Query psy3877
Match_columns 145
No_of_seqs 190 out of 1142
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:41:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q80_A Geranylgeranyl pyrophos 100.0 2.2E-31 7.5E-36 210.5 13.1 142 2-143 159-300 (301)
2 3mzv_A Decaprenyl diphosphate 100.0 8.5E-31 2.9E-35 210.2 14.3 140 2-142 186-331 (341)
3 3lmd_A Geranylgeranyl pyrophos 100.0 1.3E-30 4.4E-35 210.3 14.1 140 2-142 206-350 (360)
4 3nf2_A Putative polyprenyl syn 100.0 5.4E-30 1.9E-34 206.3 16.2 140 2-142 190-342 (352)
5 3rmg_A Octaprenyl-diphosphate 100.0 9.1E-30 3.1E-34 203.8 15.9 139 2-142 180-324 (334)
6 3oyr_A Trans-isoprenyl diphosp 100.0 1.3E-30 4.4E-35 209.4 10.6 140 2-142 198-343 (345)
7 3tc1_A Octaprenyl pyrophosphat 100.0 6.4E-30 2.2E-34 203.2 14.0 134 2-138 169-305 (315)
8 4dhd_A Polyprenyl synthetase; 100.0 1.3E-29 4.4E-34 204.5 15.0 137 2-142 191-334 (358)
9 3pko_A Geranylgeranyl pyrophos 100.0 2.2E-29 7.6E-34 201.5 15.1 138 2-142 190-332 (334)
10 3lk5_A Geranylgeranyl pyrophos 100.0 6.6E-29 2.3E-33 201.7 13.8 138 3-142 224-371 (380)
11 1wmw_A Geranylgeranyl diphosph 100.0 4.3E-29 1.5E-33 199.6 12.4 139 2-142 180-328 (330)
12 1wy0_A Geranylgeranyl pyrophos 100.0 5.3E-29 1.8E-33 199.8 12.8 140 2-142 184-340 (342)
13 2e8v_A Geranylgeranyl pyrophos 100.0 2.5E-29 8.7E-34 201.6 9.8 138 2-140 181-338 (340)
14 3apz_A Geranyl diphosphate syn 100.0 2.7E-28 9.4E-33 196.1 15.2 136 3-142 201-346 (348)
15 3aqb_B Component B of hexapren 100.0 4.1E-28 1.4E-32 193.5 13.5 138 2-142 177-323 (325)
16 1yhl_A Farnesyl pyrophosphate 100.0 1.7E-27 6E-32 192.3 14.6 136 3-142 216-360 (362)
17 2ihi_A Pyrophosphate synthase; 99.9 1.1E-27 3.8E-32 195.3 11.6 135 3-140 251-393 (395)
18 3dyh_A Farnesyl pyrophosphate 99.9 1.1E-27 3.8E-32 195.1 10.7 136 3-142 244-388 (390)
19 2qis_A Farnesyl pyrophosphate 99.9 1.1E-26 3.8E-31 188.3 13.4 137 2-142 229-372 (374)
20 1v4e_A Octoprenyl-diphosphate 99.9 5.8E-27 2E-31 185.0 10.1 118 2-128 173-291 (299)
21 1uby_A FPS, farnesyl diphospha 99.9 9.3E-27 3.2E-31 188.4 11.5 136 3-142 223-365 (367)
22 3mav_A Farnesyl pyrophosphate 99.9 4.3E-26 1.5E-30 186.0 13.8 121 14-138 268-390 (395)
23 2her_A Fragment, farnesyl pyro 99.9 1.7E-25 5.7E-30 180.9 8.9 126 3-139 219-352 (368)
24 3p8r_A Geranyltranstransferase 99.9 7.5E-23 2.6E-27 161.7 8.7 102 2-142 194-300 (302)
25 4f62_A Geranyltranstransferase 99.9 1.4E-22 4.7E-27 161.0 9.1 102 2-142 187-293 (317)
26 3ts7_A Geranyltranstransferase 99.9 1.4E-22 4.6E-27 161.5 7.8 102 2-142 194-300 (324)
27 1rtr_A Geranyltranstransferase 99.9 1.5E-22 5.2E-27 159.9 7.6 103 3-142 185-291 (301)
28 3lsn_A Geranyltranstransferase 99.9 1.5E-22 5E-27 160.1 7.4 102 2-142 188-294 (304)
29 3m0g_A Farnesyl diphosphate sy 99.9 1.3E-22 4.4E-27 160.0 6.3 103 2-143 185-288 (297)
30 3uca_A Geranyltranstransferase 99.9 3.6E-22 1.2E-26 159.0 8.9 102 2-142 217-322 (324)
31 3p8l_A Geranyltranstransferase 99.9 3.7E-22 1.3E-26 157.7 8.4 104 2-142 192-302 (302)
32 1rqj_A Geranyltranstransferase 99.9 1.2E-22 4E-27 160.4 5.5 104 2-142 188-297 (299)
33 3lom_A Geranyltranstransferase 99.9 2.9E-22 1E-26 158.9 5.6 101 2-142 195-301 (313)
34 2h8o_A Geranyltranstransferase 99.9 5.9E-22 2E-26 158.5 7.3 101 3-142 229-333 (335)
35 2q58_A Fragment, farnesyl pyro 99.8 4.7E-21 1.6E-25 155.0 10.3 117 14-141 236-357 (368)
36 2ftz_A Geranyltranstransferase 99.8 4.6E-21 1.6E-25 150.3 7.3 102 2-142 182-284 (284)
37 3pde_A Farnesyl-diphosphate sy 99.8 1.6E-20 5.3E-25 148.7 10.3 105 2-143 191-299 (309)
38 3ipi_A Geranyltranstransferase 99.8 3.7E-20 1.3E-24 145.8 7.8 106 2-142 173-282 (295)
39 3llw_A Geranyltranstransferase 99.8 2E-18 6.8E-23 136.8 9.3 102 3-142 196-303 (311)
40 3npk_A Geranyltranstransferase 99.7 1.6E-17 5.5E-22 130.5 9.5 64 3-68 182-249 (291)
41 2azj_A Geranylgeranyl pyrophos 99.6 3.7E-16 1.2E-20 122.7 6.2 98 4-141 177-278 (289)
42 2j1p_A Geranylgeranyl pyrophos 99.6 2.3E-15 7.8E-20 118.4 8.9 89 2-142 199-291 (293)
43 4fp4_A Polyprenyl synthetase; 99.1 3E-12 1E-16 100.2 -0.7 53 2-55 171-226 (285)
44 3kra_B Geranyl diphosphate syn 98.2 1.3E-06 4.3E-11 67.9 5.7 33 2-34 185-221 (274)
45 3qkc_B Geranyl diphosphate syn 97.9 4.6E-06 1.6E-10 64.6 3.4 34 2-35 186-223 (273)
46 3acx_A Dehydrosqualene synthas 95.0 0.32 1.1E-05 37.3 10.8 86 15-125 157-242 (293)
47 4hd1_A Squalene synthase HPNC; 94.4 0.26 8.9E-06 38.0 9.0 89 12-125 149-237 (294)
48 3vj8_A Squalene synthase; farn 92.1 0.26 8.9E-06 39.0 5.6 85 16-125 172-256 (343)
49 3rmg_A Octaprenyl-diphosphate 47.0 17 0.00058 28.3 3.6 36 17-64 72-107 (334)
50 3mzv_A Decaprenyl diphosphate 46.5 15 0.00053 28.7 3.3 21 16-36 77-97 (341)
51 4dhd_A Polyprenyl synthetase; 44.7 23 0.00077 27.9 4.0 21 16-36 69-89 (358)
52 4fp4_A Polyprenyl synthetase; 42.6 22 0.00074 27.2 3.5 20 17-36 73-92 (285)
53 3ipi_A Geranyltranstransferase 41.7 24 0.00081 27.1 3.6 21 16-36 66-86 (295)
54 3oyr_A Trans-isoprenyl diphosp 36.3 28 0.00095 27.3 3.3 22 15-36 88-109 (345)
55 3nf2_A Putative polyprenyl syn 33.7 28 0.00096 27.3 3.0 21 16-36 78-98 (352)
56 1wy0_A Geranylgeranyl pyrophos 32.8 31 0.0011 26.8 3.0 21 16-36 70-90 (342)
57 3tc1_A Octaprenyl pyrophosphat 30.6 32 0.0011 26.5 2.8 21 16-36 61-81 (315)
58 2e5n_A RNA polymerase II elong 29.9 1.1E+02 0.0036 19.8 4.7 39 60-98 17-56 (100)
59 1s2x_A CAG-Z; CAG pathogenicit 29.3 25 0.00085 24.3 1.7 11 21-31 149-159 (206)
60 2doa_A RNA polymerase II elong 29.3 95 0.0033 20.1 4.5 39 61-99 17-56 (104)
61 3p8l_A Geranyltranstransferase 27.0 49 0.0017 25.4 3.2 20 17-36 76-97 (302)
62 3uca_A Geranyltranstransferase 25.8 47 0.0016 25.8 3.0 36 16-63 98-135 (324)
63 3f2e_A SIRV coat protein; four 23.8 1.4E+02 0.0046 18.5 4.2 41 93-133 17-57 (100)
64 3pde_A Farnesyl-diphosphate sy 23.7 61 0.0021 25.0 3.2 35 17-63 75-111 (309)
65 1yx3_A Hypothetical protein DS 23.6 1.7E+02 0.0058 19.7 5.0 53 87-141 69-128 (132)
66 3ts7_A Geranyltranstransferase 23.2 56 0.0019 25.3 2.9 35 16-62 74-110 (324)
67 2lnh_A N-WAsp, neural wiskott- 22.8 1.2E+02 0.0042 17.7 3.9 20 86-105 45-64 (65)
68 4f62_A Geranyltranstransferase 21.9 60 0.0021 25.1 2.9 18 19-36 72-91 (317)
No 1
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.97 E-value=2.2e-31 Score=210.52 Aligned_cols=142 Identities=58% Similarity=0.921 Sum_probs=119.4
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHhc
Q psy3877 2 MAIRLMQLFSDTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQR 81 (145)
Q Consensus 2 ~~~rl~~~~~~~~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~~ 81 (145)
++++++...++..+.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..++.+.+..++.++
T Consensus 159 ~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~ 238 (301)
T 2q80_A 159 LAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQR 238 (301)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcC
Confidence 46788888888777899999999999999999999999999999999999999999999999999865544677888776
Q ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCCC
Q psy3877 82 TRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPDS 143 (145)
Q Consensus 82 ~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~~ 143 (145)
..+.+...+++++++++|++++|+..+++|.++|++.|+.+|.++....+++.+.++++.++
T Consensus 239 ~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~L~~l~~~l~~~~~~~~ 300 (301)
T 2q80_A 239 TENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEEN 300 (301)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC---
T ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcccC
Confidence 65555556699999999999999999999999999999999999999999999999988774
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=99.97 E-value=8.5e-31 Score=210.22 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=113.9
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCch-H-HHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDD-R-QVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~-~-~l~ 75 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|||++++++..++. + .|.
