Query psy388
Match_columns 94
No_of_seqs 125 out of 1027
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:44:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 99.9 7.5E-26 1.6E-30 173.3 -0.1 81 1-81 416-496 (500)
2 PHA03392 egt ecdysteroid UDP-g 99.7 6.2E-18 1.3E-22 132.0 7.0 58 1-58 439-497 (507)
3 KOG1192|consensus 99.1 2.8E-10 6E-15 87.1 6.5 53 1-55 429-481 (496)
4 PF05478 Prominin: Prominin; 85.5 1.4 3E-05 36.9 4.3 43 43-85 85-127 (806)
5 PF07856 Orai-1: Mediator of C 79.3 2.6 5.6E-05 29.3 3.1 76 8-83 91-172 (175)
6 PF07069 PRRSV_2b: Porcine rep 73.8 16 0.00034 21.5 5.1 34 49-82 26-61 (73)
7 PF15013 CCSMST1: CCSMST1 fami 69.4 3.8 8.3E-05 24.9 1.8 19 35-53 21-39 (77)
8 PF07219 HemY_N: HemY protein 65.9 26 0.00057 21.9 5.2 24 53-76 19-42 (108)
9 PF15050 SCIMP: SCIMP protein 64.6 20 0.00044 23.7 4.5 10 70-79 26-35 (133)
10 PF11628 TCR_zetazeta: T-cell 62.7 18 0.0004 18.4 3.2 19 47-65 5-23 (33)
11 PF01102 Glycophorin_A: Glycop 59.9 24 0.00052 23.1 4.3 21 54-74 68-88 (122)
12 PF02038 ATP1G1_PLM_MAT8: ATP1 55.9 25 0.00053 19.6 3.3 25 44-68 8-32 (50)
13 PF15050 SCIMP: SCIMP protein 54.7 35 0.00077 22.6 4.4 37 42-78 1-38 (133)
14 PRK14471 F0F1 ATP synthase sub 53.4 38 0.00083 22.5 4.6 25 67-91 22-46 (164)
15 PRK07353 F0F1 ATP synthase sub 48.7 43 0.00094 21.5 4.2 27 65-91 17-43 (140)
16 PRK14475 F0F1 ATP synthase sub 47.3 35 0.00077 22.9 3.7 19 72-90 29-47 (167)
17 KOG4331|consensus 47.1 29 0.00062 29.8 3.7 43 42-84 97-139 (865)
18 PRK04125 murein hydrolase regu 46.7 87 0.0019 21.0 5.5 13 64-76 106-118 (141)
19 PRK05759 F0F1 ATP synthase sub 46.5 60 0.0013 21.2 4.7 22 70-91 21-42 (156)
20 PF02060 ISK_Channel: Slow vol 44.6 93 0.002 20.7 5.2 18 18-35 13-30 (129)
21 PRK09174 F0F1 ATP synthase sub 44.2 58 0.0013 22.9 4.5 22 70-91 70-91 (204)
22 PRK13453 F0F1 ATP synthase sub 42.7 92 0.002 21.0 5.2 23 69-91 34-56 (173)
23 COG2011 AbcD ABC-type metal io 42.1 49 0.0011 24.0 3.8 34 45-78 186-219 (222)
24 PF06643 DUF1158: Protein of u 42.1 78 0.0017 19.1 5.2 16 65-80 64-79 (82)
25 PRK13460 F0F1 ATP synthase sub 41.8 55 0.0012 22.1 4.0 21 70-90 33-53 (173)
26 PF10661 EssA: WXG100 protein 41.7 54 0.0012 22.0 3.8 16 60-75 129-144 (145)
27 PF10577 UPF0560: Uncharacteri 41.3 41 0.00089 28.7 3.8 17 41-59 266-282 (807)
28 COG0711 AtpF F0F1-type ATP syn 40.9 80 0.0017 21.2 4.7 27 66-92 19-45 (161)
29 PF15086 UPF0542: Uncharacteri 40.9 81 0.0018 19.0 8.1 15 17-31 6-20 (74)
30 PRK13454 F0F1 ATP synthase sub 40.6 90 0.002 21.3 5.0 22 70-91 48-69 (181)
31 PTZ00046 rifin; Provisional 40.2 79 0.0017 24.5 4.9 8 85-92 342-349 (358)
32 PF05186 Dpy-30: Dpy-30 motif; 39.6 36 0.00079 18.0 2.3 20 3-22 17-36 (42)
33 PRK11024 colicin uptake protei 39.3 27 0.00058 22.8 2.1 14 49-62 20-33 (141)
34 PRK14473 F0F1 ATP synthase sub 39.3 1.1E+02 0.0025 20.2 5.3 27 66-92 21-47 (164)
35 TIGR01477 RIFIN variant surfac 38.9 84 0.0018 24.3 4.9 7 86-92 338-344 (353)
36 PF00558 Vpu: Vpu protein; In 38.0 59 0.0013 19.9 3.3 19 49-67 3-21 (81)
37 PF00430 ATP-synt_B: ATP synth 36.9 72 0.0016 19.9 3.8 22 69-90 15-36 (132)
38 PRK06569 F0F1 ATP synthase sub 36.0 1.3E+02 0.0028 20.5 5.0 22 69-90 26-47 (155)
39 TIGR02804 ExbD_2 TonB system t 35.2 54 0.0012 20.8 3.0 14 49-62 9-22 (121)
40 TIGR02801 tolR TolR protein. T 35.0 39 0.00085 21.5 2.3 14 49-62 10-23 (129)
41 cd07912 Tweety_N N-terminal do 34.6 1.9E+02 0.0041 22.8 6.4 14 19-32 4-17 (418)
42 PF00201 UDPGT: UDP-glucoronos 33.9 14 0.0003 28.5 0.0 23 65-87 476-498 (500)
43 PF11057 Cortexin: Cortexin of 33.8 75 0.0016 19.3 3.2 14 62-75 40-53 (81)
44 PRK11267 biopolymer transport 33.5 40 0.00088 22.0 2.2 14 49-62 23-36 (141)
45 PF04659 Arch_fla_DE: Archaeal 33.5 34 0.00073 21.6 1.8 19 16-34 18-36 (99)
46 PRK13461 F0F1 ATP synthase sub 33.4 1.4E+02 0.0031 19.6 5.2 22 70-91 22-43 (159)
47 PF14756 Pdase_C33_assoc: Pept 33.3 22 0.00047 23.6 0.9 25 10-34 42-66 (147)
48 PRK14474 F0F1 ATP synthase sub 32.8 1.5E+02 0.0032 21.4 5.3 31 62-92 14-44 (250)
49 TIGR00540 hemY_coli hemY prote 32.5 1.3E+02 0.0029 22.7 5.2 45 26-76 21-67 (409)
50 smart00394 RIIa RIIalpha, Regu 32.4 74 0.0016 16.0 3.3 24 4-27 11-34 (38)
