BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3879
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 118/140 (84%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
LL+PY Y+ Q+PGKQ+RTKL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDDIEDNS
Sbjct: 13 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSK 72
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLLELH+GQG++IY
Sbjct: 73 LRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIY 132
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRDNYTCP+EEEY+ M ++K
Sbjct: 133 WRDNYTCPTEEEYKAMVLQK 152
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 75/91 (82%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIEDNS LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLL
Sbjct: 62 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 121
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRS 246
ELH+GQG++IYWRDNYTCP+EEEY+ M ++
Sbjct: 122 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQK 152
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 11/160 (6%)
Query: 5 SGDP---EQDEKLL-QPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHN 60
+ DP Q+E L+ +PY +I PGK R L N +N+P+++L + I+++LHN
Sbjct: 15 NNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHN 74
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA-----TA 115
SSLLIDDIEDN+ LRRG +H I+G+ STIN ANY+ A++ V L E
Sbjct: 75 SSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLIT 134
Query: 116 VYTEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTIRK 153
++ E+L+ LHRGQG++IYWRD P++E Y M + K
Sbjct: 135 IFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNK 174
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA-----TAVY 210
+ IDDIEDN+ LRRG +H I+G+ STIN ANY+ A++ V L E ++
Sbjct: 77 LLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIF 136
Query: 211 TEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTI 244
E+L+ LHRGQG++IYWRD P++E Y M +
Sbjct: 137 NEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVM 172
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRG 77
Y + V G +IR L L + EE LL + +++ H +SL+ DD+ DN+ RRG
Sbjct: 40 YSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRG 99
Query: 78 IPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 137
P H YG + A + + +A ++ +G+ ++E L G+ M++ +
Sbjct: 100 XPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERR 159
Query: 138 YTCPSEEEYRTM 149
S+E M
Sbjct: 160 XMEVSQEMVERM 171
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQG 222
DN+ RRG P H YG + A + + +A ++ +G+ ++E L G+
Sbjct: 92 DNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEA 151
Query: 223 MEIYWRDNYTCPSEEEYRTM 242
M++ + S+E M
Sbjct: 152 MDVEFERRXMEVSQEMVERM 171
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 25 PGKQIRTKLAYAFNNWLN--IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAH 82
P K +R+KL A N I +K L + I++M+ +SLL DD+ D + +RR +P +
Sbjct: 34 PSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSIN 93
Query: 83 SIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPS 142
+++G + + + + A ++ +G A A+ + +L L RG+ +++ + +
Sbjct: 94 ALFGNFNAVMLGDVFYSKAFFELSKMGELIAQAL-SNAVLRLSRGEIEDVFVGECFNSDK 152
Query: 143 EEEYRTM 149
++ +R +
Sbjct: 153 QKYWRIL 159
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + +RR +P ++++G + + + + A ++ +G A A+ + +L L
Sbjct: 77 DDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMGELIAQAL-SNAVLRLS 135
Query: 219 RGQGMEIYWRDNYTCPSEEEYRTM 242
RG+ +++ + + ++ +R +
Sbjct: 136 RGEIEDVFVGECFNSDKQKYWRIL 159
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 26 GKQIRTKLAYAFNNWLN-IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSI 84
GK++R + +LN ++ L+ ++++H +SL+ DD DNS +RRG H
Sbjct: 44 GKRVRPMFV-LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIA 102
Query: 85 YGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNY 138
+ + I ++++A AL+ + ++ + + ++++ +LE+ G+ ++ R NY
Sbjct: 103 FDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNY 156
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD DNS +RRG H + + I ++++A AL+ + ++ + + ++++ +LE+
Sbjct: 84 DDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC 143
Query: 219 RGQGMEIYWRDNY 231
G+ ++ R NY
Sbjct: 144 FGEFDQMADRFNY 156
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 18 YTYISQVPGKQIRTKLAYAFNNWLNI--PEE---------------KLLAIGDIIQMLHN 60
Y + V GKQ R+ + L++ PE + I +I +M+H
Sbjct: 42 YFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHV 101
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQ 120
+SLL DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+
Sbjct: 102 ASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATA 161
Query: 121 LLELHRGQGMEIYWRDNYTCPSEEEY 146
+ L G+ MEI T +E+ Y
Sbjct: 162 VEHLVTGETMEI------TSSTEQRY 181
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+ + L
Sbjct: 107 DDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV 166
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
G+ MEI T +E+ Y
Sbjct: 167 TGETMEI------TSSTEQRY 181