T Consensus 186 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~ 265 (341)
T 3mzv_A 186 AATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWK 265 (341)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHH
Confidence 4567777777653 479999999999999999999999999999999999999999999999999987542 3 577
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++.++..+++++++++++++++|++++|+..+++|.++|++.|+.||+++.++.| ..+++++++|
T Consensus 266 ~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L-~~la~~~~~r 331 (341)
T 3mzv_A 266 RVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQML-DDLADYVVER 331 (341)
T ss_dssp HHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH-HHHHHHHTGG
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHhc
Confidence 88877666677889999999999999999999999999999999999999999886 5777777765
No 3
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=99.97 E-value=1.3e-30 Score=210.34 Aligned_cols=140 Identities=22% Similarity=0.315 Sum_probs=116.7
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~~l~~ 76 (145)
++++++...++.+ +.++.||.++|+||||+||++|++++++.+||++|+||++||+|||++++++..+. .+.|.+
T Consensus 206 ~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~ 285 (360)
T 3lmd_A 206 SAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRD 285 (360)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHH
Confidence 3567777777653 57999999999999999999999999999999999999999999999999998543 347889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++.++..+++++++++++++++|++++|+..+++|.++|++.|+.||+++.++.| ..+++++++|
T Consensus 286 ~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L-~~La~~~~~R 350 (360)
T 3lmd_A 286 ILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEAL-RNLATFTVKR 350 (360)
T ss_dssp HCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHH-HHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHHh
Confidence 9988777889999999999999999999999999999999999999999998886 4677777655
No 4
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.97 E-value=5.4e-30 Score=206.28 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=120.3
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC-chHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP-DDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~-~~~~l~~ 76 (145)
++++++...++.+ +.++.||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+ +.++|..
T Consensus 190 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~ 269 (352)
T 3nf2_A 190 CASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGE 269 (352)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHH
Confidence 3566777777653 5799999999999999999999999999999999999999999999999999864 3447888
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQR-------TRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGG-NPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~-------~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~-~~~~~~ll~~l~~~~~~~ 142 (145)
++.++ ..+++++.+++++++++|++++|+..+++|.++|++.|+.+|. ++.++.| ..+++++++|
T Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~L-~~la~~~~~R 342 (352)
T 3nf2_A 270 ILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRF-TALADFVVVR 342 (352)
T ss_dssp HHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH-HHHHHHHCC-
T ss_pred HHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHhc
Confidence 88764 3467889999999999999999999999999999999999997 5667665 5677777765
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=9.1e-30 Score=203.76 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=116.7
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-h-HHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-D-RQVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~-~~l~ 75 (145)
++++++...++.+ +.+..||.++|+||||+||++|++ +++.+|||+|+||++||+|||++++++..+. + ..|.
T Consensus 180 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~ 258 (334)
T 3rmg_A 180 ACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIA 258 (334)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHH
Confidence 3567777777653 479999999999999999999999 5778999999999999999999999998643 3 3788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++.++..+.+++.+++++++++|++++|+..+++|.++|++.|+.+|+++.++.|. .++++++.|
T Consensus 259 ~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~-~l~~~~~~R 324 (334)
T 3rmg_A 259 FKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALR-TYLDYVVAR 324 (334)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH-HHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHHhc
Confidence 899888788899999999999999999999999999999999999999999988864 677776655
No 6
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=99.97 E-value=1.3e-30 Score=209.41 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=100.5
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l~ 75 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|+|++++..+. .+ .|.
T Consensus 198 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~ 277 (345)
T 3oyr_A 198 AASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWE 277 (345)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHH
Confidence 3567777777653 57999999999999999999999999999999999999999999999999998643 33 577
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++.++..+.+++.+++++++++|++++|+..+++|.++|++.|+.||+++.++.|. .++++++.|
T Consensus 278 ~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~-~la~~~~~R 343 (345)
T 3oyr_A 278 RAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALE-ELADFAVSR 343 (345)
T ss_dssp HHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHH-HHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHHhc
Confidence 788776656678899999999999999999999999999999999999999998864 677776655
No 7
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.97 E-value=6.4e-30 Score=203.20 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=118.0
Q ss_pred hHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC-chH-HHHHHH
Q psy3877 2 MAIRLMQLFSDT-KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP-DDR-QVIQIL 78 (145)
Q Consensus 2 ~~~rl~~~~~~~-~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~-~~~-~l~~~l 78 (145)
++++++...++. .+.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+ +.+ .|.+++
T Consensus 169 ~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l 248 (315)
T 3tc1_A 169 ASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYF 248 (315)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHH
Confidence 356777777654 67899999999999999999999999999999999999999999999999999864 333 677777
Q ss_pred HhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy3877 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTW 138 (145)
Q Consensus 79 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~ 138 (145)
.++ +++++.+++++++++|++++|+..+++|.++|++.|+.+|+++.++.|. .++++
T Consensus 249 ~~~--~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~-~l~~~ 305 (315)
T 3tc1_A 249 KQD--SHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQ-DVISR 305 (315)
T ss_dssp TCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH-HHHCC
T ss_pred cCC--CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHH
Confidence 766 7889999999999999999999999999999999999999999998865 44444
No 8
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.96 E-value=1.3e-29 Score=204.49 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=114.0
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcc-hHHHHHHHhcCCc-h-HHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKF-SFPIIHAIQSRPD-D-RQV 74 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~-TlPli~al~~~~~-~-~~l 74 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+ |+|++++++..+. . +.|
T Consensus 191 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L 270 (358)
T 4dhd_A 191 AAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRL 270 (358)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHH
Confidence 3566777776653 5799999999999999999999999999999999999999999 9999999998643 3 378
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 75 IQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 75 ~~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
.+++.++..+.+++++++++++++|++++|+..+++|.++|++.|+.+|+++ . +..++++++.|
T Consensus 271 ~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~---~-L~~la~~~~~R 334 (358)
T 4dhd_A 271 LEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG---T-LKELLDFIVAR 334 (358)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH---H-HHHHHHHHTTT
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---H-HHHHHHHHHhc
Confidence 8999888778899999999999999999999999999999999999999887 3 45677777765
No 9
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.96 E-value=2.2e-29 Score=201.52 Aligned_cols=138 Identities=15% Similarity=0.247 Sum_probs=120.5
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+ .++.++
T Consensus 190 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~--~~l~~~ 267 (334)
T 3pko_A 190 LSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAP--RDFHKL 267 (334)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSH--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCc--HHHHHH
Confidence 3567777777653 5799999999999999999999999999999999999999999999999999865 456777
Q ss_pred HH-hcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 78 LR-QRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~-~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+. ++..+++++.+++++++++|++++|+..++++.++|++.|+.+|.++.++.|. .++++++.|
T Consensus 268 l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~-~l~~~~~~R 332 (334)
T 3pko_A 268 LKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLE-QLTRLLLRR 332 (334)
T ss_dssp HTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHH-HHHHHHTTC
T ss_pred HhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHHhc
Confidence 74 34457889999999999999999999999999999999999999999888865 666666655
No 10
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.96 E-value=6.6e-29 Score=201.67 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=115.6
Q ss_pred HHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC----ch-HH
Q psy3877 3 AIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP----DD-RQ 73 (145)
Q Consensus 3 ~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~----~~-~~ 73 (145)
.+++....++. .+.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+ +. +.
