Query psy3878
Match_columns 299
No_of_seqs 66 out of 68
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 19:42:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3878.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3878hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f0ya1 a.100.1.3 (A:204-302) 35.0 13 0.00094 26.1 3.0 34 14-56 66-99 (99)
2 d1wdka1 a.100.1.3 (A:497-620) 16.4 13 0.00095 27.7 -0.2 21 26-57 78-98 (124)
3 d2dloa1 g.39.1.3 (A:8-42) Thyr 14.1 14 0.0011 23.3 -0.4 9 46-54 24-32 (35)
4 d1omza_ c.68.1.15 (A:) Alpha-1 9.2 61 0.0044 22.9 1.6 28 263-291 230-261 (265)
5 d1k1aa_ d.211.1.1 (A:) bcl-3 { 7.5 75 0.0054 21.8 1.4 14 21-35 3-16 (228)
6 d1tfra1 a.60.7.1 (A:183-305) T 6.0 86 0.0063 23.6 1.1 11 264-274 101-111 (123)
7 d2fo1e1 d.211.1.1 (E:1021-1297 5.4 1.3E+02 0.0094 22.1 1.9 16 19-35 72-87 (277)
8 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 4.9 48 0.0035 22.4 -0.9 9 151-159 41-49 (59)
9 d1z0pa1 a.2.18.1 (A:1-77) Hypo 4.9 91 0.0066 22.3 0.6 6 48-53 67-72 (77)
10 d1pbya1 a.3.1.7 (A:1-85) Quino 4.5 1.3E+02 0.0096 21.0 1.2 15 263-277 55-69 (85)
No 1
>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.97 E-value=13 Score=26.08 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=23.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhcccCCCCCCCcccccCCCcCcCC
Q psy3878 14 STEHPGLRGTPLAMLAAQCNKLSNKSPPPLADAAVGKGFHPWK 56 (299)
Q Consensus 14 l~EePrlgsTPLAMLAAtCNKIgs~SPpplaDaa~gKGFHPWK 56 (299)
..|+|++.-.+|----+.=+|+|.|+ ||||+=||
T Consensus 66 ~~~~~~~~~~~~l~~mv~~g~lG~ks---------g~GfY~Y~ 99 (99)
T d1f0ya1 66 DAENPLHQPSPSLNKLVAENKFGKKT---------GEGFYKYK 99 (99)
T ss_dssp TTTCGGGCCCHHHHHHHHTTCCBTTT---------TBSSSBCC
T ss_pred cccccccCCCHHHHHHHHcCCCcccC---------CCcccccC
Confidence 45677777776543223338999887 99999876
No 2
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=16.42 E-value=13 Score=27.71 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=15.2
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCcCCC
Q psy3878 26 AMLAAQCNKLSNKSPPPLADAAVGKGFHPWKK 57 (299)
Q Consensus 26 AMLAAtCNKIgs~SPpplaDaa~gKGFHPWKk 57 (299)
.|+++ +|+|-|+ |||||=|+.