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 55 IQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV-QSLGHPEA 113
I+++HN SL+ DDI D RRG P H I+G+ I A + + + A E V ++ PE
Sbjct: 75 IELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEK 134
Query: 114 TAVYTEQLL----ELHRGQGMEIYWRDNYTCPSEE 144
A E ++ EL GQ ++ + T EE
Sbjct: 135 KARVLEVIVKASNELCEGQARDLEFEKKSTVTIEE 169
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV-QSLGHPEATAVYTEQLL-- 215
DDI D RRG P H I+G+ I A + + + A E V ++ PE A E ++
Sbjct: 86 DDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKA 145
Query: 216 --ELHRGQGMEIYWRDNYTCPSEE 237
EL GQ ++ + T EE
Sbjct: 146 SNELCEGQARDLEFEKKSTVTIEE 169
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 18 YTYISQVPGKQIRTKLAYAFNNWLNI--PEE---------------KLLAIGDIIQMLHN 60
Y + V GKQ R+ + L++ PE + I +I +M+H
Sbjct: 42 YFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHV 101
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQ 120
+SLL DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+
Sbjct: 102 ASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATA 161
Query: 121 LLELHRGQGMEI 132
+ L G+ MEI
Sbjct: 162 VEHLVTGETMEI 173
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+ + L
Sbjct: 107 DDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV 166
Query: 219 RGQGMEI 225
G+ MEI
Sbjct: 167 TGETMEI 173
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 2 LSKSGDPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLN---IPEEKLLAIGDIIQML 58
L+K G+ + L + + + PGK +R L F ++ I + ++L I+++L
Sbjct: 21 LNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELL 80
Query: 59 HNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG 109
H SLL DD+ D RRGI ++YG I A+++++A +++ +LG
Sbjct: 81 HVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG 202
DD+ D RRGI ++YG I A+++++A +++ +LG
Sbjct: 88 DDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY 85
GK++R + A + + ++ +H ++LL DD+ D S LRRG AH I+
Sbjct: 65 GKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIW 124
Query: 86 GIASTINAANYVVAIALE 103
G A ++ +++ A A E
Sbjct: 125 GGAQSVLVGDFLFARAFE 142
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALE 196
DD+ D S LRRG AH I+G A ++ +++ A A E
Sbjct: 105 DDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFE 142
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E + ++M+H SL+ DD+ DN LRRG P H
Sbjct: 43 GKRVRPMLCIAACELVGGDESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHM 102
Query: 84 IYGIASTINAANYVVAIALEKVQS 107
+G + + A + +++ A E V +
Sbjct: 103 AFGESVAVLAGDALLSFAFEHVAA 126
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 200
DN LRRG P H +G + + A + +++ A E V +
Sbjct: 89 DNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAA 126
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAY--AFNNWLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ A N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSAKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 113
DD+ D + RRG + +YG + + A + V+ A V+ +G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKA 128
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 206
DD+ D + RRG + +YG + + A + V+ A V+ +G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKA 128
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHS 83
GK++R L A + E ++ +H SL+ DD+ DN LRRG P H
Sbjct: 52 GKRVRPVLCIAACELVGGEESLAXPAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHK 111
Query: 84 IYGIASTINAANYVVAIALEKVQSLGHPEAT-AVYTEQLLELHRGQGME 131
+YG + A + +++ A E + S E + A + EL + G E
Sbjct: 112 VYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTE 160
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT-AVYTEQLLELHRGQ 221
DN LRRG P H +YG + A + +++ A E + S E + A + EL +
Sbjct: 98 DNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAI 157
Query: 222 GME 224
G E
Sbjct: 158 GTE 160
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK+IR L Y + +++ + L I +++ H SL+ DD+ DN LRRG P H
Sbjct: 50 GKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHK 109
Query: 84 IYGIASTINAANYVVAIALE 103
+ A+ I + + A+A+E
Sbjct: 110 AFDEATAILVGDGMQALAIE 129
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 113
DD+ D + RRG + +YG + + A + V+ A V+ G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 206
DD+ D + RRG + +YG + + A + V+ A V+ G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ +++ H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELYHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH 110
DD+ D + RRG + +YG + + A + V+ A V+ +G+
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGN 125
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH 203
DD+ D + RRG + +YG + + A + V+ A V+ +G+
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGN 125
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDI-IQMLHNSSLLIDDIEDNSILRRGIPVAHSI 84
GK +R Y F+ + N L G I++LH +L+ DD+ D+S RRG+
Sbjct: 55 GKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMT 114