51 PF06667 PspB: Phage shock pro 31.7 1.2E+02 0.0026 18.2 4.1 26 51-76 4-29 (75)
52 TIGR02803 ExbD_1 TonB system t 30.6 52 0.0011 20.8 2.3 14 49-62 9-22 (122)
53 PF05478 Prominin: Prominin; 30.4 24 0.00051 29.7 0.9 29 53-82 99-127 (806)
54 PRK14472 F0F1 ATP synthase sub 29.4 1.8E+02 0.0039 19.5 5.2 21 70-90 35-55 (175)
55 PF11395 DUF2873: Protein of u 29.1 97 0.0021 16.3 4.3 9 42-50 4-12 (43)
56 PRK08476 F0F1 ATP synthase sub 29.0 1.7E+02 0.0037 19.1 5.2 26 66-91 20-45 (141)
57 PF05944 Phage_term_smal: Phag 29.0 50 0.0011 21.8 2.1 15 16-30 64-78 (132)
58 PRK10747 putative protoheme IX 28.4 1.8E+02 0.0039 22.0 5.3 24 53-76 44-67 (398)
59 COG3534 AbfA Alpha-L-arabinofu 28.4 43 0.00094 27.0 1.9 30 14-44 130-163 (501)
60 COG0848 ExbD Biopolymer transp 27.6 62 0.0013 21.4 2.4 15 49-63 21-35 (137)
61 CHL00118 atpG ATP synthase CF0 27.6 1.6E+02 0.0035 19.4 4.4 24 68-91 37-60 (156)
62 PF02197 RIIa: Regulatory subu 27.5 96 0.0021 15.8 2.6 23 4-26 11-33 (38)
63 PF03929 PepSY_TM: PepSY-assoc 26.4 88 0.0019 15.0 3.4 17 47-63 6-22 (27)
64 PF05568 ASFV_J13L: African sw 26.4 1.8E+02 0.0039 20.0 4.4 10 43-52 25-34 (189)
65 PF09919 DUF2149: Uncharacteri 25.6 1.1E+02 0.0024 19.0 3.1 19 48-66 6-24 (92)
66 TIGR02976 phageshock_pspB phag 25.4 1.6E+02 0.0034 17.6 4.2 24 52-75 5-28 (75)
67 PF14770 TMEM18: Transmembrane 24.9 1.1E+02 0.0023 20.0 3.0 20 19-39 51-70 (123)
68 PF06709 DUF1196: Protein of u 24.7 1.1E+02 0.0023 16.9 2.5 18 74-91 19-36 (51)
69 TIGR03321 alt_F1F0_F0_B altern 24.3 2.5E+02 0.0055 20.0 5.2 25 67-91 19-43 (246)
70 PF11346 DUF3149: Protein of u 24.0 1.3E+02 0.0028 16.0 4.6 12 44-55 3-14 (42)
71 PF14043 WVELL: WVELL protein 23.7 82 0.0018 19.0 2.1 20 7-26 11-30 (75)
72 COG5102 SFT2 Membrane protein 23.3 2.3E+02 0.0051 20.0 4.6 29 30-58 50-78 (201)
73 TIGR02384 RelB_DinJ addiction 23.3 1.8E+02 0.0038 17.5 3.6 31 4-34 17-47 (83)
74 COG5547 Small integral membran 23.2 1.6E+02 0.0035 17.0 4.3 20 43-62 2-21 (62)
75 KOG3814|consensus 23.2 62 0.0013 25.8 1.9 27 7-33 418-444 (531)
76 PHA02688 ORF059 IMV protein VP 23.0 1.8E+02 0.0039 22.3 4.3 61 16-80 256-316 (323)
77 PF03908 Sec20: Sec20; InterP 22.7 1.2E+02 0.0026 18.2 2.9 14 50-63 68-81 (92)
78 KOG4433|consensus 22.6 3.6E+02 0.0079 22.0 6.1 63 15-82 4-74 (526)
79 PF14979 TMEM52: Transmembrane 22.5 1.8E+02 0.0039 19.9 3.8 7 66-72 37-43 (154)
80 PF08390 TRAM1: TRAM1-like pro 22.4 1.7E+02 0.0036 16.7 4.3 21 41-61 18-38 (65)
81 PF04689 S1FA: DNA binding pro 22.1 68 0.0015 18.9 1.5 19 67-85 30-48 (69)
82 PF04906 Tweety: Tweety; Inte 22.1 3E+02 0.0064 21.4 5.5 17 65-81 33-49 (406)
83 PF06837 Fijivirus_P9-2: Fijiv 22.0 3E+02 0.0065 19.7 5.0 65 10-80 43-109 (214)
84 PHA02851 EEV glycoprotein; Pro 21.9 1.2E+02 0.0025 21.2 2.9 12 74-85 22-33 (223)
85 PF08418 Pol_alpha_B_N: DNA po 21.7 71 0.0015 22.7 1.9 45 3-48 14-58 (253)
86 PF15179 Myc_target_1: Myc tar 21.3 2.6E+02 0.0057 19.8 4.6 42 42-83 10-55 (197)
87 PF00957 Synaptobrevin: Synapt 21.0 1.7E+02 0.0038 17.2 3.3 11 44-54 62-72 (89)
88 PF04221 RelB: RelB antitoxin; 20.8 1.7E+02 0.0038 17.2 3.3 32 3-34 15-46 (83)
89 PF04276 DUF443: Protein of un 20.6 2E+02 0.0044 19.9 4.0 9 44-52 79-87 (199)
90 PF05568 ASFV_J13L: African sw 20.1 3E+02 0.0065 19.0 4.5 14 46-59 25-38 (189)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.91 E-value=7.5e-26 Score=173.29 Aligned_cols=81 Identities=47% Similarity=0.840 Sum_probs=8.1
Q ss_pred ChhhhHHhhcCCCCHHHHHHHHHHHHHhcCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy388 1 MQYYSLLSKDTPMSPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNV 80 (94)
Q Consensus 1 a~~ls~~~~drP~~P~d~av~wiE~vir~~g~~~l~~~~~~l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (94)
|+++|++++|||++|.|+|+||||||+||||++||++++.++||+|||+|||+++++++++++++++++++++++|++++
T Consensus 416 a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (500)
T PF00201_consen 416 AKRLSSLFRDRPISPLERAVWWIEYVARHGGAPHLRSPARDLSFYQYYLLDVIAFLLLIILLIIYIIFKICRFVCRKCVK 495 (500)
T ss_dssp HHHHHHTTT-----------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCcccCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999998888888888888888888888876
Q ss_pred h
Q psy388 81 I 81 (94)
Q Consensus 81 ~ 81 (94)
.
