BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3878
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
           Complex With Bound Ferrichrome-Iron
          Length = 725

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 184 PAGGWLDMSGGMHAQMAANYAASSDYSLSHSIASNHLLTSGQHLLNDTYKSMLPAQ 239
           P G +  + GG          A +  S S ++  ++  T  ++  + TYK   PAQ
Sbjct: 564 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQ 619


>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
           Complex With Bound Ferrichrome-Iron
          Length = 705

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 184 PAGGWLDMSGGMHAQMAANYAASSDYSLSHSIASNHLLTSGQHLLNDTYKSMLPAQ 239
           P G +  + GG          A +  S S ++  ++  T  ++  + TYK   PAQ
Sbjct: 544 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQ 599


>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
           Cgp4832
          Length = 707

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 184 PAGGWLDMSGGMHAQMAANYAASSDYSLSHSIASNHLLTSGQHLLNDTYKSMLPAQ 239
           P G +  + GG          A +  S S ++  ++  T  ++  + TYK   PAQ
Sbjct: 546 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQ 601


>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
          Length = 723

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 184 PAGGWLDMSGGMHAQMAANYAASSDYSLSHSIASNHLLTSGQHLLNDTYKSMLPAQ 239
           P G +  + GG          A +  S S ++  ++  T  ++  + TYK   PAQ
Sbjct: 562 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQ 617


>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
 pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
           In Complex Delta Two-Albomycin
 pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
 pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
           Outer Membrane Receptor For Ferrichrome
 pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
           Outer Membrane Receptor For Ferrichrome
          Length = 725

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 184 PAGGWLDMSGGMHAQMAANYAASSDYSLSHSIASNHLLTSGQHLLNDTYKSMLPAQ 239
           P G +  + GG          A +  S S ++  ++  T  ++  + TYK   PAQ
Sbjct: 564 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQ 619


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,233,114
Number of Sequences: 62578
Number of extensions: 294464
Number of successful extensions: 551
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 6
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)