Query: 85 YGIASTINAANYVVAIALEKV------QSLGHPEATAVYTEQLLELHRGQGMEIYWRDNY 138
YG + I A +++ + ++V +SL A++ ELH+ M++ +R++
Sbjct: 115 YGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQ---MDLNYREDI 171
Query: 139 T 139
T
Sbjct: 172 T 172
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV------QSLGHPEATAVYTE 212
DD+ D+S RRG+ YG + I A +++ + ++V +SL A++
Sbjct: 96 DDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRI 155
Query: 213 QLLELHRGQGMEIYWRDNYT 232
ELH+ M++ +R++ T
Sbjct: 156 LQGELHQ---MDLNYREDIT 172
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDI-IQMLHNSSLLIDDIEDNSILRRGIPVAHSI 84
GK +R Y F+ + N L G I++LH +L+ DD+ D+S RRG+
Sbjct: 48 GKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMT 107
Query: 85 YGIASTINAANYVVAIALEKV 105
YG + I A +++ + ++V
Sbjct: 108 YGQRNAIYAGDFMFTVYFDQV 128
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV 198
DD+ D+S RRG+ YG + I A +++ + ++V
Sbjct: 89 DDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQV 128
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIP-EEKLLAIGDIIQMLHNSSLLIDDIEDNS 72
L+ ++++ GK+ R A + + P E ++ ++++ H ++L DD+ D +
Sbjct: 62 LVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEA 121
Query: 73 ILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQ 128
+RRG+P A++ + + I A + ++A A + LG + A + E EL GQ
Sbjct: 122 SMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQ 176
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + +RRG+P A++ + + I A + ++A A + LG + A + E EL
Sbjct: 115 DDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELV 173
Query: 219 RGQ 221
GQ
Sbjct: 174 TGQ 176
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 7 DPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLID 66
+ +D L+ +YI + GK+ R L F L + I++LH++SL +D
Sbjct: 31 NSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALD 89
Query: 67 DIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 107
DI D RRG A +YG I NY++ AL +Q+
Sbjct: 90 DIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQT 130
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 200
+ +DDI D RRG A +YG I NY++ AL +Q+
Sbjct: 86 LALDDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQT 130
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLYSLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--I 65
P Q+ +++ Y + + GK++R L YA + + L A ++ +H SL+
Sbjct: 50 PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDD 109
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 114
D+ LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 110 LPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDANMPEVS 158
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 167 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 207
LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 118 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDANMPEVS 158
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--I 65
P Q+ +++ Y + + GK++R L YA + + L A ++ +H SL+
Sbjct: 26 PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDD 85
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 114
D+ LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 86 LPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVS 134
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 167 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 207
LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVS 134
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--I 65
P Q+ +++ Y + + GK++R L YA + + L A ++ +H SL+
Sbjct: 27 PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDD 86
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 114
D+ LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 87 LPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVS 135
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 167 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 207
LRRG+P H +G A+ I A + + +A + PE +
Sbjct: 95 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVS 135
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDN 71
E + Y + GK++R L A ++ L I++++HN SL+ DDI D
Sbjct: 31 EDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDR 90
Query: 72 SILRRGIPVAHSIYGIASTI 91
+RRG+P +G + I
Sbjct: 91 GDVRRGLPTVRKAFGDNAAI 110
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEAAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 113
DD+ D + RRG + +YG + + A + V+ A V+ G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA 206
DD+ D + RRG + +YG + + A + V+ A V+ G+ +A
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H + LL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLAFLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 7 DPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLID 66
D E ++ L Y V GK+IR L +K+L I+M+H SL+ D
Sbjct: 55 DREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHD 114
Query: 67 DIE--DNSILRRGIPVAHSIYGIASTINAANYVVAIALE 103
D+ DN LRRG P H ++G A + A + ++ A++
Sbjct: 115 DLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMK 153
