKGTRDNDSPPFCEQCGVELTESRVRRHRMGYIQLSSPVTH 146
Query: 64 A--IQSRPDDRQVIQILRQRTRDVEVKKYCISLLDRFGSFEHTR 105
+++RP + +L +DVE YC S + G++ R
Sbjct: 147 VWYLKNRPS--VISHLLEMPLKDVESLVYCGSFIIGPGTYSKFR 188
>sp|Q9NVN8|GNL3L_HUMAN Guanine nucleotide-binding protein-like 3-like protein OS=Homo
sapiens GN=GNL3L PE=1 SV=1
Length = 582
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDV 113
RQ+ R +E YC +L R FEH EVL+EL++
Sbjct: 79 RQKRRTIE--SYCQDVLRRQEEFEHKEEVLQELNM 111
>sp|Q8WMY2|FPPS_BOVIN Farnesyl pyrophosphate synthase OS=Bos taurus GN=FDPS PE=1 SV=1
Length = 353
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ-SRPDDRQVIQ 76
+G +FQ++DDY +L S D+ + K S+ ++ +Q + P+ RQ++Q
Sbjct: 235 MGEFFQIQDDYLDLFGDP-SMTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQ 287
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP 69
LGL FQ+ DD + S K DL G + P + A++ P
Sbjct: 207 LGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYP 252
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAI-QSRPDDRQVIQILRQRT 82
+GL FQV+DD ++ + K D GK ++P + + Q+R R +I RQ
Sbjct: 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSL 274
Query: 83 RDVEVKKYCISLLDRFGSF 101
+ + + S L+ +
Sbjct: 275 KQLAEQSLDTSALEALADY 293
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQ 66
+GL FQV DD ++ K+ +DL GK ++P + ++
Sbjct: 262 IGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMGVE 304
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 24 LGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTR 83
+GL FQV DD ++ K+ +D+ GK ++P + ++ R+V + LR+
Sbjct: 278 IGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLEG---SREVAEKLRREAE 334
Query: 84 D 84
+
Sbjct: 335 E 335
>sp|Q06FN6|RPAL3_PELHO Putative DNA-directed RNA polymerase subunit alpha-like 3
OS=Pelargonium hortorum GN=rpoAL3-A PE=5 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 36 NLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVI-----QILRQRTRDVEVKKY 90
N +Y E K F +D G+F+ + A +SR + + +IL R +++
Sbjct: 15 NFADWDYVECKYFHKDFAYGRFALSPLTAKESRLLKKGLFEALLTEILCLRFTHAKIQNE 74
Query: 91 CISLLDRFGSFEHTREVLKELD---VSARTEVARLGGNPLLEAILD 133
C++L++ G E E+LK ++ + E +G P + AILD
Sbjct: 75 CVNLMNIVGIQESLDEILKNFGKIILTGKLE-EFVGKGPFV-AILD 118
>sp|Q3T0J9|GNL3L_BOVIN Guanine nucleotide-binding protein-like 3-like protein OS=Bos
taurus GN=GNL3L PE=2 SV=1
Length = 575
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDV 113
R R R +E YC +L R FEH EVL+EL++
Sbjct: 72 RHRRRTIE--SYCQDVLRRQEEFEHKEEVLQELNM 104
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 15 SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQV 74
S F LGL FQ+ DD ++ S + K DL G + P++ A+ ++
Sbjct: 198 SKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFALTKNSKLFKI 257
Query: 75 IQ 76
I+
Sbjct: 258 IE 259
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 17 FTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFP 60
F A +GL FQ+ DD ++ S E KS +DL K ++P
Sbjct: 212 FLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYP 255
>sp|Q2NJ16|RPOC_AYWBP DNA-directed RNA polymerase subunit beta' OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=rpoC PE=3
SV=1
Length = 1353
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 30 VRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVEVKK 89
++ +CN C E++E K E + + PI+H ++ +L +T+ +E
Sbjct: 198 IKSQFCNKCGVEFTETKVRRERMGHIELQTPIVHTWYLNSSPSRLAILLNIKTKQLEEIV 257
Query: 90 YCIS 93
Y +S
Sbjct: 258 YYVS 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,215,471
Number of Sequences: 539616
Number of extensions: 2020495
Number of successful extensions: 5544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 5494
Number of HSP's gapped (non-prelim): 67
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)