BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3879
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56966|GGPPS_BOVIN Geranylgeranyl pyrophosphate synthase OS=Bos taurus GN=GGPS1 PE=1
SV=2
Length = 300
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 118/140 (84%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
LL+PY Y+ Q+PGKQ+RTKL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDDIEDNS
Sbjct: 12 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSK 71
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLLELH+GQG++IY
Sbjct: 72 LRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLNHPDAVKLFTRQLLELHQGQGLDIY 131
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRDNYTCP+EEEY+ M ++K
Sbjct: 132 WRDNYTCPTEEEYKAMVLQK 151
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 75/91 (82%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIEDNS LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLL
Sbjct: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLNHPDAVKLFTRQLL 120
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRS 246
ELH+GQG++IYWRDNYTCP+EEEY+ M ++
Sbjct: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQK 151
>sp|O95749|GGPPS_HUMAN Geranylgeranyl pyrophosphate synthase OS=Homo sapiens GN=GGPS1 PE=1
SV=1
Length = 300
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 118/140 (84%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
LL+PY Y+ Q+PGKQ+RTKL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDDIEDNS
Sbjct: 12 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSK 71
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLLELH+GQG++IY
Sbjct: 72 LRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIY 131
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRDNYTCP+EEEY+ M ++K
Sbjct: 132 WRDNYTCPTEEEYKAMVLQK 151
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 75/91 (82%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIEDNS LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLL
Sbjct: 61 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRS 246
ELH+GQG++IYWRDNYTCP+EEEY+ M ++
Sbjct: 121 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQK 151
>sp|Q6F596|GGPPS_RAT Geranylgeranyl pyrophosphate synthase OS=Rattus norvegicus GN=Ggps1
PE=2 SV=1
Length = 300
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 117/140 (83%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
LL+PY Y+ Q+PGKQ+RTKL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDDIED+S
Sbjct: 12 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDSSK 71
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG PVAHSIYG+ S IN+ANYV + LEKV +L HP+A ++T QLLELH+GQG++IY
Sbjct: 72 LRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIY 131
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRD YTCP+EEEY+ M ++K
Sbjct: 132 WRDTYTCPTEEEYKAMVLQK 151
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIED+S LRRG PVAHSIYG+ S IN+ANYV + LEKV +L HP+A ++T QLL
Sbjct: 61 LLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRS 246
ELH+GQG++IYWRD YTCP+EEEY+ M ++
Sbjct: 121 ELHQGQGLDIYWRDTYTCPTEEEYKAMVLQK 151
>sp|Q9WTN0|GGPPS_MOUSE Geranylgeranyl pyrophosphate synthase OS=Mus musculus GN=Ggps1 PE=2
SV=1
Length = 300
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 117/140 (83%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
LL+PY Y+ Q+PGKQ+R+KL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDDIED+S
Sbjct: 12 LLEPYRYLLQLPGKQVRSKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDSSK 71
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG PVAHSIYG+ S IN+ANYV + LEKV +L HP+A ++T QLLELH+GQG++IY
Sbjct: 72 LRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIY 131
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRD YTCP+EEEY+ M ++K
Sbjct: 132 WRDTYTCPTEEEYKAMVLQK 151
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIED+S LRRG PVAHSIYG+ S IN+ANYV + LEKV +L HP+A ++T QLL
Sbjct: 61 LLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL 120
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRS 246
ELH+GQG++IYWRD YTCP+EEEY+ M ++
Sbjct: 121 ELHQGQGLDIYWRDTYTCPTEEEYKAMVLQK 151
>sp|P24322|GGPPS_NEUCR Geranylgeranyl pyrophosphate synthase OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=al-3 PE=2 SV=2
Length = 433
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 110/146 (75%), Gaps = 1/146 (0%)
Query: 9 EQDEKLLQ-PYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
E+ EK+L PY Y++ PGK IR+++ AF+ WL++P E L I +I MLH +SLL+DD
Sbjct: 128 EEKEKVLTGPYDYLNGHPGKDIRSQMVKAFDAWLDVPSESLEVITKVISMLHTASLLVDD 187
Query: 68 IEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRG 127
+EDNS+LRRG PVAHSI+GI TIN +NYV AL+++Q L +P+A ++++E+LL LHRG
Sbjct: 188 VEDNSVLRRGFPVAHSIFGIPQTINTSNYVYFYALQELQKLKNPKAVSIFSEELLNLHRG 247
Query: 128 QGMEIYWRDNYTCPSEEEYRTMTIRK 153
QGM+++WRD TCP+E++Y M K
Sbjct: 248 QGMDLFWRDTLTCPTEDDYLEMVSNK 273
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 70/85 (82%)
Query: 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLEL 217
+DD+EDNS+LRRG PVAHSI+GI TIN +NYV AL+++Q L +P+A ++++E+LL L
Sbjct: 185 VDDVEDNSVLRRGFPVAHSIFGIPQTINTSNYVYFYALQELQKLKNPKAVSIFSEELLNL 244
Query: 218 HRGQGMEIYWRDNYTCPSEEEYRTM 242
HRGQGM+++WRD TCP+E++Y M
Sbjct: 245 HRGQGMDLFWRDTLTCPTEDDYLEM 269
>sp|Q9P885|GGPPS_MUCCL Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f.