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALE 196
DN LRRG P H ++G A + A + ++ A++
Sbjct: 120 DNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMK 153
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y G +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GAMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK + +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLAVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H +SLL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLASLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + R G + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + R G + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI---PEEKLLAIGDIIQMLHNSSLLID 66
QD +L TY GK++R L A L + PE + +++LH SL+ D
Sbjct: 32 QDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVM-ALELLHTYSLIHD 90
Query: 67 DIE--DNSILRRGIPVAHSIYGIASTINAANYVVAIALE 103
D+ DN LRRG P H +G A + ++ +A +
Sbjct: 91 DLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQ 129
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY 85
GK +R L P E L +++ N L+ DDIED S RRG P H ++
Sbjct: 39 GKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLH 98
Query: 86 GIASTINAANYVVA-----IALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTC 140
+ +NA + + A +A + L PE + E + GQ +++ W T
Sbjct: 99 PMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGT- 157
Query: 141 PSEEEYRTMTIRKFDMRIDD 160
FD+R +D
Sbjct: 158 -------------FDLRPED 164
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVA-----IALEKVQSLGHPEATAVYTEQ 213
DDIED S RRG P H ++ + +NA + + A +A + L PE + E
Sbjct: 79 DDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEV 138
Query: 214 LLELHRGQGMEIYW 227
+ GQ +++ W
Sbjct: 139 VRRTAYGQHLDLLW 152
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
++ + GK++R L A + + + ++ +H ++LL DD+ D S RRG P
Sbjct: 47 HLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDESRQRRGRP 106
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSLGH-------PEATAVYTE-QLLELHRGQGM- 130
A+ ++ S++ +Y+ A + + + G+ A+AV E ++L+L Q +
Sbjct: 107 TANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLA 166
Query: 131 ---EIYWR 135
+IY R
Sbjct: 167 TTEDIYLR 174
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH-------PEATAVYT 211
DD+ D S RRG P A+ ++ S++ +Y+ A + + + G+ A+AV
Sbjct: 93 DDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIA 152
Query: 212 E-QLLELHRGQGM----EIYWR 228
E ++L+L Q + +IY R
Sbjct: 153 EGEVLQLTAAQNLATTEDIYLR 174
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 25 PGKQIRTKLAYAFNN----WLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPV 80
GK IR K+ ++ + NI + + +G +++ + L+ DDI D+ RRG P
Sbjct: 70 KGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPC 129
Query: 81 AHSIYGIASTINAANYVVAIALEKVQSLGHP-------EATAVYTEQLLELHRGQGMEIY 133
+ ++G ++ IN ++ ++L + L + +Y E + GQ +++
Sbjct: 130 WYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLS 189
Query: 134 WRD 136
+ D
Sbjct: 190 YFD 192
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP-------EATAVYT 211
DDI D+ RRG P + ++G ++ IN ++ ++L + L + +Y
Sbjct: 115 DDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYN 174
Query: 212 EQLLELHRGQGMEIYWRD 229
E + GQ +++ + D
Sbjct: 175 ESIFFTVLGQHLDLSYFD 192
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLA-YAFNN-WLNIPEEKLLAIGDIIQMLHNSSLLI 65
PEQ K L Y GK +R +L+ +F N + I E+ + ++ ++++H LL
Sbjct: 29 PEQIMKDLPLY-------GKMLRVRLSILSFKNRGVEIGEDAISSLA-ALELVHLYFLLH 80
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 7 DPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLID 66
+ +D L+ +YI + GK+ R L F L + I++LH++SL +
Sbjct: 31 NSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALC 89
Query: 67 DIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 107
DI D RRG A +YG I NY++ AL +Q+
Sbjct: 90 DIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQT 130
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 160 DIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 200
DI D RRG A +YG I NY++ AL +Q+
Sbjct: 90 DIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQT 130
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%)
Query: 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE 69
+D L + ++ GK+IR + + + + L ++ H++SL+ DD+
Sbjct: 26 EDPGLKKXVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEXXHSASLIHDDLL 85
Query: 70 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG 109
D ++RR +P A +G + + +Y++A ++ + G
Sbjct: 86 DQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG 125
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG 202
DD+ D ++RR +P A +G + + +Y++A ++ + G
Sbjct: 82 DDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG 125
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 19 TYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGI 78
T+I + GK +R L L +++LH +SL+ DD+ D S RRG
Sbjct: 40 THIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDESTERRGQ 99
Query: 79 PVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNY 138
