Query psy3879
Match_columns 247
No_of_seqs 237 out of 1801
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:43:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 100.0 1.3E-43 4.4E-48 312.0 18.5 191 11-203 29-279 (304)
2 3ipi_A Geranyltranstransferase 100.0 1.1E-43 3.7E-48 311.3 17.5 181 12-200 28-208 (295)
3 3mzv_A Decaprenyl diphosphate 100.0 1.8E-43 6.2E-48 315.8 19.3 185 11-201 38-222 (341)
4 3rmg_A Octaprenyl-diphosphate 100.0 9.4E-44 3.2E-48 317.0 17.4 187 9-201 30-216 (334)
5 3m0g_A Farnesyl diphosphate sy 100.0 9.4E-44 3.2E-48 311.9 16.8 193 10-203 26-272 (297)
6 3oyr_A Trans-isoprenyl diphosp 100.0 1.5E-43 5.2E-48 316.4 18.4 186 10-201 49-234 (345)
7 3p8l_A Geranyltranstransferase 100.0 2.8E-43 9.4E-48 309.4 19.0 190 10-201 34-280 (302)
8 3pde_A Farnesyl-diphosphate sy 100.0 9E-44 3.1E-48 313.1 15.9 189 10-200 32-278 (309)
9 3ts7_A Geranyltranstransferase 100.0 3E-43 1E-47 311.6 19.0 192 10-203 34-285 (324)
10 1rtr_A Geranyltranstransferase 100.0 1.6E-43 5.4E-48 311.4 17.2 191 10-202 26-273 (301)
11 2ftz_A Geranyltranstransferase 100.0 9.4E-43 3.2E-47 303.8 21.9 183 10-200 30-214 (284)
12 3uca_A Geranyltranstransferase 100.0 3.1E-43 1E-47 311.5 18.3 194 9-203 57-307 (324)
13 1wy0_A Geranylgeranyl pyrophos 100.0 2E-43 7E-48 316.3 17.2 185 11-201 31-220 (342)
14 3aqb_B Component B of hexapren 100.0 2.3E-43 8E-48 313.8 17.4 186 10-201 28-213 (325)
15 4f62_A Geranyltranstransferase 100.0 7.1E-43 2.4E-47 308.3 20.3 191 11-203 30-278 (317)
16 2q80_A Geranylgeranyl pyrophos 100.0 1.3E-43 4.6E-48 312.0 15.5 185 8-201 7-191 (301)
17 3p8r_A Geranyltranstransferase 100.0 5.9E-43 2E-47 307.6 19.1 192 10-203 34-285 (302)
18 3kra_B Geranyl diphosphate syn 100.0 7E-43 2.4E-47 303.5 19.1 186 9-201 23-221 (274)
19 3nf2_A Putative polyprenyl syn 100.0 4.8E-43 1.7E-47 314.1 18.1 187 9-201 26-226 (352)
20 1v4e_A Octoprenyl-diphosphate 100.0 3.3E-43 1.1E-47 309.1 16.5 176 16-201 30-206 (299)
21 2h8o_A Geranyltranstransferase 100.0 7.2E-43 2.5E-47 310.8 18.8 191 10-202 69-317 (335)
22 1rqj_A Geranyltranstransferase 100.0 1.4E-42 4.9E-47 305.3 18.7 184 10-200 28-224 (299)
23 4dhd_A Polyprenyl synthetase; 100.0 8.3E-43 2.9E-47 313.4 17.2 186 11-201 30-227 (358)
24 2e8v_A Geranylgeranyl pyrophos 100.0 7.2E-43 2.5E-47 312.2 16.7 187 9-201 23-216 (340)
25 1wmw_A Geranylgeranyl diphosph 100.0 1E-42 3.6E-47 310.2 17.4 185 10-201 23-214 (330)
26 3lmd_A Geranylgeranyl pyrophos 100.0 9.6E-43 3.3E-47 312.5 16.7 184 10-201 58-242 (360)
27 3pko_A Geranylgeranyl pyrophos 100.0 1.8E-42 6.1E-47 308.8 17.1 186 9-201 38-226 (334)
28 3npk_A Geranyltranstransferase 100.0 1.2E-42 4.2E-47 303.9 15.7 187 8-201 21-217 (291)
29 3llw_A Geranyltranstransferase 100.0 1.6E-42 5.5E-47 305.7 16.2 186 9-201 31-232 (311)
30 3lom_A Geranyltranstransferase 100.0 3.7E-42 1.3E-46 303.6 17.8 185 10-201 34-232 (313)
31 2azj_A Geranylgeranyl pyrophos 100.0 1E-41 3.6E-46 298.0 15.3 175 11-201 35-210 (289)
32 3apz_A Geranyl diphosphate syn 100.0 9E-42 3.1E-46 306.3 13.8 187 9-201 31-236 (348)
33 3qkc_B Geranyl diphosphate syn 100.0 4.3E-41 1.5E-45 292.2 16.8 185 9-203 28-224 (273)
34 2j1p_A Geranylgeranyl pyrophos 100.0 1.4E-41 4.8E-46 298.1 13.2 187 10-201 36-235 (293)
35 4fp4_A Polyprenyl synthetase; 100.0 3.6E-41 1.2E-45 292.8 15.2 175 10-201 29-206 (285)
36 3lk5_A Geranylgeranyl pyrophos 100.0 7.4E-41 2.5E-45 302.6 17.6 183 13-201 49-259 (380)
37 3tc1_A Octaprenyl pyrophosphat 100.0 7.7E-41 2.6E-45 295.8 14.7 173 19-201 28-202 (315)
38 2q58_A Fragment, farnesyl pyro 100.0 3.1E-41 1.1E-45 304.5 11.9 189 7-201 53-256 (368)
39 2qis_A Farnesyl pyrophosphate 100.0 5E-40 1.7E-44 297.0 17.5 186 10-201 62-266 (374)
40 1uby_A FPS, farnesyl diphospha 100.0 1.3E-39 4.5E-44 293.6 16.8 186 10-201 55-259 (367)
41 1yhl_A Farnesyl pyrophosphate 100.0 1.3E-39 4.5E-44 293.6 16.4 186 10-201 32-252 (362)
42 2her_A Fragment, farnesyl pyro 100.0 4.7E-40 1.6E-44 295.5 11.2 184 12-201 58-256 (368)
43 2ihi_A Pyrophosphate synthase; 100.0 5E-39 1.7E-43 291.8 17.2 184 12-201 66-288 (395)
44 3mav_A Farnesyl pyrophosphate 100.0 5.1E-39 1.7E-43 292.7 15.5 184 14-201 68-288 (395)
45 3dyh_A Farnesyl pyrophosphate 100.0 2.3E-38 7.8E-43 287.3 17.1 187 9-201 53-280 (390)
46 2q80_A Geranylgeranyl pyrophos 99.7 4.5E-18 1.5E-22 149.4 6.7 97 151-247 57-153 (301)
47 2e8v_A Geranylgeranyl pyrophos 99.7 8E-18 2.7E-22 150.2 7.3 97 151-247 72-175 (340)
48 1v4e_A Octoprenyl-diphosphate 99.7 8.2E-18 2.8E-22 147.5 7.1 95 151-247 73-167 (299)
49 3mzv_A Decaprenyl diphosphate 99.7 2.2E-17 7.4E-22 147.3 9.6 96 151-247 85-180 (341)
50 3oyr_A Trans-isoprenyl diphosp 99.7 2E-17 7E-22 147.5 9.1 96 151-247 97-192 (345)
51 1wy0_A Geranylgeranyl pyrophos 99.7 1.3E-17 4.4E-22 149.0 7.4 96 151-247 78-178 (342)
52 3rmg_A Octaprenyl-diphosphate 99.7 2.2E-17 7.5E-22 146.9 8.2 96 151-247 79-174 (334)
53 3aqb_B Component B of hexapren 99.7 1.9E-17 6.3E-22 147.0 7.5 96 151-247 76-171 (325)
54 3tc1_A Octaprenyl pyrophosphat 99.7 1.9E-17 6.4E-22 146.1 7.3 95 151-247 69-163 (315)
55 3nf2_A Putative polyprenyl syn 99.7 2.3E-17 8E-22 147.6 8.0 96 151-247 86-184 (352)
56 2ftz_A Geranyltranstransferase 99.7 3.5E-17 1.2E-21 142.4 8.7 97 151-247 78-176 (284)
57 1wmw_A Geranylgeranyl diphosph 99.7 1.8E-17 6.2E-22 147.3 5.8 97 151-247 71-173 (330)
58 3apz_A Geranyl diphosphate syn 99.7 3.5E-17 1.2E-21 146.5 6.3 96 151-247 99-194 (348)
59 3pko_A Geranylgeranyl pyrophos 99.7 6.2E-17 2.1E-21 144.0 7.7 96 151-247 88-184 (334)
60 3lmd_A Geranylgeranyl pyrophos 99.7 5.2E-17 1.8E-21 145.5 6.8 94 151-247 107-200 (360)
61 4dhd_A Polyprenyl synthetase; 99.7 1.1E-16 3.7E-21 143.6 8.6 97 151-247 77-185 (358)
62 3ipi_A Geranyltranstransferase 99.7 8.4E-17 2.9E-21 140.7 6.1 94 151-247 74-167 (295)
63 1rtr_A Geranyltranstransferase 99.6 2.3E-16 7.9E-21 138.4 6.5 95 151-247 74-178 (301)
64 3m0g_A Farnesyl diphosphate sy 99.6 2.9E-16 9.8E-21 137.4 6.7 97 151-247 73-179 (297)
65 2q58_A Fragment, farnesyl pyro 99.6 2.8E-16 9.7E-21 141.5 6.3 135 112-247 55-211 (368)
66 3pde_A Farnesyl-diphosphate sy 99.6 5E-16 1.7E-20 136.4 7.4 95 151-247 82-185 (309)
67 2h8o_A Geranyltranstransferase 99.6 3.1E-16 1.1E-20 139.3 5.9 95 151-247 117-222 (335)
68 3p8l_A Geranyltranstransferase 99.6 6.6E-16 2.3E-20 135.4 7.6 95 151-247 83-186 (302)
69 1rqj_A Geranyltranstransferase 99.6 5.4E-16 1.8E-20 136.0 6.5 95 151-247 76-182 (299)
70 3ts7_A Geranyltranstransferase 99.6 8.5E-16 2.9E-20 135.8 7.2 95 151-247 82-188 (324)
71 1yhl_A Farnesyl pyrophosphate 99.6 5.9E-16 2E-20 139.2 6.1 97 151-247 90-208 (362)
72 3npk_A Geranyltranstransferase 99.6 9.7E-16 3.3E-20 133.7 7.3 95 151-247 72-175 (291)
73 3lk5_A Geranylgeranyl pyrophos 99.6 1.2E-15 4.1E-20 137.7 7.6 96 151-247 100-216 (380)
74 3kra_B Geranyl diphosphate syn 99.6 1.5E-15 5E-20 131.6 7.7 95 151-247 72-179 (274)
75 3lsn_A Geranyltranstransferase 99.6 1.5E-15 5.2E-20 133.2 7.2 95 151-247 76-182 (304)
76 2azj_A Geranylgeranyl pyrophos 99.6 1.1E-15 3.7E-20 133.3 5.9 88 151-247 81-169 (289)
77 3lom_A Geranyltranstransferase 99.6 1.4E-15 4.6E-20 134.0 6.5 96 151-247 82-189 (313)
78 3llw_A Geranyltranstransferase 99.6 1.5E-15 5.3E-20 133.5 6.8 95 151-247 86-189 (311)
79 3p8r_A Geranyltranstransferase 99.6 1.4E-15 4.9E-20 133.3 6.4 95 151-247 82-188 (302)
80 4f62_A Geranyltranstransferase 99.6 3.6E-15 1.2E-19 131.4 8.7 95 151-247 77-181 (317)
81 3uca_A Geranyltranstransferase 99.6 1.5E-15 5.2E-20 134.2 6.0 96 151-247 106-211 (324)
82 2qis_A Farnesyl pyrophosphate 99.5 2.6E-15 8.8E-20 135.4 5.0 97 151-247 116-222 (374)
83 2her_A Fragment, farnesyl pyro 99.5 2.6E-15 8.9E-20 134.7 4.7 96 151-247 107-211 (368)
84 1uby_A FPS, farnesyl diphospha 99.5 3.8E-15 1.3E-19 134.1 5.2 97 151-247 109-215 (367)
85 3mav_A Farnesyl pyrophosphate 99.5 3.7E-15 1.3E-19 135.4 4.6 97 151-247 117-243 (395)
86 2j1p_A Geranylgeranyl pyrophos 99.5 6.9E-15 2.4E-19 128.6 4.9 97 151-247 84-193 (293)
87 4fp4_A Polyprenyl synthetase; 99.5 1.3E-14 4.5E-19 125.8 5.9 86 151-247 80-165 (285)
88 2ihi_A Pyrophosphate synthase; 99.5 2.9E-14 9.9E-19 129.2 5.0 97 151-247 117-243 (395)
89 3dyh_A Farnesyl pyrophosphate 99.4 5.1E-14 1.7E-18 127.5 5.7 97 151-247 118-236 (390)
90 3qkc_B Geranyl diphosphate syn 99.4 1.5E-13 5.2E-18 118.9 6.1 92 151-247 77-180 (273)
91 1ps1_A Pentalenene synthase; a 83.7 12 0.0004 32.0 11.2 54 103-156 125-179 (337)
92 3kb9_A EPI-isozizaene synthase 82.3 1.8 6E-05 38.4 5.4 47 110-156 175-221 (382)
93 1yyq_A Trichodiene synthase; t 72.0 21 0.00072 31.5 9.3 126 22-157 56-188 (374)
94 3v1v_A 2-MIB synthase, 2-methy 70.1 61 0.0021 29.0 12.3 52 101-152 244-295 (433)
95 3aqb_A Component A of hexapren 68.3 6.5 0.00022 29.7 4.3 43 90-132 72-114 (147)
96 3g4d_A (+)-delta-cadinene synt 59.4 25 0.00087 32.7 7.6 41 204-244 365-405 (554)
97 3m00_A Aristolochene synthase; 54.5 23 0.0008 32.9 6.4 41 204-244 361-401 (550)
98 3kb9_A EPI-isozizaene synthase 53.4 24 0.00082 30.9 6.1 42 203-244 175-216 (382)
99 2j5c_A 1,8-cineole synthase; t 50.6 27 0.00093 32.6 6.3 38 206-243 383-420 (569)
100 3v1v_A 2-MIB synthase, 2-methy 48.9 24 0.00083 31.7 5.5 43 202-244 252-294 (433)
101 1ps1_A Pentalenene synthase; a 48.9 41 0.0014 28.5 6.8 42 203-244 132-174 (337)
102 3p5p_A Taxadiene synthase; cla 45.5 54 0.0019 31.7 7.6 38 206-243 567-604 (764)
103 3sdr_A Alpha-bisabolene syntha 40.5 74 0.0025 31.0 7.8 38 206-243 626-663 (817)
104 2ong_A 4S-limonene synthase; m 38.0 1.5E+02 0.0051 27.3 9.2 88 113-200 356-489 (543)
105 2ong_A 4S-limonene synthase; m 36.8 72 0.0025 29.5 6.8 38 206-243 356-393 (543)
106 3s9v_A Abietadiene synthase, c 35.5 1.2E+02 0.004 29.5 8.2 38 206-243 598-635 (785)
107 1v54_K IHQ, cytochrome C oxida 29.3 35 0.0012 21.3 2.2 25 75-101 3-27 (56)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.3e-43 Score=311.98 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=165.7
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcchh
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~~ 88 (247)
++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||++
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~ 108 (304)
T 3lsn_A 29 LARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEA 108 (304)
T ss_dssp GHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHH
Confidence 6899999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----Ch----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh
Q psy3879 89 STINAANYVVAIALEKVQSLG----HP----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI 158 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~----~~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~ 158 (247)
.|||+||+|++.+|+.+++.+ .+ ++++.+++++ .+++.||.+|+.+..+ .+++++|++|+.+|||.++
T Consensus 109 ~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~ 186 (304)
T 3lsn_A 109 CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALI 186 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHH
Confidence 999999999999999999874 23 3667777777 4599999999998875 4899999999999999987
Q ss_pred ------------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHH
Q psy3879 159 ------------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYV 190 (247)
Q Consensus 159 ------------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l 190 (247)
||++| ++|++.||+|++.++|++.|......+
T Consensus 187 ~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 187 EASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 77776 357888888888888888888888888
Q ss_pred HHHHHHHHhcCCC
Q psy3879 191 VAIALEKVQSLGH 203 (247)
Q Consensus 191 ~~~a~q~~~~l~~ 203 (247)
+..|.+.+..++.
T Consensus 267 ~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 267 RDQALHALRPFDA 279 (304)
T ss_dssp HHHHHHHTTTSCG
T ss_pred HHHHHHHHHhCch
Confidence 8888888888764
No 2
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.1e-43 Score=311.27 Aligned_cols=181 Identities=16% Similarity=0.254 Sum_probs=153.8
Q ss_pred hhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHHH
Q psy3879 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTI 91 (247)
Q Consensus 12 ~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~Ai 91 (247)
+.+.++++|++..||||+||.|++++++++|++++.+..+|+++|+||+||||||||||+|++|||+||+|++||++.||
T Consensus 28 ~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AI 107 (295)
T 3ipi_A 28 PGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGAL 107 (295)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhcCC
Q psy3879 92 NAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRRGI 171 (247)
Q Consensus 92 ~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~g~ 171 (247)
|+||+|++.+|+++++. .+++++.+++++.+++.||.+|+.+..+ .+++++|++|+++|||.++.-.+..+.+..|.