T Consensus 224 ~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~ 303 (380)
T 3lk5_A 224 PLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATA 303 (380)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHH
Confidence 45666666665 35799999999999999999999999999999999999999999999999999752 22 35
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHhhhcCCC
Q psy3877 74 VIQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGN-PLLEAILDELLTWDTPD 142 (145)
Q Consensus 74 l~~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~-~~~~~ll~~l~~~~~~~ 142 (145)
|.+++++ ..+++++.+++++++++|++++|+..+++|.++|++.|+.+|.+ +.++.|. .+++..+.+
T Consensus 304 L~~~l~~-~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~-~La~~~~~~ 371 (380)
T 3lk5_A 304 IRAGVGK-VTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLR-ALAIRSTER 371 (380)
T ss_dssp HHHHTTT-CCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH-HHHHHHHC-
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHHHHHh
Confidence 7777753 35778899999999999999999999999999999999999965 5676654 566555543
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.96 E-value=4.3e-29 Score=199.56 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=116.9
Q ss_pred hHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-h-HHHHHH
Q psy3877 2 MAIRLMQLFSDTK--SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-D-RQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~~--~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~-~~l~~~ 77 (145)
++++++...++.+ ..+..||.++|+||||+||++|++++++ +|||+|+||++||+|+|++++++..+. . +.+..+
T Consensus 180 ~~~~~ga~lag~~~~~~l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~ 258 (330)
T 1wmw_A 180 APLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERARALAL 258 (330)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHH
Confidence 3566777776542 2299999999999999999999999999 999999999999999999999998753 3 357777
Q ss_pred HHhcCCC--HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh----ccCCCHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRD--VEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVA----RLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~--~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~----~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+.++..+ .+++.+++++++++|++++|+..+++|.++|.+.|+ .+|.++.++.|. .+.++++.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~-~l~~~~~~R 328 (330)
T 1wmw_A 259 LALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLR-GLLAALVER 328 (330)
T ss_dssp HTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHH-HHHHHHHHC
T ss_pred HcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH-HHHHHHHhc
Confidence 7654433 678999999999999999999999999999999999 999888887764 566555544
No 12
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=5.3e-29 Score=199.84 Aligned_cols=140 Identities=17% Similarity=0.270 Sum_probs=118.2
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-h-HHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-D-RQVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~-~~l~ 75 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+. . ..|.
T Consensus 184 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~ 263 (342)
T 1wy0_A 184 ASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFL 263 (342)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHH
Confidence 3566666666643 57999999999999999999999999999999999999999999999999998753 2 2566
Q ss_pred HHHHhcC-----------CCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRT-----------RDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~-----------~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++.++. .+.+++.+++++++++|++++++..++++.++|++.|+.+|+++.++.| ..+.++++.|
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L-~~l~~~~~~R 340 (342)
T 1wy0_A 264 KIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDL-ELLAKFIVER 340 (342)
T ss_dssp HTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHH-HHHHHHTTTC
T ss_pred HHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHhc
Confidence 6766543 2367889999999999999999999999999999999999998888775 5667776665
No 13
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.96 E-value=2.5e-29 Score=201.60 Aligned_cols=138 Identities=30% Similarity=0.555 Sum_probs=96.3
Q ss_pred hHHHHHhhcCCCh---HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc------hH
Q psy3877 2 MAIRLMQLFSDTK---SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD------DR 72 (145)
Q Consensus 2 ~~~rl~~~~~~~~---~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~------~~ 72 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+. .+
T Consensus 181 ~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~ 260 (340)
T 2e8v_A 181 LTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHN 260 (340)
T ss_dssp HHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHH
Confidence 4577787777654 68999999999999999999999999999999999999999999999999998643 33
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHH-----HhccCCCH-----HHHHHHHHHhhhcC
Q psy3877 73 QVIQILRQRTRDVEVKKYCISLLD-RFGSFEHTREVLKELDVSARTE-----VARLGGNP-----LLEAILDELLTWDT 140 (145)
Q Consensus 73 ~l~~~l~~~~~~~~~~~~i~~~l~-~~g~~~~~~~~~~~~~~~A~~~-----L~~lp~~~-----~~~~ll~~l~~~~~ 140 (145)
.+..++.++..+.+...+++++|+ ++|++++|+..+++|.++|++. |+.+|+++ .++.|. .+.+++.
T Consensus 261 ~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~~~~~~L~-~l~~~l~ 338 (340)
T 2e8v_A 261 EILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELL-YIIDHLS 338 (340)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccHHHHHHHH-HHHHHHH
Confidence 688888776655555568999999 9999999999999999999999 99999998 777654 5555543
No 14
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.96 E-value=2.7e-28 Score=196.09 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=115.6
Q ss_pred HHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHH
Q psy3877 3 AIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQIL 78 (145)
Q Consensus 3 ~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l 78 (145)
+++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..++ +..++
T Consensus 201 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~---~~~~l 277 (348)
T 3apz_A 201 SCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQ---LREVV 277 (348)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTT---HHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCHH---HHHHH
Confidence 466677777653 46899999999999999999999999999999999999999999999999998653 55666
Q ss_pred HhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCH------HHHHHHHHHhhhcCCC
Q psy3877 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP------LLEAILDELLTWDTPD 142 (145)
Q Consensus 79 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~ll~~l~~~~~~~ 142 (145)
.+...+.+++.+++++++++|++++|+..+++|.++|++.|+.+|.++ .++.| ..+.++++.|
T Consensus 278 ~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L-~~l~~~~~~R 346 (348)
T 3apz_A 278 DQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRAL-IDLTHRVITR 346 (348)
T ss_dssp HTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHH-HHHHHHHHHC
T ss_pred HhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHH-HHHHHHHHhC
Confidence 655545678899999999999999999999999999999999999875 66665 5666666554
No 15
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.95 E-value=4.1e-28 Score=193.50 Aligned_cols=138 Identities=18% Similarity=0.308 Sum_probs=117.5
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-h-HHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-D-RQVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~-~~l~ 75 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+||++||+|+|++++++..+. . +.+.
T Consensus 177 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~ 256 (325)
T 3aqb_B 177 ASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLE 256 (325)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHH
Confidence 4567777777653 47999999999999999999999999999999999999999999999999997632 2 2566
Q ss_pred ---HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 ---QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ---~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++.++.. ++++.+++++++++ ++++|+..++++.++|++.|+.+|.++.++.| ..+.++++.|
T Consensus 257 ~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L-~~l~~~~~~R 323 (325)
T 3aqb_B 257 AVVKHLTSTSD-DEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYL-EEIHEKMLKR 323 (325)
T ss_dssp HHHHTCCTTCC-HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH-HHHHHHHTTT
T ss_pred HHHHHHcCCCC-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHhC
Confidence 66655443 68889999999999 99999999999999999999999999988775 4666666655
No 16
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.95 E-value=1.7e-27 Score=192.28 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=115.2
Q ss_pred HHHHHhhcCC-C----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HHH
Q psy3877 3 AIRLMQLFSD-T----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QVI 75 (145)
Q Consensus 3 ~~rl~~~~~~-~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l~ 75 (145)
+++++...++ . .+.+..||.++|+||||+||++|++++++.+|| +|+||++||+|+|++++++..+. .+ .|.
