Query psy3878
Match_columns 299
No_of_seqs 66 out of 68
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:42:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kw0_A CCMH protein; oxidoredu 33.8 11 0.00038 29.8 0.6 18 265-284 60-77 (90)
2 2hl7_A Cytochrome C-type bioge 33.1 11 0.00039 29.2 0.6 15 265-279 63-77 (84)
3 1zej_A HBD-9, 3-hydroxyacyl-CO 12.0 73 0.0025 28.8 1.2 30 17-57 242-273 (293)
4 2jwg_A VSG, variant surface gl 5.9 1.8E+02 0.0061 20.4 0.8 10 29-38 5-14 (46)
5 3mog_A Probable 3-hydroxybutyr 5.7 2.4E+02 0.0083 27.1 1.9 31 16-57 255-287 (483)
6 1wir_A Protein arginine N-meth 5.7 2E+02 0.0069 23.4 1.2 12 263-274 56-67 (121)
7 2l9s_A PHD finger protein 12; 4.6 4.8E+02 0.016 18.3 2.4 20 16-36 6-25 (45)
8 1z0p_A Hypothetical protein SP 4.6 2.1E+02 0.0073 22.4 0.6 7 48-54 67-73 (84)
9 2oa5_A Hypothetical protein BQ 4.1 2.1E+02 0.0071 23.5 0.2 14 25-38 50-63 (110)
10 2w0i_A Twinfilin-2; cytoskelet 4.0 4.9E+02 0.017 20.3 2.3 9 274-282 57-65 (135)
No 1
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=33.77 E-value=11 Score=29.83 Aligned_cols=18 Identities=33% Similarity=0.922 Sum_probs=13.7
Q ss_pred hHhHHHhhhhcceeEEEeee
Q psy3878 265 MKLINYFVSRYGVYSMTLYK 284 (299)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ 284 (299)
-.+|+|||.|||-|- ||+
T Consensus 60 ~eI~~~mv~RYGdfV--ly~ 77 (90)
T 2kw0_A 60 KEIVDYMVARYGNFV--TYD 77 (90)
T ss_dssp HHHHHHHHHHHTTTC--BCS
T ss_pred HHHHHHHHHhcCCeE--Eee
Confidence 357999999999763 444
No 2
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=33.09 E-value=11 Score=29.23 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=12.3
Q ss_pred hHhHHHhhhhcceeE
Q psy3878 265 MKLINYFVSRYGVYS 279 (299)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (299)
-.+|+|||.|||-|-
T Consensus 63 ~eI~~~~v~RYG~fV 77 (84)
T 2hl7_A 63 GEIVDYMVARYGDFV 77 (84)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCee
Confidence 357999999999763
No 3
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=12.00 E-value=73 Score=28.83 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=19.8
Q ss_pred CCCCCCCHH--HHHHHHHhcccCCCCCCCcccccCCCcCcCCC
Q psy3878 17 HPGLRGTPL--AMLAAQCNKLSNKSPPPLADAAVGKGFHPWKK 57 (299)
Q Consensus 17 ePrlgsTPL--AMLAAtCNKIgs~SPpplaDaa~gKGFHPWKk 57 (299)
+|+++-.|| .|+.+ .|+|-|+ |||||-|+.
T Consensus 242 ~~~~~~~~~l~~~v~~--G~lG~Kt---------g~Gfy~y~~ 273 (293)
T 1zej_A 242 DEKFKPPEWLQEKIKK--GEVGVKA---------GKGIYEYGP 273 (293)
T ss_dssp CGGGSCCHHHHHHHHT--TCCBGGG---------TBSSSBCCT
T ss_pred CCcCCCCHHHHHHHHC--CCCcccc---------CCEeeecCc
Confidence 346655554 45554 6777666 899999954
No 4
>2jwg_A VSG, variant surface glycoprotein iltat 1.24; membrane protein, immune system, VSG type 1 C-terminal domai; NMR {Trypanosoma}
Probab=5.86 E-value=1.8e+02 Score=20.37 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=7.3
Q ss_pred HHHHhcccCC
Q psy3878 29 AAQCNKLSNK 38 (299)
Q Consensus 29 AAtCNKIgs~ 38 (299)
-+.||||...
