BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3878
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VA40|SP9_XENTR Transcription factor Sp9 OS=Xenopus tropicalis GN=sp9 PE=2 SV=1
Length = 422
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 113/248 (45%), Gaps = 42/248 (16%)
Query: 16 EHPGLRGTPLAMLAAQCNKLSN---KSPPPLADAAVGKGFHPWKKSPQSAGGNSTTPAQL 72
E P TPLAMLAA CNK+ N S P + A GFHPWK+S S S+
Sbjct: 8 EEPRFGTTPLAMLAATCNKIGNTSPLSSLPESSAFAKGGFHPWKRSSSSCSLGSSLGGFA 67
Query: 73 GSLSPTSQRNTNSSTPNNT-----STSSNNNNNTSYTSRVITSSCAATPTYSTSGDIYFS 127
+ S S T + N+ STS ++ +S S + +S+ +P S + S
Sbjct: 68 VATSRASGALTGGTATANSAFCLASTSPTSSAFSSDYSGLFSSASGVSPQESAGQSAFIS 127
Query: 128 G--SQNDNSHQLLGKAVESHHLGSMYSRHPYESWPFNTMTSSSHHKPGDGMNTGWWDVPA 185
+ + + +G A HPYESW S H G + WWDV A
Sbjct: 128 KVHASAEGLYPRVGMA------------HPYESW-----YKSGFHSDVSGGASAWWDVHA 170
Query: 186 GG---WLDM---SGGMHAQMAAN---YAASSDY-SLSH----SIASNHLLTSGQHLL-ND 230
G WL++ G +H+ AA+ A S D+ SL+H S ++HLL GQHLL D
Sbjct: 171 AGPSTWLEVQNTQGALHSGAAAHGQLGAYSPDFSSLTHSAFSSTGASHLLPGGQHLLTQD 230
Query: 231 TYKSMLPA 238
+K +LP+
Sbjct: 231 AFKPVLPS 238
>sp|Q6NW96|SP9_DANRE Transcription factor Sp9 OS=Danio rerio GN=sp9 PE=2 SV=1
Length = 439
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 116/275 (42%), Gaps = 86/275 (31%)
Query: 16 EHPGLRGTPLAMLAAQCNKLSNKSP---PPLADAAVGKGFHPWKKSPQSAGGNSTTPA-- 70
E P TPLAMLAA CNK+ N SP P + A GFHPWK+S S S+ P
Sbjct: 8 EEPRFGTTPLAMLAATCNKIGNTSPLTTLPDSSAFSKGGFHPWKRSSSSCNLGSSLPGFT 67
Query: 71 ---------------------QLGSLSPTS---QRNTNSSTPNNTSTSSNNNNNTSYTSR 106
L S SPTS +S N TS SS ++ +++ S+
Sbjct: 68 VATSRSTSGLTTTTGAGNSAFCLASTSPTSSAFSAEYSSLFSNTTSVSSQDSGQSAFISK 127
Query: 107 VITSSCAATPTYSTSGDIYFSGSQNDNSHQLLGKAVESHHLGSMYSRHPYESWPFNTMTS 166
V +S+ D + +G A HPYESW + S
Sbjct: 128 VHSSA--------------------DTLYPRVGMA------------HPYESWYKSGFHS 155
Query: 167 SSHHKPGDGMNTGWWDVPA--GGWLDM---SGGMHAQM-----AANYAASSDY-----SL 211
+ +G +T WWDV G WL++ +G + + + A ++ S Y SL
Sbjct: 156 TISGDVANGAST-WWDVHTNPGSWLEVQNPAGTLQSSLHSGTPQAIHSQLSGYNPDFSSL 214
Query: 212 SHSIAS--------NHLLTSGQHLL-NDTYKSMLP 237
+HS S +HLL++ QHLL + +K+++P
Sbjct: 215 THSAFSSTGISPTASHLLSTSQHLLTQEGFKTVIP 249
>sp|Q6P0J3|SP8_DANRE Transcription factor Sp8 OS=Danio rerio GN=sp8b PE=2 SV=1
Length = 437
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 67/253 (26%)
Query: 27 MLAAQCNKLSNKSPPPLADAA----VGKGFHPWKKSPQSAGGNSTTPAQL----GSLSPT 78
MLAA CNK+ + SP P + + GKGFHPWK++ S+ ++ + G LS +
Sbjct: 1 MLAATCNKIGSPSPSPSSISDNSSSFGKGFHPWKRATASSCSLGSSLSSFTRNGGGLSDS 60
Query: 79 SQRNTNSSTPN---NTSTSSNNNNNTSYTSRVITSSCAATPTYSTSGDIYFSGSQNDNSH 135
NT++ + + TSSN++ Y+ + TS S + + SH
Sbjct: 61 FGTNTSTGSSAFSLTSGTSSNSHFGNDYS------------VFQTS----VSNNSQEPSH 104
Query: 136 Q--LLGK---AVESHHLGSMYSR----HPYESWPFNTMTSSSHHKP-GDGMNTG---WWD 182