T Consensus 216 ~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~ 294 (362)
T 1yhl_A 216 PLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFK 294 (362)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHH
Confidence 4566666665 3 468999999999999999999999999999999 99999999999999999998753 33 466
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHH--HHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLL--EAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~--~~ll~~l~~~~~~~ 142 (145)
+++.++ +++++.+++++++++|++++++..++++.++|++.|+.+|.++.+ +.|. .+.+++..|
T Consensus 295 ~~~~~~--~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~-~l~~~i~~R 360 (362)
T 1yhl_A 295 ANYGDK--DPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVA-VVWEKTHKR 360 (362)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHTC
T ss_pred HHHcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHHHHhc
Confidence 676554 467889999999999999999999999999999999999999888 7665 555555444
No 17
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.95 E-value=1.1e-27 Score=195.26 Aligned_cols=135 Identities=17% Similarity=0.270 Sum_probs=100.3
Q ss_pred HHHHHhhcCC----C--hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC-chH-HH
Q psy3877 3 AIRLMQLFSD----T--KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP-DDR-QV 74 (145)
Q Consensus 3 ~~rl~~~~~~----~--~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~-~~~-~l 74 (145)
+++++...++ . .+.+..||.++|+||||+||++|++++++.+|| +|+||++||+|||++++++..+ +.+ .|
T Consensus 251 ~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L 329 (395)
T 2ihi_A 251 PIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKI 329 (395)
T ss_dssp HHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHH
Confidence 4556555554 2 568999999999999999999999999999999 9999999999999999999864 333 56
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcC
Q psy3877 75 IQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDT 140 (145)
Q Consensus 75 ~~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~ 140 (145)
.+++.++ +.+++.+++++++++|++++++..++++.++|++.|+.+|+++.++.|...+..+++
T Consensus 330 ~~~~~~~--~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~ 393 (395)
T 2ihi_A 330 VKNYGKN--NLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFT 393 (395)
T ss_dssp HHHCC-C--CHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC---
T ss_pred HHHhCCC--CHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777654 567889999999999999999999999999999999999999988887654444433
No 18
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.95 E-value=1.1e-27 Score=195.06 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=115.3
Q ss_pred HHHHHhhcCCC-----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC-chH-HHH
Q psy3877 3 AIRLMQLFSDT-----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP-DDR-QVI 75 (145)
Q Consensus 3 ~~rl~~~~~~~-----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~-~~~-~l~ 75 (145)
+++++...++. .+.+..||.++|+||||+||++|++++++.+|| +|+||++||+|||++++++..+ +++ .|.
T Consensus 244 ~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~ 322 (390)
T 3dyh_A 244 PLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFK 322 (390)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHH
Confidence 56677776653 357999999999999999999999999999999 9999999999999999999864 333 566
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHH--HHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPL--LEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~--~~~ll~~l~~~~~~~ 142 (145)
+++.+ .+++++.+++++++++|++++++..++++.++|++.|+.+|.++. ++.|. .|.+.+..|
T Consensus 323 ~~~~~--~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~-~l~~~i~~R 388 (390)
T 3dyh_A 323 ANYGS--GDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVE-TLWGKTYKR 388 (390)
T ss_dssp TTTTC--CCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHTTTTC
T ss_pred HHhCC--CCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHHHHcC
Confidence 77764 367889999999999999999999999999999999999998774 66654 555555554
No 19
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.94 E-value=1.1e-26 Score=188.34 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=114.4
Q ss_pred hHHHHHhhcCC-Ch----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HH
Q psy3877 2 MAIRLMQLFSD-TK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QV 74 (145)
Q Consensus 2 ~~~rl~~~~~~-~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l 74 (145)
++++++...++ .+ +.+..||.++|+||||+||++|++++++.+|| +|+||++||+|||++++++..++ .+ .|
T Consensus 229 ~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l 307 (374)
T 2qis_A 229 LPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQIL 307 (374)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHH
Confidence 35667777776 43 47999999999999999999999999999999 99999999999999999998753 33 46
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 75 IQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 75 ~~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
...+.++ +++++.+++++++++|+.++++..++++.++|++.|+.+|.++.++.|. .+.+++..|
T Consensus 308 ~~~~~~~--~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~-~l~~~i~~R 372 (374)
T 2qis_A 308 KENYGQK--EAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFL-GLARKIYKR 372 (374)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH-HHHHHHC--
T ss_pred HHHhcCC--CHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH-HHHHHHHcC
Confidence 6666544 3678899999999999999999999999999999999999998887765 455555444
No 20
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.94 E-value=5.8e-27 Score=185.02 Aligned_cols=118 Identities=23% Similarity=0.258 Sum_probs=101.8
Q ss_pred hHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHh
Q psy3877 2 MAIRLMQLFSDTK-SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQ 80 (145)
Q Consensus 2 ~~~rl~~~~~~~~-~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~ 80 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++ +.+|||+|+||++||+|+|++++++..++ +.+++.+
T Consensus 173 ~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~---l~~~l~~ 248 (299)
T 1v4e_A 173 LALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPE---ARQMFEN 248 (299)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHH---HHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChH---HHHHHhH
Confidence 3566666666544 89999999999999999999999999 99999999999999999999999998643 6666654
Q ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHH
Q psy3877 81 RTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLL 128 (145)
Q Consensus 81 ~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~ 128 (145)
+++.+++++++++|++++|+..++.|.++|.+.|+.+|+...+
T Consensus 249 -----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~k 291 (299)
T 1v4e_A 249 -----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVDG 291 (299)
T ss_dssp -----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC---
T ss_pred -----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3567899999999999999999999999999999999987543
No 21
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.94 E-value=9.3e-27 Score=188.38 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=114.5
Q ss_pred HHHHHhhcCC-C----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HHH
Q psy3877 3 AIRLMQLFSD-T----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QVI 75 (145)
Q Consensus 3 ~~rl~~~~~~-~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l~ 75 (145)
+++++...++ . .+.+..||.++|+||||+||++|++++++.+|| +|+||++||+|||++++++..+. .+ .|.
T Consensus 223 ~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~ 301 (367)
T 1uby_A 223 PVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLE 301 (367)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHH
Confidence 4566666666 3 347999999999999999999999999999999 99999999999999999998643 33 466
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+.+.++ +++++.+++++++++|+.++++..++++.++|++.|+.+|+++.++.|. .+.+++..|
T Consensus 302 ~~~~~~--~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~-~l~~~i~~R 365 (367)
T 1uby_A 302 DNYGRK--EPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFL-GLAQKIYKR 365 (367)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHH-HHHHHHCCC
T ss_pred HHhcCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHHhC
Confidence 666554 3678899999999999999999999999999999999999888887765 555555554
No 22
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.94 E-value=4.3e-26 Score=186.05 Aligned_cols=121 Identities=18% Similarity=0.348 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HHHHHHHhcCCCHHHHHHH
Q psy3877 14 KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QVIQILRQRTRDVEVKKYC 91 (145)
Q Consensus 14 ~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l~~~l~~~~~~~~~~~~i 91 (145)
.+.+..||.++|+||||+||+||++++++.+|| +|+||++||+|||+|+|++..++ ++ .|.+.+.++ +.+.++++
T Consensus 268 ~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~--d~~~~~~v 344 (395)
T 3mav_A 268 YKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN--NLACVKVI 344 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCC--CHHHHHHH
Confidence 368999999999999999999999999999999 69999999999999999998743 33 577777654 56778889
Q ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhh
Q psy3877 92 ISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTW 138 (145)
Q Consensus 92 ~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~ 138 (145)
.++++++|+.++++..++++.++|.+.|+.+|.++.+. ++..+.+.