T Consensus 5 e~~Cnki~~~ 14 (46)
T 2jwg_A 5 EAECNKITEE 14 (46)
T ss_dssp HHHHHTTCCH
T ss_pred hhhhhccCCc
Confidence 4688888754
No 5
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=5.68 E-value=2.4e+02 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCCCCCCCHH--HHHHHHHhcccCCCCCCCcccccCCCcCcCCC
Q psy3878 16 EHPGLRGTPL--AMLAAQCNKLSNKSPPPLADAAVGKGFHPWKK 57 (299)
Q Consensus 16 EePrlgsTPL--AMLAAtCNKIgs~SPpplaDaa~gKGFHPWKk 57 (299)
+++|+.-.|| .|+++ .|+|-|+ |||||-|..
T Consensus 255 ~~~~~~~~~~~~~~v~~--g~lG~k~---------g~GfY~y~~ 287 (483)
T 3mog_A 255 QERRFLPSLVQQELVIG--GRLGKKS---------GLGVYDWRA 287 (483)
T ss_dssp SCGGGCCCHHHHHHHHT--TCCBGGG---------TBSSSBTTS
T ss_pred CCCccCchHHHHHHHHC--CCCceeC---------CCEeEECCC
Confidence 4556665565 23333 7788776 899999965
No 6
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5
Probab=5.67 E-value=2e+02 Score=23.42 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=9.7
Q ss_pred chhHhHHHhhhh
Q psy3878 263 LYMKLINYFVSR 274 (299)
Q Consensus 263 rR~~~~~~~~~~ 274 (299)
-|-|||||+.+.
T Consensus 56 ~~IKLINyIR~~ 67 (121)
T 1wir_A 56 GYIKLINFIRLK 67 (121)
T ss_dssp HHHHHHHHHHHT
T ss_pred EEEEEEEeeecc
Confidence 478999998765
No 7
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=4.57 E-value=4.8e+02 Score=18.29 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=15.2
Q ss_pred CCCCCCCCHHHHHHHHHhccc
Q psy3878 16 EHPGLRGTPLAMLAAQCNKLS 36 (299)
Q Consensus 16 EePrlgsTPLAMLAAtCNKIg 36 (299)
+|++| .+|+.+|.++-...-
T Consensus 6 ~~~~l-~sPf~~Li~aA~~~N 25 (45)
T 2l9s_A 6 VQPQL-RRPFELLIAAAMERN 25 (45)
T ss_dssp CCCCC-CCHHHHHHHHHHHSS
T ss_pred ccccc-CCHHHHHHHHHHHhC
Confidence 56788 699999988765544
No 8
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=4.56 E-value=2.1e+02 Score=22.37 Aligned_cols=7 Identities=57% Similarity=0.971 Sum_probs=5.1
Q ss_pred cCCCcCc
Q psy3878 48 VGKGFHP 54 (299)
Q Consensus 48 ~gKGFHP 54 (299)
.|||||-
T Consensus 67 ~GK~FHd 73 (84)
T 1z0p_A 67 NGKAFHD 73 (84)
T ss_dssp HTCCTTS
T ss_pred cCCCccc
Confidence 4788874
No 9
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=4.13 E-value=2.1e+02 Score=23.51 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=11.5
Q ss_pred HHHHHHHHhcccCC
Q psy3878 25 LAMLAAQCNKLSNK 38 (299)
Q Consensus 25 LAMLAAtCNKIgs~ 38 (299)
=||+++.||||.+.
T Consensus 50 ea~I~s~~~~Lss~ 63 (110)
T 2oa5_A 50 ESIIVSSSRALGAV 63 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999998753
No 10
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=4.00 E-value=4.9e+02 Score=20.31 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=6.6
Q ss_pred hcceeEEEe
Q psy3878 274 RYGVYSMTL 282 (299)
Q Consensus 274 ~~~~~~~~~ 282 (299)
||++|....
T Consensus 57 rY~~y~~~~ 65 (135)
T 2w0i_A 57 RYHFFLYKH 65 (135)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 788888754
Done!