T Consensus 108 laGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~ 184 (295)
T 3ipi_A 108 LCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGGA 184 (295)
T ss_dssp HHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 5789999999999999999999998765 37889999999999999986555555555555
Q ss_pred CchhhhhcHHHHHHHHHHHHHHHHHHHhc
Q psy3879 172 PVAHSIYGIASTINAANYVVAIALEKVQS 200 (247)
Q Consensus 172 ~t~~~~~g~~~ai~~~~~l~~~a~q~~~~ 200 (247)
+. ....++..++..+|.|||+.||
T Consensus 185 ~~-----~~~~~l~~~g~~lGlaFQI~DD 208 (295)
T 3ipi_A 185 EE-----ELAERFSHFGNALGTAYQIVDD 208 (295)
T ss_dssp CH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2344556666666666666655
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.8e-43 Score=315.82 Aligned_cols=185 Identities=17% Similarity=0.268 Sum_probs=168.7
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHH
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAST 90 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~A 90 (247)
++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++|||||||||+|++|||+||+|++||++.|
T Consensus 38 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~A 117 (341)
T 3mzv_A 38 APRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSS 117 (341)
T ss_dssp CTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHH
T ss_pred ChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhcC
Q psy3879 91 INAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRRG 170 (247)
Q Consensus 91 i~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~g 170 (247)
||+||||++++|+.+.+.+.+++++.+++++.+++.||.+|+.+..+. .+++++|++|+.+|||.++.-.+-.+.+..|
T Consensus 118 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag 196 (341)
T 3mzv_A 118 VLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNL-ATTEDIYLRVIRGKTAALFSAATEVGGIIGG 196 (341)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHcchHHHHHHHHHHHHHHcC
Confidence 999999999999999998889999999999999999999999988764 6899999999999999999988888888888
Q ss_pred CCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 171 IPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 171 ~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.+. ....++..++..+|.|||+.||+
T Consensus 197 ~~~-----~~~~~l~~~g~~lG~aFQI~DD~ 222 (341)
T 3mzv_A 197 APE-----DQVQALFDYGDALGIAFQIVDDL 222 (341)
T ss_dssp CCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 45678899999999999999985
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.4e-44 Score=317.02 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=161.3
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchh
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~ 88 (247)
..++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||+||||||||||+|++|||+||+|++||++
T Consensus 30 ~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 30 DSNALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNK 109 (334)
T ss_dssp CCCHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhh
Q psy3879 89 STINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILR 168 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr 168 (247)
.|||+||||++.+++.+++.+.+++++.+++++.+++.||.+|+.+..+. .+|+++|++|+.+|||.++.-++..+.+.
T Consensus 110 ~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~~t~~~y~~~i~~KTa~L~~~~~~~ga~l 188 (334)
T 3rmg_A 110 VSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNH-SFSEEVYFDVIRKKTAALFAACAEAAALS 188 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999988764 58999999999999999999888888888
Q ss_pred cCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 169 RGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 169 ~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.|.+. ....++..++..+|.|||+.||+
T Consensus 189 ag~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 216 (334)
T 3rmg_A 189 VQVGE-----EEVAFARLLGEYIGICFQIKDDI 216 (334)
T ss_dssp TTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88775 45678899999999999999984
No 5
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=9.4e-44 Score=311.90 Aligned_cols=193 Identities=23% Similarity=0.245 Sum_probs=167.4
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|+ ..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||+
T Consensus 26 ~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~ 104 (297)
T 3m0g_A 26 PAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDD 104 (297)
T ss_dssp CCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcCh
Confidence 467899999999 8999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC--Ch----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh-
Q psy3879 88 ASTINAANYVVAIALEKVQSLG--HP----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI- 158 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~--~~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~- 158 (247)
+.|||+||+|++.+|+.+++.. .+ ++++.+++++ .+++.||.+|+.+......+++++|++|+.+|||.++
T Consensus 105 ~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~ 184 (297)
T 3m0g_A 105 ATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALIS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHH
Confidence 9999999999999999998863 22 4677888888 8899999999999843336899999999999999987
Q ss_pred -------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHHHHHH
Q psy3879 159 -------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVVAIAL 195 (247)
Q Consensus 159 -------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~ 195 (247)
||++| ++|++.||+|++.++|++.|......++..|.
T Consensus 185 ~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 185 FAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 25888888999999999888888888888888
Q ss_pred HHHhcCCC
Q psy3879 196 EKVQSLGH 203 (247)
Q Consensus 196 q~~~~l~~ 203 (247)
+.+..++.
T Consensus 265 ~~L~~~~~ 272 (297)
T 3m0g_A 265 AALAPYGE 272 (297)
T ss_dssp HHTGGGGG
T ss_pred HHHHhCCC
Confidence 88888764
No 6
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.5e-43 Score=316.44 Aligned_cols=186 Identities=17% Similarity=0.251 Sum_probs=166.4
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhH
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~ 89 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++|||||||||+|++|||+||+|++||++.
T Consensus 49 ~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~ 128 (345)
T 3oyr_A 49 DVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQ 128 (345)
T ss_dssp SSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHH
T ss_pred CChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhc
Q psy3879 90 TINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRR 169 (247)
Q Consensus 90 Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~ 169 (247)
|||+||||++.+|+.+++.+++++++.+++++.+++.||.+|+.+..+. .+++++|++|+.+|||.++.-.+..+.+..
T Consensus 129 AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~la 207 (345)
T 3oyr_A 129 SVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDL-NLSQAVYLEIIQAKTAELFAAASEAGAVSA 207 (345)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCS-SCCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHcchHHHHHHHHHHHHHHc
Confidence 9999999999999999998889999999999999999999999988764 589999999999999999999998888888
Q ss_pred CCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 170 GIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 170 g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|.+. ....++..++..+|.|||+.||+
T Consensus 208 g~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 234 (345)
T 3oyr_A 208 GVDV-----AKSEALRDYGLNLGLAFQLADDA 234 (345)
T ss_dssp TCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 45678999999999999999985
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-43 Score=309.42 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=157.5
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcc
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEE-KLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYG 86 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~-~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G 86 (247)
.++.+.++++|++..||||+||.|++++++++|++.+ .+..+|+++||||++||||||| ||+|++|||+||+|++||
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G 113 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFG 113 (302)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHC
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcC
Confidence 5788999999999999999999999999999999877 8999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh-
Q psy3879 87 IASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI- 158 (247)
Q Consensus 87 ~~~Ai~~gd~l~~~~~~~l~~~~~~-----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~- 158 (247)
++.|||+||+|++.+|+.+++.+.+ ++++.+++++ .+++.||.+|+.+... .+++++|.+|+.+|||.++
T Consensus 114 ~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~ 191 (302)
T 3p8l_A 114 EATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV--SLTLEELAAVHEKKTGALIE 191 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC--CCCHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999986432 4667777776 7899999999998765 5899999999999999998
Q ss_pred ----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHHH
Q psy3879 159 ----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVVA 192 (247)
Q Consensus 159 ----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~~ 192 (247)
||++| ++|++.||+|++.++|++.|-.....+..
T Consensus 192 ~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~ 271 (302)
T 3p8l_A 192 FALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLA 271 (302)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55554 24566666666666666666666666666
Q ss_pred HHHHHHhcC
Q psy3879 193 IALEKVQSL 201 (247)
Q Consensus 193 ~a~q~~~~l 201 (247)
.|.+.+..+
T Consensus 272 ~A~~~L~~~ 280 (302)
T 3p8l_A 272 EGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666655
No 8
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=9e-44 Score=313.05 Aligned_cols=189 Identities=22% Similarity=0.230 Sum_probs=163.7
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHH--HHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhc
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKL--LAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIY 85 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~--~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~ 85 (247)
.++.+.++++|++..||||+||.|++++++++|++.+++ ..+|+++||||++||||||| ||+|++|||+||+|++|
T Consensus 32 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~ 111 (309)
T 3pde_A 32 QDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKF 111 (309)
T ss_dssp SCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhc
Confidence 468899999999999999999999999999999998888 99999999999999999999 99999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh
Q psy3879 86 GIASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI 158 (247)
Q Consensus 86 G~~~Ai~~gd~l~~~~~~~l~~~~~~-----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~ 158 (247)
|++.|||+||+|++.+|+.+++.+.+ ++++.++++. .+++.||.+|+.+... .+|+++|.+|+++|||.++
T Consensus 112 G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~ 189 (309)
T 3pde_A 112 GAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV--NLPLSQLRVLHKEKTGALL 189 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC--CCCHHHHHHHHHhccHHHH
Confidence 99999999999999999999986532 4677788776 7899999999998765 5899999999999999988
Q ss_pred -----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHH
Q psy3879 159 -----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVV 191 (247)
Q Consensus 159 -----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~ 191 (247)
||++| ++|++.||+|++.++|++.|-.....++
T Consensus 190 ~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~ 269 (309)
T 3pde_A 190 HYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTI 269 (309)
T ss_dssp HHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHH
Confidence 66665 2466777777777777777777777777
Q ss_pred HHHHHHHhc
Q psy3879 192 AIALEKVQS 200 (247)
Q Consensus 192 ~~a~q~~~~ 200 (247)
..|.+.++.
T Consensus 270 ~~a~~~l~~ 278 (309)
T 3pde_A 270 HSGQAALQG 278 (309)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777766
No 9
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3e-43 Score=311.59 Aligned_cols=192 Identities=24% Similarity=0.302 Sum_probs=166.4
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||+
T Consensus 34 ~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~ 113 (324)
T 3ts7_A 34 MPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDE 113 (324)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcCh
Confidence 47899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC--C--h----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLG--H--P----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~--~--~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
+.|||+||+|++.+|+.+++.+ + + ++++.++++. .+++.||.+|+.+..+ .+++++|++|+.+|||.|
T Consensus 114 ~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L 191 (324)
T 3ts7_A 114 ATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGAL 191 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHH
Confidence 9999999999999999999874 2 3 4667777765 7899999999998875 689999999999999998
Q ss_pred h------------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHH
Q psy3879 158 I------------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANY 189 (247)
Q Consensus 158 ~------------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~ 189 (247)
+ ||++| ++|++.||+|++.++|++.|......
T Consensus 192 ~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~ 271 (324)
T 3ts7_A 192 IRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEE 271 (324)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 7 66665 25778888888888888888888888
Q ss_pred HHHHHHHHHhcCCC
Q psy3879 190 VVAIALEKVQSLGH 203 (247)
Q Consensus 190 l~~~a~q~~~~l~~ 203 (247)
++..|.+.++.++.
T Consensus 272 ~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 272 MHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHhCCc
Confidence 88888888877764
No 10
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.6e-43 Score=311.43 Aligned_cols=191 Identities=23% Similarity=0.243 Sum_probs=161.8
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++||||||| ||+|++|||+||+|++||+
T Consensus 26 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~ 105 (301)
T 1rtr_A 26 MDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGE 105 (301)
T ss_dssp SCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCH
Confidence 45789999999999999999999999999999998888899999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc-C-----ChHHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh-
Q psy3879 88 ASTINAANYVVAIALEKVQSL-G-----HPEATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI- 158 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~-~-----~~~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~- 158 (247)
+.||++||+|++.+|+++++. + ..++++.+++++ .+++.||.+|+.+..+ .+++++|++|+++|||.++
T Consensus 106 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~ 183 (301)
T 1rtr_A 106 WTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLT 183 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHH
Confidence 999999999999999999987 2 234677888887 8899999999998765 6899999999999999998
Q ss_pred ----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHHH
Q psy3879 159 ----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVVA 192 (247)
Q Consensus 159 ----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~~ 192 (247)
||++| ++|++.||+|++.++|.+.+......+..
T Consensus 184 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~ 263 (301)
T 1rtr_A 184 FAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRD 263 (301)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 66665 25667777777777777777777777777
Q ss_pred HHHHHHhcCC
Q psy3879 193 IALEKVQSLG 202 (247)
Q Consensus 193 ~a~q~~~~l~ 202 (247)
.|.+.++.++
T Consensus 264 ~A~~~L~~l~ 273 (301)
T 1rtr_A 264 AAVDELTQID 273 (301)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhCC
Confidence 7777777664
No 11
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-43 Score=303.79 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=167.9
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++++.+..+|+++|+||++||||||| ||+|++|||+||+|++||+
T Consensus 30 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~ 109 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGE 109 (284)
T ss_dssp SCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCH
T ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCH
Confidence 46789999999999999999999999999999999899999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSIL 167 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~l 167 (247)
+.|||+||+|++.+|+.+++.+.+++++.+++++.+++.||.+|+.+..+...+++++|++|+++|||.++.-.+..+.+
T Consensus 110 ~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~ 189 (284)
T 2ftz_A 110 DIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFI 189 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999866689999999999999999999998866335899999999999999999888877777
Q ss_pred hcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhc
Q psy3879 168 RRGIPVAHSIYGIASTINAANYVVAIALEKVQS 200 (247)
Q Consensus 168 r~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~ 200 (247)
..|.+. + ++..++..+|.|||+.||
T Consensus 190 lag~~~-------~-~l~~~g~~lG~aFQI~DD 214 (284)
T 2ftz_A 190 LXGXDH-------T-XMXLLGEXFGVAFQIYDD 214 (284)
T ss_dssp HHTCCC-------H-HHHHHHHHHHHHHHHHHH
T ss_pred HhCCCh-------h-HHHHHHHHHHHHHHHHHh
Confidence 777664 1 778888888889988876
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=3.1e-43 Score=311.51 Aligned_cols=194 Identities=25% Similarity=0.293 Sum_probs=163.9
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcc
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYG 86 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G 86 (247)
..++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++||||||| ||+|++|||+||+|++||
T Consensus 57 ~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G 136 (324)
T 3uca_A 57 EYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFG 136 (324)
T ss_dssp SSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHC
T ss_pred CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcC
Confidence 347899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh
Q psy3879 87 IASTINAANYVVAIALEKVQSLGH------PEATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI 158 (247)
Q Consensus 87 ~~~Ai~~gd~l~~~~~~~l~~~~~------~~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~ 158 (247)
++.|||+||+|++.+|+.+++.+. .++++.++++. .+++.||.+|+.+..+. .+++++|++|+++|||.++
T Consensus 137 ~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~-~~t~~~y~~i~~~KTa~L~ 215 (324)
T 3uca_A 137 EAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKE-EISLKELDYMHLKKTGELI 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCS-SCCHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCC-CCCHHHHHHHHhcchHHHH
Confidence 999999999999999999988531 34666777765 68999999999998764 6899999999999999987
Q ss_pred -----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHH
Q psy3879 159 -----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVV 191 (247)
Q Consensus 159 -----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~ 191 (247)
||++| ++|++.||+|++.++|++.|......+.
T Consensus 216 ~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~ 295 (324)
T 3uca_A 216 KASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNIT 295 (324)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 66665 2577777788888888877777777777
Q ss_pred HHHHHHHhcCCC
Q psy3879 192 AIALEKVQSLGH 203 (247)
Q Consensus 192 ~~a~q~~~~l~~ 203 (247)
..|.+.+..++.
T Consensus 296 ~~A~~~L~~l~~ 307 (324)
T 3uca_A 296 EECIEILSSIKG 307 (324)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHHHHhCCC
Confidence 777777777753
No 13
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-43 Score=316.29 Aligned_cols=185 Identities=21% Similarity=0.216 Sum_probs=172.2
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHH
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAST 90 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~A 90 (247)
++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||+||||||||||+|++|||+||+|++||++.|
T Consensus 31 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~A 110 (342)
T 1wy0_A 31 PRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMA 110 (342)
T ss_dssp SHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHH
Confidence 67899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccch
Q psy3879 91 INAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNS 165 (247)
Q Consensus 91 i~~gd~l~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~ 165 (247)
||+||+|++.+|+.+++. ..+++++.+++++.+++.||.+|+.|..+. ..++++|++|+.+|||.++.-.+..+
T Consensus 111 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~g 189 (342)
T 1wy0_A 111 ILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVG 189 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999987 335788999999999999999999998764 57999999999999999999888888
Q ss_pred hhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 166 ILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 166 ~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.+..|.+. ....++..++..+|.|||+.||+
T Consensus 190 a~lag~~~-----~~~~~l~~~g~~lG~aFQI~DD~ 220 (342)
T 1wy0_A 190 GIIGTDNE-----EYIKALSSWGRNVGIAFQIWDDV 220 (342)
T ss_dssp HHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 45678999999999999999985
No 14
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=2.3e-43 Score=313.81 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=174.6
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhH
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~ 89 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||+||||||||||+|++|||+||+|++||++.
T Consensus 28 ~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~ 107 (325)
T 3aqb_B 28 DSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDT 107 (325)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHH
T ss_pred cchHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHH
Confidence 46789999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhc
Q psy3879 90 TINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRR 169 (247)
Q Consensus 90 Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~ 169 (247)
|||+||||++.+|+.+++.+.+++++.+++++.+++.||.+|+.|..+. .+++++|++|+.+|||.++.-.+..+.+..
T Consensus 108 AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~la 186 (325)
T 3aqb_B 108 AIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNY-PVSFTAYLRRINRKTAILIEASCHLGALSS 186 (325)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 9999999999999999998888999999999999999999999988764 589999999999999999999998888888
Q ss_pred CCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 170 GIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 170 g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|.+. ....++..++..+|.|||+.||+
T Consensus 187 g~~~-----~~~~~l~~~g~~lG~afQi~DD~ 213 (325)
T 3aqb_B 187 QLDE-----QSTYHIKQFGHCIGMSYQIIDDI 213 (325)
T ss_dssp TCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8775 45678899999999999999985
No 15
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=7.1e-43 Score=308.34 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=158.9
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcchh
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~~ 88 (247)
++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||++
T Consensus 30 ~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~ 109 (317)
T 4f62_A 30 ANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEA 109 (317)
T ss_dssp GHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHH
T ss_pred cHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHH
Confidence 7899999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--Ch----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh--
Q psy3879 89 STINAANYVVAIALEKVQSLG--HP----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI-- 158 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~--~~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~-- 158 (247)
.|||+||+|++.+|+.+++.+ .+ ++++.+++++ .+++.||.+|+.+... .+++++|++|+.+|||.|+
T Consensus 110 ~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~ 187 (317)
T 4f62_A 110 TAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENK--NISLAELEQMHVHKTGALIKA 187 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSS--CCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCC--CCCHHHHHHHHHhchHHHHHH
Confidence 999999999999999999863 23 3566677765 4799999999998754 5899999999999999987
Q ss_pred ----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHHH
Q psy3879 159 ----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVVA 192 (247)
Q Consensus 159 ----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~~ 192 (247)
||++| ++|++.|++|++.++|++.|......+..
