RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3878
         (299 letters)



>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
           reductase-thymidylate synthase, TS domain {Malaria
           parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 326

 Score = 27.7 bits (61), Expect = 1.8
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 13/86 (15%)

Query: 135 HQLLGKAVESHHLGSMYSRHPYESWPFNTMTSSSHHKPGDGMNTGWWDVPAGGWLDMSGG 194
             L   A+   H+   +       + F+   S   ++    +  G        +   S  
Sbjct: 198 KDLDQMALPPCHILCQF-------YVFDGKLSCIMYQRSCDLGLGVP------FNIASYS 244

Query: 195 MHAQMAANYAASSDYSLSHSIASNHL 220
           +   M A           H + + H+
Sbjct: 245 IFTHMIAQVCNLQPAQFIHVLGNAHV 270


>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.5 bits (58), Expect = 2.3
 Identities = 14/87 (16%), Positives = 29/87 (33%)

Query: 69  PAQLGSLSPTSQRNTNSSTPNNTSTSSNNNNNTSYTSRVITSSCAATPTYSTSGDIYFSG 128
             QL SL P  Q   + S       S ++  +  +      S C      S++   +F  
Sbjct: 2   QKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFI 61

Query: 129 SQNDNSHQLLGKAVESHHLGSMYSRHP 155
           ++       + + V   +      ++P
Sbjct: 62  NRRPCDPAKVCRLVNEVYHMYNRHQYP 88


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 27.6 bits (61), Expect = 2.6
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 75  LSPTSQRNTNSSTPNNTSTSSNNNNNTSYTSRVITSSCAATPTYSTSGDI--YFSGS 129
           LS    ++T ++     + S N + + ++TS V  ++      +   G +   FS S
Sbjct: 258 LSKNEDQSTQNTDSETRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNS 314


>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 25.5 bits (55), Expect = 5.7
 Identities = 8/79 (10%), Positives = 16/79 (20%)

Query: 53  HPWKKSPQSAGGNSTTPAQLGSLSPTSQRNTNSSTPNNTSTSSNNNNNTSYTSRVITSSC 112
                 P        T   +G  +   +             S   + +      VI+  C
Sbjct: 41  ENENCPPGVGACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVC 100

Query: 113 AATPTYSTSGDIYFSGSQN 131
                 +    +     Q 
Sbjct: 101 RPEAGPTNRPMLISLDKQT 119


>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 330

 Score = 25.3 bits (54), Expect = 8.8
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 4/146 (2%)

Query: 150 MYSRHPYESWPFNTMTSSSHHKPGDGMNTGWWDVPAGGWLDMSGGMHAQMAANYAASSDY 209
           +Y    Y+      M ++  +   + +      +      ++   M   +       +  
Sbjct: 146 IYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQ 205

Query: 210 SLSHSIASNHLLTSGQHLLNDTYKSMLPAQSSFSIPHPTPPTPAPTTPTPRTRLYMKLIN 269
           +   S +   L       L D  K+    + +F     +       +   +T+     IN
Sbjct: 206 NDESSRSHAIL----NIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANIN 261

Query: 270 YFVSRYGVYSMTLYKTSFVFPGRDSK 295
             +         +       P RDS+
Sbjct: 262 RSLLALKECIRAMDSDKNHIPFRDSE 287


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.124    0.382 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,491
Number of extensions: 44854
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 11
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)