T Consensus 496 ~ 496 (500)
T PF00201_consen 496 K 496 (500)
T ss_dssp -
T ss_pred c
Confidence 5
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.73 E-value=6.2e-18 Score=131.97 Aligned_cols=58 Identities=33% Similarity=0.703 Sum_probs=54.3
Q ss_pred ChhhhHHhhcCCCCHHHHHHHHHHHHHhcC-CCccccccccCccHHHHHHHHHHHHHHH
Q psy388 1 MQYYSLLSKDTPMSPIEKSIWWIEYVLRHK-GVAHLHSAAADLSYVQYYLLDVIAFIIT 58 (94)
Q Consensus 1 a~~ls~~~~drP~~P~d~av~wiE~vir~~-g~~~l~~~~~~l~~~qy~~lDv~~~l~~ 58 (94)
|+++|+.++|+|++|.|+|+||||||+||+ |++|||+++.++||+|||++||++++++
T Consensus 439 a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l~~~qy~~lDv~~~~~~ 497 (507)
T PHA03392 439 LKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSYILVPLVT 497 (507)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999 9999999999999999999999866543
No 3
>KOG1192|consensus
Probab=99.08 E-value=2.8e-10 Score=87.08 Aligned_cols=53 Identities=47% Similarity=0.830 Sum_probs=50.5
Q ss_pred ChhhhHHhhcCCCCHHHHHHHHHHHHHhcCCCccccccccCccHHHHHHHHHHHH
Q psy388 1 MQYYSLLSKDTPMSPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAF 55 (94)
Q Consensus 1 a~~ls~~~~drP~~P~d~av~wiE~vir~~g~~~l~~~~~~l~~~qy~~lDv~~~ 55 (94)
|++++.+++|||++| |.+++|+||+.|+++++++++. .+++|++|+++|++.+
T Consensus 429 ~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~~~l~~~-~~~~~~~~~~~d~~~~ 481 (496)
T KOG1192|consen 429 AKRLSEILRDQPISP-ELAVKWVEFVARHGGAKHLKEA-AHLSFIEYGSLDVIAF 481 (496)
T ss_pred HHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCcccCcc-ccCChhhhhhhHHHHH
Confidence 478999999999999 9999999999999999999999 9999999999999976
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.53 E-value=1.4 Score=36.90 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy388 43 SYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNVIRLES 85 (94)
Q Consensus 43 ~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (94)
.+..|+--=++...+.++++++.-+.-++.|+||||-+...+.
T Consensus 85 ~~l~~~~g~~v~~~i~ll~~il~P~vg~~fCcCRCc~~CGg~~ 127 (806)
T PF05478_consen 85 ELLAYEWGFLVCAVIGLLFIILMPLVGLCFCCCRCCGNCGGRM 127 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCcc
Confidence 4455554444333333333333333334444556554433443
No 5
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=79.25 E-value=2.6 Score=29.25 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=46.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHhc--C-CCccccccccCccHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Q psy388 8 SKDTPMSPIEKSIWWIEYVLRH--K-GVAHLHSAAADLSYVQYYLL--DVIAFIITILLVLLLALYL-ATVRVLRKLNVI 81 (94)
Q Consensus 8 ~~drP~~P~d~av~wiE~vir~--~-g~~~l~~~~~~l~~~qy~~l--Dv~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (94)
++..|.+|.++.-.|+|-.=++ . |..-+-.+-.-++|++++.. ..-+....++++...+++. .....+|.....
T Consensus 91 ~~~~~~sP~~~f~~~cE~~W~~s~~lGi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~li~~~~~~~~wr~l~~~ 170 (175)
T PF07856_consen 91 YSPVPPSPHRRFHRYCELAWRFSTVLGIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVLLIFVVFIQHFWRSLVSH 170 (175)
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457889999999999832222 1 55544555567889999988 6665555555544444444 344556666554
Q ss_pred hh
Q psy388 82 RL 83 (94)
Q Consensus 82 ~~ 83 (94)
+.
T Consensus 171 ~~ 172 (175)
T PF07856_consen 171 KY 172 (175)
T ss_pred cc
Confidence 33
No 6
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=73.79 E-value=16 Score=21.47 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhh
Q psy388 49 LLDVIAFIITILL--VLLLALYLATVRVLRKLNVIR 82 (94)
Q Consensus 49 ~lDv~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (94)
.+|++.++...+- +..++...++|.+|.-+.+.+
T Consensus 26 ivdiiiflailfgftiagwlvvfcirlv~sailr~r 61 (73)
T PF07069_consen 26 IVDIIIFLAILFGFTIAGWLVVFCIRLVCSAILRAR 61 (73)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577655543322 223444455555555544443
No 7
>PF15013 CCSMST1: CCSMST1 family
Probab=69.39 E-value=3.8 Score=24.88 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=13.0
Q ss_pred ccccccCccHHHHHHHHHH
Q psy388 35 LHSAAADLSYVQYYLLDVI 53 (94)
Q Consensus 35 l~~~~~~l~~~qy~~lDv~ 53 (94)
+.+...++||+|.+.+-+-
T Consensus 21 ~~~~~~~~PWyq~~~is~s 39 (77)
T PF15013_consen 21 RGGKQQRMPWYQVYPISLS 39 (77)
T ss_pred cCCCCCCCcceeeehhHHH
Confidence 5555566899998765444
No 8
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=65.86 E-value=26 Score=21.85 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 53 IAFIITILLVLLLALYLATVRVLR 76 (94)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~ 76 (94)
.++++++.++++++++.+++.+++
T Consensus 19 ~~~~l~~~~~~l~ll~~ll~~~~~ 42 (108)
T PF07219_consen 19 ALILLLLLFVVLYLLLRLLRRLLS 42 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555666666666654
No 9
>PF15050 SCIMP: SCIMP protein
Probab=64.63 E-value=20 Score=23.71 Aligned_cols=10 Identities=20% Similarity=-0.227 Sum_probs=4.6
Q ss_pred HHHHHHHHhh
Q psy388 70 ATVRVLRKLN 79 (94)
Q Consensus 70 ~~~~~~~~~~ 79 (94)
++.|+||+..
T Consensus 26 IlyCvcR~~l 35 (133)
T PF15050_consen 26 ILYCVCRWQL 35 (133)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 10
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=62.70 E-value=18 Score=18.45 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy388 47 YYLLDVIAFIITILLVLLL 65 (94)
Q Consensus 47 y~~lDv~~~l~~~~~~~~~ 65 (94)
.|.||.++++-.++++.++
T Consensus 5 CYiLDgiL~iYgiiiT~L~ 23 (33)
T PF11628_consen 5 CYILDGILFIYGIIITALY 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4788988777666555443
No 11
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.91 E-value=24 Score=23.14 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy388 54 AFIITILLVLLLALYLATVRV 74 (94)
Q Consensus 54 ~~l~~~~~~~~~~~~~~~~~~ 74 (94)
++++.+.+.++.+++.+..++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 333333333344443333333
No 12
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=55.88 E-value=25 Score=19.64 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 44 YVQYYLLDVIAFIITILLVLLLALY 68 (94)
Q Consensus 44 ~~qy~~lDv~~~l~~~~~~~~~~~~ 68 (94)
+|.|..|-+-+++++.+++++.++.