T Consensus 188 a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~ 267 (317)
T 4f62_A 188 SVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHE 267 (317)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77766 35788888888888888888888888888
Q ss_pred HHHHHHhcCCC
Q psy3879 193 IALEKVQSLGH 203 (247)
Q Consensus 193 ~a~q~~~~l~~ 203 (247)
.|.+.++.++.
T Consensus 268 ~A~~~L~~l~~ 278 (317)
T 4f62_A 268 QAIAQISEFGD 278 (317)
T ss_dssp HHHHHHGGGGG
T ss_pred HHHHHHHhCch
Confidence 88888888753
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.3e-43 Score=312.02 Aligned_cols=185 Identities=51% Similarity=0.836 Sum_probs=170.0
Q ss_pred CCcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcch
Q psy3879 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 8 ~~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~ 87 (247)
.+.++.+.++++|++..||||+||.|+++++++++.+.+.+..+|+++|+||+||||||||||+|++|||+||+|++||+
T Consensus 7 ~~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~ 86 (301)
T 2q80_A 7 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGI 86 (301)
T ss_dssp CCHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCH
T ss_pred CCCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcchhhccCc
Confidence 35678899999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSIL 167 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~l 167 (247)
+.|||+||||++.+++.+++.++|++++.+++.+.+++.||.+|+.|..+...+++++|++|+++|||.++.-.+..+.+
T Consensus 87 ~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~ 166 (301)
T 2q80_A 87 PSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQL 166 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999998765446899999999999999999888877777
Q ss_pred hcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 168 RRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 168 r~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
..|.+. .+..++..+|.|||+.||+
T Consensus 167 ~a~~~~---------~l~~~g~~lG~aFQi~DD~ 191 (301)
T 2q80_A 167 FSDYKE---------DLKPLLNTLGLFFQIRDDY 191 (301)
T ss_dssp TCCCCS---------CCHHHHHHHHHHHHHHHHH
T ss_pred HCCChH---------HHHHHHHHHHHHHHHHHHH
Confidence 777663 2567788999999999985
No 17
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=5.9e-43 Score=307.63 Aligned_cols=192 Identities=22% Similarity=0.254 Sum_probs=148.3
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||+
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~ 113 (302)
T 3p8r_A 34 QTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDE 113 (302)
T ss_dssp TTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCH
Confidence 46789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC----h----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLGH----P----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~~----~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
+.|||+||+|++.+|+.+++.+. + ++++.++++. .+++.||.+|+.|... .+++++|++|+++|||.+
T Consensus 114 ~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTa~L 191 (302)
T 3p8r_A 114 ATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENR--LISLEELETIHRNKTGAL 191 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCC--CCCHHHHHHHhccCcHHH
Confidence 99999999999999999998741 2 3566777775 6899999999999753 689999999999999998
Q ss_pred h------------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHH
Q psy3879 158 I------------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANY 189 (247)
Q Consensus 158 ~------------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~ 189 (247)
+ ||++| ++|++.||+|++.++|++.|......
T Consensus 192 ~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 271 (302)
T 3p8r_A 192 MRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHT 271 (302)
T ss_dssp HHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHH
Confidence 7 56555 24667777777777777777777777
Q ss_pred HHHHHHHHHhcCCC
Q psy3879 190 VVAIALEKVQSLGH 203 (247)
Q Consensus 190 l~~~a~q~~~~l~~ 203 (247)
+...|.+.++.++.
T Consensus 272 ~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 272 LLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhCCc
Confidence 77777777776653
No 18
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=7e-43 Score=303.46 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=165.7
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCCCCCchhhhcch
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIE-DNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~-D~s~~RRG~p~~h~~~G~ 87 (247)
..+..+.++++|++..||||+||.|++++++++|++.+++..+|+++|+||++|||||||+ |++++|||+||+|++||+
T Consensus 23 ~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~ 102 (274)
T 3kra_B 23 RPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGP 102 (274)
T ss_dssp CSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCH
T ss_pred CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcCh
Confidence 3456799999999999999999999999999999999999999999999999999999998 777789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCh-------HHHHHH---HHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLGHP-------EATAVY---TEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFD 155 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~~~-------~~~~~~---~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~ 155 (247)
+.|||+||+|++.+|+.+++.+.+ ++++.+ ++++ .+++.||.+|+.|..+ .+++++|++|+++|||
T Consensus 103 ~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa 180 (274)
T 3kra_B 103 NVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDG--NTSLDFIEYVCKKKYG 180 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTT--SSCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCC--CCCHHHHHHHHHHHHH
Confidence 999999999999999999987653 344444 4444 6789999999998865 5899999999999999
Q ss_pred hhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 156 MRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 156 ~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.++.-.+..+.+..|.+. ....++..++..+|.|||++||.
T Consensus 181 ~L~~~a~~lGailaga~~-----~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 181 EMHACGAACGAILGGAAE-----EEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988888888888775 45578999999999999999986
No 19
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=4.8e-43 Score=314.15 Aligned_cols=187 Identities=24% Similarity=0.199 Sum_probs=173.7
Q ss_pred CcchhHHhHHHHhh-----------cCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy3879 9 EQDEKLLQPYTYIS-----------QVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRG 77 (247)
Q Consensus 9 ~~~~~l~~~~~y~~-----------~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG 77 (247)
..++.+.++..|.+ ..||||+||.|++++++++|++.+.+..+|+++||||++|||||||||+|++|||
T Consensus 26 ~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG 105 (352)
T 3nf2_A 26 RLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRH 105 (352)
T ss_dssp TSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHTCCEETT
T ss_pred ccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 34667888999988 6899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhcchhHHHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhh
Q psy3879 78 IPVAHSIYGIASTINAANYVVAIALEKVQSLGHP---EATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKF 154 (247)
Q Consensus 78 ~p~~h~~~G~~~Ai~~gd~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt 154 (247)
+||+|++||++.|||+||||++.+|+.+++.++| ++++.+++++.+++.||.+|+.|..+. .+|+++|++|+.+||
T Consensus 106 ~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~~~-~~t~~~y~~~i~~KT 184 (352)
T 3nf2_A 106 RDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKT 184 (352)
T ss_dssp EECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHT
T ss_pred CccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHccc
Confidence 9999999999999999999999999999998877 688999999999999999999998764 689999999999999
Q ss_pred hhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 155 DMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 155 ~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|.++.-.+..+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 185 a~L~~~~~~~ga~lag~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 185 GALLACASSIGAVLGGADE-----RTADTLEKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888876 45678999999999999999985
No 20
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=3.3e-43 Score=309.14 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=166.2
Q ss_pred hHHHHhhcCCCcchHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHHHHHH
Q psy3879 16 QPYTYISQVPGKQIRTKLAYAFNNWLNI-PEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAA 94 (247)
Q Consensus 16 ~~~~y~~~~~GK~~R~~l~~~~~~~~~~-~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~Ai~~g 94 (247)
++++|++..||||+||.|++++++++|+ +.+.+..+|+++|+||+||||||||||+|++|||+||+|++||++.|||+|
T Consensus 30 ~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 109 (299)
T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 109 (299)
T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHH
Confidence 8999999999999999999999999998 778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhcCCCch
Q psy3879 95 NYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRRGIPVA 174 (247)
Q Consensus 95 d~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~g~~t~ 174 (247)
|+|++.+|+++++.+.+++++.+++++.+++.||.+|+.|..+. +++++|++|+.+|||.++.-.+..+.+..|.+.
T Consensus 110 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~- 186 (299)
T 1v4e_A 110 DLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGELG- 186 (299)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-
Confidence 99999999999998888999999999999999999999998764 899999999999999999998888888888764
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 175 HSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 175 ~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.++..++..+|.|||+.||+
T Consensus 187 -------~~l~~~g~~lG~aFQi~DD~ 206 (299)
T 1v4e_A 187 -------EDLYNLGVTIGTIYQMFDDI 206 (299)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999974
No 21
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=7.2e-43 Score=310.80 Aligned_cols=191 Identities=24% Similarity=0.265 Sum_probs=160.9
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++++.+..+|+++|+||++||||||| ||+|++|||+||+|++||+
T Consensus 69 ~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~ 148 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDE 148 (335)
T ss_dssp CCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcCh
Confidence 46889999999999999999999999999999999888999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--C-C----hHHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSL--G-H----PEATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI 158 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~--~-~----~~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~ 158 (247)
+.|||+||+|++.+|+++.+. + . .++++.+++++ .+++.||.+|+.+..+ .+++++|++|+.+|||.++
T Consensus 149 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~ 226 (335)
T 2h8o_A 149 ATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALL 226 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHH
Confidence 999999999999999999987 2 1 24677888888 8899999999998876 6899999999999999988
Q ss_pred -----------------------------------ccccc------------chhhhcCCCchhhhhcHHHHHHHHHHHH
Q psy3879 159 -----------------------------------DDIED------------NSILRRGIPVAHSIYGIASTINAANYVV 191 (247)
Q Consensus 159 -----------------------------------dd~~d------------~~~lr~g~~t~~~~~g~~~ai~~~~~l~ 191 (247)
||++| ++|++.||+|++.++|++.+......+.
T Consensus 227 ~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~ 306 (335)
T 2h8o_A 227 RFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306 (335)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 55555 2456666666666666666666666666
Q ss_pred HHHHHHHhcCC
Q psy3879 192 AIALEKVQSLG 202 (247)
Q Consensus 192 ~~a~q~~~~l~ 202 (247)
..|.+.++.++
T Consensus 307 ~~A~~~L~~l~ 317 (335)
T 2h8o_A 307 AEASELLAPYG 317 (335)
T ss_dssp HHHHHHTGGGG
T ss_pred HHHHHHHHhCc
Confidence 66666666654
No 22
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.4e-42 Score=305.31 Aligned_cols=184 Identities=18% Similarity=0.254 Sum_probs=154.4
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++||||||| ||+|++|||+||+|++||+
T Consensus 28 ~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~ 107 (299)
T 1rqj_A 28 QNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGE 107 (299)
T ss_dssp TTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcCh
Confidence 35789999999999999999999999999999999899999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc---C-Ch----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSL---G-HP----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~---~-~~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
+.|||+||+|++.+|+++++. + .+ ++++.+++++ .+++.||.+|+.+..+ .+++++|++|+++|||.+
T Consensus 108 ~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L 185 (299)
T 1rqj_A 108 ANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK--HVPLDALERIHRHKTGAL 185 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHH
Confidence 999999999999999999985 1 12 4566777776 7999999999998765 589999999999999999
Q ss_pred hcccccchhhh-cCCCchhhhhcHHHHHHHHHHHHHHHHHHHhc
Q psy3879 158 IDDIEDNSILR-RGIPVAHSIYGIASTINAANYVVAIALEKVQS 200 (247)
Q Consensus 158 ~dd~~d~~~lr-~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~ 200 (247)
+.-.+..+.+. .|.+. ....++..++..+|.|||+.||
T Consensus 186 ~~~~~~~ga~l~ag~~~-----~~~~~l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 186 IRAAVRLGALSAGDKGR-----RALPVLDKYAESIGLAFQVQDD 224 (299)
T ss_dssp HHHHHHHHHHTTTHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 85555555444 44332 2334555556666666666654
No 23
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=8.3e-43 Score=313.41 Aligned_cols=186 Identities=19% Similarity=0.266 Sum_probs=171.3
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHH
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAST 90 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~A 90 (247)
++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++|||||||||+|++|||+||+|++||++.|
T Consensus 30 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~A 109 (358)
T 4dhd_A 30 AEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAA 109 (358)
T ss_dssp CHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHH
T ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhHhhhhhhhhhc-----------cCCCCCCHHHHHHHhHHhhhhhh
Q psy3879 91 INAANYVVAIALEKVQSLGH-PEATAVYTEQLLELHRGQGMEIYWR-----------DNYTCPSEEEYRTMTIRKFDMRI 158 (247)
Q Consensus 91 i~~gd~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~dl~~~-----------~~~~~~s~~~Y~~ii~~Kt~~~~ 158 (247)
||+||+|++.+|+++...+. +++++.+++++.+++.||.+|+.|. .+...+|+++|++|+.+|||.++
T Consensus 110 Il~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~ 189 (358)
T 4dhd_A 110 ILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALI 189 (358)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHH
Confidence 99999999999999976544 5789999999999999999999987 33225799999999999999999
Q ss_pred cccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 159 dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.-.+..+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 190 ~~~~~~ga~lag~~~-----~~~~~l~~~g~~lG~aFQI~DD~ 227 (358)
T 4dhd_A 190 AAAAKWGVLSVSDDR-----GLAEAAWNFGMAAGVAFQIIDDV 227 (358)
T ss_dssp HHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888775 45678999999999999999985
No 24
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=7.2e-43 Score=312.24 Aligned_cols=187 Identities=34% Similarity=0.545 Sum_probs=168.5
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchh
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~ 88 (247)
..++.+.++++|++..||||+||.|++++++++|.+.+.+..+|+++|+||+||||||||||+|++|||+||+|++||++
T Consensus 23 ~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~ 102 (340)
T 2e8v_A 23 QNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVP 102 (340)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHH
T ss_pred cChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCcchhhccCch
Confidence 45678999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHhHhhhhhhhhhccCC--CCCCHHHHHHHhHHhhhhhhccc
Q psy3879 89 STINAANYVVAIALEKVQSLGHPE-----ATAVYTEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTIRKFDMRIDDI 161 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~Gq~~dl~~~~~~--~~~s~~~Y~~ii~~Kt~~~~dd~ 161 (247)
.|||+||||++.+|+++++.+.+. +++.+++++.+++.||.+|+.|..+. ..+++++|++|+.+|||.++.-.
T Consensus 103 ~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~ 182 (340)
T 2e8v_A 103 STINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLT 182 (340)
T ss_dssp HHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999987766 88999999999999999999987654 35799999999999999999988
Q ss_pred ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 162 EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 162 ~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
+..+.+..|.+. ...++..++..+|.|||+.||+
T Consensus 183 ~~~ga~lag~~~------~~~~l~~~g~~lG~aFQi~DD~ 216 (340)
T 2e8v_A 183 LRLMEALSPSSH------HGHSLVPFINLLGIIYQIRDDY 216 (340)
T ss_dssp HHHHHHHCCC------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777663 1356778899999999999985
No 25
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1e-42 Score=310.22 Aligned_cols=185 Identities=21% Similarity=0.184 Sum_probs=170.0
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhH
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAS 89 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~ 89 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++|||||||||+|++|||+||+|++||++.
T Consensus 23 ~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~ 102 (330)
T 1wmw_A 23 PDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPL 102 (330)
T ss_dssp SSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHH
T ss_pred ccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCCccccccCchH
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHhHhhhhhhhhh-ccCCCCCCHHHHHHHhHHhhhhh-hcccc
Q psy3879 90 TINAANYVVAIALEKVQSLGH-----PEATAVYTEQLLELHRGQGMEIYW-RDNYTCPSEEEYRTMTIRKFDMR-IDDIE 162 (247)
Q Consensus 90 Ai~~gd~l~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~dl~~-~~~~~~~s~~~Y~~ii~~Kt~~~-~dd~~ 162 (247)
|||+||+|++.+|+++++.++ +++++.+++++.+++.||.+|+.| ..+...+++++|++|+.+|||.+ +.-.+
T Consensus 103 AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~ 182 (330)
T 1wmw_A 103 ALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPL 182 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHH
Confidence 999999999999999998632 689999999999999999999998 76523689999999999999999 99999
Q ss_pred cchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 163 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 163 d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
..+.+..|.+. ... +..++..+|.|||+.||+
T Consensus 183 ~~ga~lag~~~-----~~~--l~~~g~~lG~aFQi~DD~ 214 (330)
T 1wmw_A 183 RLGALLAGKTP-----PAA--YEEGGLRLGTAFQIVDDV 214 (330)
T ss_dssp HHHHHHTTCCC-----CHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCH-----HHH--HHHHHHHHHHHHHHHHcc
Confidence 88888888775 222 888899999999999984
No 26
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=9.6e-43 Score=312.51 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=161.0
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchh
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLN-IPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~-~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~ 88 (247)
.++.+.++++|++..||||+||.|+++++++++ .+.+.+..+|+++||||+||||||||||+|++|||+||+|++||++
T Consensus 58 ~~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~ 137 (360)
T 3lmd_A 58 GEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNS 137 (360)
T ss_dssp SCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChH
Confidence 478899999999999999999999999999998 7788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhh
Q psy3879 89 STINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILR 168 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr 168 (247)
.|||+||||++.+|+++++.+ +++++.+++++.+++.||.+|+.|..+. +++++|++|+.+|||.|+.-.+..+.+.