lusitanicus GN=carG PE=1 SV=1
Length = 303
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 104/140 (74%)
Query: 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSI 73
+L+PYTY+ PGK IR KL AF+ WL++P++ L I II MLHN+SL+IDD++D+S
Sbjct: 17 ILEPYTYLISQPGKDIRAKLISAFDLWLHVPKDVLCVINKIIGMLHNASLMIDDVQDDSD 76
Query: 74 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIY 133
LRRG+PVAH IYG+ TIN ANYV+ +AL++V L P V TE+L+ LHRGQG+E+Y
Sbjct: 77 LRRGVPVAHHIYGVPQTINTANYVIFLALQEVMKLNIPSMMQVCTEELINLHRGQGIELY 136
Query: 134 WRDNYTCPSEEEYRTMTIRK 153
WRD+ TCP+EEEY M K
Sbjct: 137 WRDSLTCPTEEEYIDMVNNK 156
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDD++D+S LRRG+PVAH IYG+ TIN ANYV+ +AL++V L P V TE+L+
Sbjct: 66 LMIDDVQDDSDLRRGVPVAHHIYGVPQTINTANYVIFLALQEVMKLNIPSMMQVCTEELI 125
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMT 243
LHRGQG+E+YWRD+ TCP+EEEY M
Sbjct: 126 NLHRGQGIELYWRDSLTCPTEEEYIDMV 153
>sp|Q54BK1|GGPPS_DICDI Geranylgeranyl pyrophosphate synthase OS=Dictyostelium discoideum
GN=ggps1 PE=3 SV=1
Length = 303
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 102/145 (70%)
Query: 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI 68
+ D KL++PYTYI + GK R L +F+ WL + +EK+ I +IQ LH +SLLIDDI
Sbjct: 14 KSDFKLIEPYTYICESSGKGFRNALIKSFDYWLKVGDEKVQDISKVIQGLHGASLLIDDI 73
Query: 69 EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQ 128
EDNS LRRG PVAHSIYGI TIN+AN+V + +++ LG P+AT ++ E+L+ LHRGQ
Sbjct: 74 EDNSKLRRGKPVAHSIYGIPQTINSANFVYFLIMDQCNKLGDPKATTIFIEELIRLHRGQ 133
Query: 129 GMEIYWRDNYTCPSEEEYRTMTIRK 153
G +I+WRD T PSE+EY M K
Sbjct: 134 GYDIFWRDTNTSPSEQEYMNMVNEK 158
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL 215
+ IDDIEDNS LRRG PVAHSIYGI TIN+AN+V + +++ LG P+AT ++ E+L+
Sbjct: 68 LLIDDIEDNSKLRRGKPVAHSIYGIPQTINSANFVYFLIMDQCNKLGDPKATTIFIEELI 127
Query: 216 ELHRGQGMEIYWRDNYTCPSEEEYRTMT 243
LHRGQG +I+WRD T PSE+EY M
Sbjct: 128 RLHRGQGYDIFWRDTNTSPSEQEYMNMV 155
>sp|B2DBE9|GGS4_PHOAM Geranylgeranyl pyrophosphate synthase D OS=Phomopsis amygdali
GN=GGS-D PE=1 SV=1
Length = 424
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 127/224 (56%), Gaps = 21/224 (9%)
Query: 3 SKSGDP-------------EQDEKL-LQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKL 48
S +GDP E++EK+ L PY Y++ GK+ RT + AFN W +P E L
Sbjct: 109 SAAGDPQRFAVADLNFSWAEEEEKVVLAPYDYVASNSGKEFRTLILNAFNAWFRVPPESL 168
Query: 49 LAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 108
I D+++MLH SSLLIDDI+DNS+LRRG PVAHSIYG+A TIN NYV +A +++ L
Sbjct: 169 TIICDVVRMLHTSSLLIDDIQDNSLLRRGRPVAHSIYGVAQTINTGNYVYFLAAKELNKL 228
Query: 109 GH-PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRK----FDMRIDDIED 163
+ A V+T ++L LHRGQG E+YWRD CP+E+EY M K F M + ++
Sbjct: 229 RNAASALEVFTAEMLNLHRGQGQELYWRDTLKCPTEDEYLKMVSNKTGGLFRMAVKLMQA 288
Query: 164 NSILRRGIPVAHSIYGIASTIN--AANYVVAIALEKVQSLGHPE 205
S PV + + + A +Y A+E S G E
Sbjct: 289 ESPAGPMAPVCDKLVQLLGLVYQIADDYKNLTAVEYTTSKGFCE 332
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH-PEATAVYTEQLLE 216
IDDI+DNS+LRRG PVAHSIYG+A TIN NYV +A +++ L + A V+T ++L
Sbjct: 185 IDDIQDNSLLRRGRPVAHSIYGVAQTINTGNYVYFLAAKELNKLRNAASALEVFTAEMLN 244
Query: 217 LHRGQGMEIYWRDNYTCPSEEEYRTM 242
LHRGQG E+YWRD CP+E+EY M
Sbjct: 245 LHRGQGQELYWRDTLKCPTEDEYLKM 270
>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi
GN=GGS PE=3 SV=1
Length = 418
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 101/145 (69%)
Query: 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI 68
E++ + PY Y+ PGK R +L AFN WL++P L I ++ MLH SSLLIDD+
Sbjct: 125 EKENVVRGPYDYVISHPGKDFRAQLIGAFNVWLDVPTSSLEVITRVVGMLHESSLLIDDV 184
Query: 69 EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQ 128
+D+S LRRG PVAH+I+G+A TIN+ NY+ +AL+++ L +PE +++++L+ LHRGQ
Sbjct: 185 QDSSELRRGFPVAHNIFGVAQTINSGNYIYFVALQELHKLNNPELITIFSDELVNLHRGQ 244
Query: 129 GMEIYWRDNYTCPSEEEYRTMTIRK 153
GM+++W D TCP+EE+Y M K
Sbjct: 245 GMDLFWCDTLTCPTEEDYLEMVGNK 269
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 67/85 (78%)
Query: 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLEL 217
IDD++D+S LRRG PVAH+I+G+A TIN+ NY+ +AL+++ L +PE +++++L+ L
Sbjct: 181 IDDVQDSSELRRGFPVAHNIFGVAQTINSGNYIYFVALQELHKLNNPELITIFSDELVNL 240