++I+ ++ A +Y++A +L + + E + + +L G+ +++ N+
Sbjct: 100 LSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNH 159
Query: 139 TCPSEEEYRTMTIRK 153
+ SEE Y + IRK
Sbjct: 160 SF-SEEVYFDV-IRK 172
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D S RRG ++I+ ++ A +Y++A +L + + E + + +L
Sbjct: 87 DDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLA 146
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
G+ +++ N++ SEE Y
Sbjct: 147 EGELLQLSNVSNHSF-SEEVY 166
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DN 71
L Y +Q GK++R LA I + + ++ LH SL+ DD+ DN
Sbjct: 31 LRDAMAYAAQ-GGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDN 89
Query: 72 SILRRGIPVAHSIYGIASTINAANYVVAIALE 103
LRRG+P H + A+ + A + + +A E
Sbjct: 90 DDLRRGLPTVHKKWDDATAVLAGDALQTLAFE 121
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALE 196
DN LRRG+P H + A+ + A + + +A E
Sbjct: 88 DNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFE 121
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 23/198 (11%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY 85
GK +R LA E + ++++HN SLL DD+ D RR ++
Sbjct: 54 GKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVH 113
Query: 86 GIASTINAANYVVAIALEKVQSLGHPE---ATAVYTEQLLELHRGQGMEIYW--RDNYT- 139
G A I + + A+A E + LG E AT T+ L GQ +I + RD +
Sbjct: 114 GPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSV 173
Query: 140 --CPSEEEYRTMTIRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEK 197
C E +T + I G + + A T+ Y + +A +
Sbjct: 174 EECLEMEGNKTGALLACASSI-----------GAVLGGADERTADTLEKYGYHLGLAFQA 222
Query: 198 VQSL----GHPEATAVYT 211
V L G P+AT T
Sbjct: 223 VDDLLGIWGDPDATGKQT 240
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK+IR L YA + A ++ +H SL+ DD+ DN LRRG P H
Sbjct: 45 GKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHI 104
Query: 84 IYGIASTINAANYVVAIALE 103
+ A+ I A + + A E
Sbjct: 105 QFDEATAILAGDALQTFAFE 124
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE- 69
D +L + Y GK+IR L + LN E + ++M+H SL+ DD+
Sbjct: 27 DTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPA 86
Query: 70 -DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 107
DN RRG H +YG + I A + ++ A E + S
Sbjct: 87 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISS 125
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--IDDIE 69
E+L Q Y GK++R L YA + + + L ++ +H SL+
Sbjct: 36 ERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAM 95
Query: 70 DNSILRRGIPVAHSIYGIASTINAANYVVAIAL 102
D+ LRRG P H Y A+ I A + + A+A
Sbjct: 96 DDDDLRRGKPTCHKAYDEATAILAGDGLQALAF 128
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
P Q L++ Y + GK+ R L Y L L ++ +H SL+ DD
Sbjct: 32 PFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDD 91
Query: 68 IE--DNSILRRGIPVAHSIYGIASTINAANYVVAIAL 102
+ D+ LRRG P H + A+ I + + +A
Sbjct: 92 LPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAF 128
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 49 LAIGDIIQMLHNSSLLIDDIEDNSILRRG 77
LA+G I++ +SL+ DDI D S+ RRG
Sbjct: 100 LAVGWCIELFQAASLVADDIMDQSLTRRG 128
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 49 LAIGDIIQMLHNSSLLIDDIEDNSILRRG 77
LA+G I++ +SL+ DDI D S+ RRG
Sbjct: 100 LAVGWCIELFQAASLVADDIMDQSLTRRG 128
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 26 GKQIRTKLAYAFNNWLNIPE--EKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVA 81
GK R +L + N PE + L + ++ +H SL+ DD+ DN+ RRGIP
Sbjct: 39 GKHFRAQLLLSVVQS-NKPELLNQALDVALALEFIHTYSLIHDDLPAXDNADFRRGIPTL 97
Query: 82 HSIYGIASTINAANYVVAIALEKVQSLGHPE----------ATAVYTEQLLELHRGQGME 131
H Y + I + A+ E L H T + L GQ ++
Sbjct: 98 HKSYDETTAILVGD---ALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGXVIGQAID 154
Query: 132 IYWRDNYTCPSEEEY 146
++ D +E E+
Sbjct: 155 CFFEDKRLSLNELEF 169
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 52 GDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89
G +I+ L L+ DDI D S++RRG P + G+ +
Sbjct: 83 GWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTT 120
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 52 GDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89
G +I+ L L+ DDI D S++RRG P + G+ +
Sbjct: 84 GWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTT 121
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 52 GDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89
G +I+ L L+ DDI D S++RRG P + G+ +
Sbjct: 84 GWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTT 121
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 5 SGDPEQDE-----KLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLH 59
SG+ DE LL+ + GK++R L L E L +G ++ LH
Sbjct: 59 SGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLH 118
Query: 60 NSSLL--IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEAT 114
SL+ D+ LRRG P H + A+ I A + ++ +A + + S +P A
Sbjct: 119 CYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAA 175
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 66 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 126 RGQGMEIYWRDNYTCPSEEEY 146