Q + K +V+S L S+Y R HPYESW SS P GD TG WWD
Sbjct: 105 QPMFISKVHTSVDS--LQSIYPRMSVAHPYESW----FKSSHPGIPTGDVGTTGASAWWD 158
Query: 183 VPAGGWLDM-------------SGGMHAQMAANYAA-SSDY-SLSHSI----ASNHLLTS 223
V A GW+D+ SGG+ + + +SDY SLSHS AS HLLT+
Sbjct: 159 VGA-GWIDVQNPNGAALQTSLHSGGLQTSLHSPLGGYNSDYSSLSHSAFSTSASPHLLTT 217
Query: 224 GQHLLNDTYKSML 236
GQHL+ D +K +L
Sbjct: 218 GQHLM-DGFKPVL 229
>sp|Q64HY3|SP9_MOUSE Transcription factor Sp9 OS=Mus musculus GN=Sp9 PE=2 SV=1
Length = 484
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 119/262 (45%), Gaps = 44/262 (16%)
Query: 16 EHPGLRGTPLAMLAAQCNKLSNKSP---PPLADAAVGKGFHPWKKSPQSAGGNSTTPAQL 72
E P TPLAMLAA CNK+ N SP P + A GFHPWK+S S S+
Sbjct: 8 EEPRFGTTPLAMLAATCNKIGNTSPLTTLPESSAFAKGGFHPWKRSSSSCNLGSSLSGF- 66
Query: 73 GSLSPTSQRNTNSSTPNNTSTSSNNNNNTSYTSRVITSSCAATPTYSTSGDIYFSGS--Q 130
+++ + + + + + + S+ +TS TS +S + S + +G Q
Sbjct: 67 -AVATGGRGSGSLAGGSGAANSAFCLASTSPTSSAFSSDYGGLFSNSAAAAAAAAGVSPQ 125
Query: 131 NDNSHQLLGKAVESHHLGSMYSR----HPYESW---PFNTMTSSSHHKPGDGMNTGWWDV 183
V + +Y R HPYESW F++ ++ + +G + WWDV
Sbjct: 126 EAGGQSAFISKVHTTAADGLYPRVGMAHPYESWYKSGFHSTLAAG--EVTNGAASSWWDV 183
Query: 184 PA--GGWLDM---SGGMHAQMAANYAASS----------DY-SLSHS-----------IA 216
+ G WL++ +GG+ + + + +S D+ SL+HS A
Sbjct: 184 HSSPGSWLEVQNPAGGLQSSLHSGAPQASLHSQLGTYNPDFSSLTHSAFSSTGLGSSAAA 243
Query: 217 SNHLLTSGQHLL-NDTYKSMLP 237
++HLL++ QHLL D +K +LP
Sbjct: 244 ASHLLSTSQHLLAQDGFKPVLP 265
>sp|P0CG40|SP9_HUMAN Transcription factor Sp9 OS=Homo sapiens GN=SP9 PE=3 SV=1
Length = 484
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 118/262 (45%), Gaps = 44/262 (16%)
Query: 16 EHPGLRGTPLAMLAAQCNKLSNKSP---PPLADAAVGKGFHPWKKSPQSAGGNSTTPAQL 72
E P TPLAMLAA CNK+ N SP P + A GFHPWK+S S S+
Sbjct: 8 EEPRFGTTPLAMLAATCNKIGNTSPLTTLPESSAFAKGGFHPWKRSSSSCNLGSSLSGF- 66
Query: 73 GSLSPTSQRNTNSSTPNNTSTSSNNNNNTSYTSRVITSSCAATPTYSTSGDIYFSGS--Q 130
+++ + + + + + S+ +TS TS +S + S + +G Q
Sbjct: 67 -AVATGGRGSGGLAGGSGAANSAFCLASTSPTSSAFSSDYGGLFSNSAAAAAAAAGVSPQ 125
Query: 131 NDNSHQLLGKAVESHHLGSMYSR----HPYESW---PFNTMTSSSHHKPGDGMNTGWWDV 183
V + +Y R HPYESW F++ ++ + +G + WWDV
Sbjct: 126 EAGGQSAFISKVHTTAADGLYPRVGMAHPYESWYKSGFHSTLAAG--EVTNGAASSWWDV 183
Query: 184 PA--GGWLDM---SGGMHAQMAANYAASS----------DY-SLSHS-----------IA 216
+ G WL++ +GG+ + + + +S D+ SL+HS A
Sbjct: 184 HSSPGSWLEVQNPAGGLQSSLHSGAPQASLHSQLGTYNPDFSSLTHSAFSSTGLGSSAAA 243
Query: 217 SNHLLTSGQHLL-NDTYKSMLP 237
++HLL++ QHLL D +K +LP
Sbjct: 244 ASHLLSTSQHLLAQDGFKPVLP 265
>sp|Q64HY5|SP8_CHICK Transcription factor Sp8 OS=Gallus gallus GN=SP8 PE=2 SV=1
Length = 480
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 36/145 (24%)
Query: 154 HPYESWPFNTMTSSSHHKPGDGMNTGWWDVPAGGWLDM----------------SGGMHA 197
HPYESW + + + G + WWDV AG W+D+ +GG+ +