Query: 218 HRGQGMEIYWRDNYTCPSEEEYRTM 242
HRGQGM+++W D TCP+EE+Y M
Sbjct: 241 HRGQGMDLFWCDTLTCPTEEDYLEM 265
>sp|Q758K0|GGPPS_ASHGO Geranylgeranyl pyrophosphate synthase OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=BTS1 PE=3 SV=1
Length = 320
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 7/151 (4%)
Query: 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE 69
Q+E L QPY ++ PGK R L FN + + E ++ A+ ++++MLH +SLLIDDIE
Sbjct: 18 QEELLRQPYNHLVTQPGKNFRNTLIRVFNGFYGLSERQVAAVTELVEMLHVASLLIDDIE 77
Query: 70 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATA-------VYTEQLL 122
DNS RRG+ AH +YG TIN ANY+ +++ + L V+ E+++
Sbjct: 78 DNSAWRRGVAAAHVVYGSPMTINTANYMYFVSMSLLGQLAAQRPAGPLQDLLKVFNEEMM 137
Query: 123 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRK 153
LHRGQG++IYWRD +T PSE +Y M + K
Sbjct: 138 NLHRGQGLDIYWRDTFTVPSEHDYLRMVMHK 168
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATA-------VY 210
IDDIEDNS RRG+ AH +YG TIN ANY+ +++ + L V+
Sbjct: 73 IDDIEDNSAWRRGVAAAHVVYGSPMTINTANYMYFVSMSLLGQLAAQRPAGPLQDLLKVF 132
Query: 211 TEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTI 244
E+++ LHRGQG++IYWRD +T PSE +Y M +
Sbjct: 133 NEEMMNLHRGQGLDIYWRDTFTVPSEHDYLRMVM 166
>sp|Q12051|GGPPS_YEAST Geranylgeranyl pyrophosphate synthase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BTS1 PE=1 SV=1
Length = 335
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 11/160 (6%)
Query: 5 SGDP---EQDEKLL-QPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHN 60
+ DP Q+E L+ +PY +I PGK R L N +N+P+++L + I+++LHN
Sbjct: 10 NNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHN 69
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA-----TA 115
SSLLIDDIEDN+ LRRG +H I+G+ STIN ANY+ A++ V L E
Sbjct: 70 SSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLIT 129
Query: 116 VYTEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTIRK 153
++ E+L+ LHRGQG++IYWRD P++E Y M + K
Sbjct: 130 IFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNK 169
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEA-----TAVY 210
+ IDDIEDN+ LRRG +H I+G+ STIN ANY+ A++ V L E ++
Sbjct: 72 LLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIF 131
Query: 211 TEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTI 244
E+L+ LHRGQG++IYWRD P++E Y M +
Sbjct: 132 NEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVM 167
>sp|A2PZA5|FUSS_PHOAM Fusicoccadiene synthase OS=Phomopsis amygdali GN=PaFS PE=1 SV=1
Length = 719
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 84/137 (61%)
Query: 17 PYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRR 76
PY YI+ +P K +R + A N+WL +P+ K+ I D +++LHNSSLL+DD +DNS LRR
Sbjct: 425 PYDYIASMPSKGVRDQFIDALNDWLRVPDVKVGKIKDAVRVLHNSSLLLDDFQDNSPLRR 484
Query: 77 GIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRD 136
G P H+I+G A T+N A Y + A+ ++ E+ ++ L +GQ M+++W
Sbjct: 485 GKPSTHNIFGSAQTVNTATYSIIKAIGQIMEFSAGESVQEVMNSIMILFQGQAMDLFWTY 544
Query: 137 NYTCPSEEEYRTMTIRK 153
N PSEEEY M +K
Sbjct: 545 NGHVPSEEEYYRMIDQK 561
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLEL 217
+DD +DNS LRRG P H+I+G A T+N A Y + A+ ++ E+ ++ L
Sbjct: 473 LDDFQDNSPLRRGKPSTHNIFGSAQTVNTATYSIIKAIGQIMEFSAGESVQEVMNSIMIL 532
Query: 218 HRGQGMEIYWRDNYTCPSEEEYRTM 242
+GQ M+++W N PSEEEY M
Sbjct: 533 FQGQAMDLFWTYNGHVPSEEEYYRM 557
>sp|C9K2Q3|FUSS_ALTBR Fusicoccadiene synthase OS=Alternaria brassicicola GN=bsc8 PE=1
SV=1
Length = 697
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%)
Query: 1 MLSKSGDPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHN 60
+L+ S P + + P TY+ +P K R A N+WL++ E++ + I+MLHN
Sbjct: 390 LLNCSLPPLSHKVISAPLTYVDSLPSKGTRDMFLDALNHWLHVDEQRASQVKMAIRMLHN 449
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQ 120
+SL++DD++D S LRR P AH ++G+A T N+A ++V +++ ++ L + A E+
Sbjct: 450 ASLMLDDVQDGSRLRRSKPSAHRVFGVAQTTNSAAFLVNESIKLIRELAGDQGVAAVLEK 509
Query: 121 LLELHRGQGMEIYWRDNYTCPSEEEY 146
L L GQ +++ N + PS EY
Sbjct: 510 LTSLFVGQAQDLHSSRNLSPPSLTEY 535
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 149 MTIRKF---DMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPE 205