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~l~~-ll~~lle~ 390 (395)
T 3mav_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEY-VLKYLLEI 390 (395)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999766554 45555443
No 23
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.92 E-value=1.7e-25 Score=180.87 Aligned_cols=126 Identities=11% Similarity=0.141 Sum_probs=104.7
Q ss_pred HHHHHhhcCC----C--hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCC-chH-HH
Q psy3877 3 AIRLMQLFSD----T--KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRP-DDR-QV 74 (145)
Q Consensus 3 ~~rl~~~~~~----~--~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~-~~~-~l 74 (145)
.+++....++ . .+.++.||.++|+||||+||++|++ .+|| +|+||++||+|||++++++..+ +.+ .|
T Consensus 219 ~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L 293 (368)
T 2her_A 219 PVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKI 293 (368)
T ss_dssp HHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHH
Confidence 4555555553 2 4679999999999999999999999 6899 9999999999999999999864 333 56
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhc
Q psy3877 75 IQILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWD 139 (145)
Q Consensus 75 ~~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~ 139 (145)
...+.++ + .+++++++++|++++++..++++.++|++.|+.+|.++.++.|...+..++
T Consensus 294 ~~~~~~~---~---~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~ 352 (368)
T 2her_A 294 SENYGKN---S---SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQIS 352 (368)
T ss_dssp HHHTTTC---H---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCc---H---HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6666543 1 789999999999999999999999999999999999988887765554443
No 24
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.88 E-value=7.5e-23 Score=161.68 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=73.3
Q ss_pred hHHHHHhhcCC-C----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHH
Q psy3877 2 MAIRLMQLFSD-T----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~-~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~ 76 (145)
++++++...++ . .+.+..||.++|+||||+||++|++++++.+||++|+|+++||+|||++++
T Consensus 194 ~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~------------ 261 (302)
T 3p8r_A 194 CAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLG------------ 261 (302)
T ss_dssp HHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHH------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHH------------
Confidence 35677777766 3 358999999999999999999999999999999999999999999999983
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++++..++++.++|.+.|+.||.+ ++. +..+++++..|
T Consensus 262 ------------------------l~~a~~~a~~~~~~A~~~L~~l~~~--~~~-L~~l~~~~~~R 300 (302)
T 3p8r_A 262 ------------------------LEGAQQKAHTLLQEALLALEAIPYN--TEH-LEEFARYVVER 300 (302)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHTTCSSC--THH-HHHHHHHHHHC
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHhCCcc--HHH-HHHHHHHHHhc
Confidence 6788999999999999999999987 344 56777777655
No 25
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.87 E-value=1.4e-22 Score=161.02 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=72.1
Q ss_pred hHHHHHhhcCC-Ch----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHH
Q psy3877 2 MAIRLMQLFSD-TK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~-~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~ 76 (145)
++++++...++ .+ +.+..||.++|+||||+||++|++++++.+||++|+|+++||.|+|+++
T Consensus 187 ~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------------- 253 (317)
T 4f62_A 187 ASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLL------------- 253 (317)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHH-------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHH-------------
Confidence 35677777777 43 5799999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++++|+..++++.++|++.|+.||.+ ++. +..++++++.|
T Consensus 254 -----------------------gle~a~~~a~~~~~~A~~~L~~l~~~--~~~-L~~l~~~~~~R 293 (317)
T 4f62_A 254 -----------------------GLDGAKALVVRLHEQAIAQISEFGDK--SQP-LTDLANYIIDR 293 (317)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHGGGGGG--GHH-HHHHHHHHHC-
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCchh--HHH-HHHHHHHHHHh
Confidence 47889999999999999999999863 444 56777777765
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.87 E-value=1.4e-22 Score=161.47 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=74.0
Q ss_pred hHHHHHhhcCC-Ch----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHH
Q psy3877 2 MAIRLMQLFSD-TK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~-~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~ 76 (145)
++++++...++ .+ +.+..||.++|+||||+||++|++++++.+||++|+|+++||.|||+|+
T Consensus 194 ~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~------------- 260 (324)
T 3ts7_A 194 ASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL------------- 260 (324)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHH-------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH-------------
Confidence 45677777777 43 4799999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++++|+..++++.++|.+.|+.||.+ ++. +..++++++.|
T Consensus 261 -----------------------gle~a~~~a~~~~~~A~~~L~~l~~~--~~~-L~~la~~~~~R 300 (324)
T 3ts7_A 261 -----------------------GLSGAKEKAEEMHEAALESLAGFGPE--ADL-LRELARFIIQR 300 (324)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTTTCCGG--GHH-HHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HHH-HHHHHHHHHhc
Confidence 37899999999999999999999976 344 56777777665
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.87 E-value=1.5e-22 Score=159.89 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHH
Q psy3877 3 AIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQIL 78 (145)
Q Consensus 3 ~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l 78 (145)
+++++...++. .+.+..||.++|+||||+||++|++++++.+||++|+|+++||+|+|+++++
T Consensus 185 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al------------- 251 (301)
T 1rtr_A 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGK------------- 251 (301)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHH-------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHH-------------
Confidence 45666666654 3579999999999999999999999999999999999999999999999973
Q ss_pred HhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 79 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++++.++++.++|++.|+.||+++.++.| ..+.++++.|
T Consensus 252 -----------------------~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L-~~l~~~i~~R 291 (301)
T 1rtr_A 252 -----------------------DGAEDKLTYHRDAAVDELTQIDEQFNTKHL-LEIVDLFYSR 291 (301)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHTSCTTSCCHHH-HHHHHHHHCC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHHHh
Confidence 467889999999999999999977766665 5666666655
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.87 E-value=1.5e-22 Score=160.12 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=76.0
Q ss_pred hHHHHHhhcCCC-h----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHH
Q psy3877 2 MAIRLMQLFSDT-K----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~~~~-~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~ 76 (145)
++++++...++. + +.+..||.++|+||||+||++|++++++.+||++|+|+++||+|||+|+
T Consensus 188 ~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------------- 254 (304)
T 3lsn_A 188 ASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL------------- 254 (304)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHH-------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHH-------------
Confidence 356777777765 3 4799999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++++++..++++.++|.+.|+.||.+ ++. +..++++++.|
T Consensus 255 -----------------------~l~~a~~~a~~~~~~A~~~L~~l~~~--~~~-L~~l~~~~~~R 294 (304)
T 3lsn_A 255 -----------------------GLAAAKEYALELRDQALHALRPFDAA--AEP-LRELARYIVER 294 (304)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTTTSCGG--GHH-HHHHHHHHHC-
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCchh--HHH-HHHHHHHHHHh
Confidence 47888999999999999999999863 444 56788887766
No 29
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.86 E-value=1.3e-22 Score=159.98 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=66.5
Q ss_pred hHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHh
Q psy3877 2 MAIRLMQLFSDT-KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQ 80 (145)
Q Consensus 2 ~~~rl~~~~~~~-~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~ 80 (145)
++++++...++. .+.+..||.++|+||||+||++|++++++.+||++|+|+++||+|||++++
T Consensus 185 ~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------- 248 (297)
T 3m0g_A 185 FAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLG---------------- 248 (297)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHC----------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHH----------------
Confidence 356677776654 338999999999999999999999999999999999999999999999983
Q ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCCC
Q psy3877 81 RTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPDS 143 (145)
Q Consensus 81 ~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~~ 143 (145)
++++++.++++.++|.+.|+.||.++ ..+..+++|++.|.
T Consensus 249 --------------------l~~a~~~~~~~~~~A~~~L~~~~~~~---~~L~~l~~~~~~R~ 288 (297)
T 3m0g_A 249 --------------------LAGAKSRAADLVAEAEAALAPYGEAA---STLRACARYVIERD 288 (297)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHTGGGGGGG---HHHHHHHHHHTC--
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhc
Confidence 56778889999999999999999865 34568888888764
No 30
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.86 E-value=3.6e-22 Score=159.03 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=70.6
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++.+ +.++.||.++|+||||+||++|++++++.+|||+|+|+++||.|||++++
T Consensus 217 ~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a------------- 283 (324)
T 3uca_A 217 ASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG------------- 283 (324)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHC-------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH-------------
Confidence 3567777777643 57999999999999999999999999999999999999999999999984
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++++..++++.++|.+.|+.||.+. ..+..++++++.|
T Consensus 284 -----------------------l~~a~~~a~~~~~~A~~~L~~l~~~~---~~L~~la~~i~~R 322 (324)
T 3uca_A 284 -----------------------LEECKKKCVNITEECIEILSSIKGNT---EPLKVLTMKLLER 322 (324)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHHC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhc
Confidence 46788999999999999999999753 3356777777655
No 31
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.86 E-value=3.7e-22 Score=157.70 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=71.7
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++.+ +.+..||.++|+||||+||++|++++++.+|||+|+|+++||+|||+++
T Consensus 192 ~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~-------------- 257 (302)
T 3p8l_A 192 FALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALL-------------- 257 (302)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHH--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHH--------------
Confidence 3567777777643 5799999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCC---CHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGG---NPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~---~~~~~~ll~~l~~~~~~~ 142 (145)
+++.+++.++++.++|.+.|+.||+ ++.+.. +..+.+++..|
T Consensus 258 ----------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~-L~~l~~~~~~R 302 (302)
T 3p8l_A 258 ----------------------GIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEH-LANLLTQLQLR 302 (302)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHH-HHHHHHHTSCC
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHhcccccCChhHHH-HHHHHHHHhhC
Confidence 4677778899999999999999975 555555 56788887764
No 32
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.86 E-value=1.2e-22 Score=160.35 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=87.0
Q ss_pred hHHHHHhhc-CCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHH
Q psy3877 2 MAIRLMQLF-SDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQ 76 (145)
Q Consensus 2 ~~~rl~~~~-~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~ 76 (145)