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILI 32 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhhccchHHHHHHHHHHHHH
Confidence 4778899888877776666555443
No 13
>PF15050 SCIMP: SCIMP protein
Probab=54.73 E-value=35 Score=22.59 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy388 42 LSYVQYYLLDVIAFIITI-LLVLLLALYLATVRVLRKL 78 (94)
Q Consensus 42 l~~~qy~~lDv~~~l~~~-~~~~~~~~~~~~~~~~~~~ 78 (94)
|+|+.-+.+=++++-+++ .+++..+++.++|..+|.=
T Consensus 1 M~WWr~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 1 MSWWRDNFWIILAVAIILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred CchHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455554444444332222 2222333444455555543
No 14
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=53.38 E-value=38 Score=22.54 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh
Q psy388 67 LYLATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
.+.+-+++++.+.+..-+++..+.+
T Consensus 22 ~~ll~~~l~~pi~~~l~~R~~~I~~ 46 (164)
T PRK14471 22 LLLLAKFAWKPILGAVKEREDSIKN 46 (164)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444566677776666666655544
No 15
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.73 E-value=43 Score=21.50 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy388 65 LALYLATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
.+.+.+-+++++.+.+..-.++.++..
T Consensus 17 il~~ll~~~l~~pi~~~l~~R~~~I~~ 43 (140)
T PRK07353 17 LLTFILNALFYKPVGKVVEEREDYIRT 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666665555555443
No 16
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=47.33 E-value=35 Score=22.92 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q psy388 72 VRVLRKLNVIRLESEKDIK 90 (94)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~ 90 (94)
+++++.+.+..-.++..+.
T Consensus 29 k~l~~pi~~~le~R~~~I~ 47 (167)
T PRK14475 29 KVLPKALAGALDAYAAKIQ 47 (167)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4455555555444444443
No 17
>KOG4331|consensus
Probab=47.09 E-value=29 Score=29.80 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy388 42 LSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNVIRLE 84 (94)
Q Consensus 42 l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (94)
.-|..|+-.=+...++++.++++.....++.++++||+++..+
T Consensus 97 ~~lv~~~~g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r 139 (865)
T KOG4331|consen 97 ILLVIYEAGMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGR 139 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCC
Confidence 3455554444444444444444444445555555555554333
No 18
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=46.74 E-value=87 Score=21.00 Aligned_cols=13 Identities=23% Similarity=0.069 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy388 64 LLALYLATVRVLR 76 (94)
Q Consensus 64 ~~~~~~~~~~~~~ 76 (94)
+.++-.+..++.|
T Consensus 106 l~vtg~v~~~l~r 118 (141)
T PRK04125 106 LACTGLFSQFILG 118 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444444
No 19
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.54 E-value=60 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+-+++++.+.+..-+++..+.+
T Consensus 21 l~~~~~~pi~~~l~~R~~~I~~ 42 (156)
T PRK05759 21 IMKFVWPPIMKALEERQKKIAD 42 (156)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4455566666655555555544
No 20
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=44.62 E-value=93 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCCccc
Q psy388 18 KSIWWIEYVLRHKGVAHL 35 (94)
Q Consensus 18 ~av~wiE~vir~~g~~~l 35 (94)
..-.|-|++-+.+.+.-+
T Consensus 13 L~~l~q~~~~~~~nsS~l 30 (129)
T PF02060_consen 13 LSKLWQETVQQSSNSSPL 30 (129)
T ss_dssp HHHHHHHHHHT--TTSSG
T ss_pred HHHHHHHHhcCCCCCCcc
Confidence 456788999888766555
No 21
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=44.19 E-value=58 Score=22.92 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+.++++..+.+..-+++.++.+
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~ 91 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQ 91 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555555555443
No 22
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.70 E-value=92 Score=21.03 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh
Q psy388 69 LATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
.+.+++++.+.+..-+++..+.+
T Consensus 34 lL~~~l~~pi~~~l~~R~~~I~~ 56 (173)
T PRK13453 34 LLKKFAWGPLKDVMDKRERDINR 56 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556665555555555443
No 23
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=42.13 E-value=49 Score=23.97 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy388 45 VQYYLLDVIAFIITILLVLLLALYLATVRVLRKL 78 (94)
Q Consensus 45 ~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (94)
||+|.-||.....+++++++.++=.+-.++.|+.
T Consensus 186 Y~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~ 219 (222)
T COG2011 186 YQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRL 219 (222)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999987766665555555444444554444
No 24
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=42.09 E-value=78 Score=19.14 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhh
Q psy388 65 LALYLATVRVLRKLNV 80 (94)
Q Consensus 65 ~~~~~~~~~~~~~~~~ 80 (94)
.+=+.++|+++|+..+
T Consensus 64 aiEy~viRfiwrRwfs 79 (82)
T PF06643_consen 64 AIEYFVIRFIWRRWFS 79 (82)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3447888999988754
No 25
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.77 E-value=55 Score=22.09 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIK 90 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ 90 (94)
+.+++++.+.+..-+++..+.
T Consensus 33 L~~~~~kpi~~~l~~R~~~I~ 53 (173)
T PRK13460 33 LKKFAWDVILKALDERASGVQ 53 (173)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 334555555555455544444
No 26
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=41.72 E-value=54 Score=22.00 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy388 60 LLVLLLALYLATVRVL 75 (94)
Q Consensus 60 ~~~~~~~~~~~~~~~~ 75 (94)
+++++..++.++|.+|
T Consensus 129 ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 129 LLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444455555443
No 27
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=41.26 E-value=41 Score=28.74 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=7.3
Q ss_pred CccHHHHHHHHHHHHHHHH
Q psy388 41 DLSYVQYYLLDVIAFIITI 59 (94)
Q Consensus 41 ~l~~~qy~~lDv~~~l~~~ 59 (94)
++.. |+-+-..++|...
T Consensus 266 Di~~--YHT~fLl~ILG~~ 282 (807)
T PF10577_consen 266 DITT--YHTVFLLAILGGT 282 (807)
T ss_pred Cchh--HHHHHHHHHHHHH
Confidence 4444 4444444444433
No 28
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=40.95 E-value=80 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy388 66 ALYLATVRVLRKLNVIRLESEKDIKKK 92 (94)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (94)
+.+.+.++++..+.+..-.++.++...