M IR + +DD++D S LRR P AH ++G+A T N+A ++V +++ ++ L +
Sbjct: 442 MAIRMLHNASLMLDDVQDGSRLRRSKPSAHRVFGVAQTTNSAAFLVNESIKLIRELAGDQ 501
Query: 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEY 239
A E+L L GQ +++ N + PS EY
Sbjct: 502 GVAAVLEKLTSLFVGQAQDLHSSRNLSPPSLTEY 535
>sp|B2DBE8|GGS1_PHOAM Geranylgeranyl pyrophosphate synthase A OS=Phomopsis amygdali
GN=GGS-A PE=1 SV=1
Length = 389
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%)
Query: 17 PYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRR 76
P+ Y S +P K +R KL N W+ + L ++ ++ +HN SL+ DD+EDNS LRR
Sbjct: 89 PFHYTSSLPSKGVRDKLIGGLNIWVGASPKALDSVTSVVVDVHNLSLMQDDVEDNSPLRR 148
Query: 77 GIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRD 136
P HSI+GI T+N++ + L + + +P + E+L L GQ +++ W
Sbjct: 149 SRPSTHSIFGIDQTVNSSTCGIVEVLRRSSEMQNPAFLKIVIEELRSLLIGQSLDLLWTH 208
Query: 137 NYTCPSEEEYRTM 149
+ PS EEY M
Sbjct: 209 QISTPSVEEYLQM 221
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+EDNS LRR P HSI+GI T+N++ + L + + +P + E+L L
Sbjct: 138 DDVEDNSPLRRSRPSTHSIFGIDQTVNSSTCGIVEVLRRSSEMQNPAFLKIVIEELRSLL 197
Query: 219 RGQGMEIYWRDNYTCPSEEEYRTM 242
GQ +++ W + PS EEY M
Sbjct: 198 IGQSLDLLWTHQISTPSVEEYLQM 221
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI 68
++D+KL ++ GK+IR L E++L ++++HN +L+ DDI
Sbjct: 30 DKDDKLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI 89
Query: 69 EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP----EATAVYTEQLLEL 124
DN RRG P H +YG I A + + A A E V + E + ++ +E+
Sbjct: 90 MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKACVEV 149
Query: 125 HRGQGMEIYWRDNYTCPSEEEYRTMTIRK 153
GQ M++ + + Y P+ EEY M +K
Sbjct: 150 CEGQAMDMEFENYY--PTMEEYLDMIRKK 176
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP----EATAVYTEQL 214
DDI DN RRG P H +YG I A + + A A E V + E + ++
Sbjct: 87 DDIMDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKAC 146
Query: 215 LELHRGQGMEIYWRDNYTCPSEEEYRTM 242
+E+ GQ M++ + + Y P+ EEY M
Sbjct: 147 VEVCEGQAMDMEFENYY--PTMEEYLDM 172
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDN 71
E LL+ ++ GK+IR LA + + + I+++H SL+ DDI D+
Sbjct: 29 ETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDIMDD 88
Query: 72 SILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH----PEATAVYTEQLLELHRG 127
+RRG P H ++G I A + + + A E V G EA AV + +++ G
Sbjct: 89 DEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKEALAVVVDSCVKICEG 148
Query: 128 QGMEIYWRDNYTCPSEEEYRTM 149
Q +++ + + +EEEY M
Sbjct: 149 QALDMGFEERLDV-TEEEYMEM 169
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH----PEA 206
I F + DDI D+ +RRG P H ++G I A + + + A E V G EA
Sbjct: 75 IHTFSLIHDDIMDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKEA 134
Query: 207 TAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTM 242
AV + +++ GQ +++ + + +EEEY M
Sbjct: 135 LAVVVDSCVKICEGQALDMGFEERLDV-TEEEYMEM 169
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDN 71
+ LL+ ++ GK+IR LA + E + I+++H SL+ DDI D+
Sbjct: 29 DTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDIMDD 88
Query: 72 SILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPE----ATAVYTEQLLELHRG 127
+RRG P H I+G I A + + + A E V G E A AV + +++ G
Sbjct: 89 DEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKDALAVVVDSCVKICEG 148
Query: 128 QGMEIYWRDNYTCPSEEEYRTM 149
Q +++ + + +E+EY M
Sbjct: 149 QALDMGFEERLDV-TEDEYMEM 169
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPE----A 206
I F + DDI D+ +RRG P H I+G I A + + + A E V G E A
Sbjct: 75 IHTFSLIHDDIMDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKDA 134
Query: 207 TAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTM 242
AV + +++ GQ +++ + + +E+EY M
Sbjct: 135 LAVVVDSCVKICEGQALDMGFEERLDV-TEDEYMEM 169
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 DPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLID 66
+PE + YT +S GK++R L A + E ++ I+MLH SSL++D
Sbjct: 73 EPELKIREAMRYTLLSD--GKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILD 130
Query: 67 DIE--DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 107
D+ DN LRRG P H ++G + I A+ ++A+A++K S
Sbjct: 131 DLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTS 173