T Consensus 138 ~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~l 214 (360)
T 3lmd_A 138 VAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMH 214 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999984 7899999999999999999999988764 8999999999999999999888888888
Q ss_pred cCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 169 RGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 169 ~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.|.+. ....++..++..+|.|||+.||+
T Consensus 215 aga~~-----~~~~~l~~~g~~lG~aFQI~DDi 242 (360)
T 3lmd_A 215 AGAAP-----EHIDALKNFGAAVGMIFQIVDDI 242 (360)
T ss_dssp TTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 45678899999999999999985
No 27
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.8e-42 Score=308.77 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=171.5
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcc
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI--PEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYG 86 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~--~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G 86 (247)
..++.+.++++|++..||||+||.|++++++ +|+ +.+.+..+|+++||||++|||||||||+|++|||+||+|++||
T Consensus 38 ~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 38 LDNQPIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYG 116 (334)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHC
T ss_pred cCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcC
Confidence 3567899999999999999999999999999 554 7889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccch
Q psy3879 87 IASTINAANYVVAIALEKVQSLGH-PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNS 165 (247)
Q Consensus 87 ~~~Ai~~gd~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~ 165 (247)
++.|||+||||++.+|+.+++..+ +++++.+++.+.+++.||..|+.+..+. .+++++|++|+.+|||.++.-.+..+
T Consensus 117 ~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~~~~~yl~~i~~KTa~L~~~~~~~g 195 (334)
T 3pko_A 117 QRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYRE-DITLDAYLNEIAGKTAELFALSCYQG 195 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCT-TCCHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHcchHHHHHHHHHHH
Confidence 999999999999999999998765 8899999999999999999999987654 68999999999999999999988888
Q ss_pred hhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 166 ILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 166 ~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.+..|.+. ....++..++..+|.|||+.||+
T Consensus 196 a~lag~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 226 (334)
T 3pko_A 196 AQLAGAPQ-----SVIDRTRDIGIAIGCAYQMLDDI 226 (334)
T ss_dssp HHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888765 45678999999999999999985
No 28
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.2e-42 Score=303.86 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=168.7
Q ss_pred CCcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhh
Q psy3879 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP-EEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSI 84 (247)
Q Consensus 8 ~~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~-~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~ 84 (247)
+..++.+.++++|++..||||+||.|+++++++++++ .+.+..+|+++||||++||||||| ||+|++|||+||+|++
T Consensus 21 ~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~ 100 (291)
T 3npk_A 21 ESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKS 100 (291)
T ss_dssp CSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHH
T ss_pred cCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhh
Confidence 3456789999999999999999999999999999887 588999999999999999999999 9999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCC-h----HHHHHHHHH--HHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 85 YGIASTINAANYVVAIALEKVQSLGH-P----EATAVYTEQ--LLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 85 ~G~~~Ai~~gd~l~~~~~~~l~~~~~-~----~~~~~~~~~--~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
||++.|||+||+|++.+|+.+++.+. + ++++.++++ +.+++.||.+|+.|... .+++++|.+|+++|||.+
T Consensus 101 ~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTg~L 178 (291)
T 3npk_A 101 YDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK--RLSLNELEFLHTHKTARL 178 (291)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC--CCCHHHHHHHHHcccHHH
Confidence 99999999999999999999987642 2 467788888 88999999999998764 589999999999999999
Q ss_pred hcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 158 IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 158 ~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
+.-.+..+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 179 ~~~a~~~ga~laga~~-----~~~~~l~~~g~~lGlaFQI~DDi 217 (291)
T 3npk_A 179 IAAALKMGCEICELNN-----EESNQIYKLGLKLGLIFQINDDI 217 (291)
T ss_dssp HHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888765 34578899999999999999985
No 29
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.6e-42 Score=305.70 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=167.4
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCc
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPE------EKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPV 80 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~------~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~ 80 (247)
..++.+.++++|++..||||+||.|++++++++|++. +.+..+|+++||||++||||||| ||+|++|||+||
T Consensus 31 ~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt 110 (311)
T 3llw_A 31 SFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPT 110 (311)
T ss_dssp SSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEEC
T ss_pred CCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCc
Confidence 4567999999999999999999999999999999988 89999999999999999999999 999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHh--cCCh---HHHHHHHHH--HHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHh
Q psy3879 81 AHSIYGIASTINAANYVVAIALEKVQS--LGHP---EATAVYTEQ--LLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRK 153 (247)
Q Consensus 81 ~h~~~G~~~Ai~~gd~l~~~~~~~l~~--~~~~---~~~~~~~~~--~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~K 153 (247)
+|++||+..|||+||+|++.+|+.+++ .+.+ ++++.++++ +..++.||.+|+.+... .+++++|++|+.+|
T Consensus 111 ~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~K 188 (311)
T 3llw_A 111 LHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENT--PLNLEQLTFLHEHK 188 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--CCCHHHHHHHHHHh
Confidence 999999999999999999999999998 3222 366777777 57999999999998743 68999999999999
Q ss_pred hhhhhcccccchhhhcCCCchhhhhcHH-HHHHHHHHHHHHHHHHHhcC
Q psy3879 154 FDMRIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVAIALEKVQSL 201 (247)
Q Consensus 154 t~~~~dd~~d~~~lr~g~~t~~~~~g~~-~ai~~~~~l~~~a~q~~~~l 201 (247)
||.++.-.+..+.+..|.+. ... .++..++..+|.|||+.||+
T Consensus 189 Tg~L~~~a~~lga~laga~~-----~~~~~~l~~~g~~lGlaFQI~DDi 232 (311)
T 3llw_A 189 TAKLISASLIMGLVASGIKD-----EELFKWLQAFGLKMGLCFQVLDDI 232 (311)
T ss_dssp THHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888878765 334 67899999999999999985
No 30
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.7e-42 Score=303.61 Aligned_cols=185 Identities=22% Similarity=0.279 Sum_probs=166.2
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++||||++||||||| ||+|++|||+||+|++||+
T Consensus 34 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~ 113 (313)
T 3lom_A 34 PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDE 113 (313)
T ss_dssp CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcCh
Confidence 47899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-C--h-----HHHHHHHHHH--HHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLG-H--P-----EATAVYTEQL--LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~-~--~-----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
+.|||+||+|++.+|+.+++.. + + ++++.+++++ ..++.||.+|+.+..+. .+++++|++|+++|||.|
T Consensus 114 ~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~-~~t~~~y~~i~~~KTg~L 192 (313)
T 3lom_A 114 ATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKS-SVTEEQLREIHLLKTGKL 192 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSS-CCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCC-CCCHHHHHHHHHcCcHHH
Confidence 9999999999999999998862 1 2 3566677765 68999999999998764 689999999999999999
Q ss_pred hcccccchhhhcC--CCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 158 IDDIEDNSILRRG--IPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 158 ~dd~~d~~~lr~g--~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
+.-.+.. .+..| .+. ....++..++..+|.|||+.||+
T Consensus 193 ~~~a~~~-a~lag~~a~~-----~~~~~l~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 193 ILACFEM-VLAAQHEVSE-----QIKSALRTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp HHHHHHH-HHTTCSSCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877 77777 444 34568899999999999999985
No 31
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1e-41 Score=298.02 Aligned_cols=175 Identities=22% Similarity=0.220 Sum_probs=160.6
Q ss_pred chhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHH
Q psy3879 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIAST 90 (247)
Q Consensus 11 ~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~A 90 (247)
++.+.++++|++. ||||+||.|++++++++|++++.+..+|+++|+||++|||||||||+|++|||+||+|++||++.|
T Consensus 35 ~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~A 113 (289)
T 2azj_A 35 DWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKV 113 (289)
T ss_dssp CTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHH
Confidence 4569999999998 999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhc
Q psy3879 91 INAANYVVAIALEKV-QSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRR 169 (247)
Q Consensus 91 i~~gd~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~ 169 (247)
||+||+|++.+|+.+ ++.+ +++++.+++++.+++.||.+|+.+ +++|++++.+|||.++.-.+..+.+..
T Consensus 114 IlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la 184 (289)
T 2azj_A 114 IFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS 184 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc
Confidence 999999999999999 8874 688999999999999999999874 578999999999999998888777766
Q ss_pred CCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 170 GIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 170 g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
.+. ....++..++..+|.|||+.||+
T Consensus 185 -~~~-----~~~~~l~~~g~~lG~aFQi~DDi 210 (289)
T 2azj_A 185 -KHY-----NTKQQMLDVGKYLGIIYQVIDDF 210 (289)
T ss_dssp -TCG-----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 44678899999999999999984
No 32
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=9e-42 Score=306.26 Aligned_cols=187 Identities=21% Similarity=0.265 Sum_probs=142.0
Q ss_pred CcchhHHhHHHHhhcCC--CcchHHHHHHHHHHhcCCCh-----------------HHHHHHHHHHHHHHHHHHHhhhcc
Q psy3879 9 EQDEKLLQPYTYISQVP--GKQIRTKLAYAFNNWLNIPE-----------------EKLLAIGDIIQMLHNSSLLIDDIE 69 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~--GK~~R~~l~~~~~~~~~~~~-----------------~~~~~~a~avElih~asLihDDI~ 69 (247)
..++.+.++++|++..| |||+||.|+++++++++++. +++..+|+++||||+|||||||||
T Consensus 31 ~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~ 110 (348)
T 3apz_A 31 AEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVL 110 (348)
T ss_dssp CCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567999999999877 99999999999999998641 356889999999999999999999
Q ss_pred CCCCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHH
Q psy3879 70 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTM 149 (247)
Q Consensus 70 D~s~~RRG~p~~h~~~G~~~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~i 149 (247)
|+|++|||+||+|++||++.|||+||||++.+|+.+.+.+++++++.+++++.+++.||.+|+.+..+. .+++++|++|
T Consensus 111 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~ 189 (348)
T 3apz_A 111 DDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQ-RYSMDYYMQK 189 (348)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHH-HTCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999998888999999999999999999999887543 5799999999
Q ss_pred hHHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 150 TIRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 150 i~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
+.+|||.++.-.+..+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 190 i~~KTa~L~~~~~~~ga~lag~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 236 (348)
T 3apz_A 190 TYYKTASLISNSCKAVAVLTGQTA-----EVAVLAFEYGRNLGLAFQLIDDI 236 (348)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcchHHHHHHHHHHHHHHcCcCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888775 45677889999999999999985
No 33
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=4.3e-41 Score=292.19 Aligned_cols=185 Identities=9% Similarity=0.027 Sum_probs=160.6
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchh
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIA 88 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~ 88 (247)
..+..+.++++|++..||||+||.|++++++++|++.+++..+|+++||||++|||||||+|+|+ |||+||+|++||++
T Consensus 28 ~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~ 106 (273)
T 3qkc_B 28 RAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPN 106 (273)
T ss_dssp CCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHH
T ss_pred CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC------hHHHHHHHH---HH--HHhHhhhhhhhhhccCCCCCCHHHHHH-HhHHhhhh
Q psy3879 89 STINAANYVVAIALEKVQSLGH------PEATAVYTE---QL--LELHRGQGMEIYWRDNYTCPSEEEYRT-MTIRKFDM 156 (247)
Q Consensus 89 ~Ai~~gd~l~~~~~~~l~~~~~------~~~~~~~~~---~~--~~~~~Gq~~dl~~~~~~~~~s~~~Y~~-ii~~Kt~~ 156 (247)
.|||+||+|++.+|+++++... .++++.+.+ ++ .+++.||.+|+.+.. ..++ +|++ |+++|||.
T Consensus 107 ~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~---~~~~-eyl~~I~~~KTa~ 182 (273)
T 3qkc_B 107 IELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ---LNDL-ELIEYVCKKKEGT 182 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS---SCCH-HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC---CCCH-HHHHHHHHhhHHH
Confidence 9999999999999999998653 244555444 44 678999999998843 2454 5665 66999999
Q ss_pred hhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3879 157 RIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH 203 (247)
Q Consensus 157 ~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~ 203 (247)
++.-.+-.+.+..|.+. ....++..++..+|.|||+.||+..
T Consensus 183 L~~~a~~lGailaga~~-----~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 183 LHACGAACGAILGGCDE-----DKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp HHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888888888775 4557899999999999999999843
No 34
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=1.4e-41 Score=298.11 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=161.8
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCchhhhcch
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDI--EDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~~~~~~~~a~avElih~asLihDDI--~D~s~~RRG~p~~h~~~G~ 87 (247)
.++.+.++++|++..||||+||.|++++++++|++.+.+..+|+++|+||++||||||| ||+|++|||+||+|++||+
T Consensus 36 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~ 115 (293)
T 2j1p_A 36 EPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGE 115 (293)
T ss_dssp SSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCH
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCH
Confidence 45779999999999999999999999999999999889999999999999999999998 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-----ChHHHH---HHHHHH--HHhHhhhhhhhhhccCC-CCCCHHHHHHHhHHhhhh
Q psy3879 88 ASTINAANYVVAIALEKVQSLG-----HPEATA---VYTEQL--LELHRGQGMEIYWRDNY-TCPSEEEYRTMTIRKFDM 156 (247)
Q Consensus 88 ~~Ai~~gd~l~~~~~~~l~~~~-----~~~~~~---~~~~~~--~~~~~Gq~~dl~~~~~~-~~~s~~~Y~~ii~~Kt~~ 156 (247)
+.||++||+|++.+|+.+++.. .++..+ .+++++ .+++.||.+|+.+..+. ..+++++|..|+++|||.
T Consensus 116 ~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~ 195 (293)
T 2j1p_A 116 DVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAA 195 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHH
Confidence 9999999999999999999863 123444 444443 57999999999886531 146889999999999999
Q ss_pred hhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 157 RIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 157 ~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
++.-.+-.+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 196 L~~~a~~~ga~lag~~~-----~~~~~l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 196 LLEASAVLGGIIGGGSD-----EEIERLRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888765 45578899999999999999985
No 35
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=3.6e-41 Score=292.81 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=159.0
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcc
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI---PEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYG 86 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~---~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G 86 (247)
.++.+.++++|++..||||+||.|++++++++++ +.+.+..+|+++|+||+||||||||||+|++|||+||+|++||
T Consensus 29 ~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G 108 (285)
T 4fp4_A 29 EPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYG 108 (285)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHC
T ss_pred CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcC
Confidence 4789999999999999999999999999999998 7789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchh
Q psy3879 87 IASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSI 166 (247)
Q Consensus 87 ~~~Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~ 166 (247)
++.|||+||+|++.+++.+++.+ +++++.+++++.+++.||.+|+.+..+. |+++|||.++.-++..+.