++++++... ++. .+.+..||.++|+||||+||++|++++++.+|||+|+|+++||.|+|+++++
T Consensus 188 ~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l----------- 256 (299)
T 1rqj_A 188 AAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGL----------- 256 (299)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH-----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH-----------
Confidence 356677766 543 3579999999999999999999999999999999999999999999999975
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhhhcCCC
Q psy3877 77 ILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNP-LLEAILDELLTWDTPD 142 (145)
Q Consensus 77 ~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~-~~~~ll~~l~~~~~~~ 142 (145)
++++..++++.++|++.|+.+|.++ .++. +..+.++++.|
T Consensus 257 -------------------------~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~-L~~l~~~~~~R 297 (299)
T 1rqj_A 257 -------------------------EQARKKARDLIDDARQSLKQLAEQSLDTSA-LEALADYIIQR 297 (299)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHTTTCCCHH-HHHHHHHHHHC
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHHHHhc
Confidence 3567889999999999999998743 5555 45777776655
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.9e-22 Score=158.95 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=70.9
Q ss_pred hHHHHHhhcCC--Ch----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHH
Q psy3877 2 MAIRLMQLFSD--TK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVI 75 (145)
Q Consensus 2 ~~~rl~~~~~~--~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~ 75 (145)
+++++ ...++ .+ +.+..||.++|+||||+||++|++++++.+|||+|+|+++||.|||+++
T Consensus 195 ~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------------ 261 (313)
T 3lom_A 195 ACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF------------ 261 (313)
T ss_dssp HHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHS------------
T ss_pred HHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHH------------
Confidence 35666 66666 43 4799999999999999999999999999999999999999999999997
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 76 QILRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 76 ~~l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++++++..++++.++|.+.|+.||.+ +. .+..+++|++.|
T Consensus 262 ------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~--~~-~L~~la~~~~~R 301 (313)
T 3lom_A 262 ------------------------NKQQLEEEIAVHYQIAMDSLRLFGSK--AA-ALIELTKQLQNR 301 (313)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHTTTTTGGG--GH-HHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhCCcc--HH-HHHHHHHHHHhc
Confidence 37888999999999999999999875 33 456777776543
No 34
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.85 E-value=5.9e-22 Score=158.51 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=68.7
Q ss_pred HHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHH
Q psy3877 3 AIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQIL 78 (145)
Q Consensus 3 ~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l 78 (145)
+++++...++. .+.+..||.++|+||||+||++|++++++.+||++|+|+++||.|+|++++
T Consensus 229 a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~-------------- 294 (335)
T 2h8o_A 229 ACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRG-------------- 294 (335)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHC--------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH--------------
Confidence 45666666654 357999999999999999999999999999999999999999999999985
Q ss_pred HhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 79 RQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 79 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++++..+++|.++|++.|+.+|. .++. +..+.++++.|
T Consensus 295 ----------------------le~a~~~a~~~~~~A~~~L~~l~~--~~~~-L~~l~~~i~~R 333 (335)
T 2h8o_A 295 ----------------------EAWAREKLQEQVAEASELLAPYGE--KAAI-LIAAARFIAER 333 (335)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTGGGGG--GGHH-HHHHHHHHHC-
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHhCch--hHHH-HHHHHHHHHhc
Confidence 468899999999999999999985 3444 56777776655
No 35
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.84 E-value=4.7e-21 Score=155.02 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCc-hH-HHHHHHHhcCCCHHHHHHH
Q psy3877 14 KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPD-DR-QVIQILRQRTRDVEVKKYC 91 (145)
Q Consensus 14 ~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~-~~-~l~~~l~~~~~~~~~~~~i 91 (145)
.+.+..||.++|+||||+||++|+++ ||+.|+||++||+|||+++|++..++ .+ .|.+.+.+ +.+. +
T Consensus 236 ~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~---~~~~---v 304 (368)
T 2q58_A 236 LNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGK---NSSL---V 304 (368)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTT---CHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCC---CHHH---H
Confidence 45799999999999999999999975 89999999999999999999998754 33 44555443 2333 4
Q ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHH---HHHHHHhhhcCC
Q psy3877 92 ISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLE---AILDELLTWDTP 141 (145)
Q Consensus 92 ~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~---~ll~~l~~~~~~ 141 (145)
.+++...+..+.+.+.++++.+++.+.++.+|.+..++ .+++.++++++.
T Consensus 305 k~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~ 357 (368)
T 2q58_A 305 KDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITN 357 (368)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 45556666777777888889999999999999876655 466777777764
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.83 E-value=4.6e-21 Score=150.27 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=74.3
Q ss_pred hHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHh
Q psy3877 2 MAIRLMQLFSDT-KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQ 80 (145)
Q Consensus 2 ~~~rl~~~~~~~-~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~ 80 (145)
++++++...++. .+.+.+||.++|+||||+||++|++++++.+|||+|+|++ |+|+|++++
T Consensus 182 ~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~---------------- 243 (284)
T 2ftz_A 182 FCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVG---------------- 243 (284)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHC----------------
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHH----------------
Confidence 355666666653 2389999999999999999999999999999999999999 999999986
Q ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 81 RTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 81 ~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
+++++..+++|.++|++.|+.+|+ +.++..+..+.++++.|
T Consensus 244 --------------------l~~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 244 --------------------IQXAREMADXYYEEVLXGIESEGL-FRTLFLLXELXQMVEER 284 (284)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHcC
Confidence 456789999999999999999997 66655256777776653
No 37
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.83 E-value=1.6e-20 Score=148.75 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=72.5
Q ss_pred hHHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++. .+.+..||.++|+||||+||++|++++++.+||++|+|+++||+|||++++++.
T Consensus 191 ~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~---------- 260 (309)
T 3pde_A 191 YAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIG---------- 260 (309)
T ss_dssp HHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHH----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHH----------
Confidence 356666666654 468999999999999999999999999999999999999999999999997654
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPDS 143 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~~ 143 (145)
+...++++.++|.+.|+.+|.+-..+. +..+.+|++.|.
T Consensus 261 --------------------------a~~~~~~~~~~a~~~l~~~~~~~~~~~-L~~l~~~~~~r~ 299 (309)
T 3pde_A 261 --------------------------ANQALIDTIHSGQAALQGLPTSTQRDD-LAAFFSYFDTER 299 (309)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTSCCCHHHHH-HHGGGGGSCTTT
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHhhhccCHHH-HHHHHHHHHHhh
Confidence 233456667778888888665533334 667888887763
No 38
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.81 E-value=3.7e-20 Score=145.85 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=82.1
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++.+ +.+..||.++|+||||+||++|+++++. || |+.+||.|+|+|++++..+
T Consensus 173 ~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~~-------- 238 (295)
T 3ipi_A 173 ISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTSK-------- 238 (295)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcCc--------
Confidence 3567777777653 4799999999999999999999999863 54 6689999999999987531
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
.+++++|++.+++|.++|++.|+.||+++.++.| ..+.++++.|
T Consensus 239 --------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L-~~l~~~~~~~ 282 (295)
T 3ipi_A 239 --------------------EEALKKSIDCVKLHVAAAKETLETFRECPARDKL-FQITDYITVD 282 (295)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHH-HHHHHHTTGG
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHHHh
Confidence 1359999999999999999999999999988876 4677776654
No 39
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.76 E-value=2e-18 Score=136.83 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=63.3
Q ss_pred HHHHHhhcCCC----h-HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 3 AIRLMQLFSDT----K-SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 3 ~~rl~~~~~~~----~-~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++....++. . +.+..||.++|+||||+||++|++++++.+||+.|+ ++||+|||++++++.
T Consensus 196 a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~~l~~---------- 263 (311)
T 3llw_A 196 SLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLLGLER---------- 263 (311)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHHCHHH----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHHHHHH----------
Confidence 45666665543 2 679999999999999999999999999999999887 999999999987654
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGG-NPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~-~~~~~~ll~~l~~~~~~~ 142 (145)
+...++++.++|.+.|+.|+. +......+..+.++++.|
T Consensus 264 --------------------------a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r 303 (311)
T 3llw_A 264 --------------------------ANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKG 303 (311)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC-
T ss_pred --------------------------HHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhc
Confidence 234456666777778877543 222134455666666554
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.72 E-value=1.6e-17 Score=130.53 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=40.4
Q ss_pred HHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcC
Q psy3877 3 AIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSR 68 (145)
Q Consensus 3 ~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~ 68 (145)
++++....++. .+.+..||.++|+||||+||++|++++++.+||+.+.| +||.|||++++++.+
T Consensus 182 a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~l~~a 249 (291)
T 3npk_A 182 ALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLGLEQA 249 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHHHHHh
Confidence 45666666654 35799999999999999999999999999999999887 999999999988764
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.62 E-value=3.7e-16 Score=122.71 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=72.6
Q ss_pred HHHHhhcC---CChHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHh
Q psy3877 4 IRLMQLFS---DTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQ 80 (145)
Q Consensus 4 ~rl~~~~~---~~~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~ 80 (145)
++++...+ ...+.+..||.++|+||||+||++|++++ ||+ |+++||.|+|+++ +..+.
T Consensus 177 ~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~--~~~g~---------- 237 (289)
T 2azj_A 177 TVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY--REGKL---------- 237 (289)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH--TTTCH----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH--HcCCH----------
Confidence 44444444 13468999999999999999999999996 564 8999999999999 22221
Q ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHhhhcCC
Q psy3877 81 RTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGG-NPLLEAILDELLTWDTP 141 (145)
Q Consensus 81 ~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~-~~~~~~ll~~l~~~~~~ 141 (145)
+. + .+..+++|.++|++.|+.+|. ++.++.| ..+.++++.