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 158 IDDIE--DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS 200
+DD+ DN LRRG P H ++G + I A+ ++A+A++K S
Sbjct: 129 LDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTS 173
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
PE E+L++ Y GK+IR A + L E+ + +G I+++HN SL+ DD
Sbjct: 21 PEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDD 80
Query: 68 IE--DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 125
+ DN + RRG+P H +G A + A + ++ E + + E++LE++
Sbjct: 81 LPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQ--RENYKTLSCEEILEIN 138
Query: 126 R 126
+
Sbjct: 139 K 139
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
++ Q GK+IR + E++ + ++++H +SL+ DD+ D++ LRRG P
Sbjct: 38 HLLQAGGKRIRPVFVLLAARFGQYDLERMKHVAVALELIHMASLVHDDVIDDADLRRGRP 97
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNY 138
+ + + +Y+ A +LE++ LG+P A V + ++E+ RG+ +I +D Y
Sbjct: 98 TIKAKWSNRFAMYTGDYLFARSLERMAELGNPRAHQVLAKTIVEVCRGEIEQI--KDKY 154
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ LRRG P + + + +Y+ A +LE++ LG+P A V + ++E+
Sbjct: 84 DDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERMAELGNPRAHQVLAKTIVEVC 143
Query: 219 RGQGMEIYWRDNY 231
RG+ +I +D Y
Sbjct: 144 RGEIEQI--KDKY 154
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 13 KLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNS 72
KL + ++ GK++R + ++ E+ G I++LH +L+ DDI D
Sbjct: 29 KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDIMDQD 88
Query: 73 ILRRGIPVAHSIYGIASTINAANYVVAIALEKV-QSL-GHP-----EATAVYTEQLLELH 125
+RRG+P H YG+ I A + + A A + + Q+L G P +A ++T ++ +
Sbjct: 89 NIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKAFDIFTRSIIIIS 148
Query: 126 RGQGMEIYWRDNYTCPSEEEYRTMTIRK 153
GQ +++ + D E+EY M RK
Sbjct: 149 EGQAVDMEFEDRIDIK-EQEYLDMISRK 175
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 154 FDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV-QSL-GHP-----EA 206
F + DDI D +RRG+P H YG+ I A + + A A + + Q+L G P +A
Sbjct: 77 FTLVHDDIMDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKA 136
Query: 207 TAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIR 245
++T ++ + GQ +++ + D E+EY M R
Sbjct: 137 FDIFTRSIIIISEGQAVDMEFEDRIDIK-EQEYLDMISR 174
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 36 AFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAAN 95
+F+ +P + L + I +M+H +SLL DD+ D++ +RRG P ++ +G +I A N
Sbjct: 109 SFSTGQILPSQ--LRLAQITEMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGN 166
Query: 96 YVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYR 147
+++A A + L +P+ T + + +L RG+ +++ N PS E +
Sbjct: 167 FILARASTAMARLRNPQVTELLATVIADLVRGEFLQL---KNTMDPSSLEIK 215
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ +RRG P ++ +G +I A N+++A A + L +P+ T + + +L
Sbjct: 137 DDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLV 196
Query: 219 RGQGMEIYWRDNYTCPSEEEYR 240
RG+ +++ N PS E +
Sbjct: 197 RGEFLQL---KNTMDPSSLEIK 215
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY 85
GK++R + + ++ + E+ +++LHN +L+ DDI DN LRRG+P H +
Sbjct: 44 GKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKW 103
Query: 86 GIASTINAANYVVAIALEKVQSL-----GHP--EATAVYTEQLLELHRGQGMEIYWRDNY 138
G I A +Y+ A A E + G+ +A +++ + + GQ M++ + +N
Sbjct: 104 GEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSF-ENR 162
Query: 139 TCPSEEEYRTM 149
+EEEY M
Sbjct: 163 LDVTEEEYIQM 173
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL-----GHP- 204
+ F + DDI DN LRRG+P H +G I A +Y+ A A E + G+
Sbjct: 76 LHNFTLVHDDIMDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTF 135
Query: 205 -EATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTM 242
+A +++ + + GQ M++ + +N +EEEY M
Sbjct: 136 YKAFSIFITSIEIISEGQAMDMSF-ENRLDVTEEEYIQM 173
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
YI GK+IR +A + + I +I+ +H ++LL DD+ D S +RRG
Sbjct: 38 YIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKA 97
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEI 132
A++ +G A+++ +++ A + + SLG + V +E + + G+ +++
Sbjct: 98 TANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQL 150