T Consensus 19 ll~ll~~~~~~pi~~~l~~R~~~I~~~ 45 (161)
T COG0711 19 LLWLLKKFVWKPILKALDERQAKIADD 45 (161)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455666777777767776666654
No 29
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=40.94 E-value=81 Score=18.97 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhcCC
Q psy388 17 EKSIWWIEYVLRHKG 31 (94)
Q Consensus 17 d~av~wiE~vir~~g 31 (94)
+-+.+-+|||++.|+
T Consensus 6 ~w~~~~v~~vAkdP~ 20 (74)
T PF15086_consen 6 AWASYIVEWVAKDPY 20 (74)
T ss_pred HHHHHHHHHHHcChH
Confidence 344555667766644
No 30
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.61 E-value=90 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+.+++++.+.+..-+++..+.+
T Consensus 48 l~k~l~~PI~~~l~~R~~~I~~ 69 (181)
T PRK13454 48 LTRVALPRIGAVLAERQGTITN 69 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655544
No 31
>PTZ00046 rifin; Provisional
Probab=40.23 E-value=79 Score=24.52 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q psy388 85 SEKDIKKK 92 (94)
Q Consensus 85 ~~~~~~~~ 92 (94)
++||-|||
T Consensus 342 RKKKMkKK 349 (358)
T PTZ00046 342 RKKKMKKK 349 (358)
T ss_pred hcchhHHH
Confidence 33344443
No 32
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=39.61 E-value=36 Score=17.98 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=13.1
Q ss_pred hhhHHhhcCCCCHHHHHHHH
Q psy388 3 YYSLLSKDTPMSPIEKSIWW 22 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~w 22 (94)
-+..+.+.||.+|.+-...|
T Consensus 17 gL~~l~~~rP~DPi~~La~~ 36 (42)
T PF05186_consen 17 GLAELAKERPEDPIEFLAEY 36 (42)
T ss_dssp HHHHHHHH--SSHHHHHHHH
T ss_pred HHHHHHHHCCCChHHHHHHH
Confidence 46778899999999854444
No 33
>PRK11024 colicin uptake protein TolR; Provisional
Probab=39.32 E-value=27 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLV 62 (94)
Q Consensus 49 ~lDv~~~l~~~~~~ 62 (94)
++||++++++++++
T Consensus 20 lIDVvfvLLiFFmv 33 (141)
T PRK11024 20 LLDVLLVLLLIFMA 33 (141)
T ss_pred HHHHHHHHHHHHHh
Confidence 78999777766544
No 34
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=39.26 E-value=1.1e+02 Score=20.21 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy388 66 ALYLATVRVLRKLNVIRLESEKDIKKK 92 (94)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (94)
+.+.+-+++++.+.+..-.++..+.+.
T Consensus 21 l~~lL~~fl~kpi~~~l~~R~~~I~~~ 47 (164)
T PRK14473 21 LIFLLRTFLYRPVLNLLNERTRRIEES 47 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666555543
No 35
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.91 E-value=84 Score=24.34 Aligned_cols=7 Identities=57% Similarity=0.809 Sum_probs=2.7
Q ss_pred hhhhhhh
Q psy388 86 EKDIKKK 92 (94)
Q Consensus 86 ~~~~~~~ 92 (94)
+||-|||
T Consensus 338 KKKMkKK 344 (353)
T TIGR01477 338 KKKMKKK 344 (353)
T ss_pred cchhHHH
Confidence 3333443
No 36
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=37.96 E-value=59 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLVLLLAL 67 (94)
Q Consensus 49 ~lDv~~~l~~~~~~~~~~~ 67 (94)
.+|+++++.+++.+++.++
T Consensus 3 ~l~i~~iialiv~~iiaIv 21 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIV 21 (81)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566665555544444333
No 37
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=36.91 E-value=72 Score=19.91 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q psy388 69 LATVRVLRKLNVIRLESEKDIK 90 (94)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~ 90 (94)
.+.+++++.+.+..-.++.++.
T Consensus 15 ~l~~~~~~pi~~~l~~R~~~I~ 36 (132)
T PF00430_consen 15 LLNKFLYKPIKKFLDERKAKIQ 36 (132)
T ss_dssp HHHHHTHHHHHHHCS--S-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444443
No 38
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.98 E-value=1.3e+02 Score=20.50 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q psy388 69 LATVRVLRKLNVIRLESEKDIK 90 (94)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~ 90 (94)
.+.++++..+.+..-+++..+.
T Consensus 26 ll~kf~~ppI~~iLe~R~~~I~ 47 (155)
T PRK06569 26 FVYKFITPKAEEIFNNRQTNIQ 47 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3345556666665555554443
No 39
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=35.23 E-value=54 Score=20.77 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLV 62 (94)
Q Consensus 49 ~lDv~~~l~~~~~~ 62 (94)
++||++++++++++
T Consensus 9 lIDVvflLLiFFmv 22 (121)
T TIGR02804 9 FIDIMLVLLAIVLI 22 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 68998776655443
No 40
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=34.98 E-value=39 Score=21.48 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLV 62 (94)
Q Consensus 49 ~lDv~~~l~~~~~~ 62 (94)
++||++++++++++
T Consensus 10 lIDVvFlLLiFFmv 23 (129)
T TIGR02801 10 YVDVMLVLLIIFMV 23 (129)
T ss_pred HHHHHHHHHHHHHh
Confidence 68998776655543
No 41
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=34.62 E-value=1.9e+02 Score=22.81 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCC
Q psy388 19 SIWWIEYVLRHKGV 32 (94)
Q Consensus 19 av~wiE~vir~~g~ 32 (94)
+=||+++.-+.|-.
T Consensus 4 ~~~~~~~~h~lPh~ 17 (418)
T cd07912 4 APWLVKLLHSLPHL 17 (418)
T ss_pred chHHHHHHHhCCCC
Confidence 34788877666643
No 42
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=33.86 E-value=14 Score=28.55 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q psy388 65 LALYLATVRVLRKLNVIRLESEK 87 (94)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~ 87 (94)
.++..++..+++++++...+++|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~ 498 (500)
T PF00201_consen 476 LLIIYIIFKICRFVCRKCVKKKK 498 (500)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 33344444556666555444443
No 43
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=33.77 E-value=75 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy388 62 VLLLALYLATVRVL 75 (94)
Q Consensus 62 ~~~~~~~~~~~~~~ 75 (94)
.+..++.+|.|.++
T Consensus 40 fL~~liVRCfrIll 53 (81)
T PF11057_consen 40 FLGLLIVRCFRILL 53 (81)
T ss_pred HHHHHHHHHHHHHc
Confidence 33344445555443
No 44
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=33.55 E-value=40 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLV 62 (94)
Q Consensus 49 ~lDv~~~l~~~~~~ 62 (94)
++||++++++++++
T Consensus 23 lIDVvf~LLiFFmv 36 (141)
T PRK11267 23 FIDVMLVLLIIFMV 36 (141)
T ss_pred HHHHHHHHHHHHHh
Confidence 78998777666544
No 45
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=33.52 E-value=34 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCCcc
Q psy388 16 IEKSIWWIEYVLRHKGVAH 34 (94)
Q Consensus 16 ~d~av~wiE~vir~~g~~~ 34 (94)
.-.+..|+||.+...|...
T Consensus 18 ~~~~~eWLefLve~~G~~~ 36 (99)
T PF04659_consen 18 EIVVFEWLEFLVERVGHNN 36 (99)
T ss_pred HHHHHHHHHHHHHHccccc
Confidence 4467899999999988765
No 46
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.44 E-value=1.4e+02 Score=19.62 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+.+++++.+.+..-+++..+.+
T Consensus 22 L~~f~~kpi~~~l~~R~~~I~~ 43 (159)
T PRK13461 22 LKHFFFDKIKAVIDSRQSEIDN 43 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555565555555554443
No 47
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=33.33 E-value=22 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.528 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCcc
Q psy388 10 DTPMSPIEKSIWWIEYVLRHKGVAH 34 (94)
Q Consensus 10 drP~~P~d~av~wiE~vir~~g~~~ 34 (94)
|||.+|....-.--.|-+||.|..|
T Consensus 42 ~rp~sp~ttvwtvsqf~arh~gg~h 66 (147)
T PF14756_consen 42 NRPASPVTTVWTVSQFFARHRGGEH 66 (147)
T ss_pred CCCCCcccceeeHHHHHHHhcCCCC
Confidence 7888988754333458889988766
No 48
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=32.83 E-value=1.5e+02 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy388 62 VLLLALYLATVRVLRKLNVIRLESEKDIKKK 92 (94)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (94)
-++.+++.+.+++++-+.+..-+++.++.+.
