RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3879
(247 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 90.1 bits (222), Expect = 4e-22
Identities = 94/147 (63%), Positives = 121/147 (82%), Gaps = 1/147 (0%)
Query: 9 EQDEK-LLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
E ++ LL+PY Y+ Q+PGKQ+RTKL+ AFN+WL +PE+KL I ++ +MLHN+SLLIDD
Sbjct: 1 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDD 60
Query: 68 IEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRG 127
IEDNS LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLLELH+G
Sbjct: 61 IEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQG 120
Query: 128 QGMEIYWRDNYTCPSEEEYRTMTIRKF 154
QG++IYWRDNYTCP+EEEY+ M ++K
Sbjct: 121 QGLDIYWRDNYTCPTEEEYKAMVLQKT 147
Score = 33.1 bits (74), Expect = 0.022
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 159 DDIEDNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELH 218
DDIEDNS LRRG PVAHSIYGI S IN+ANYV + LEKV +L HP+A ++T QLLELH
Sbjct: 59 DDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELH 118
Query: 219 RGQGMEIYWRDNYTCPSEEEYRTM 242
+GQG++IYWRDNYTCP+EEEY+ M
Sbjct: 119 QGQGLDIYWRDNYTCPTEEEYKAM 142
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 63.9 bits (154), Expect = 1e-12
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 8 PEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDD 67
P Q+ +++ Y + + GK++R L YA + + L A ++ +H SL+ DD
Sbjct: 26 PFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDD 85
Query: 68 IEDNSILRR--GIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLL--- 122
+ G+P H +G A+ I A + + +A + PE + ++
Sbjct: 86 LPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISEL 145
Query: 123 -------ELHRGQGMEIYWRDNYTCPSEEEYRTM 149
+ GQ +++ + E
Sbjct: 146 ASASGIAGMCGGQALDLDAEGKHVPLDALERIHR 179
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 54.3 bits (129), Expect = 3e-09
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIED 70
D +L + Y GK+IR L + LN E + ++M+H SL+ DD+
Sbjct: 26 DTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPA 85
Query: 71 NSILRRG--IPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQL------- 121
H +YG + I A + ++ A E + S
Sbjct: 86 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASG 145
Query: 122 -LELHRGQGMEIYWRDNYTCPSEEEYRTM 149
+ + GQ +++ E +
Sbjct: 146 HVGMVGGQMLDMQSEGQ--PIDLETLEMI 172
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 38.9 bits (89), Expect = 4e-04
Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 26 GKQIRTKLAYAFNNWLNIPEEK-------LLAIGDIIQMLHNSSLLIDDIEDNSILRRGI 78
GK R A L+ P +K LA+G I++ L+ DDI D S+ RRG
Sbjct: 51 GKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQ 110
Query: 79 PVAHSIYGIASTINAANYVVAIALEKV------QSLGHPEATAVYTEQLLELHRGQGMEI 132
+ G+ ++++ ++ +V Q + ++ + + GQ +++
Sbjct: 111 LCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDL 170
Query: 133 YW----RDNYTCPSEEEYRTMTIRKFDMRI 158
+ + + SEE Y+ + K
Sbjct: 171 ITAPVSKVDLSHFSEERYKAIVKYKTAFYS 200
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 35.4 bits (80), Expect = 0.004
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 11 DEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIP-EEKLLAIGDIIQMLHNSSLLIDDIE 69
+ + + GK +R +L+ + E ++ ++++H +SLL DD+
Sbjct: 17 SQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVI 76
Query: 70 DNSILRRGIPVAHSIYGIASTINAANYVVAIALEKVQSLGHPEATAVYTEQLLELHRGQG 129
D + RRG + +YG + + A + V+ A V+ +G+ + + + ++ +
Sbjct: 77 DGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAEL 136
Query: 130 MEIYWRDNYTCPSEEEYRTMTIRKF 154
+E R Y ++EEY + K
Sbjct: 137 IEQLSR--YKPITKEEYLRIVEGKS 159
>d1e9ya2 d.8.1.1 (A:1-105) Urease, gamma-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 105
Score = 26.1 bits (58), Expect = 2.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 108 LGHPEATAVYTEQLLELHR 126
L + EA A+ + ++E R
Sbjct: 30 LNYVEAVALISAHIMEEAR 48
Score = 26.1 bits (58), Expect = 2.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 201 LGHPEATAVYTEQLLELHR 219
L + EA A+ + ++E R
Sbjct: 30 LNYVEAVALISAHIMEEAR 48
>d4ubpa_ d.8.1.1 (A:) Urease, gamma-subunit {Bacillus pasteurii
[TaxId: 1474]}
Length = 100
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 108 LGHPEATAVYTEQLLELHR 126
L +PEA A+ T ++E R
Sbjct: 30 LNYPEAVAIITSFIMEGAR 48
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 201 LGHPEATAVYTEQLLELHR 219
L +PEA A+ T ++E R
Sbjct: 30 LNYPEAVAIITSFIMEGAR 48
>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 483
Score = 26.7 bits (59), Expect = 3.3
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 64 LIDDIEDNSILRRGIP-VAHSIYGIASTINAANYVVAI 100
+ + + L G P V + G + A N +
Sbjct: 111 IKESEKAGRSLLNGFPGVNFGVKGCRKVLEAVNLPLQA 148
Score = 26.3 bits (58), Expect = 3.8
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 159 DDIEDNSILRRGIP-VAHSIYGIASTINAANYVVAI 193
+ + L G P V + G + A N +
Sbjct: 113 ESEKAGRSLLNGFPGVNFGVKGCRKVLEAVNLPLQA 148
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase
{Halothermothrix orenii [TaxId: 31909]}
Length = 79
Score = 24.6 bits (53), Expect = 5.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 35 YAFNNWLNIPEEKLLAIGDIIQMLHNSSLLIDDIEDNSILRRGIPVAHSI 84
Y ++N +N P + +A G+ + ++ I +EDN+ L IP +I
Sbjct: 25 YVYHNLVNRPVKIKVASGNWTLLFNSGDKEITPVEDNNKLMYTIPAYTTI 74
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.5 bits (55), Expect = 7.0
Identities = 12/65 (18%), Positives = 28/65 (43%)
Query: 3 SKSGDPEQDEKLLQPYTYISQVPGKQIRTKLAYAFNNWLNIPEEKLLAIGDIIQMLHNSS 62
S +G E +K++Q ++ + T + + E++LL I++ N+
Sbjct: 100 SGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAK 159
Query: 63 LLIDD 67
+ +D
Sbjct: 160 TVKND 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 959,355
Number of extensions: 44181
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 18
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)