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D S +RRG A++ +G A+++ +++ A + + SLG + V +E + +
Sbjct: 84 DDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIA 143
Query: 219 RGQGMEI 225
G+ +++
Sbjct: 144 EGEVLQL 150
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
YI GK+IR +A + + I +I+ +H ++LL DD+ D S +RRG
Sbjct: 38 YIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKA 97
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEI 132
A++ +G A+++ +++ A + + SLG + V +E + + G+ +++
Sbjct: 98 TANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQL 150
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D S +RRG A++ +G A+++ +++ A + + SLG + V +E + +
Sbjct: 84 DDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIA 143
Query: 219 RGQGMEI 225
G+ +++
Sbjct: 144 EGEVLQL 150
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 33 LAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTIN 92
L Y N L P+++ LA +I++M+H +SLL DD+ DNS RRG P + +G I
Sbjct: 182 LPYESNGIL--PKQRRLA--EIVEMIHTASLLHDDVIDNSATRRGSPTGNVAFGNKMAIL 237
Query: 93 AANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEI 132
A ++++ A + L + E + + + L G+ M++
Sbjct: 238 AGDFLLGRASVAIARLRNAEVIELLSTTIANLVEGEFMQL 277
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ DNS RRG P + +G I A ++++ A + L + E + + + L
Sbjct: 211 DDVIDNSATRRGSPTGNVAFGNKMAILAGDFLLGRASVAIARLRNAEVIELLSTTIANLV 270
Query: 219 RGQGMEI 225
G+ M++
Sbjct: 271 EGEFMQL 277
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + +E +A ++M+H SL+ DD+ DN LRRG P H
Sbjct: 117 GKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 176
Query: 84 IYGIASTINAANYVVAIALEKV 105
IYG + A + ++A A E +
Sbjct: 177 IYGEDVAVLAGDSLLAFAFEHI 198
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV 198
DN LRRG P H IYG + A + ++A A E +
Sbjct: 163 DNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHI 198
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 43 IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIAL 102
+P+++ LA +I++M+H +SLL DD+ D+S RRG P ++ + + A ++++ A
Sbjct: 172 LPKQRRLA--EIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNKMAVLAGDFLLGRAT 229
Query: 103 EKVQSLGHPEATAVYTEQLLELHRGQGMEI 132
+ L +PE + + + L G+ M++
Sbjct: 230 VSISRLHNPEVVELMSNSIANLVEGEFMQL 259
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D+S RRG P ++ + + A ++++ A + L +PE + + + L
Sbjct: 193 DDVIDHSDTRRGRPSGNAAFTNKMAVLAGDFLLGRATVSISRLHNPEVVELMSNSIANLV 252
Query: 219 RGQGMEI 225
G+ M++
Sbjct: 253 EGEFMQL 259
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 18 YTYISQVPGKQIRTKLAYAFNNWLNI--PEE---------------KLLAIGDIIQMLHN 60
Y + V GKQ R+ + LN+ PE + I +I +M+H
Sbjct: 116 YFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHV 175
Query: 61 SSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQ 120
+SLL DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+
Sbjct: 176 ASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATA 235
Query: 121 LLELHRGQGMEIYWRDNYTCPSEEEY 146
+ L G+ MEI T +E+ Y
Sbjct: 236 VEHLVTGETMEI------TSSTEQRY 255
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ RRG+ + + G ++ A +++++ A + +L + E A+ + L
Sbjct: 181 DDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV 240
Query: 219 RGQGMEIYWRDNYTCPSEEEY 239
G+ MEI T +E+ Y
Sbjct: 241 TGETMEI------TSSTEQRY 255
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI 68
+ + +L+ Y + GK+ R L A + P L +G I+M+H +L+ DD+
Sbjct: 57 DGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDL 116
Query: 69 E--DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP 111
D+ +LRRG+P H +G A+ I + + A A + SL P
Sbjct: 117 PAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAP 161
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L + E + ++M+H +SL++DD+ D+ LRRG P H
Sbjct: 79 GKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHK 138
Query: 84 IYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL----ELHRGQGME 131
++G ++I A+N + ++A++ Q+L + V +E++L E+ R G E
Sbjct: 139 VFGEKTSILASNALRSLAVK--QTLAS-TSLGVTSERVLRAVQEMARAVGTE 187
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 13 KLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--D 70