T Consensus 14 nFlILv~lL~~fl~kPi~~~l~eR~~~I~~~ 44 (250)
T PRK14474 14 NFLILVYLLRRFLYKPIIQVMKKRQQRIANR 44 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677777777766666666543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=32.53 E-value=1.3e+02 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHhcCCCcc--ccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 26 VLRHKGVAH--LHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLR 76 (94)
Q Consensus 26 vir~~g~~~--l~~~~~~l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~ 76 (94)
+..++|-=. ..+...++|..- .+++++++++.+++++++++.+++
T Consensus 21 ~~~~~Gyv~i~~~~~~ie~s~~~------~~~~~~~~~~~~~~~~~l~~~~~~ 67 (409)
T TIGR00540 21 IAGHQGYVLIETANRIIEMSITG------LAIFFIIALAIIFAFEWGLRRFFR 67 (409)
T ss_pred HcCCCCeEEEEECCEEEEeeHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555221 234445655543 333333333444445555555543
No 50
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=32.41 E-value=74 Score=16.01 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=18.5
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHH
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYVL 27 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~vi 27 (94)
...+.+++|-+|.+-+..|.+=..
T Consensus 11 ~~~vl~~qP~d~~~f~~~yF~kL~ 34 (38)
T smart00394 11 TVEVLRAQPSDLVQFAADYFEKLE 34 (38)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHH
Confidence 456788999999998888876443
No 51
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.73 E-value=1.2e+02 Score=18.18 Aligned_cols=26 Identities=4% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 51 DVIAFIITILLVLLLALYLATVRVLR 76 (94)
Q Consensus 51 Dv~~~l~~~~~~~~~~~~~~~~~~~~ 76 (94)
+++++.++++++++..++.++-+..+
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555655554433
No 52
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=30.63 E-value=52 Score=20.81 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLV 62 (94)
Q Consensus 49 ~lDv~~~l~~~~~~ 62 (94)
++||++++++++++
T Consensus 9 lIDVvflLLiFFmv 22 (122)
T TIGR02803 9 FIDVMLVLLIIFMV 22 (122)
T ss_pred HHHHHHHHHHHHHH
Confidence 67998777666554
No 53
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=30.43 E-value=24 Score=29.75 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy388 53 IAFIITILLVLLLALYLATVRVLRKLNVIR 82 (94)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (94)
+++++++++-++.+++.++| ++++|-+.+
T Consensus 99 i~ll~~il~P~vg~~fCcCR-Cc~~CGg~~ 127 (806)
T PF05478_consen 99 IGLLFIILMPLVGLCFCCCR-CCGNCGGRM 127 (806)
T ss_pred HHHHHHHHHHHHHHHHhccc-cCCCcCCcc
Confidence 33333333333333333333 355554444
No 54
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.37 E-value=1.8e+02 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q psy388 70 ATVRVLRKLNVIRLESEKDIK 90 (94)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ 90 (94)
+.+++++.+.+..-+++..+.
T Consensus 35 L~~~l~kpi~~~l~~R~~~I~ 55 (175)
T PRK14472 35 LKKIAWGPILSALEEREKGIQ 55 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555444444443
No 55
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=29.06 E-value=97 Score=16.32 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=4.1
Q ss_pred ccHHHHHHH
Q psy388 42 LSYVQYYLL 50 (94)
Q Consensus 42 l~~~qy~~l 50 (94)
+..+.+|..
T Consensus 4 ltl~dfylc 12 (43)
T PF11395_consen 4 LTLFDFYLC 12 (43)
T ss_pred eehhHHHHH
Confidence 444555443
No 56
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.98 E-value=1.7e+02 Score=19.10 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy388 66 ALYLATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+.+.+-+++++.+.+..-.++..+..
T Consensus 20 l~~~l~kfl~kPi~~~l~~R~~~I~~ 45 (141)
T PRK08476 20 LIVILNSWLYKPLLKFMDNRNASIKN 45 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444466677776665555555443
No 57
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=28.96 E-value=50 Score=21.82 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcC
Q psy388 16 IEKSIWWIEYVLRHK 30 (94)
Q Consensus 16 ~d~av~wiE~vir~~ 30 (94)
.+.|..|.+|+++||
T Consensus 64 ~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 64 FDGALDIAEYAIEHG 78 (132)
T ss_pred HHHHHHHHHHHHHcC
Confidence 578999999999996
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.39 E-value=1.8e+02 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 53 IAFIITILLVLLLALYLATVRVLR 76 (94)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~~~~~~~ 76 (94)
.+++++++++.+++++++++.+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PRK10747 44 LAIILILAMVVLFAIEWLLRRIFR 67 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444455566655554
No 59
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=28.39 E-value=43 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhcCCCcc---c-cccccCccH
Q psy388 14 SPIEKSIWWIEYVLRHKGVAH---L-HSAAADLSY 44 (94)
Q Consensus 14 ~P~d~av~wiE~vir~~g~~~---l-~~~~~~l~~ 44 (94)
..+|.|..|+||+ .|+|... + +.++.+-||
T Consensus 130 rgvd~ar~~vEY~-n~pggtywsdlR~~~G~~~P~ 163 (501)
T COG3534 130 RGVDEARNWVEYC-NHPGGTYWSDLRRENGREEPW 163 (501)
T ss_pred ccHHHHHHHHHHc-cCCCCChhHHHHHhcCCCCCc
Confidence 4578999999998 5665543 3 455555555
No 60
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=27.63 E-value=62 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLVL 63 (94)
Q Consensus 49 ~lDv~~~l~~~~~~~ 63 (94)
++||++++++++++.
T Consensus 21 lIDVmLVLLiiFmvt 35 (137)
T COG0848 21 LIDVMLVLLIIFMVT 35 (137)
T ss_pred HHHHHHHHHHHHHHh
Confidence 679988777665543
No 61
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.61 E-value=1.6e+02 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh
Q psy388 68 YLATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
+.+-+++++.+.+..-.++.++.+
T Consensus 37 ~lL~k~l~~Pi~~~l~~R~~~I~~ 60 (156)
T CHL00118 37 VLLNIILYKPLLKVLDERKEYIRK 60 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666665555555544
No 62
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=27.47 E-value=96 Score=15.85 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=15.1
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHH
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYV 26 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~v 26 (94)
...+++++|.++.+=+..|-+-.