T Consensus 109 ~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~ls~~~~~~~~GQ~lDl~~~~~~----------~i~~KTg~Lf~~a~~lGa 177 (285)
T 4fp4_A 109 DGRAIVASDWLIAESIKMAVNLG-ADVVTYLADVAQRLSVGQALDLEGERDK----------AAEFKTAPLIEAALVMPL 177 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHTTCHHH----------HHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHhccccc----------hhhcCcHHHHHHHHHHHH
Confidence 99999999999999999999975 5899999999999999999999876431 999999999999888888
Q ss_pred hhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 167 LRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 167 lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
+..|.+. ...++...+..+|.|||+.||+
T Consensus 178 ~lag~~~------~~~~l~~~G~~lGlAFQI~DDi 206 (285)
T 4fp4_A 178 VILGRRE------LIETAKKLGTKLGILYQYSDDY 206 (285)
T ss_dssp HHHTCGG------GHHHHHHHHHHHHHHTTCC---
T ss_pred HHcCChH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888761 3467888999999999999986
No 36
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=7.4e-41 Score=302.59 Aligned_cols=183 Identities=21% Similarity=0.194 Sum_probs=152.4
Q ss_pred hHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhh--
Q psy3879 13 KLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP------EEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSI-- 84 (247)
Q Consensus 13 ~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~------~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~-- 84 (247)
.+.+++.|++..||||+||.|++++++++|++ .+.++.+|+++||||++|||||||||+|++|||+||+|++
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~ 128 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVE 128 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHH
Confidence 57888889888999999999999999998764 7889999999999999999999999999999999999997
Q ss_pred --------------cchhHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHH
Q psy3879 85 --------------YGIASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEE 145 (247)
Q Consensus 85 --------------~G~~~Ai~~gd~l~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~ 145 (247)
||++.|||+||+|++++++++.+.+.+ ++.+.++.+..+++.||.+|+.+..+. .+++++
T Consensus 129 ~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-~~s~~~ 207 (380)
T 3lk5_A 129 ADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHA-NESVEL 207 (380)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHH
T ss_pred HhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHH
Confidence 599999999999999999999986532 456778888899999999999998765 579999
Q ss_pred HHHHhHHhhhhh-hcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 146 YRTMTIRKFDMR-IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 146 Y~~ii~~Kt~~~-~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|++|+.+|||.+ +.-.+..+.+..|.+. ....++..++..+|.|||+.||+
T Consensus 208 y~~ii~~KTa~L~~~~~~~~Ga~laga~~-----~~~~~l~~~G~~lG~AFQI~DDi 259 (380)
T 3lk5_A 208 ADSVNRFKTAAYTIARPLHLGASIAGGSP-----QLIDALLHYGHDIGIAFQLRDDL 259 (380)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8888888888888875 45678999999999999999985
No 37
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=7.7e-41 Score=295.76 Aligned_cols=173 Identities=19% Similarity=0.298 Sum_probs=142.7
Q ss_pred HHhhcCCCcchHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcchhHHHHHHHH
Q psy3879 19 TYISQVPGKQIRTKLAYAFNNWLNIPE--EKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGIASTINAANY 96 (247)
Q Consensus 19 ~y~~~~~GK~~R~~l~~~~~~~~~~~~--~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~~~Ai~~gd~ 96 (247)
.|.+..||||+||.|++++++..+... +++..+|+++||||+||||||||||+|++|||+||+|++||++.|||+||+
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~ 107 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDV 107 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCSHHHHHHHH
T ss_pred HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHH
Confidence 577889999999999999998544433 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhhcccccchhhhcCCCchhh
Q psy3879 97 VVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRIDDIEDNSILRRGIPVAHS 176 (247)
Q Consensus 97 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~dd~~d~~~lr~g~~t~~~ 176 (247)
|++.+|+.+++.+ +++++.+++++.+++.||.+|+.+..+. .+++++|++|+.+|||.++.-.+..+.+..|.+
T Consensus 108 L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---- 181 (315)
T 3tc1_A 108 FYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECF-NSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---- 181 (315)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC----
Confidence 9999999999986 8999999999999999999999998764 689999999999999999998888888888877
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 177 IYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 177 ~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
..++..++..+|.|||+.||+
T Consensus 182 ----~~~l~~~g~~lG~aFQI~DD~ 202 (315)
T 3tc1_A 182 ----AKIYADFGLNFGMAFQIIDDL 202 (315)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999984
No 38
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=3.1e-41 Score=304.45 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=160.4
Q ss_pred CCCcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchh
Q psy3879 7 DPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI----PEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAH 82 (247)
Q Consensus 7 ~~~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~----~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h 82 (247)
.++..+++.++++|.+ +||||+||+|++++++++++ +.+.+..+||||||||+||||||||||+|++|||+||+|
T Consensus 53 ~~~~~~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h 131 (368)
T 2q58_A 53 RKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWY 131 (368)
T ss_dssp TCCHHHHHHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHH
T ss_pred hHHHHHHHHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Confidence 4456677899999998 89999999999999999876 357889999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHhHhhhhhhhhhccCC-CCCCHHHHHHHhHHhh
Q psy3879 83 SIYGIASTINAANYVVAIALEKVQSLGH-------PEATAVYTEQLLELHRGQGMEIYWRDNY-TCPSEEEYRTMTIRKF 154 (247)
Q Consensus 83 ~~~G~~~Ai~~gd~l~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~~s~~~Y~~ii~~Kt 154 (247)
++||++.|||+||+|++.+|+++.+... .++++.+++++..++.||.+|+.|.... ..+++++|++|+.+||
T Consensus 132 ~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KT 211 (368)
T 2q58_A 132 IVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKT 211 (368)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHT
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999987532 2577889999999999999999876532 3468899999999999
Q ss_pred hhh-hcccccchhhhcCC--CchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 155 DMR-IDDIEDNSILRRGI--PVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 155 ~~~-~dd~~d~~~lr~g~--~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|.+ +.-++-.+.+..|. +. ....++...+..+|.|||+.||+
T Consensus 212 a~l~~~~~~~~g~~~ag~~~~~-----~~~~~l~~~g~~lG~aFQI~DDi 256 (368)
T 2q58_A 212 SRYTFYMPVFFGLTLSEIQVSS-----AQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp HHHHTHHHHHHHHHHSCCCCCC-----SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhCcccch-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 56666666666662 22 22345778889999999999985
No 39
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=5e-40 Score=297.03 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=165.4
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC----hH---HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchh
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP----EE---KLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAH 82 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~----~~---~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h 82 (247)
.++++.++++|.+ .||||+||.|+++++++++++ ++ .+..+|+|+||||++|||||||||+|++|||+||+|
T Consensus 62 ~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h 140 (374)
T 2qis_A 62 AIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWY 140 (374)
T ss_dssp HHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECGG
T ss_pred hHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCccHH
Confidence 4678899999987 799999999999999999874 23 577899999999999999999999999999999999
Q ss_pred hhcchh-HHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhHhhhhhhhhhccCCC----CCCHHHHHHHhHH
Q psy3879 83 SIYGIA-STINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGMEIYWRDNYT----CPSEEEYRTMTIR 152 (247)
Q Consensus 83 ~~~G~~-~Ai~~gd~l~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~----~~s~~~Y~~ii~~ 152 (247)
++||++ .||++||++++.+|.++.+. ..+++++.+++++..++.||.+|+.+..... .+++++|++|+.+
T Consensus 141 ~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~ 220 (374)
T 2qis_A 141 QKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKY 220 (374)
T ss_dssp GSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHc
Confidence 999999 99999999999999999874 2357899999999999999999999876421 3799999999999
Q ss_pred hhhhh-hcccccchhhhcC-CCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 153 KFDMR-IDDIEDNSILRRG-IPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 153 Kt~~~-~dd~~d~~~lr~g-~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|||.+ +.-.+-.+.+..| .+. ....++..++..+|.|||+.||+
T Consensus 221 KTa~Lsf~~~~~~ga~lag~a~~-----~~~~~l~~~g~~lG~aFQI~DDi 266 (374)
T 2qis_A 221 KSAFYSFYLPIAAAMYMAGIDGE-----KEHANAKKILLEMGEFFQIQDDY 266 (374)
T ss_dssp HTHHHHTHHHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9988888888888 654 44567889999999999999985
No 40
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.3e-39 Score=293.64 Aligned_cols=186 Identities=19% Similarity=0.141 Sum_probs=165.3
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC----hH---HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchh
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP----EE---KLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAH 82 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~----~~---~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h 82 (247)
.++++.++++|.+ .||||+||.|+++++++++++ .+ .+..+|+|+||||++|||||||||+|++|||+||+|
T Consensus 55 ~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h 133 (367)
T 1uby_A 55 AVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWY 133 (367)
T ss_dssp HHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGG
T ss_pred hHHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChh
Confidence 4578999999998 699999999999999999763 32 578999999999999999999999999999999999
Q ss_pred hhcchh-HHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhHhhhhhhhhhccCC----CCCCHHHHHHHhHH
Q psy3879 83 SIYGIA-STINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGMEIYWRDNY----TCPSEEEYRTMTIR 152 (247)
Q Consensus 83 ~~~G~~-~Ai~~gd~l~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~----~~~s~~~Y~~ii~~ 152 (247)
++||++ .+|+.|+++++.+|+++++. ..+++++.+++++..++.||.+|+.+.... ..+++++|++|+.+
T Consensus 134 ~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~ 213 (367)
T 1uby_A 134 KKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKY 213 (367)
T ss_dssp GSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHh
Confidence 999999 99999999999999999875 235789999999999999999999987532 15799999999999
Q ss_pred hhhhh-hcccccchhhhcC-CCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 153 KFDMR-IDDIEDNSILRRG-IPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 153 Kt~~~-~dd~~d~~~lr~g-~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
|||.+ +.-.+-.+.+..| .+. ....++..++..+|.|||+.||+
T Consensus 214 KTa~Lsf~~~~~~ga~lag~~~~-----~~~~~l~~~g~~lG~aFQI~DD~ 259 (367)
T 1uby_A 214 KTAFYSFYLPVAAAMYMVGIDSK-----EEHENAKAILLEMGEYFQIQDDY 259 (367)
T ss_dssp HTHHHHTHHHHHHHHHHHTCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHcCCccH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9988888888888 554 34567899999999999999985
No 41
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.3e-39 Score=293.65 Aligned_cols=186 Identities=14% Similarity=0.074 Sum_probs=162.6
Q ss_pred cchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC----hHH---HHH----HHHHHHHHHHHHHHhhhccCCCCCCCCC
Q psy3879 10 QDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP----EEK---LLA----IGDIIQMLHNSSLLIDDIEDNSILRRGI 78 (247)
Q Consensus 10 ~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~----~~~---~~~----~a~avElih~asLihDDI~D~s~~RRG~ 78 (247)
..+.+.++++|.+ .||||+||.|+++++++++++ ++. ++. +|+++||||+||||||||||+|++|||+
T Consensus 32 ~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~ 110 (362)
T 1yhl_A 32 RARYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGK 110 (362)
T ss_dssp HHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTE
T ss_pred HHHHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Confidence 4567889999988 799999999999999998764 332 344 7899999999999999999999999999
Q ss_pred Cchhhhcch--hHHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhHhhhhhhhhhc-----------c--CC
Q psy3879 79 PVAHSIYGI--ASTINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGMEIYWR-----------D--NY 138 (247)
Q Consensus 79 p~~h~~~G~--~~Ai~~gd~l~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~dl~~~-----------~--~~ 138 (247)
||+|++||+ +.|||+||+|++.+++++.+. ..+++++.+++++.+++.||.+|+.+. . +.
T Consensus 111 pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~ 190 (362)
T 1yhl_A 111 PCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTT 190 (362)
T ss_dssp ECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCS
T ss_pred ccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Confidence 999999999 589999999999999999986 235789999999999999999999987 3 21
Q ss_pred --CCCCHHHHHHHhHHhhhhh-hcccccchhhhcC-CCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 139 --TCPSEEEYRTMTIRKFDMR-IDDIEDNSILRRG-IPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 139 --~~~s~~~Y~~ii~~Kt~~~-~dd~~d~~~lr~g-~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
..+++++|++|+.+|||.+ +.-.+-.+.+..| .+. ....++..++..+|.|||+.||+
T Consensus 191 ~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~-----~~~~~l~~~g~~lG~aFQi~DD~ 252 (362)
T 1yhl_A 191 DFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAAS-----VEMNLVERVAHLIGEYFQVQDDV 252 (362)
T ss_dssp SCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGG-----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1479999999999999999 9998888888888 554 44678899999999999999985
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=4.7e-40 Score=295.48 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=159.1
Q ss_pred hhHHhHHHHhhcCCCcchHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcch
Q psy3879 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI----PEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 12 ~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~----~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~ 87 (247)
+++.+++.|.. .||||+||.|++++++++++ +.+.+..+|+++||||++|||||||||+|++|||+||||++||+
T Consensus 58 ~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~ 136 (368)
T 2her_A 58 EYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQ 136 (368)
T ss_dssp HHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHH
T ss_pred HHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCCh
Confidence 67778888887 99999999999999999875 35789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH---HHHHHHHHhc-C-C--hHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCH-HHHHHHhHHhhhhh-h
Q psy3879 88 ASTINAANYVV---AIALEKVQSL-G-H--PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSE-EEYRTMTIRKFDMR-I 158 (247)
Q Consensus 88 ~~Ai~~gd~l~---~~~~~~l~~~-~-~--~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~-~~Y~~ii~~Kt~~~-~ 158 (247)
..|||+||+|+ +.+|+++.+. + . .++++.+++++.+++.||.+|+.+......++. ++|++|+.+|||.+ +
T Consensus 137 ~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf 216 (368)
T 2her_A 137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTF 216 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHH
Confidence 99999999999 8888888764 2 2 378899999999999999999998763212334 99999999999999 9
Q ss_pred cccccchhhhcCCCchhhhhcH--HHHHHHHHHHHHHHHHHHhcC
Q psy3879 159 DDIEDNSILRRGIPVAHSIYGI--ASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 159 dd~~d~~~lr~g~~t~~~~~g~--~~ai~~~~~l~~~a~q~~~~l 201 (247)
.-.+..+.+..|.+. .. ..++..++..+|.|||+.||+
T Consensus 217 ~~~~~lGa~lag~~~-----~~~~~~~l~~~g~~lG~aFQI~DD~ 256 (368)
T 2her_A 217 YMPVFFGLTLSEIQV-----SSAQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp HHHHHHHHHHSCCCC-----CCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888665 33 456888899999999999975
No 43
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=5e-39 Score=291.81 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=158.5
Q ss_pred hhHHhHHHHhhcCCCcchHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhc
Q psy3879 12 EKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP------EEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY 85 (247)
Q Consensus 12 ~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~------~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~ 85 (247)
+++.++++|.+ .||||+||+|++++++++|++ .+.+..+|+||||||++|||||||||+|++|||+||||++|
T Consensus 66 ~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~ 144 (395)
T 2ihi_A 66 KYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLK 144 (395)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGST
T ss_pred HHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccC
Confidence 67788999998 999999999999999999874 25788999999999999999999999999999999999999
Q ss_pred chhH--HHHHHHHHHHHHHHHHHhc-C-C---hHHHHHHHHHHHHhHhhhhhhh-hh-----------------cc-CC-
Q psy3879 86 GIAS--TINAANYVVAIALEKVQSL-G-H---PEATAVYTEQLLELHRGQGMEI-YW-----------------RD-NY- 138 (247)
Q Consensus 86 G~~~--Ai~~gd~l~~~~~~~l~~~-~-~---~~~~~~~~~~~~~~~~Gq~~dl-~~-----------------~~-~~- 138 (247)
|.+. |||+||+|++.++.++.+. . . +++++.+++++..++.||.+|+ .| .. ..
T Consensus 145 g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (395)
T 2ihi_A 145 DVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPV 224 (395)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccccccccccccccccc
Confidence 9998 9999999999999999874 1 2 4788999999999999999999 33 11 11
Q ss_pred ---CCCCHHHHHHHhHHhhhhh-hcccccchhhhcCCCchhhhhcH--HHHHHHHHHHHHHHHHHHhcC
Q psy3879 139 ---TCPSEEEYRTMTIRKFDMR-IDDIEDNSILRRGIPVAHSIYGI--ASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 139 ---~~~s~~~Y~~ii~~Kt~~~-~dd~~d~~~lr~g~~t~~~~~g~--~~ai~~~~~l~~~a~q~~~~l 201 (247)
..+++++|++|+.+|||.+ +.-.+..+.+..|.+. .. ..++..++..+|.|||+.||+
T Consensus 225 ~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~-----~~~~~~~l~~~g~~lG~aFQI~DD~ 288 (395)
T 2ihi_A 225 IDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAV-----DNLIYKKIEDISMLMGEYFQIHDDY 288 (395)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCT-----TCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1479999999999999998 8777777777777654 33 567889999999999999984
No 44
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=5.1e-39 Score=292.70 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=151.9
Q ss_pred HHhHHHHhhcCCCcchHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhcch
Q psy3879 14 LLQPYTYISQVPGKQIRTKLAYAFNNWLNIP------EEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIYGI 87 (247)
Q Consensus 14 l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~~------~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~G~ 87 (247)
+...+.|.+ .||||+||+|++++++++++. .+++..+||||||||+||||||||||+|++|||+||+|++||+
T Consensus 68 ~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~ 146 (395)
T 3mav_A 68 YKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDV 146 (395)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTT
T ss_pred HHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccch
Confidence 444566777 799999999999999998653 3678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH--HHHHHHHHhcC-----ChHHHHHHHHHHHHhHhhhhhhhhhccCC----------------------
Q psy3879 88 ASTINAANYVV--AIALEKVQSLG-----HPEATAVYTEQLLELHRGQGMEIYWRDNY---------------------- 138 (247)
Q Consensus 88 ~~Ai~~gd~l~--~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~---------------------- 138 (247)
+.||++||+++ +.++.++.... ..++++.++++...++.||.+|+.|....
T Consensus 147 ~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 226 (395)
T 3mav_A 147 ETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVID 226 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccc
Confidence 99999999876 45666666531 24688999999999999999999764320
Q ss_pred -CCCCHHHHHHHhHHhhhhh-hcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC
Q psy3879 139 -TCPSEEEYRTMTIRKFDMR-IDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 139 -~~~s~~~Y~~ii~~Kt~~~-~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l 201 (247)
..+|+++|++|+.+|||.+ +.-.+-.+.+..|.+.- -....++..++..+|.|||+.||+
T Consensus 227 ~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d---~~~~~~l~~~g~~lG~aFQI~DDi 288 (395)
T 3mav_A 227 INMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVD---NLIYKKIEDISMLMGEYFQIHDDY 288 (395)
T ss_dssp GGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTT---CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1368999999999999998 77777777777765420 023467888999999999999984
No 45
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.3e-38 Score=287.34 Aligned_cols=187 Identities=13% Similarity=0.066 Sum_probs=158.7
Q ss_pred CcchhHHhHHHHhhcCCCcchHHHHHHHHHHhcCC-------------ChHHHHHHHH----HHHHHHHHHHHhhhccCC
Q psy3879 9 EQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNI-------------PEEKLLAIGD----IIQMLHNSSLLIDDIEDN 71 (247)
Q Consensus 9 ~~~~~l~~~~~y~~~~~GK~~R~~l~~~~~~~~~~-------------~~~~~~~~a~----avElih~asLihDDI~D~ 71 (247)
...+++.++++|.+ .||||+||+|++++++++++ +.+.+.++|+ ||||||++|||||||||+
T Consensus 53 ~~~~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~ 131 (390)
T 3dyh_A 53 NRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDN 131 (390)
T ss_dssp HHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCC
Confidence 34578999999999 99999999999999999875 2455666665 899999999999999999
Q ss_pred CCCCCCCCchhhhcchhHHHHHHHHHHHH--HHHHHHhc--CCh---HHHHHHHHHHHHhHhhhhhhhhhcc--------
Q psy3879 72 SILRRGIPVAHSIYGIASTINAANYVVAI--ALEKVQSL--GHP---EATAVYTEQLLELHRGQGMEIYWRD-------- 136 (247)
Q Consensus 72 s~~RRG~p~~h~~~G~~~Ai~~gd~l~~~--~~~~l~~~--~~~---~~~~~~~~~~~~~~~Gq~~dl~~~~-------- 136 (247)
|++|||+||||+.||++.||++||+++.. +|+++.+. +.| ++++.+++.+..++.||.+|+.+..