+L+ Y + GK+ R L A + P L +G I+M+H +L+ DD+ D
Sbjct: 61 ELMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMD 120
Query: 71 NSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP 111
+ +LRRG+P H +G A+ I + + A A + SL P
Sbjct: 121 DDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLDAP 161
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH 110
I +I +M+H +SLL DD+ D++ RRG+ + I G ++ A +++++ A + +LG+
Sbjct: 174 IAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALAALGN 233
Query: 111 PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTM 149
E ++ + L G+ M+I S E+ R+M
Sbjct: 234 TEVVSLMATAVEHLVTGETMQI-------STSREQRRSM 265
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ RRG+ + I G ++ A +++++ A + +LG+ E ++ + L
Sbjct: 189 DDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALAALGNTEVVSLMATAVEHLV 248
Query: 219 RGQGMEIYWRDNYTCPSEEEYRTM 242
G+ M+I S E+ R+M
Sbjct: 249 TGETMQI-------STSREQRRSM 265
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 26 GKQIRTKLAYAFNNWLN-IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSI 84
GK++R + +LN ++ L+ ++++H +SL+ DD DNS +RRG H
Sbjct: 44 GKRVRPMFV-LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIA 102
Query: 85 YGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNY 138
+ + I ++++A AL+ + ++ + + ++++ +LE+ G+ ++ R NY
Sbjct: 103 FDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNY 156
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD DNS +RRG H + + I ++++A AL+ + ++ + + ++++ +LE+
Sbjct: 84 DDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC 143
Query: 219 RGQGMEIYWRDNY 231
G+ ++ R NY
Sbjct: 144 FGEFDQMADRFNY 156
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
++ Q GK+IR + + K+ + ++M+H +SL+ DD+ D++ LRRG P
Sbjct: 66 HLLQAGGKRIRPVFVLLSGMFGDYDINKIKYVAVTLEMIHMASLVHDDVIDDAELRRGKP 125
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYT 139
+ + + +Y++A +LE + + P+A + ++ ++E+ G+ +I +D Y
Sbjct: 126 TIKAKWDNRIAMYTGDYMLAGSLEMMTRINEPKAHRILSQTIVEVCLGEIEQI--KDKYN 183
Query: 140 CPSEEEYRT 148
E+ RT
Sbjct: 184 M--EQNLRT 190
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ LRRG P + + + +Y++A +LE + + P+A + ++ ++E+
Sbjct: 112 DDVIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMMTRINEPKAHRILSQTIVEVC 171
Query: 219 RGQGMEIYWRDNYTCPSEEEYRT 241
G+ +I +D Y E+ RT
Sbjct: 172 LGEIEQI--KDKYNM--EQNLRT 190
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 20 YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIP 79
YI Q GK+IR +A L + ++ +H +SLL DD+ D S +RRG
Sbjct: 44 YIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDVVDESDMRRGRA 103
Query: 80 VAHSIYGIASTINAANYVVAIALEKVQSL 108
A++ +G A+++ +++ A + V L
Sbjct: 104 TANAEFGNAASVLVGDFIYTRAFQLVAQL 132
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 14 LLQPYT------YISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
LL+P T Y GK++R L A + E ++ ++M+H SSL+ DD
Sbjct: 87 LLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDD 146
Query: 68 IE--DNSILRRGIPVAHSIYG 86
+ DN+ LRRG P H +YG
Sbjct: 147 LPCMDNADLRRGKPTNHKVYG 167
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E ++ ++M+H SSL+ DD+ DN+ LRRG P H
Sbjct: 105 GKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHK 164
Query: 84 IYG 86
+YG
Sbjct: 165 VYG 167
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 13 KLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--D 70
K+ + Y GK++R L A + E + ++M+H SL+ DD+ D
Sbjct: 111 KIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMD 170
Query: 71 NSILRRGIPVAHSIYGIASTINAANYVVAIALE 103
N LRRG P H +YG I + ++++A E
Sbjct: 171 NDDLRRGKPTTHKVYGEGVAILSGGALLSLAFE 203
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 135 RDNYTCPSE---EEYRTMTIRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVV 191
++N P+ E TM++ K D+ D +D LRRG P H +YG I + ++
Sbjct: 142 QENAAMPAACAVEMIHTMSLIKDDLPCMDNDD---LRRGKPTTHKVYGEGVAILSGGALL 198
Query: 192 AIALE 196
++A E
Sbjct: 199 SLAFE 203
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVA 99
+ +I +++H +SL+ DDI D S +RRGIP HS +G I A +++ A
Sbjct: 73 LAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAGDFLFA 121
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVA 192