T Consensus 78 ~mv~~--g~lG~Kt---------g~GFY~y~~ 98 (124)
T d1wdka1 78 ALYEA--KRLGQKN---------GKGFYAYEA 98 (124)
T ss_dssp HHHHT--TCCBTTT---------TBSSSEEC-
T ss_pred HHHHc--CCccccC---------CcEeeEcCC
Confidence 45555 7888776 999999964
No 3
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.12 E-value=14 Score=23.30 Aligned_cols=9 Identities=56% Similarity=1.198 Sum_probs=7.9
Q ss_pred cccCCCcCc
Q psy3878 46 AAVGKGFHP 54 (299)
Q Consensus 46 aa~gKGFHP 54 (299)
-|.||.|||
T Consensus 24 rA~Gk~yHP 32 (35)
T d2dloa1 24 RAMGKAYHP 32 (35)
T ss_dssp EETTEEECT
T ss_pred HHhCCCCCC
Confidence 678999998
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.16 E-value=61 Score=22.88 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=17.9
Q ss_pred chhHhHHHhhhhcc----eeEEEeeeeeeeecC
Q psy3878 263 LYMKLINYFVSRYG----VYSMTLYKTSFVFPG 291 (299)
Q Consensus 263 rR~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 291 (299)
-|.+.||+|..-|| +|+ .+.-..|.||=
T Consensus 230 ~r~~~i~~f~~~f~~mPL~~s-~i~~~~f~fp~ 261 (265)
T d1omza_ 230 QRSYCINKLVNIYDGMPLKYS-NIMISQFGFPY 261 (265)
T ss_dssp HHHHHHHHHHHHHTSCCCCCB-CEEEEETTBST
T ss_pred HHHHHHHHHHHHHCcCcHHHH-HHHHHHhCCcc
Confidence 35677899988777 344 33445666763
No 5
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.54 E-value=75 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHhcc
Q psy3878 21 RGTPLAMLAAQCNKL 35 (299)
Q Consensus 21 gsTPLAMLAAtCNKI 35 (299)
|.|||= +|+..+.+
T Consensus 3 G~TpLh-~A~~~g~~ 16 (228)
T d1k1aa_ 3 GDTPLH-IAVVQGNL 16 (228)
T ss_dssp TCCHHH-HHHHTTCH
T ss_pred CccHHH-HHHHcCCH
Confidence 778884 66665543
No 6
>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=6.00 E-value=86 Score=23.63 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=9.1
Q ss_pred hhHhHHHhhhh
Q psy3878 264 YMKLINYFVSR 274 (299)
Q Consensus 264 R~~~~~~~~~~ 274 (299)
|+||+|||+..
T Consensus 101 r~~l~~YF~k~ 111 (123)
T d1tfra1 101 RGKIYSYFVKA 111 (123)
T ss_dssp TTHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 67999999953
No 7
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=5.45 E-value=1.3e+02 Score=22.14 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHhcc
Q psy3878 19 GLRGTPLAMLAAQCNKL 35 (299)
Q Consensus 19 rlgsTPLAMLAAtCNKI 35 (299)
..|.||| |+|+.++++
T Consensus 72 ~~G~TpL-h~A~~~g~~ 87 (277)
T d2fo1e1 72 CDENTPL-MLAVLARRR 87 (277)
T ss_dssp TTSCCHH-HHHHHHTCH
T ss_pred CCCCeee-ccccccccc
Confidence 6799999 688888764
No 8
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.95 E-value=48 Score=22.36 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=8.1
Q ss_pred cCCCCCCCC
Q psy3878 151 YSRHPYESW 159 (299)
Q Consensus 151 YpRHPYeSW 159 (299)
++||.++||
T Consensus 41 ~~~HtwQSw 49 (59)
T d1fexa_ 41 LTQHSWQSL 49 (59)
T ss_dssp SSSCCSHHH
T ss_pred CCCCCHHHH
Confidence 789999999
No 9
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.94 E-value=91 Score=22.30 Aligned_cols=6 Identities=67% Similarity=1.171 Sum_probs=4.5
Q ss_pred cCCCcC
Q psy3878 48 VGKGFH 53 (299)
Q Consensus 48 ~gKGFH 53 (299)
.|||||
T Consensus 67 ~gK~FH 72 (77)
T d1z0pa1 67 NGKAFH 72 (77)
T ss_dssp HTCCTT
T ss_pred cCCccc
Confidence 478887
No 10
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=4.52 E-value=1.3e+02 Score=20.99 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=13.1
Q ss_pred chhHhHHHhhhhcce
Q psy3878 263 LYMKLINYFVSRYGV 277 (299)
Q Consensus 263 rR~~~~~~~~~~~~~ 277 (299)
-+-.+++|++.+||+
T Consensus 55 e~~~Iv~YLa~~yG~ 69 (85)
T d1pbya1 55 ERAAIVRHLSDTRGL 69 (85)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 577899999999994
Done!