T Consensus 132 s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~ 211 (390)
T 3dyh_A 132 SVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPD 211 (390)
T ss_dssp CCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTT
T ss_pred CCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999864 46777764 223 6889999999999999999998821
Q ss_pred --C-----CCCCCHHHHHHHhHHhhhhh-hcccccchhhhcCCCchhhhhcH-HHHHHHHHHHHHHHHHHHhcC
Q psy3879 137 --N-----YTCPSEEEYRTMTIRKFDMR-IDDIEDNSILRRGIPVAHSIYGI-ASTINAANYVVAIALEKVQSL 201 (247)
Q Consensus 137 --~-----~~~~s~~~Y~~ii~~Kt~~~-~dd~~d~~~lr~g~~t~~~~~g~-~~ai~~~~~l~~~a~q~~~~l 201 (247)
. ...+++++|++|+.+|||.+ +.-.+..+.+..|.+. .. ..++..++..+|.|||+.||+
T Consensus 212 ~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~-----~~~~~~l~~~g~~lGlaFQI~DDi 280 (390)
T 3dyh_A 212 VSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALP-----TVDMGVTEELAMLMGEYFQVQDDV 280 (390)
T ss_dssp SCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG-----GSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12579999999999999998 8888888888888765 22 457888999999999999985
No 46
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.72 E-value=4.5e-18 Score=149.36 Aligned_cols=97 Identities=63% Similarity=1.100 Sum_probs=91.8
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+++.+++...+.+.+..+++||.+|+.|+.+
T Consensus 57 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 136 (301)
T 2q80_A 57 LHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDN 136 (301)
T ss_dssp HHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57778999999999999999999999999999999999999999999999988889999999999999999999999877
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
..++++++|++|++.||
T Consensus 137 ~~~~~~~~y~~~i~~KT 153 (301)
T 2q80_A 137 YTCPTEEEYKAMVLQKT 153 (301)
T ss_dssp TCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHccc
Confidence 65679999999999998
No 47
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.71 E-value=8e-18 Score=150.15 Aligned_cols=97 Identities=43% Similarity=0.765 Sum_probs=91.3
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHHHHHHhcc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPE-----ATAVYTEQLLELHRGQGMEI 225 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~-----~~~~~~~~~~~l~~Gq~~~i 225 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+++.++ ++..+++++..+++||.+|+
T Consensus 72 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl 151 (340)
T 2e8v_A 72 LHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDI 151 (340)
T ss_dssp HHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999999999999999999999988776 89999999999999999999
Q ss_pred ccccCC--CCCCHHHHHHHHhccC
Q psy3879 226 YWRDNY--TCPSEEEYRTMTIRSE 247 (247)
Q Consensus 226 ~~~~~~--~~~~~~~y~~~~~~KT 247 (247)
.|+.+. .++++++|++|+..||
T Consensus 152 ~~~~~~~~~~~t~~~y~~~i~~KT 175 (340)
T 2e8v_A 152 YWRDFLPEIIPTQEMYLNMVMNKT 175 (340)
T ss_dssp HHHHSTTSCCCCHHHHHHHHHHHT
T ss_pred HhhcccccCCCCHHHHHHHHHhhh
Confidence 998876 5679999999999999
No 48
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.71 E-value=8.2e-18 Score=147.50 Aligned_cols=95 Identities=19% Similarity=0.302 Sum_probs=90.8
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+++.++++..+++++..+++||.+|+.|..+
T Consensus 73 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 152 (299)
T 1v4e_A 73 VHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYK 152 (299)
T ss_dssp HHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCC
Confidence 46778999999999999999999999999999999999999999999999988999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
. +++++|++|+..||
T Consensus 153 ~--~~~~~y~~~i~~KT 167 (299)
T 1v4e_A 153 P--ITKEEYLRIVEGKS 167 (299)
T ss_dssp C--CCHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHhcc
Confidence 6 69999999999999
No 49
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=99.71 E-value=2.2e-17 Score=147.27 Aligned_cols=96 Identities=19% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+.+.++++..+++++..+++||.+|+.|..+
T Consensus 85 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 164 (341)
T 3mzv_A 85 IHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQN 164 (341)
T ss_dssp HHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 165 ~~-~t~~~y~~~i~~KT 180 (341)
T 3mzv_A 165 LA-TTEDIYLRVIRGKT 180 (341)
T ss_dssp TT-CCHHHHHHHHHHHT
T ss_pred CC-CCHHHHHHHHHcch
Confidence 55 59999999999999
No 50
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=99.71 E-value=2e-17 Score=147.53 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=82.5
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+++.++++..+++++..+++||.+|+.|..+
T Consensus 97 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 176 (345)
T 3oyr_A 97 IHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHD 176 (345)
T ss_dssp HHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 177 ~~-~~~~~y~~~i~~KT 192 (345)
T 3oyr_A 177 LN-LSQAVYLEIIQAKT 192 (345)
T ss_dssp SS-CCHHHHHHHHHHHT
T ss_pred CC-CCHHHHHHHHHcch
Confidence 65 59999999999999
No 51
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.70 E-value=1.3e-17 Score=148.99 Aligned_cols=96 Identities=28% Similarity=0.399 Sum_probs=89.5
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHhcc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGMEI 225 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l-----~~~~~~~~~~~~~~~l~~Gq~~~i 225 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.++ ..++++..+++++..+++||.+|+
T Consensus 78 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl 157 (342)
T 1wy0_A 78 IHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDL 157 (342)
T ss_dssp HHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999987 344688999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHhccC
Q psy3879 226 YWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 226 ~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.|..+..+ ++++|++|+..||
T Consensus 158 ~~~~~~~~-~~~~y~~~i~~KT 178 (342)
T 1wy0_A 158 EFEKKSTV-TIEEYMEMISGKT 178 (342)
T ss_dssp HHTTCSCC-CHHHHHHHHHHHT
T ss_pred HcccCCCC-CHHHHHHHHHHhh
Confidence 99988776 9999999999999
No 52
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.2e-17 Score=146.89 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=81.1
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+.+.+.+.++++..+++++..++.||.+|+.|..+
T Consensus 79 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~ 158 (334)
T 3rmg_A 79 LHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSN 158 (334)
T ss_dssp HHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56778999999999999999999999999999999999999999999999888999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 159 ~~-~t~~~y~~~i~~KT 174 (334)
T 3rmg_A 159 HS-FSEEVYFDVIRKKT 174 (334)
T ss_dssp ---CCHHHHHHHHHHTH
T ss_pred CC-CCHHHHHHHHcCCh
Confidence 55 59999999999998
No 53
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.70 E-value=1.9e-17 Score=146.97 Aligned_cols=96 Identities=23% Similarity=0.335 Sum_probs=91.5
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
-|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+.+.++++..+++++..+++||.+|+.|..+
T Consensus 76 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 155 (325)
T 3aqb_B 76 VHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFN 155 (325)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 57778999999999999999999999999999999999999999999999988999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 156 ~~-~~~~~y~~~i~~KT 171 (325)
T 3aqb_B 156 YP-VSFTAYLRRINRKT 171 (325)
T ss_dssp CC-CCHHHHHHHHHHHT
T ss_pred CC-CCHHHHHHHHHhhH
Confidence 65 59999999999999
No 54
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.69 E-value=1.9e-17 Score=146.15 Aligned_cols=95 Identities=16% Similarity=0.357 Sum_probs=74.1
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+++ +++...+++++..++.||.+|+.|..+
T Consensus 69 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 147 (315)
T 3tc1_A 69 IQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGEC 147 (315)
T ss_dssp HHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5677899999999999999999999999999999999999999999999987 889999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 148 ~~-~~~~~y~~~i~~KT 163 (315)
T 3tc1_A 148 FN-SDKQKYWRILEDKT 163 (315)
T ss_dssp CC-CCHHHHHHHHHHHT
T ss_pred CC-CCHHHHHHHHhcch
Confidence 55 59999999999999
No 55
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.69 E-value=2.3e-17 Score=147.57 Aligned_cols=96 Identities=26% Similarity=0.264 Sum_probs=90.3
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHHHhcccc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP---EATAVYTEQLLELHRGQGMEIYW 227 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~---~~~~~~~~~~~~l~~Gq~~~i~~ 227 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+++.+ +++..+++++..+++||.+|+.|
T Consensus 86 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~ 165 (352)
T 3nf2_A 86 VHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISY 165 (352)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466788999999999999999999999999999999999999999999999887 68899999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHhccC
Q psy3879 228 RDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 228 ~~~~~~~~~~~y~~~~~~KT 247 (247)
..+.. +++++|++|+.+||
T Consensus 166 ~~~~~-~t~~~y~~~i~~KT 184 (352)
T 3nf2_A 166 EHRDR-VSVEECLEMEGNKT 184 (352)
T ss_dssp TTCSC-CCHHHHHHHHHHHT
T ss_pred ccCCC-CCHHHHHHHHHccc
Confidence 98754 69999999999999
No 56
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.69 E-value=3.5e-17 Score=142.37 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=91.0
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccc
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWR 228 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~ 228 (247)
.|..+++|||+ +|.+++|||+||+|..||...|++.||+++..||+++.+.+.++++..+++++..+++||.+|+.|+
T Consensus 78 iH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~ 157 (284)
T 2ftz_A 78 FHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFE 157 (284)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhc
Confidence 56778999999 9999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhccC
Q psy3879 229 DNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 229 ~~~~~~~~~~y~~~~~~KT 247 (247)
.+..++++++|++|++.||
T Consensus 158 ~~~~~~~~~~y~~i~~~KT 176 (284)
T 2ftz_A 158 RRXMEVSQEMVERMYAFXT 176 (284)
T ss_dssp HSCCCCCHHHHHHHHHHHT
T ss_pred cCcCCCCHHHHHHHHHhhh
Confidence 8763469999999999999
No 57
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.68 E-value=1.8e-17 Score=147.32 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=88.9
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHhcc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH-----PEATAVYTEQLLELHRGQGMEI 225 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~-----~~~~~~~~~~~~~l~~Gq~~~i 225 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++.+++. ++++..+++++..+++||.+|+
T Consensus 71 iH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl 150 (330)
T 1wmw_A 71 FQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDL 150 (330)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778999999999999999999999999999999999999999999987533 6899999999999999999999
Q ss_pred cc-ccCCCCCCHHHHHHHHhccC
Q psy3879 226 YW-RDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 226 ~~-~~~~~~~~~~~y~~~~~~KT 247 (247)
.| +.+..++++++|++|+..||
T Consensus 151 ~~~~~~~~~~~~~~y~~~i~~KT 173 (330)
T 1wmw_A 151 LWTLGGTFDLRPEDYFRMVAHKA 173 (330)
T ss_dssp HHHHSSSCCCCHHHHHHHHHHHT
T ss_pred HhcccCCCCCCHHHHHHHHHccc
Confidence 99 87633469999999999999
No 58
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.67 E-value=3.5e-17 Score=146.49 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=74.5
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++..++.++++..+++++..+++||.+|+.|..+
T Consensus 99 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 178 (348)
T 3apz_A 99 IHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTE 178 (348)
T ss_dssp HHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56778899999999999999999999999999999999999999999999988999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
.. +++++|++|+..||
T Consensus 179 ~~-~~~~~y~~~i~~KT 194 (348)
T 3apz_A 179 QR-YSMDYYMQKTYYKT 194 (348)
T ss_dssp HH-TCHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHcch
Confidence 44 49999999999998
No 59
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.67 E-value=6.2e-17 Score=143.97 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHhcccccc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH-PEATAVYTEQLLELHRGQGMEIYWRD 229 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~-~~~~~~~~~~~~~l~~Gq~~~i~~~~ 229 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+.+. ++++..+++++..+++||..|+.+..
T Consensus 88 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~ 167 (334)
T 3pko_A 88 LHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNY 167 (334)
T ss_dssp HHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57778999999999999999999999999999999999999999999998765 88999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHhccC
Q psy3879 230 NYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 230 ~~~~~~~~~y~~~~~~KT 247 (247)
+.. +++++|++|+..||
T Consensus 168 ~~~-~~~~~yl~~i~~KT 184 (334)
T 3pko_A 168 RED-ITLDAYLNEIAGKT 184 (334)
T ss_dssp CTT-CCHHHHHHHHHHTT
T ss_pred CCC-CCHHHHHHHHHcch
Confidence 655 59999999999999
No 60
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=99.67 E-value=5.2e-17 Score=145.52 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=78.1
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+++ ++++..+++++..++.||.+|+.|..+
T Consensus 107 iH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~ 185 (360)
T 3lmd_A 107 THLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRD 185 (360)
T ss_dssp HHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5677899999999999999999999999999999999999999999999886 589999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
. +++++|++|+..||
T Consensus 186 ~--~t~~~y~~~i~~KT 200 (360)
T 3lmd_A 186 T--DPIEHYTNVIREKT 200 (360)
T ss_dssp S--CHHHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHhhh
Confidence 6 69999999999998
No 61
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.66 E-value=1.1e-16 Score=143.63 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=88.4
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHhccccc-
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH-PEATAVYTEQLLELHRGQGMEIYWR- 228 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~-~~~~~~~~~~~~~l~~Gq~~~i~~~- 228 (247)
.|..+++|||++|.+++|||+||+|.+||...||+.||+++..||+++.+.+. .+++..+++++..+++||.+|+.|.
T Consensus 77 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~ 156 (358)
T 4dhd_A 77 IHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEA 156 (358)
T ss_dssp HHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 46778999999999999999999999999999999999999999999976654 5789999999999999999999998
Q ss_pred ----------cCCCCCCHHHHHHHHhccC
Q psy3879 229 ----------DNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 229 ----------~~~~~~~~~~y~~~~~~KT 247 (247)
.+..++++++|++|+..||
T Consensus 157 ~~~~dp~~~~~~~~~~t~~~y~~~i~~KT 185 (358)
T 4dhd_A 157 AGRSDPYFVQARWREVTLDDYIKMVSLKT 185 (358)
T ss_dssp SCCCCHHHHHTCCSCCCHHHHHHHHHHHT
T ss_pred cccccccccccCCCCCCHHHHHHHHHcch
Confidence 4443569999999999999
No 62
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.65 E-value=8.4e-17 Score=140.69 Aligned_cols=94 Identities=16% Similarity=0.375 Sum_probs=82.4
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
-|..+++|||++|.+++|||+||+|.+||...||++||+++..||+++...+ ++++..+++++..++.||.+|+.|..+
T Consensus 74 iH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~ 152 (295)
T 3ipi_A 74 MHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLEDE 152 (295)
T ss_dssp HHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHccCC
Confidence 4667899999999999999999999999999999999999999999999874 688999999999999999999999876
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
. +++++|++|++.||
T Consensus 153 ~--~t~~~y~~~i~~KT 167 (295)
T 3ipi_A 153 S--FGENDYFKCIYKKT 167 (295)
T ss_dssp -----CHHHHHHHHHHT
T ss_pred C--CCHHHHHHHHHhhh
Confidence 3 59999999999998
No 63
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.63 E-value=2.3e-16 Score=138.41 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=85.4
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC-C-----ChHHHHHHHHHH--HHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL-G-----HPEATAVYTEQL--LELHRG 220 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l-~-----~~~~~~~~~~~~--~~l~~G 220 (247)
.|..+++|||+ +|.+++|||+||+|..||...||++||+++..||+++.+. + ..+++..+++++ ..+++|
T Consensus 74 iH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~G 153 (301)
T 1rtr_A 74 IHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGG 153 (301)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHH
Confidence 46678999999 9999999999999999999999999999999999999987 2 224677788887 889999
Q ss_pred HHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 221 QGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 221 q~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
|.+|+.|..+ ++++++|++|++.||
T Consensus 154 Q~~Dl~~~~~--~~~~~~y~~i~~~KT 178 (301)
T 1rtr_A 154 QMLDMQSEGQ--PIDLETLEMIHKTKT 178 (301)
T ss_dssp HHHHHHTTTS--CCCHHHHHHHHHHHT
T ss_pred HHHHHHccCC--CCCHHHHHHHHHhch
Confidence 9999999876 569999999999999
No 64
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.63 E-value=2.9e-16 Score=137.45 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=86.8
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCC--Ch----HHHHHHHHHH--HHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG--HP----EATAVYTEQL--LELHRG 220 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~--~~----~~~~~~~~~~--~~l~~G 220 (247)
-|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+ .+ +++..+++++ ..++.|
T Consensus 73 iH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~G 152 (297)
T 3m0g_A 73 LHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYG 152 (297)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHh
Confidence 56778999998 99999999999999999999999999999999999998864 22 4677888888 889999
Q ss_pred HHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 221 QGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 221 q~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
|.+|+.|+.+..++++++|++|+..||
T Consensus 153 Q~lDl~~~~~~~~~~~~~y~~i~~~KT 179 (297)
T 3m0g_A 153 QALDIAAETAAVPLTLDEIIRLQAGKT 179 (297)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHccch
Confidence 999999995444679999999999999
No 65
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.62 E-value=2.8e-16 Score=141.46 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhh-------c--cCCCCCCHHHHHHH-----hHHhhhhhhcccccchhhhcCCCchhhh
Q psy3879 112 EATAVYTEQLLELHRGQGMEIYW-------R--DNYTCPSEEEYRTM-----TIRKFDMRIDDIEDNSILRRGIPVAHSI 177 (247)
Q Consensus 112 ~~~~~~~~~~~~~~~Gq~~dl~~-------~--~~~~~~s~~~Y~~i-----i~~Kt~~~~dd~~d~~~lr~g~~t~~~~ 177 (247)
.+++.+.+++...+.|. ..+.. + ......+.+....+ ..|..+++|||++|.+++|||+||+|.+
T Consensus 55 ~~~~~~~~~l~Y~~~GG-KrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~ 133 (368)
T 2q58_A 55 PVIEYYLNCIDYNVKKG-KHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIV 133 (368)
T ss_dssp CHHHHHHHHHHHHTTCS-TTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHH
T ss_pred HHHHHHHHHHhcCCCCc-cchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccC
Confidence 46777777776555542 11110 0 01112355554433 2678899999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHHHHHHhccccccCCC-CCCHHHHHHHHhccC
Q psy3879 178 YGIASTINAANYVVAIALEKVQSLGH-------PEATAVYTEQLLELHRGQGMEIYWRDNYT-CPSEEEYRTMTIRSE 247 (247)
Q Consensus 178 ~g~~~ai~~~~~l~~~a~q~~~~l~~-------~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~-~~~~~~y~~~~~~KT 247 (247)
||...||+.||+++..||+++.++.. .++...+++++..+++||.+|+.|..... .+++++|++|+..||
T Consensus 134 ~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KT 211 (368)
T 2q58_A 134 HGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKT 211 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHh
Confidence 99999999999999999999987633 25788899999999999999999886543 348999999999998
No 66
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.62 E-value=5e-16 Score=136.44 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=85.5
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHH--HHHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQL--LELHRGQ 221 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~-----~~~~~~~~~~--~~l~~Gq 221 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||+.||+++..||+++.+.+.+ +++..+++++ ..++.||
T Consensus 82 iH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ 161 (309)