T Consensus 11 ~~~vl~~qP~Di~~F~a~yF~~L 33 (38)
T PF02197_consen 11 TREVLREQPDDILQFAADYFEKL 33 (38)
T ss_dssp HHHHHHH--S-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHH
Confidence 46788999999998888776544
No 63
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=26.38 E-value=88 Score=14.97 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy388 47 YYLLDVIAFIITILLVL 63 (94)
Q Consensus 47 y~~lDv~~~l~~~~~~~ 63 (94)
.+..|+.++..+++.++
T Consensus 6 ~w~~~i~al~~lv~~iT 22 (27)
T PF03929_consen 6 KWFGDIFALFMLVFAIT 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36677777655544443
No 64
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.35 E-value=1.8e+02 Score=20.04 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=4.6
Q ss_pred cHHHHHHHHH
Q psy388 43 SYVQYYLLDV 52 (94)
Q Consensus 43 ~~~qy~~lDv 52 (94)
+|+.-++.-+
T Consensus 25 sffsthm~tI 34 (189)
T PF05568_consen 25 SFFSTHMYTI 34 (189)
T ss_pred cHHHHHHHHH
Confidence 4555554433
No 65
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=25.64 E-value=1.1e+02 Score=18.96 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy388 48 YLLDVIAFIITILLVLLLA 66 (94)
Q Consensus 48 ~~lDv~~~l~~~~~~~~~~ 66 (94)
+++|+.+++.+.+++.+..
T Consensus 6 NL~Dv~LVfav~llvalv~ 24 (92)
T PF09919_consen 6 NLFDVMLVFAVGLLVALVM 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789987766665555443
No 66
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.41 E-value=1.6e+02 Score=17.59 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 52 VIAFIITILLVLLLALYLATVRVL 75 (94)
Q Consensus 52 v~~~l~~~~~~~~~~~~~~~~~~~ 75 (94)
++++.++++++++..++.++.+.-
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~ 28 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444555555555443
No 67
>PF14770 TMEM18: Transmembrane protein 18
Probab=24.88 E-value=1.1e+02 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCCccccccc
Q psy388 19 SIWWIEYVLRHKGVAHLHSAA 39 (94)
Q Consensus 19 av~wiE~vir~~g~~~l~~~~ 39 (94)
.++-.|++-+.++ .|-++-+
T Consensus 51 ~v~~aE~iN~~~a-~nW~~Fs 70 (123)
T PF14770_consen 51 LVYCAEYINEYAA-RNWRSFS 70 (123)
T ss_pred HHHHHHHHHHHHH-HHHHHHh
Confidence 4566666655532 3344443
No 68
>PF06709 DUF1196: Protein of unknown function (DUF1196); InterPro: IPR009585 This family consists of several hypothetical bacterial proteins of around 51 residues in length which seem to be specific to Vibrio cholerae. The function of this family is unknown.
Probab=24.69 E-value=1.1e+02 Score=16.87 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=10.0
Q ss_pred HHHHhhhhhhhhhhhhhh
Q psy388 74 VLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~ 91 (94)
..+.+|+..+.++..+|.
T Consensus 19 ~FK~v~KGI~~K~hSIK~ 36 (51)
T PF06709_consen 19 PFKGVAKGIYAKQHSIKQ 36 (51)
T ss_pred hHHHHHHHHHHhhhhHHH
Confidence 345555666666555553
No 69
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=24.31 E-value=2.5e+02 Score=19.96 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh
Q psy388 67 LYLATVRVLRKLNVIRLESEKDIKK 91 (94)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (94)
.+.+.+++++.+.+..-.++..+..
T Consensus 19 ~~lL~kfl~kPi~~~l~~R~~~I~~ 43 (246)
T TIGR03321 19 VWLLKRFLYRPILDAMDAREKKIAG 43 (246)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444456666666665555555544
No 70
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.01 E-value=1.3e+02 Score=16.04 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q psy388 44 YVQYYLLDVIAF 55 (94)
Q Consensus 44 ~~qy~~lDv~~~ 55 (94)
|.+.+.-|+-+.
T Consensus 3 w~~LF~s~vGL~ 14 (42)
T PF11346_consen 3 WKDLFGSDVGLM 14 (42)
T ss_pred HHHHhcChHHHH
Confidence 344445555443
No 71
>PF14043 WVELL: WVELL protein
Probab=23.66 E-value=82 Score=19.00 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=14.4
Q ss_pred HhhcCCCCHHHHHHHHHHHH
Q psy388 7 LSKDTPMSPIEKSIWWIEYV 26 (94)
Q Consensus 7 ~~~drP~~P~d~av~wiE~v 26 (94)
++...|+=+.+.|.+|||-.
T Consensus 11 LlekN~~Ls~~qArtWVElL 30 (75)
T PF14043_consen 11 LLEKNPMLSYEQARTWVELL 30 (75)
T ss_pred HHHhCCCCCHHHHHHHHHHH
Confidence 44455666678899999964
No 72
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=23.34 E-value=2.3e+02 Score=19.95 Aligned_cols=29 Identities=14% Similarity=-0.014 Sum_probs=19.3
Q ss_pred CCCccccccccCccHHHHHHHHHHHHHHH
Q psy388 30 KGVAHLHSAAADLSYVQYYLLDVIAFIIT 58 (94)
Q Consensus 30 ~g~~~l~~~~~~l~~~qy~~lDv~~~l~~ 58 (94)
++.+..+|.-..++.+|++.+--..++++
T Consensus 50 dl~~~~q~s~F~Lsr~eR~vlF~~ClLGa 78 (201)
T COG5102 50 DLEHYFQSSEFGLSRFERAVLFSACLLGA 78 (201)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHhhh
Confidence 33344677778889999988875444443
No 73
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=23.32 E-value=1.8e+02 Score=17.45 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=27.1
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHHhcCCCcc
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYVLRHKGVAH 34 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~vir~~g~~~ 34 (94)
...++.+--++|-+..--.++++++++|.|.
T Consensus 17 a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF 47 (83)
T TIGR02384 17 AYAVFEELGLTPSTAIRMFLKQVIREQGLPF 47 (83)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC
Confidence 4567788889999999999999999999885
No 74
>COG5547 Small integral membrane protein [Function unknown]
Probab=23.25 E-value=1.6e+02 Score=16.96 Aligned_cols=20 Identities=10% Similarity=0.429 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy388 43 SYVQYYLLDVIAFIITILLV 62 (94)
Q Consensus 43 ~~~qy~~lDv~~~l~~~~~~ 62 (94)
.|++-+-.-+++.+..+++.