DDI D S +RRGIP HS +G I A +++ A
Sbjct: 88 DDILDESDVRRGIPTVHSDFGTKIAILAGDFLFA 121
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 51 IGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIA 101
+G+II+M+H +SL+ DD+ D S +RRG H ++G + A +++ A A
Sbjct: 167 LGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGDFMFAQA 217
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI 68
E KL + Y + GK+IR L + L L + I+M+H SL+ DD+
Sbjct: 29 EGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDL 88
Query: 69 E--DNSILRRGIPVAHSIYGIASTINAANYVVAIALE 103
DN LRRG P H ++G A I A + ++ A +
Sbjct: 89 PSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQ 125
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A E + ++M+H SL+ DD+ DN LRRG P H
Sbjct: 105 GKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHK 164
Query: 84 IYGIASTINAANYVVAIALEKVQS 107
++G + A + ++A A E + +
Sbjct: 165 VFGEDVAVLAGDALLAFAFEHIAT 188
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E + ++M+H SL+ DD+ DN LRRG P H
Sbjct: 120 GKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHK 179
Query: 84 IYGIASTINAANYVVAIALE 103
++G + I + ++A+A E
Sbjct: 180 VFGESVAILSGGALLALAFE 199
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 144 EEYRTMTIRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALE 196
E TM++ K D+ DN LRRG P H ++G + I + ++A+A E
Sbjct: 150 EMIHTMSLIKDDL---PCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFE 199
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E ++ ++M+H SSL+ DD+ DN+ LRRG P H
Sbjct: 106 GKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHK 165
Query: 84 IYG 86
++G
Sbjct: 166 VFG 168
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 51/88 (57%)
Query: 50 AIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG 109
AI I +M+H +SL+ DD+ D++ RRG + I+G + A + +++ A + +G
Sbjct: 164 AIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIG 223
Query: 110 HPEATAVYTEQLLELHRGQGMEIYWRDN 137
+ ++ T+ + +L RG+ +++ ++N
Sbjct: 224 NTTVISILTQVIEDLVRGEFLQLGSKEN 251
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 40/72 (55%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DD+ D++ RRG + I+G + A + +++ A + +G+ ++ T+ + +L
Sbjct: 180 DDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLV 239
Query: 219 RGQGMEIYWRDN 230
RG+ +++ ++N
Sbjct: 240 RGEFLQLGSKEN 251
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 24 VPGKQIRTKLAY--AFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIP 79
PGK+IR L A + + + LL + ++M+H +SL++DD+ D++ LRRG P
Sbjct: 50 APGKRIRPMLLLLTARDLGCAVSHDGLLDLACAVEMVHAASLILDDMPCMDDAKLRRGRP 109
Query: 80 VAHSIYGIASTINAANYVVAIAL 102
HS YG I AA +++ A
Sbjct: 110 TIHSHYGEHVAILAAVALLSKAF 132
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E + ++M+H SL+ DD+ DN LRRG P H
Sbjct: 115 GKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 174
Query: 84 IYGIASTINAANYVVAIALEKVQS 107
++G + A + +++ A E + S
Sbjct: 175 VFGEDVAVLAGDALLSFAFEHLAS 198
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE--DNSILRRGIPVAHS 83
GK++R L A + E + ++M+H SL+ DD+ DN LRRG P H
Sbjct: 111 GKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 170
Query: 84 IYGIASTINAANYVVAIALEKVQSLGHPEAT-AVYTEQLLELHRGQGME 131
+YG + A + +++ A E + S E + A + EL + G E
Sbjct: 171 VYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTE 219
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 19 TYISQVPGKQIRTKLAYAFNNWLN-IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRG 77
+Y ++ GK+IR + + L+ L + +I++M+H +SL+ DD+ D + RR
Sbjct: 175 SYYFELKGKRIRPTIVLLLSKALSSTVHGSQLKLAEIVEMIHTASLVHDDVIDEASTRRD 234
Query: 78 -IPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGME----- 131
I + HS Y I +Y++A A + ++ +P+ T + L EL G+ M+
Sbjct: 235 VISINHS-YTNKLAILCGDYLLARASVVLSTIRNPDVTECMSTALAELVEGEFMQAKSNG 293
Query: 132 IYWRDNY 138
+ DNY
Sbjct: 294 VVSFDNY 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,685,543
Number of Sequences: 539616
Number of extensions: 3723804
Number of successful extensions: 10198
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 10013
Number of HSP's gapped (non-prelim): 213
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)