T 3pde_A 82 LHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQ 161 (309)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhH
Confidence 46778999999 9999999999999999999999999999999999999987643 4677777776 6899999
Q ss_pred HhccccccCCCCCCHHHHHHHHhccC
Q psy3879 222 GMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 222 ~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.+|+.|... ++++++|++|++.||
T Consensus 162 ~lDl~~~~~--~~t~~~y~~i~~~KT 185 (309)
T 3pde_A 162 AKDIQSEHV--NLPLSQLRVLHKEKT 185 (309)
T ss_dssp HHHHHTTTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHccCC--CCCHHHHHHHHHhcc
Confidence 999999875 469999999999999
No 67
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.62 E-value=3.1e-16 Score=139.33 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=85.9
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC--CC-----hHHHHHHHHHH--HHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL--GH-----PEATAVYTEQL--LELHR 219 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l--~~-----~~~~~~~~~~~--~~l~~ 219 (247)
.|..+++|||+ +|.+++|||+||+|..||...||+.||+++..||+++.+. +. .+++..+++++ ..+++
T Consensus 117 iH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~ 196 (335)
T 2h8o_A 117 LHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG 196 (335)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHH
Confidence 47778999999 9999999999999999999999999999999999999987 22 24677788887 88999
Q ss_pred HHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 220 GQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 220 Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
||.+|+.|..+ .+++++|++|+..||
T Consensus 197 GQ~lDl~~~~~--~~~~~~y~~i~~~KT 222 (335)
T 2h8o_A 197 GQALDLAAEKK--APDEDGIITLQAMKT 222 (335)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHccCC--CCCHHHHHHHHHhch
Confidence 99999999887 469999999999999
No 68
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.61 E-value=6.6e-16 Score=135.38 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=85.2
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHH--HHHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQL--LELHRGQ 221 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~-----~~~~~~~~~~--~~l~~Gq 221 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||+.||+++..||+++.+.+.+ +++..+++++ ..++.||
T Consensus 83 iH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ 162 (302)
T 3p8l_A 83 IHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQ 162 (302)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHH
Confidence 47778999999 9999999999999999999999999999999999999986543 3567777776 6899999
Q ss_pred HhccccccCCCCCCHHHHHHHHhccC
Q psy3879 222 GMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 222 ~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.+|+.|... ++++++|++|+..||
T Consensus 163 ~lDl~~~~~--~~t~~~y~~i~~~KT 186 (302)
T 3p8l_A 163 MGDIEGEKV--SLTLEELAAVHEKKT 186 (302)
T ss_dssp HHHHHTTTS--CCCHHHHHHHHHHHT
T ss_pred HHHHHccCC--CCCHHHHHHHHHcCc
Confidence 999999875 569999999999998
No 69
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.61 E-value=5.4e-16 Score=136.02 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=84.2
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC---CC-h----HHHHHHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL---GH-P----EATAVYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l---~~-~----~~~~~~~~~~--~~l~ 218 (247)
.|..+++|||+ +|.+++|||+||+|..||...||+.||+++..||+++.+. +. + +++..+++++ ..++
T Consensus 76 iH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 155 (299)
T 1rqj_A 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMC 155 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHH
Confidence 57778999999 9999999999999999999999999999999999999885 21 1 3566677765 7899
Q ss_pred HHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.||.+|+.|..+ ++++++|++|++.||
T Consensus 156 ~GQ~~dl~~~~~--~~~~~~y~~i~~~KT 182 (299)
T 1rqj_A 156 GGQALDLDAEGK--HVPLDALERIHRHKT 182 (299)
T ss_dssp HHHHHHHHTTTT--CCCHHHHHHHHHHHT
T ss_pred HhHHHHHhccCC--CCCHHHHHHHHHhhh
Confidence 999999999876 569999999999999
No 70
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.60 E-value=8.5e-16 Score=135.79 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=85.0
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCC--C--h----HHHHHHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG--H--P----EATAVYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~--~--~----~~~~~~~~~~--~~l~ 218 (247)
-|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+ . + +++..+++++ ..++
T Consensus 82 iH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~ 161 (324)
T 3ts7_A 82 IHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMV 161 (324)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 46778999999 99999999999999999999999999999999999999874 2 2 4677777775 7899
Q ss_pred HHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.||.+|+.|..+ ++++++|++|+..||
T Consensus 162 ~GQ~lDl~~~~~--~~t~~~y~~i~~~KT 188 (324)
T 3ts7_A 162 GGQAIDLASVGK--KLDLPGLENMHIRKT 188 (324)
T ss_dssp HHHHHHHHTTTC--CCCHHHHHHHHHHHT
T ss_pred HhHHHHHHccCC--CCCHHHHHHHHHhhH
Confidence 999999999986 569999999999999
No 71
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.60 E-value=5.9e-16 Score=139.23 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=87.1
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcH--HHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHh
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGI--ASTINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGM 223 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~--~~ai~~~~~l~~~a~q~~~~l-----~~~~~~~~~~~~~~~l~~Gq~~ 223 (247)
.|..+++|||++|.+++|||+||+|..||. ..|++.|++++..||+++.++ ..++++..+++++..+++||.+
T Consensus 90 iH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 169 (362)
T 1yhl_A 90 LQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMY 169 (362)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 577789999999999999999999999999 589999999999999999875 2357899999999999999999
Q ss_pred ccccc-----------c--CC--CCCCHHHHHHHHhccC
Q psy3879 224 EIYWR-----------D--NY--TCPSEEEYRTMTIRSE 247 (247)
Q Consensus 224 ~i~~~-----------~--~~--~~~~~~~y~~~~~~KT 247 (247)
|+.|. . +. .++++++|++|+..||
T Consensus 170 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KT 208 (362)
T 1yhl_A 170 DVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKT 208 (362)
T ss_dssp HHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHT
T ss_pred HHHccccccccccccccccccccccCCHHHHHHHHHhcC
Confidence 99998 3 32 1579999999999999
No 72
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.60 E-value=9.7e-16 Score=133.65 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=85.3
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHH--HHHHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP-----EATAVYTEQ--LLELHRGQ 221 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~-----~~~~~~~~~--~~~l~~Gq 221 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+.+ +++..++++ +..++.||
T Consensus 72 iH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ 151 (291)
T 3npk_A 72 IHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQ 151 (291)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46778999999 9999999999999999999999999999999999999876432 367778888 88999999
Q ss_pred HhccccccCCCCCCHHHHHHHHhccC
Q psy3879 222 GMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 222 ~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.+|+.|+.. ++++++|++|++.||
T Consensus 152 ~lDl~~~~~--~~~~~~y~~i~~~KT 175 (291)
T 3npk_A 152 AIDCFFEDK--RLSLNELEFLHTHKT 175 (291)
T ss_dssp HHHHHTTTS--CCCHHHHHHHHHHHT
T ss_pred HHHHhccCC--CCCHHHHHHHHHccc
Confidence 999999864 469999999999999
No 73
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.59 E-value=1.2e-15 Score=137.72 Aligned_cols=96 Identities=25% Similarity=0.329 Sum_probs=73.6
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhh----------------hcHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHH
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSI----------------YGIASTINAANYVVAIALEKVQSLGHP-----EATAV 209 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~----------------~g~~~ai~~~~~l~~~a~q~~~~l~~~-----~~~~~ 209 (247)
.|..+++|||++|.+++|||+||+|.. ||...||+.||+++..||+++.+.+.+ .+...
T Consensus 100 iH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~ 179 (380)
T 3lk5_A 100 IQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDA 179 (380)
T ss_dssp HHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 577789999999999999999999997 599999999999999999999987643 35667
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 210 YTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 210 ~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
++.....++.||.+|+.|..+.. +++++|++|+..||
T Consensus 180 ~~~~~~~~~~GQ~lDl~~~~~~~-~s~~~y~~ii~~KT 216 (380)
T 3lk5_A 180 WRGMRTEVIGGQLLDIYLESHAN-ESVELADSVNRFKT 216 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHhhc
Confidence 77777899999999999998765 59999999999999
No 74
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.59 E-value=1.5e-15 Score=131.59 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=81.2
Q ss_pred HHhhhhhhcccc-cchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCCh-------HHHHHH---HHHH--HHH
Q psy3879 151 IRKFDMRIDDIE-DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHP-------EATAVY---TEQL--LEL 217 (247)
Q Consensus 151 ~~Kt~~~~dd~~-d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~-------~~~~~~---~~~~--~~l 217 (247)
.|..+++|||+. |.++.|||+||+|.+||...||+.||+++..||+++.+.+.+ .+...+ ++++ ..+
T Consensus 72 iH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~ 151 (274)
T 3kra_B 72 VHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGM 151 (274)
T ss_dssp HHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTH
T ss_pred HHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHH
Confidence 467789999997 666789999999999999999999999999999999987653 234443 4444 678
Q ss_pred HHHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 218 HRGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 218 ~~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
+.||.+|+.|..+ ++++++|++|+++||
T Consensus 152 ~~GQ~lDl~~~~~--~~t~~~y~~~i~~KT 179 (274)
T 3kra_B 152 ISGLHREEEIVDG--NTSLDFIEYVCKKKY 179 (274)
T ss_dssp HHHHHHHTTCCTT--SSCHHHHHHHHHHHT
T ss_pred HHhHHHHHhccCC--CCCHHHHHHHHHHHH
Confidence 9999999999986 469999999999999
No 75
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.58 E-value=1.5e-15 Score=133.23 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=84.4
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCC----Ch----HHHHHHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG----HP----EATAVYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~----~~----~~~~~~~~~~--~~l~ 218 (247)
-|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+ .+ +++..+++++ ..++
T Consensus 76 iH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 155 (304)
T 3lsn_A 76 IHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMV 155 (304)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHh
Confidence 46778999999 99999999999999999999999999999999999999874 23 3667777776 4599
Q ss_pred HHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.||.+|+.|..+ .+++++|++|+..||
T Consensus 156 ~GQ~lDl~~~~~--~~s~~~y~~i~~~KT 182 (304)
T 3lsn_A 156 GGQAIDLGSVGL--KLDQQALEYMHRHKT 182 (304)
T ss_dssp HHHHHHHHTTTC--CCCHHHHHHHHHHHT
T ss_pred HhHHHHHHccCC--CCCHHHHHHHHHhhh
Confidence 999999999976 369999999999999
No 76
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.58 E-value=1.1e-15 Score=133.31 Aligned_cols=88 Identities=24% Similarity=0.305 Sum_probs=82.0
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHhcccccc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKV-QSLGHPEATAVYTEQLLELHRGQGMEIYWRD 229 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~-~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~ 229 (247)
-|..+++|||++|.+++|||+||+|..||...||+.||+++..||+++ .+.+ ++++..+++++..+++||.+|+.+
T Consensus 81 iH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-- 157 (289)
T 2azj_A 81 LHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-- 157 (289)
T ss_dssp HHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 467789999999999999999999999999999999999999999999 8875 578999999999999999999986
Q ss_pred CCCCCCHHHHHHHHhccC
Q psy3879 230 NYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 230 ~~~~~~~~~y~~~~~~KT 247 (247)
+++|++|+..||
T Consensus 158 ------~~~y~~~i~~KT 169 (289)
T 2azj_A 158 ------NSDYIRTIELKT 169 (289)
T ss_dssp ------TSCHHHHHHHHT
T ss_pred ------HHHHHHHHHcch
Confidence 468999999998
No 77
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.4e-15 Score=134.02 Aligned_cols=96 Identities=24% Similarity=0.321 Sum_probs=84.3
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcC--CC-h-----HHHHHHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSL--GH-P-----EATAVYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l--~~-~-----~~~~~~~~~~--~~l~ 218 (247)
-|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+. +. + +++..+++++ ..++
T Consensus 82 iH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~ 161 (313)
T 3lom_A 82 THCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMV 161 (313)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHH
Confidence 47778999999 9999999999999999999999999999999999999875 22 1 3566677775 6899
Q ss_pred HHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.||.+|+.|..+. ++++++|++|++.||
T Consensus 162 ~GQ~lDl~~~~~~-~~t~~~y~~i~~~KT 189 (313)
T 3lom_A 162 SGQSLDLSELAKS-SVTEEQLREIHLLKT 189 (313)
T ss_dssp HHHHHHHHTTTSS-CCCHHHHHHHHHHHT
T ss_pred HhHHHHHHccCCC-CCCHHHHHHHHHcCc
Confidence 9999999999765 469999999999999
No 78
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.58 E-value=1.5e-15 Score=133.54 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=84.0
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhc--CCCh---HHHHHHHHH--HHHHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQS--LGHP---EATAVYTEQ--LLELHRGQ 221 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~--l~~~---~~~~~~~~~--~~~l~~Gq 221 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+ ++.+ +++..++++ +..++.||
T Consensus 86 iH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ 165 (311)
T 3llw_A 86 LHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQ 165 (311)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46778999999 999999999999999999999999999999999999988 4333 366777777 57999999
Q ss_pred HhccccccCCCCCCHHHHHHHHhccC
Q psy3879 222 GMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 222 ~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.+|+.|.. .++++++|++|+..||
T Consensus 166 ~lDl~~~~--~~~t~~~y~~i~~~KT 189 (311)
T 3llw_A 166 ALDCYFEN--TPLNLEQLTFLHEHKT 189 (311)
T ss_dssp HHHHHTTT--SCCCHHHHHHHHHHHT
T ss_pred HHHHHhcC--CCCCHHHHHHHHHHhH
Confidence 99999984 3469999999999999
No 79
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.58 E-value=1.4e-15 Score=133.35 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=70.1
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC----h----HHHHHHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH----P----EATAVYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~----~----~~~~~~~~~~--~~l~ 218 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||+.||+++..||+++.+.+. + +++..+++++ ..++
T Consensus 82 iH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~ 161 (302)
T 3p8r_A 82 IHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMC 161 (302)
T ss_dssp HHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHH
Confidence 46778999999 999999999999999999999999999999999999998742 1 3566777775 6899
Q ss_pred HHHHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
.||.+|+.|+.. ++++++|++|+.+||
T Consensus 162 ~GQ~lDl~~~~~--~~s~~~y~~i~~~KT 188 (302)
T 3p8r_A 162 LGQALDLAAENR--LISLEELETIHRNKT 188 (302)
T ss_dssp HHHHHHHHTTTS--CCCHHHHHHHHHHHT
T ss_pred HhHHHHHHccCC--CCCHHHHHHHhccCc
Confidence 999999999853 579999999999999
No 80
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.57 E-value=3.6e-15 Score=131.42 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=76.7
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC--h----HHHHHHHHHH--HHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH--P----EATAVYTEQL--LELHRG 220 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~--~----~~~~~~~~~~--~~l~~G 220 (247)
-|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+. + +++..+++++ ..++.|
T Consensus 77 iH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~G 156 (317)
T 4f62_A 77 IHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITG 156 (317)
T ss_dssp HHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHh
Confidence 46778999999 999999999999999999999999999999999999998732 2 3566677765 479999
Q ss_pred HHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 221 QGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 221 q~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
|.+|+.|... .+++++|++|+..||
T Consensus 157 Q~lDl~~~~~--~~t~~~y~~i~~~KT 181 (317)
T 4f62_A 157 QMIDLSSENK--NISLAELEQMHVHKT 181 (317)
T ss_dssp HHHHHHTSSS--CCCHHHHHHHHHHHT
T ss_pred HHHHHhccCC--CCCHHHHHHHHHhch
Confidence 9999999864 369999999999999
No 81
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.57 E-value=1.5e-15 Score=134.17 Aligned_cols=96 Identities=25% Similarity=0.345 Sum_probs=84.7
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHH--HHHHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH------PEATAVYTEQL--LELHRG 220 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~------~~~~~~~~~~~--~~l~~G 220 (247)
.|..+++|||+ +|.+++|||+||+|.+||...||++||+++..||+++.+.+. .+++..++++. ..++.|
T Consensus 106 iH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~G 185 (324)
T 3uca_A 106 IHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGG 185 (324)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHh
Confidence 46778999999 999999999999999999999999999999999999987532 24566777765 689999
Q ss_pred HHhccccccCCCCCCHHHHHHHHhccC
Q psy3879 221 QGMEIYWRDNYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 221 q~~~i~~~~~~~~~~~~~y~~~~~~KT 247 (247)
|.+|+.|..+.. +++++|++|+++||
T Consensus 186 Q~lDl~~~~~~~-~t~~~y~~i~~~KT 211 (324)
T 3uca_A 186 QIVDIINEDKEE-ISLKELDYMHLKKT 211 (324)
T ss_dssp HHHHHHTSSCSS-CCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCC-CCHHHHHHHHhcch
Confidence 999999998754 59999999999998
No 82
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.54 E-value=2.6e-15 Score=135.44 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=87.3
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHH-HHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHhc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGME 224 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~-~ai~~~~~l~~~a~q~~~~l-----~~~~~~~~~~~~~~~l~~Gq~~~ 224 (247)
.|..+++|||++|.+++|||+||+|..||.. .|++.|++++..||+++.+. ...+++..+++.+..++.||.+|
T Consensus 116 iH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lD 195 (374)
T 2qis_A 116 LQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLD 195 (374)
T ss_dssp HHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999 99999999999999999864 23578999999999999999999
Q ss_pred cccccCCC----CCCHHHHHHHHhccC
Q psy3879 225 IYWRDNYT----CPSEEEYRTMTIRSE 247 (247)
Q Consensus 225 i~~~~~~~----~~~~~~y~~~~~~KT 247 (247)
+.|..+.. ++++++|++|+..||
T Consensus 196 l~~~~~~~~d~~~~t~~~y~~i~~~KT 222 (374)
T 2qis_A 196 LLTAPQGNVDLVRFTEKRYKSIVKYKS 222 (374)
T ss_dssp HHHSCTTCCCGGGCCHHHHHHHHHHHT
T ss_pred HHcccccccccccCCHHHHHHHHHcCc
Confidence 99987522 469999999999999
No 83
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.54 E-value=2.6e-15 Score=134.75 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=85.4
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHH---HHHHHHHhcC-C-C--hHHHHHHHHHHHHHHHHHHh
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVV---AIALEKVQSL-G-H--PEATAVYTEQLLELHRGQGM 223 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~---~~a~q~~~~l-~-~--~~~~~~~~~~~~~l~~Gq~~ 223 (247)
.|..+++|||++|.+++|||+||+|..||...||+.||+++ ..||+++.+. + . .+++..+++++..+++||.+
T Consensus 107 lH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 186 (368)
T 2her_A 107 IQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHL 186 (368)
T ss_dssp HHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 57778999999999999999999999999999999999999 9999988764 3 2 36889999999999999999
Q ss_pred ccccccCC-CCCCH-HHHHHHHhccC
Q psy3879 224 EIYWRDNY-TCPSE-EEYRTMTIRSE 247 (247)
Q Consensus 224 ~i~~~~~~-~~~~~-~~y~~~~~~KT 247 (247)
|+.|..+. .+ +. ++|++|+..||
T Consensus 187 Dl~~~~~~~~~-~~~~~y~~ii~~KT 211 (368)
T 2her_A 187 DLSYFDLSKAD-KISERYFSMVEMKT 211 (368)
T ss_dssp HHCSCCCSSCS-SHHHHHHHHHHHHT