T Consensus 238 -----~~---a------------~~~~a~~~~~~A~~~L~~lp~~~~~~~~L-~~l~~~~~~ 278 (289)
T 2azj_A 238 -----EE---Y------------VRSVYLEYKQKYDELISNIPFQSKYLSEI-RSLPEFLAN 278 (289)
T ss_dssp -----HH---H------------HHHHHHHHHHHHHHHHHTSCCCGGGHHHH-HTHHHHHHH
T ss_pred -----HH---H------------HHHHHHHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHh
Confidence 00 0 124899999999999999998 6667665 456655543
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.60 E-value=2.3e-15 Score=118.35 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=71.7
Q ss_pred hHHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHH
Q psy3877 2 MAIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQI 77 (145)
Q Consensus 2 ~~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~ 77 (145)
++++++...++. .+.+..||.++|+||||+||++|+++++ |.|+|+++
T Consensus 199 ~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~-------------- 250 (293)
T 2j1p_A 199 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLM-------------- 250 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH--------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHH--------------
Confidence 356777777764 3579999999999999999999999874 89999997
Q ss_pred HHhcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhhcCCC
Q psy3877 78 LRQRTRDVEVKKYCISLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILDELLTWDTPD 142 (145)
Q Consensus 78 l~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~~l~~~~~~~ 142 (145)
++++|++.++++.++|++.|+.+| ++.++. +..+.++++.|
T Consensus 251 ----------------------gle~a~~~a~~~~~~A~~~L~~l~-~~~~~~-L~~l~~~~~~R 291 (293)
T 2j1p_A 251 ----------------------GLEKSREFAEKLNTEARDQLLGFD-SDKVAP-LLALANYIANR 291 (293)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHTTTSC-TTTTHH-HHHHHHHHHHC
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHhCC-cHHHHH-HHHHHHHHHhh
Confidence 578999999999999999999998 344555 45677776655
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.14 E-value=3e-12 Score=100.16 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=36.8
Q ss_pred hHHHHHhhcCCCh---HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhC
Q psy3877 2 MAIRLMQLFSDTK---SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEG 55 (145)
Q Consensus 2 ~~~rl~~~~~~~~---~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eG 55 (145)
++++++...++.+ +.++.||.++|+||||+||++|+++++. +||++|+||+++
T Consensus 171 ~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 171 AALVMPLVILGRRELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 3566777666643 6899999999999999999999999875 689999999999
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=98.25 E-value=1.3e-06 Score=67.88 Aligned_cols=33 Identities=3% Similarity=-0.039 Sum_probs=27.1
Q ss_pred hHHHHHhhcCCCh----HHHHHHHHHHHHHHHHHhch
Q psy3877 2 MAIRLMQLFSDTK----SDFTTLAGILGLYFQVRDDY 34 (145)
Q Consensus 2 ~~~rl~~~~~~~~----~~l~~~G~~lG~afQI~DD~ 34 (145)
++++++...++.+ +.+.+||.++|+||||+||.
T Consensus 185 ~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 185 CGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777653 47999999999999999996
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=97.94 E-value=4.6e-06 Score=64.63 Aligned_cols=34 Identities=3% Similarity=-0.052 Sum_probs=27.3
Q ss_pred hHHHHHhhcCCC----hHHHHHHHHHHHHHHHHHhchh
Q psy3877 2 MAIRLMQLFSDT----KSDFTTLAGILGLYFQVRDDYC 35 (145)
Q Consensus 2 ~~~rl~~~~~~~----~~~l~~~G~~lG~afQI~DD~l 35 (145)
+++++....++. .+.+.+||.++|+||||+||++
T Consensus 186 ~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 186 CGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666666664 3579999999999999999997
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.98 E-value=0.32 Score=37.33 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHHHHH
Q psy3877 15 SDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVEVKKYCISL 94 (145)
Q Consensus 15 ~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~~~~~~~~~~~i~~~ 94 (145)
+.....+.++|.|+|+.|=+.|+ +.|+..|++-+|.=..-+..-..+.+ +. +..++. + ..
T Consensus 157 ~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YLP~d~l~~~gv~~e~l---~~-~~~~~~-~---~~- 216 (293)
T 3acx_A 157 HQTYDVARRLGESLQLINILRDV-----------GEDFENERIYFSKQRLKQYEVDIAEV---YQ-NGVNNH-Y---ID- 216 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCCSCHHHHHHHTCCHHHH---HH-HCCCHH-H---HH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEEeCHHHHHHcCCCHHHh---cc-cCCCHH-H---HH-
Confidence 67889999999999999966663 67888999999986555544222223 22 223322 2 22
Q ss_pred HHHcChHHHHHHHHHHHHHHHHHHHhccCCC
Q psy3877 95 LDRFGSFEHTREVLKELDVSARTEVARLGGN 125 (145)
Q Consensus 95 l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 125 (145)
.+......++.+..+|...+..+|..
T Consensus 217 -----~~~~l~~~A~~~~~~a~~~~~~lp~~ 242 (293)
T 3acx_A 217 -----LWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred -----HHHHHHHHHHHHHHHHHHhHHhCCHH
Confidence 24455567888899999999988875
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.43 E-value=0.26 Score=37.97 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHH
Q psy3877 12 DTKSDFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVEVKKYC 91 (145)
Q Consensus 12 ~~~~~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~~~~~~~~~~~i 91 (145)
..++....++.++|.|||+.|=+.|+ +.|+..|.+-+|.-..-+..-..+.+ . .+..++. +
T Consensus 149 ~~~~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~~~l~~~gv~~~dl---~-~~~~~~~-~--- 209 (294)
T 4hd1_A 149 CLDDERARLSDATCTALQVANHMQDI-----------DRDLALGRIYVPRADLEQFGATLDDI---R-ARRATDG-V--- 209 (294)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCBCSCHHHHHTTTCCHHHH---H-TTCCCHH-H---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc-----------hhhhccCceeCCHHHHHHcCCCHHHH---h-cCCCCHH-H---
Confidence 34677788999999999999877774 67888999999987665554221222 2 2333332 2
Q ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhccCCC
Q psy3877 92 ISLLDRFGSFEHTREVLKELDVSARTEVARLGGN 125 (145)
Q Consensus 92 ~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 125 (145)
..+ +..-...++.+.++|...+..+|..
T Consensus 210 ~~~------~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 210 RRC------IALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp HHH------HHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 222 3344556777888888888877743
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=92.05 E-value=0.26 Score=38.99 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHHHHHH
Q psy3877 16 DFTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHAIQSRPDDRQVIQILRQRTRDVEVKKYCISLL 95 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~al~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l 95 (145)
.....+.++|.|||+.|=+.|+ +.|+..|++-+|.=..-+..-..+.| + .+.. .+. +..
T Consensus 172 ~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl---~-~~~~-~~~---~~~-- 230 (343)
T 3vj8_A 172 EDTERANSMGLFLQKTNIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDF---A-KPEN-IDL---AVQ-- 230 (343)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGG---G-SGGG-HHH---HHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHH---h-cccC-CHH---HHH--
Confidence 4568899999999999977764 68888999999986554443111111 1 1211 122 222
Q ss_pred HHcChHHHHHHHHHHHHHHHHHHHhccCCC
Q psy3877 96 DRFGSFEHTREVLKELDVSARTEVARLGGN 125 (145)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 125 (145)
.+..-...++.+..+|...+..+|..
T Consensus 231 ----~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 231 ----CLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp ----HHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 24555567888888888888888764
No 49
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=47.01 E-value=17 Score=28.32 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhchhccccCchhcCCCcchhHhhCcchHHHHHH
Q psy3877 17 FTTLAGILGLYFQVRDDYCNLCSKEYSENKSFCEDLTEGKFSFPIIHA 64 (145)
Q Consensus 17 l~~~G~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~eGk~TlPli~a 64 (145)
+...-+.+=.++=|.||+.| .+|+|.|++|+-..|.