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D + RRG + +YG + + A + V+ A V+ +G+ + + + ++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMS 140
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
+ +E R Y ++EEY
Sbjct: 141 EAELIEQLSR--YKPITKEEY 159
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 52 GDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89
G I+ L L+ DDI D S+ RRG P + G+ +
Sbjct: 84 GWXIEFLQAHYLVEDDIXDGSVXRRGKPCWYRFPGVTT 121
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPV 80
G +I+ L L+ DDI DNS+ RRG P
Sbjct: 111 CGWMIEFLQAHYLVEDDIMDNSVTRRGKPC 140
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPV 80
G +I+ L L+ DDI DNS+ RRG P
Sbjct: 134 CGWMIEFLQAHYLVEDDIMDNSVTRRGKPC 163
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 49 LAIGDIIQMLHNSSLLIDDIEDNSILRRG 77
LA+G I++ L+ DDI D S+ RRG
Sbjct: 81 LAVGWCIELFQAFFLVADDIMDQSLTRRG 109
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--IDDIEDNSILRRGIPVAHS 83
GK++R LAYA L E+ ++++H SL+ D+ LRRG P H
Sbjct: 44 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 103
Query: 84 IYGIASTINAANYVVAIALEKV 105
+ A I A + + ++A +
Sbjct: 104 AFDEACAILAGDGLQSLAFSAL 125
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 10 QDEKLLQPYTYISQVPGKQIRTKLAY----AFNNWLNIPEEKLLAIGDIIQMLHNSSLL- 64
++E+L + Y GK++R L AF + + ++ A ++M+H SL+
Sbjct: 34 ENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAAS---LEMIHTYSLIH 90
Query: 65 -IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIAL 102
D+ LRRG P H ++G A+ I A + ++ A
Sbjct: 91 DDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF 129
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLL--IDDIEDNSILRRGIPVAHS 83
GK++R LAYA L E+ ++++H SL+ D+ LRRG P H
Sbjct: 51 GKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHK 110
Query: 84 IYGIASTINAANYVVAIALEKV 105
+ A I A + + ++A +
Sbjct: 111 AFDEAXAILAGDGLQSLAFSAL 132
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
+G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 84 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 133
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
+G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 85 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 134
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 46 EKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
++ +G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 104 QRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 158
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 46 EKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
++ +G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 105 QRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 159
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
+G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 111 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 160
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 46 EKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
++ +G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 108 QRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 162
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 46 EKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
++ +G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 104 QRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 158
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
+G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 91 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 140
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVA 99
+G +++L L+ DDI D+S+ RRG + G+ IN AN + A
Sbjct: 90 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 139
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 55 IQMLHNSSLLIDDIE--DNSILRRGIPVAHSIY 85
I+ LH SL+ DD+ DN+ LRR P H+ Y
Sbjct: 90 IECLHTYSLIHDDLPCMDNAALRRNHPTLHAKY 122
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 55 IQMLHNSSLLIDDIE--DNSILRRGIPVAHSIY 85
I+ LH SL+ DD+ DN+ LRR P H+ Y
Sbjct: 83 IECLHTYSLIHDDLPCMDNAALRRNHPTLHAKY 115
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 26 GKQIRTKLAYAFNNWLNI-----PEEKLLAIGDI---IQMLHNSSLLIDDIEDNSILRRG 77
GK+IR YA+ +L EKL ++ D ++ + +L+ DDI D+S RRG
Sbjct: 62 GKRIRP--LYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRG 119
Query: 78 IPVAH 82
P H
Sbjct: 120 APTVH 124
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 27.7 bits (60), Expect = 5.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 36 AFNNWLNIPEEKLLAIGDIIQMLHNS--SLLIDDIEDNSILRRGIPV 80
+F N ++P++KLLA Q H + LL+D+ D L+ G+P+
Sbjct: 415 SFENHCSVPQQKLLA-----QYCHEAFGELLLDNPIDGHPLKPGVPL 456
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,440,196
Number of Sequences: 62578
Number of extensions: 296486
Number of successful extensions: 922
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 151
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)