T ss_pred HHHhcccCCCC-ChHHHHHHHHHccc
Confidence 99998754 33 44 99999999999
No 84
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.53 E-value=3.8e-15 Score=134.06 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=87.0
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHH-HHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHhc
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIA-STINAANYVVAIALEKVQSL-----GHPEATAVYTEQLLELHRGQGME 224 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~-~ai~~~~~l~~~a~q~~~~l-----~~~~~~~~~~~~~~~l~~Gq~~~ 224 (247)
.|..+++|||++|.+++|||+||+|..||.. .+++.++++++.||+++.+. ...+++..+++.+..++.||.+|
T Consensus 109 iH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lD 188 (367)
T 1uby_A 109 FQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLD 188 (367)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999 89999999999999999875 23578999999999999999999
Q ss_pred cccccCC----CCCCHHHHHHHHhccC
Q psy3879 225 IYWRDNY----TCPSEEEYRTMTIRSE 247 (247)
Q Consensus 225 i~~~~~~----~~~~~~~y~~~~~~KT 247 (247)
+.|..+. .++++++|++|+.+||
T Consensus 189 l~~~~~~~~d~~~~t~~~y~~ii~~KT 215 (367)
T 1uby_A 189 LITAPVSKVDLSHFSEERYKAIVKYKT 215 (367)
T ss_dssp HHHSCTTSCCCTTCCHHHHHHHHHHHT
T ss_pred HhcccccccccccCCHHHHHHHHHhCc
Confidence 9998643 2569999999999999
No 85
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.53 E-value=3.7e-15 Score=135.43 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=83.3
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHH--HHHHHHHhcC--C---ChHHHHHHHHHHHHHHHHHHh
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVV--AIALEKVQSL--G---HPEATAVYTEQLLELHRGQGM 223 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~--~~a~q~~~~l--~---~~~~~~~~~~~~~~l~~Gq~~ 223 (247)
.|..+++|||++|.+++|||+||+|.+||...|+.+||+++ +.+|+++... + ..+++..++++...+|+||.+
T Consensus 117 iH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 196 (395)
T 3mav_A 117 LQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHL 196 (395)
T ss_dssp HHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999876 5678887653 1 236889999999999999999
Q ss_pred ccccccC-----------------------CCCCCHHHHHHHHhccC
Q psy3879 224 EIYWRDN-----------------------YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 224 ~i~~~~~-----------------------~~~~~~~~y~~~~~~KT 247 (247)
|+.|..+ ...+|+++|++|++.||
T Consensus 197 Dl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KT 243 (395)
T 3mav_A 197 DTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKT 243 (395)
T ss_dssp HHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHT
T ss_pred HHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhh
Confidence 9987653 12358999999999999
No 86
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.51 E-value=6.9e-15 Score=128.58 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=78.6
Q ss_pred HHhhhhhhccc--ccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHH---HHHHHH--HHHH
Q psy3879 151 IRKFDMRIDDI--EDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLG-----HPEATA---VYTEQL--LELH 218 (247)
Q Consensus 151 ~~Kt~~~~dd~--~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~-----~~~~~~---~~~~~~--~~l~ 218 (247)
.|..+++|||+ +|.+++|||+||+|..||...||+.||+++..||+++.+.+ .+.... .+++++ ..++
T Consensus 84 iH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 163 (293)
T 2j1p_A 84 IHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLV 163 (293)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHH
Confidence 57778999997 99999999999999999999999999999999999998753 223444 444443 5799
Q ss_pred HHHHhccccccCC-CCCCHHHHHHHHhccC
Q psy3879 219 RGQGMEIYWRDNY-TCPSEEEYRTMTIRSE 247 (247)
Q Consensus 219 ~Gq~~~i~~~~~~-~~~~~~~y~~~~~~KT 247 (247)
+||.+|+.|+.+. ..+++++|++|++.||
T Consensus 164 ~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KT 193 (293)
T 2j1p_A 164 AGQVVDISSEGLDLNNVGLEHLKFIHLHKT 193 (293)
T ss_dssp HHHHHTTC---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHccc
Confidence 9999999998751 2358999999999998
No 87
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.50 E-value=1.3e-14 Score=125.82 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=79.8
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccC
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDN 230 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~ 230 (247)
.|..+++|||++|.+++|||+|++|.+||...||+.||+++..||+++.+++. +++..+++++..++.||.+|+.|..+
T Consensus 80 iH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~ 158 (285)
T 4fp4_A 80 LHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERD 158 (285)
T ss_dssp HHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhcccc
Confidence 47778999999999999999999999999999999999999999999999864 89999999999999999999999874
Q ss_pred CCCCCHHHHHHHHhccC
Q psy3879 231 YTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 231 ~~~~~~~~y~~~~~~KT 247 (247)
. |+..||
T Consensus 159 ~----------~i~~KT 165 (285)
T 4fp4_A 159 K----------AAEFKT 165 (285)
T ss_dssp H----------HHHHHT
T ss_pred c----------hhhcCc
Confidence 1 888888
No 88
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.46 E-value=2.9e-14 Score=129.24 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=84.2
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHH--HHHHHHHHHHHHHHHHhcC--CC---hHHHHHHHHHHHHHHHHHHh
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIAS--TINAANYVVAIALEKVQSL--GH---PEATAVYTEQLLELHRGQGM 223 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~--ai~~~~~l~~~a~q~~~~l--~~---~~~~~~~~~~~~~l~~Gq~~ 223 (247)
.|..+++|||++|.+++|||+|++|..||... |++.|+++++.||+++.+. +. .+++..+++++..++.||.+
T Consensus 117 iH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 196 (395)
T 2ihi_A 117 LQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHL 196 (395)
T ss_dssp HHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHH
Confidence 56778999999999999999999999999997 9999999999999999864 22 46899999999999999999
Q ss_pred cc-ccc-----------------c-CC----CCCCHHHHHHHHhccC
Q psy3879 224 EI-YWR-----------------D-NY----TCPSEEEYRTMTIRSE 247 (247)
Q Consensus 224 ~i-~~~-----------------~-~~----~~~~~~~y~~~~~~KT 247 (247)
|+ .|+ . .. .++++++|++|+..||
T Consensus 197 Dl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KT 243 (395)
T 2ihi_A 197 DTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKT 243 (395)
T ss_dssp HHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccc
Confidence 99 452 1 11 1569999999999998
No 89
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.45 E-value=5.1e-14 Score=127.55 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=83.1
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHH--HHHHHhcC--CCh---HHHHHHHHHHHHHHHHHHh
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAI--ALEKVQSL--GHP---EATAVYTEQLLELHRGQGM 223 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~--a~q~~~~l--~~~---~~~~~~~~~~~~l~~Gq~~ 223 (247)
.|..+++|||++|.+++|||+|++|..||...|+..+|+++.. +|+++.+. +.+ +++..+++.+..++.||.+
T Consensus 118 iH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 197 (390)
T 3dyh_A 118 LQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLY 197 (390)
T ss_dssp HHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999864 57888763 223 6888999999999999999
Q ss_pred cccccc---------------CCCCCCHHHHHHHHhccC
Q psy3879 224 EIYWRD---------------NYTCPSEEEYRTMTIRSE 247 (247)
Q Consensus 224 ~i~~~~---------------~~~~~~~~~y~~~~~~KT 247 (247)
|+.|++ +..++++++|++|++.||
T Consensus 198 Dl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KT 236 (390)
T 3dyh_A 198 DVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKT 236 (390)
T ss_dssp HHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHT
T ss_pred HHhhcccccccccccccccccccCCCCHHHHHHHHHhhh
Confidence 999831 113579999999999999
No 90
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.41 E-value=1.5e-13 Score=118.87 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=74.5
Q ss_pred HHhhhhhhcccccchhhhcCCCchhhhhcHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHH---HHHH--HHHHH
Q psy3879 151 IRKFDMRIDDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGH------PEATAVY---TEQL--LELHR 219 (247)
Q Consensus 151 ~~Kt~~~~dd~~d~~~lr~g~~t~~~~~g~~~ai~~~~~l~~~a~q~~~~l~~------~~~~~~~---~~~~--~~l~~ 219 (247)
.|..+++|||+.|.++ |||+||+|.+||...||++||+++..||+++.+.+. ..++..+ ++++ ..++.
T Consensus 77 iH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~ 155 (273)
T 3qkc_B 77 MHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVE 155 (273)
T ss_dssp HHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHH
Confidence 4677899999999988 999999999999999999999999999999987653 2344444 4444 67899
Q ss_pred HHHhccccccCCCCCCHHHHHHH-HhccC
Q psy3879 220 GQGMEIYWRDNYTCPSEEEYRTM-TIRSE 247 (247)
Q Consensus 220 Gq~~~i~~~~~~~~~~~~~y~~~-~~~KT 247 (247)
||.+|+.|..+ ++ ++|+++ +++||
T Consensus 156 GQ~lDl~~~~~---~~-~eyl~~I~~~KT 180 (273)
T 3qkc_B 156 GQYHELGLNQL---ND-LELIEYVCKKKE 180 (273)
T ss_dssp HHHHHTTCCSS---CC-HHHHHHHHHHTH
T ss_pred HHHHHHhcCCC---CC-HHHHHHHHHhhH
Confidence 99999999432 24 477765 49998
No 91
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=83.71 E-value=12 Score=31.98 Aligned_cols=54 Identities=15% Similarity=-0.030 Sum_probs=35.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCC-CHHHHHHHhHHhhhh
Q psy3879 103 EKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCP-SEEEYRTMTIRKFDM 156 (247)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~-s~~~Y~~ii~~Kt~~ 156 (247)
..+.+...+.....+.+.+.+.+.+-..+..|......| |.++|+++-....|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~ 179 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGV 179 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccch
Confidence 333333346677788888999999999988887766679 999999887665553
No 92
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=82.27 E-value=1.8 Score=38.35 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhh
Q psy3879 110 HPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDM 156 (247)
Q Consensus 110 ~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~ 156 (247)
.+...+.+.+.+.+++.+-..+..|......||.++|+++-...+|.
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~ 221 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAH 221 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCH
Confidence 45667788889999999999999887665579999999987666654
No 93
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=72.00 E-value=21 Score=31.46 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=69.1
Q ss_pred hcCCCcchHHHHH---HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCchhhhc--chhH--HHHHH
Q psy3879 22 SQVPGKQIRTKLA---YAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSIY--GIAS--TINAA 94 (247)
Q Consensus 22 ~~~~GK~~R~~l~---~~~~~~~~~~~~~~~~~a~avElih~asLihDDI~D~s~~RRG~p~~h~~~--G~~~--Ai~~g 94 (247)
+...+|++.|.+- .++++.+-.-....+.++ =...++..+.||+.|++.. ...+++..+ |... .++.
T Consensus 56 l~~~~~~l~~~~~t~~~laar~YP~a~~e~l~li---ad~~~~~F~lDD~~d~~~~--~l~~~~~~ll~G~~~~~Pl~~- 129 (374)
T 1yyq_A 56 LKVDPKRLQASLQTIVGMVVYSWAKVSKECMADL---SIHYTYTLVLDDSKDDPYP--TMVNYFDDLQAGREQAHPWWA- 129 (374)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHHHH---HHHHHHHHHHTTCCSCSHH--HHTTHHHHHHHTCCCSSHHHH-
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH---HHHHHHHHhhcccccCcHH--HHHHHHHHHhcCCCCCChHHH-
Confidence 4456677776653 244444432222222222 2566788889999987541 122233322 1111 1111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhh
Q psy3879 95 NYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMR 157 (247)
Q Consensus 95 d~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~ 157 (247)
.+...+..+.+.-.|.....+...+.+-..|..++... .. ..|+.++|..+.+.+||..
T Consensus 130 --al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n-~~-~~p~~~~Y~~~rR~~sG~~ 188 (374)
T 1yyq_A 130 --LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN-FG-GFPGSHDYPQFLRRMNGLG 188 (374)
T ss_dssp --HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC-CC-CCTTCTTHHHHHHHHHHCH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-cC-CCCCHHHHHHHHHhhccHH
Confidence 12333344444435666667777777777777777543 22 2468889999899999873
No 94
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=70.06 E-value=61 Score=29.01 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=39.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHH
Q psy3879 101 ALEKVQSLGHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIR 152 (247)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~ 152 (247)
.++.+.+...+...+.+.+.+.+.+.+-..+..|......||.++|+++-..
T Consensus 244 ~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~ 295 (433)
T 3v1v_A 244 AMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQF 295 (433)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3344444445667788888999999999999988776667999999997543
No 95
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=68.32 E-value=6.5 Score=29.72 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHhhhhhhh
Q psy3879 90 TINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQGMEI 132 (247)
Q Consensus 90 Ai~~gd~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~dl 132 (247)
.|++|||+-+..+.+++.......+..+++++.++.+....-+
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999988778888999999988877655443
No 96
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=59.44 E-value=25 Score=32.69 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHh
Q psy3879 204 PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTI 244 (247)
Q Consensus 204 ~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~~ 244 (247)
...+..+.+++..++.+=..+-.|..+...||.++|++...
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~ 405 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANAL 405 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccc
Confidence 34677788999999999999999998887899999998753
No 97
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=54.47 E-value=23 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHh
Q psy3879 204 PEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTI 244 (247)
Q Consensus 204 ~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~~ 244 (247)
...+..+.+++..++.+-..+-.|..+...||.++|++...
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~ 401 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNAL 401 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcc
Confidence 34677788899999999999999998877899999998753
No 98
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=53.37 E-value=24 Score=30.91 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHh
Q psy3879 203 HPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTI 244 (247)
Q Consensus 203 ~~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~~ 244 (247)
.+....-+.+++..++.+-..+..|+.+...||.++|+++-.
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~ 216 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRR 216 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 456678888999999999999999998877899999998743
No 99
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=50.56 E-value=27 Score=32.57 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHH
Q psy3879 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 243 (247)
Q Consensus 206 ~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~ 243 (247)
.+..+.+++..++.+-..+..|......||.++|++..
T Consensus 383 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~ 420 (569)
T 2j5c_A 383 STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNS 420 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcc
Confidence 55667888999999999999999988889999999864
No 100
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=48.92 E-value=24 Score=31.68 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHh
Q psy3879 202 GHPEATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTI 244 (247)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~~ 244 (247)
..+....-+.+++..++.+-..+..|+.....||.++|+++-.
T Consensus 252 a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~ 294 (433)
T 3v1v_A 252 ATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQ 294 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3555677788899999999999999998887899999999743
No 101
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=48.86 E-value=41 Score=28.47 Aligned_cols=42 Identities=19% Similarity=-0.011 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccccccCCCCC-CHHHHHHHHh
Q psy3879 203 HPEATAVYTEQLLELHRGQGMEIYWRDNYTCP-SEEEYRTMTI 244 (247)
Q Consensus 203 ~~~~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~-~~~~y~~~~~ 244 (247)
.+.....+.+.+...+.+-..+..|+.....| |.++|+++-.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~ 174 (337)
T 1ps1_A 132 TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRR 174 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcc
Confidence 45667778889999999999999999888889 9999998743
No 102
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=45.48 E-value=54 Score=31.75 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHH
Q psy3879 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 243 (247)
Q Consensus 206 ~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~ 243 (247)
.+..+.+++.+++.+-..+-.|..+...||.+||++..
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na 604 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTY 604 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 56677888999999999999999888889999999864
No 103
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=40.48 E-value=74 Score=31.04 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHH
Q psy3879 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 243 (247)
Q Consensus 206 ~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~ 243 (247)
.+..+.+++.+++.+-..+-.|..+...||.+||++..
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na 663 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNG 663 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 46677888999999999999999888889999999864
No 104
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=38.04 E-value=1.5e+02 Score=27.29 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhccCCCCCCHHHHHHHhHHhhhhhh----------------------------------
Q psy3879 113 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRKFDMRI---------------------------------- 158 (247)
Q Consensus 113 ~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~s~~~Y~~ii~~Kt~~~~---------------------------------- 158 (247)
.+..+.+.+.+++.+-..+..|......||.++|++....-+|.-.
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i 435 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFV 435 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHH
Confidence 5566778888899998889889887778999999987765554310
Q ss_pred ----cccccc-hhhhcCCC-chhhh----hc--HHHHHHHHHHHHHHHHHHHhc
Q psy3879 159 ----DDIEDN-SILRRGIP-VAHSI----YG--IASTINAANYVVAIALEKVQS 200 (247)
Q Consensus 159 ----dd~~d~-~~lr~g~~-t~~~~----~g--~~~ai~~~~~l~~~a~q~~~~ 200 (247)
+|+... ....+|.. +...+ +| .+.|+.....++..+.+.+..
T Consensus 436 ~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 436 LRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp HHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 23345553 33333 23 567888888888888877765
No 105
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=36.76 E-value=72 Score=29.46 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHH
Q psy3879 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 243 (247)
Q Consensus 206 ~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~ 243 (247)
.+..+.+++..++.+-..+-.|......||.++|++..
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~ 393 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENS 393 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcc
Confidence 56667888999999999999999988889999999864
No 106
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=35.50 E-value=1.2e+02 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHH
Q psy3879 206 ATAVYTEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 243 (247)
Q Consensus 206 ~~~~~~~~~~~l~~Gq~~~i~~~~~~~~~~~~~y~~~~ 243 (247)
.+..+.+++.+++.+-..+-.|..+...||.+||++..
T Consensus 598 ~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na 635 (785)
T 3s9v_A 598 VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENA 635 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 55677788999999999999999888889999999875
No 107
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=29.31 E-value=35 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=15.2
Q ss_pred CCCCCchhhhcchhHHHHHHHHHHHHH
Q psy3879 75 RRGIPVAHSIYGIASTINAANYVVAIA 101 (247)
Q Consensus 75 RRG~p~~h~~~G~~~Ai~~gd~l~~~~ 101 (247)
+...|..|-+||+ ++++|-..|..+
T Consensus 3 ~k~~p~FHdKYGn--~~L~~Ga~FC~a 27 (56)
T 1v54_K 3 QKRAPDFHDKYGN--AVLASGATFCVA 27 (56)
T ss_dssp ---CCCHHHHHHH--HHHHHHHHHHHH
T ss_pred cccCcchhhhcCc--eeeecchhhhHh
Confidence 4456899999998 455555544433
Done!