T Consensus 72 ~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 72 AAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcC
Confidence 33344567788999999987 3566677776665544
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=46.50 E-value=15 Score=28.67 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.++-|.||+.|
T Consensus 77 ~~A~aiEliH~asLiHDDI~D 97 (341)
T 3mzv_A 77 HLAATVEFIHTATLLHDDVVD 97 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCccC
Confidence 344445567788999999977
No 51
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=44.68 E-value=23 Score=27.90 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.++-|.||+.|
T Consensus 69 ~~A~aiEliH~asLiHDDI~D 89 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIID 89 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCcccc
Confidence 444455667788999999987
No 52
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=42.55 E-value=22 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhchhc
Q psy3877 17 FTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 17 l~~~G~~lG~afQI~DD~lD 36 (145)
+...-+.+=.|.-|.||+.|
T Consensus 73 ~A~aiEliH~aSLIHDDImD 92 (285)
T 4fp4_A 73 AAAIVELLHVVSLLQDDVMD 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCC
Confidence 33444567789999999977
No 53
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=41.70 E-value=24 Score=27.05 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.+.=|.||+.|
T Consensus 66 ~~A~avEliH~asLIHDDi~D 86 (295)
T 3ipi_A 66 NAALAVEMMHSASLIHDDLLD 86 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCcC
Confidence 444455667789999999987
No 54
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=36.33 E-value=28 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhchhc
Q psy3877 15 SDFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 15 ~~l~~~G~~lG~afQI~DD~lD 36 (145)
..+...-+.+=.++=|.||+.|
T Consensus 88 ~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 88 QKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHCcccC
Confidence 3455555667789999999987
No 55
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=33.71 E-value=28 Score=27.30 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.++=|.||+.|
T Consensus 78 ~~A~avEliH~asLiHDDI~D 98 (352)
T 3nf2_A 78 PGAVAVELVHNFSLLHDDLMD 98 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 344455567788999999988
No 56
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=32.80 E-value=31 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.|+-|.||+.|
T Consensus 70 ~~A~avEliH~asLiHDDi~D 90 (342)
T 1wy0_A 70 YPAVAIELIHNYSLVHDDIMD 90 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCccc
Confidence 344445566778899999988
No 57
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=30.57 E-value=32 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhchhc
Q psy3877 16 DFTTLAGILGLYFQVRDDYCN 36 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~lD 36 (145)
.+...-+.+=.++=|.||+.|
T Consensus 61 ~~A~aiEliH~asLiHDDi~D 81 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID 81 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 344455667788999999977
No 58
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.90 E-value=1.1e+02 Score=19.75 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHhcCCchH-HHHHHHHhcCCCHHHHHHHHHHHHHc
Q psy3877 60 PIIHAIQSRPDDR-QVIQILRQRTRDVEVKKYCISLLDRF 98 (145)
Q Consensus 60 Pli~al~~~~~~~-~l~~~l~~~~~~~~~~~~i~~~l~~~ 98 (145)
=+||++...|..+ ++..-+.+...+..+...+..++.+-
T Consensus 17 RvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eV 56 (100)
T 2e5n_A 17 RVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQV 56 (100)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3678777766543 67776766666666666666665543
No 59
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=29.28 E-value=25 Score=24.27 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q psy3877 21 AGILGLYFQVR 31 (145)
Q Consensus 21 G~~lG~afQI~ 31 (145)
|.-+|+||||.
T Consensus 149 gnmmgvafqil 159 (206)
T 1s2x_A 149 GNMMGVAFQIL 159 (206)
T ss_dssp HHHHHHHHHHT
T ss_pred Ccchheeeeee
Confidence 66799999983
No 60
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=29.28 E-value=95 Score=20.10 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHhcCCchH-HHHHHHHhcCCCHHHHHHHHHHHHHcC
Q psy3877 61 IIHAIQSRPDDR-QVIQILRQRTRDVEVKKYCISLLDRFG 99 (145)
Q Consensus 61 li~al~~~~~~~-~l~~~l~~~~~~~~~~~~i~~~l~~~g 99 (145)
|||++...|..+ +|..-+.+...+..+...+..++.+-.
T Consensus 17 vIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA 56 (104)
T 2doa_A 17 VLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVA 56 (104)
T ss_dssp HHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 677777766533 677667666666666666666666543
No 61
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=27.01 E-value=49 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhch--hc
Q psy3877 17 FTTLAGILGLYFQVRDDY--CN 36 (145)
Q Consensus 17 l~~~G~~lG~afQI~DD~--lD 36 (145)
+...-+.+=.++-|.||+ .|
T Consensus 76 ~A~avEliH~asLIHDDIP~mD 97 (302)
T 3p8l_A 76 VAASLEMIHTYSLIHDDLPAMD 97 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHHCCchhcc
Confidence 334445677889999999 88
No 62
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=25.82 E-value=47 Score=25.76 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhch--hccccCchhcCCCcchhHhhCcchHHHHH
Q psy3877 16 DFTTLAGILGLYFQVRDDY--CNLCSKEYSENKSFCEDLTEGKFSFPIIH 63 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~eGk~TlPli~ 63 (145)
.+...-+.+=.+.-|.||+ .| .+|+|.|+.|+-..|
T Consensus 98 ~~A~aiEliH~aSLIHDDIP~mD------------~s~~RRG~pt~h~~~ 135 (324)
T 3uca_A 98 TPAMAIEMIHTYSLIHDDLPCMD------------NDDLRRGKPTNHKVF 135 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCccHHHhc
Confidence 3444456677889999999 88 345566666654443
No 63
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=23.75 E-value=1.4e+02 Score=18.48 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q psy3877 93 SLLDRFGSFEHTREVLKELDVSARTEVARLGGNPLLEAILD 133 (145)
Q Consensus 93 ~~l~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~ll~ 133 (145)
..+.+.|...-.+...+.+.-+..++|..+...|+..-+++
T Consensus 17 avltqygvtgpnraiyqgfglkvaralnr~g~gpalvnmin 57 (100)
T 3f2e_A 17 AVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMIN 57 (100)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHhcCCCccHHHHhhhhHHHHHHHHhcCCchHHHHHHh
Confidence 33444444444444444554454555555554444443333
No 64
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=23.75 E-value=61 Score=24.95 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhch--hccccCchhcCCCcchhHhhCcchHHHHH
Q psy3877 17 FTTLAGILGLYFQVRDDY--CNLCSKEYSENKSFCEDLTEGKFSFPIIH 63 (145)
Q Consensus 17 l~~~G~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~eGk~TlPli~ 63 (145)
+...-+.+=.+.=|.||+ .| .+|+|.|++|+=..|
T Consensus 75 ~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~ 111 (309)
T 3pde_A 75 PVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKF 111 (309)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhc
Confidence 344445677789999999 88 345566666654443
No 65
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.60 E-value=1.7e+02 Score=19.74 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHH------HHHHhc-cCCCHHHHHHHHHHhhhcCC
Q psy3877 87 VKKYCISLLDRFGSFEHTREVLKELDVSA------RTEVAR-LGGNPLLEAILDELLTWDTP 141 (145)
Q Consensus 87 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~A------~~~L~~-lp~~~~~~~ll~~l~~~~~~ 141 (145)
.+..++++..+.|..-..+.+++....+- ...|.. ||.+|++.+ ..++-..++
T Consensus 69 VI~flR~fY~e~~~sP~iR~L~K~~~~~~g~~kgns~yLy~LFP~GPaKqa--~KIAGLPKP 128 (132)
T 1yx3_A 69 IINFLREYYEEYQIAPAVRVLTKAVGKKLGKEKGNSKYLYSLFPYGPAKQA--CRFAGLPKP 128 (132)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSSSCCCHHHHHHHCTTCHHHHH--HHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHhCcccchHHHHHHHCCCCHHHHH--HHHhcCCCC
Confidence 45667777788887666666666554444 244544 899998876 466666554
No 66
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=23.21 E-value=56 Score=25.34 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhch--hccccCchhcCCCcchhHhhCcchHHHH
Q psy3877 16 DFTTLAGILGLYFQVRDDY--CNLCSKEYSENKSFCEDLTEGKFSFPII 62 (145)
Q Consensus 16 ~l~~~G~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~eGk~TlPli 62 (145)
.+...-+.+=.+.=|.||+ +| .+|+|.|+.|.-..
T Consensus 74 ~~A~avEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~ 110 (324)
T 3ts7_A 74 GPACAVEFIHVYSLIHDDLPAMD------------DDDLRRGKPTCHKA 110 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccc------------CCCccCCCCchhhh
Confidence 3444455677889999999 77 34555666554433
No 67
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=22.75 E-value=1.2e+02 Score=17.68 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcChHHHHH
Q psy3877 86 EVKKYCISLLDRFGSFEHTR 105 (145)
Q Consensus 86 ~~~~~i~~~l~~~g~~~~~~ 105 (145)
+....|++.+++.|+++...
T Consensus 45 et~~~I~~F~~~~gG~eav~ 64 (65)
T 2lnh_A 45 ETSKVIYDFIEKTGGVEAVK 64 (65)
T ss_dssp TTHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccC
Confidence 34567999999999998653
No 68
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=21.86 E-value=60 Score=25.07 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhch--hc
Q psy3877 19 TLAGILGLYFQVRDDY--CN 36 (145)
Q Consensus 19 ~~G~~lG~afQI~DD~--lD 36 (145)
..-+.+=.+.=|.||+ +|
T Consensus 72 ~avEliH~aSLIHDDip~mD 91 (317)
T 4f62_A 72 AALESIHAYSLIHDDLPAMD 91 (317)
T ss_dssp HHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHCCccccc
Confidence 3344566789999999 67
Done!