Sbjct: 170 HPYESWFKPSHPGLAAGEVGSAGASSWWDVGAG-WIDVQSPNGAAALPGSLHPAAGGLQS 228
Query: 198 QMAANYAA-SSDYS-LSHSI----ASNHLLT-SGQHLLNDTYKSMLPAQSSFSIPHP--- 247
+ + +SDYS L HS AS+HLL+ +GQHL+ D +K +LP S P P
Sbjct: 229 SLHSPLGGYNSDYSGLGHSAFGGGASSHLLSPAGQHLM-DGFKPVLPGSYPDSAPSPLAG 287
Query: 248 --------TPPTPAPTTPTPRTRLY 264
P P +P R Y
Sbjct: 288 AGGSMLGGGPAAPLSASPRSSARRY 312
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 27 MLAAQCNKLSNKSPPPLAD----AAVGKGFHPWKK 57
MLAA CNK+ + SP P A ++ GKGFHPWK+
Sbjct: 1 MLAATCNKIGSPSPSPSALSDSASSFGKGFHPWKR 35
>sp|Q8BMJ8|SP8_MOUSE Transcription factor Sp8 OS=Mus musculus GN=Sp8 PE=2 SV=1
Length = 486
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 40/134 (29%)
Query: 147 LGSMYSR----HPYESWPFNTMTSSSHHKPGDGMNTG------WWDVPAGGWLDM----- 191
L +Y R HPYESW SH G + G WWDV AG W+D+
Sbjct: 172 LQGIYPRVGMAHPYESW-----FKPSHPGLGAAADVGSAGASSWWDVGAG-WIDVQNPNG 225
Query: 192 -----------SGGMHAQMAANYAA-SSDYS-LSHSI----ASNHLLT-SGQHLLNDTYK 233
+GG+ + + +SDYS LSHS AS+HLL+ +GQHL+ D +K
Sbjct: 226 AAALPGSLHPAAGGLQTSLHSPLGGYNSDYSGLSHSAFSSGASSHLLSPAGQHLM-DGFK 284
Query: 234 SMLPAQSSFSIPHP 247
+LP S P P
Sbjct: 285 PVLPGSYPDSAPSP 298
>sp|Q8IXZ3|SP8_HUMAN Transcription factor Sp8 OS=Homo sapiens GN=SP8 PE=2 SV=3
Length = 490
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 61/134 (45%), Gaps = 40/134 (29%)
Query: 147 LGSMYSR----HPYESWPFNTMTSSSHHKPGDGMNTG------WWDVPAGGWLDM----- 191
L +Y R HPYESW SH G G WWDV AG W+D+
Sbjct: 172 LQGIYPRVGMAHPYESW-----FKPSHPGLGAAGEVGSAGASSWWDVGAG-WIDVQNPNS 225
Query: 192 -----------SGGMHAQMAANYAA-SSDYS-LSHSI----ASNHLLT-SGQHLLNDTYK 233
+GG+ + + +SDYS LSHS AS+HLL+ +GQHL+ D +K
Sbjct: 226 AAALPGSLHPAAGGLQTSLHSPLGGYNSDYSGLSHSAFSSGASSHLLSPAGQHLM-DGFK 284
Query: 234 SMLPAQSSFSIPHP 247
+LP S P P
Sbjct: 285 PVLPGSYPDSAPSP 298
>sp|Q54HS3|SET1_DICDI Histone-lysine N-methyltransferase set1 OS=Dictyostelium discoideum
GN=set1 PE=1 SV=1
Length = 1486
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 60 QSAGGNSTTPAQLGSLSPTSQRNTNSSTPNNTSTSSNNNNNTS 102
+S+GGN +L SL T+ NT +PNN +T++ +++N S
Sbjct: 182 RSSGGNWIFVGKLPSLQSTTTDNTTLMSPNNATTTNGSSSNIS 224
>sp|Q5XGT8|SP8_XENLA Transcription factor Sp8 OS=Xenopus laevis GN=sp8 PE=2 SV=1
Length = 500
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 27 MLAAQCNKLSNKSPPPLA----DAAVGKGFHPWKK 57
MLAA CNK+ + SP P + + GKGFHPWK+
Sbjct: 1 MLAATCNKIGSPSPSPSSLSDTSGSFGKGFHPWKR 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,660,408
Number of Sequences: 539616
Number of extensions: 5626852
Number of successful extensions: 82738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 456
Number of HSP's that attempted gapping in prelim test: 39112
Number of HSP's gapped (non-prelim): 28139
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)