T Consensus 2 eflk~fkypIIgglvglliA 21 (62)
T COG5547 2 EFLKKFKYPIIGGLVGLLIA 21 (62)
T ss_pred cHHHHhccchHHHHHHHHHH
Confidence 45555555555544433333
No 75
>KOG3814|consensus
Probab=23.18 E-value=62 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCCCc
Q psy388 7 LSKDTPMSPIEKSIWWIEYVLRHKGVA 33 (94)
Q Consensus 7 ~~~drP~~P~d~av~wiE~vir~~g~~ 33 (94)
.-|.||..|.+....++|+.+.|+-.+
T Consensus 418 tTrqQ~rHt~esil~Hle~Clt~~lsp 444 (531)
T KOG3814|consen 418 TTRQQPRHTMESILQHLEFCLTHDLSP 444 (531)
T ss_pred HhhcCCCCcHHHHHHHHHHHHhcCCCH
Confidence 446899999999999999999996443
No 76
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=22.99 E-value=1.8e+02 Score=22.30 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy388 16 IEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNV 80 (94)
Q Consensus 16 ~d~av~wiE~vir~~g~~~l~~~~~~l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (94)
..++-.|++- ++||+-+.-+.- -.||+-.+.++|+.++.+ +++++.++|-+-..++..+.|
T Consensus 256 wsrl~~Wla~--~~P~~~y~lttP-LfSfFGlfDInv~gviii-l~ii~l~IF~vnSkLlWFLaG 316 (323)
T PHA02688 256 WSRLGTWLAK--RYPGFYYFLTTP-LFSFFGLFDINVIGVIII-LFIIVLLIFDVNSKLLWFLAG 316 (323)
T ss_pred HHHHHHHHHh--hCCchheeecch-HHHhhccchhHHHHHHHH-HHHHHHHHhcCCchHHHHHHH
Confidence 3456677654 778886543221 345666666666543333 233333344333333333333
No 77
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=22.65 E-value=1.2e+02 Score=18.24 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q psy388 50 LDVIAFIITILLVL 63 (94)
Q Consensus 50 lDv~~~l~~~~~~~ 63 (94)
.|=+.+.+++.+++
T Consensus 68 ~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 68 TDRILIFFAFLFFL 81 (92)
T ss_pred HhHHHHHHHHHHHH
Confidence 35554444443333
No 78
>KOG4433|consensus
Probab=22.59 E-value=3.6e+02 Score=22.03 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCCc--------cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy388 15 PIEKSIWWIEYVLRHKGVA--------HLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNVIR 82 (94)
Q Consensus 15 P~d~av~wiE~vir~~g~~--------~l~~~~~~l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (94)
|.-.|-||+.+.-..|..+ .++++ +-.+.| - |=+.+-+.+ ....+.+++.++..+++||++..
T Consensus 4 ~~y~a~~~v~~lh~lP~~~~~~~~tns~F~pe--~~~Y~Q-a-L~lla~l~a-a~l~l~Ll~ll~yli~~cC~Rr~ 74 (526)
T KOG4433|consen 4 VMYFAPWWVNLLHVLPHLNFKLHPTNSVFRPE--DSEYQQ-A-LLLLAALAA-ACLGLSLLFLLFYLICRCCCRRE 74 (526)
T ss_pred ccccchhHHHHhhcCCCCCceEeeccccCCCC--cHHHHH-H-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456778998876666443 25555 222333 2 212221111 12233455666677778877653
No 79
>PF14979 TMEM52: Transmembrane 52
Probab=22.46 E-value=1.8e+02 Score=19.91 Aligned_cols=7 Identities=0% Similarity=-0.391 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy388 66 ALYLATV 72 (94)
Q Consensus 66 ~~~~~~~ 72 (94)
+...++|
T Consensus 37 ~ta~C~r 43 (154)
T PF14979_consen 37 LTASCVR 43 (154)
T ss_pred HHHHHHH
Confidence 3333444
No 80
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=22.36 E-value=1.7e+02 Score=16.71 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=11.2
Q ss_pred CccHHHHHHHHHHHHHHHHHH
Q psy388 41 DLSYVQYYLLDVIAFIITILL 61 (94)
Q Consensus 41 ~l~~~qy~~lDv~~~l~~~~~ 61 (94)
+.+.|..=.-|+..+++-+++
T Consensus 18 ~~~~Y~~G~~D~~fV~fy~i~ 38 (65)
T PF08390_consen 18 GTGLYGKGWDDLYFVFFYIIV 38 (65)
T ss_pred CCCccccCcchHHHHHHHHHH
Confidence 334455555677765554433
No 81
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.11 E-value=68 Score=18.90 Aligned_cols=19 Identities=5% Similarity=-0.251 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q psy388 67 LYLATVRVLRKLNVIRLES 85 (94)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (94)
.-.++...+++....+.++
T Consensus 30 GnyvlY~Yaqk~lpp~kkk 48 (69)
T PF04689_consen 30 GNYVLYVYAQKTLPPKKKK 48 (69)
T ss_pred HHHHHHHHHhhcCCCCCCC
Confidence 3444555566665554443
No 82
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.10 E-value=3e+02 Score=21.41 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy388 65 LALYLATVRVLRKLNVI 81 (94)
Q Consensus 65 ~~~~~~~~~~~~~~~~~ 81 (94)
.+++.++..+++|||+.
T Consensus 33 ~Ll~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 33 SLLFLLIYLICRCCCRR 49 (406)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 34455566666776665
No 83
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=22.04 E-value=3e+02 Score=19.67 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=31.1
Q ss_pred cCCC--CHHHHHHHHHHHHHhcCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy388 10 DTPM--SPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNV 80 (94)
Q Consensus 10 drP~--~P~d~av~wiE~vir~~g~~~l~~~~~~l~~~qy~~lDv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (94)
++|. +-+|.-+.-.|..++-...|-+|-.-...+-+- +=++. .+++.++-+.++++..+.||.|.
T Consensus 43 e~~~sdse~Dd~vd~lE~~ve~~~~pl~rr~ygkvg~Ii---~mI~s---flfFGifkl~lKmfYhLfrcV~C 109 (214)
T PF06837_consen 43 ERPLSDSELDDKVDKLETDVEDKVDPLVRRKYGKVGHII---WMIFS---FLFFGIFKLTLKMFYHLFRCVCC 109 (214)
T ss_pred cccCcchhHHHHHHHHhhhHHhCCCHHHHhhccCcceee---hHHHH---HHHHHHHHHHHHHHHHHHhhhhc
Confidence 4453 455777788888776655454433222222111 11122 22233444555666666665444
No 84
>PHA02851 EEV glycoprotein; Provisional
Probab=21.90 E-value=1.2e+02 Score=21.23 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=6.6
Q ss_pred HHHHhhhhhhhh
Q psy388 74 VLRKLNVIRLES 85 (94)
Q Consensus 74 ~~~~~~~~~~~~ 85 (94)
++++-|++++++
T Consensus 22 IcKk~cKKFFkK 33 (223)
T PHA02851 22 INKKYCKKFFKK 33 (223)
T ss_pred HhHHHHHHHHhc
Confidence 455555555554
No 85
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=21.74 E-value=71 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=27.1
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHHhcCCCccccccccCccHHHHH
Q psy388 3 YYSLLSKDTPMSPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYY 48 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~wiE~vir~~g~~~l~~~~~~l~~~qy~ 48 (94)
++-.+.+.--++|.|.+..|.-|.+.++.- .+.....++.-|+.+
T Consensus 14 kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~ 58 (253)
T PF08418_consen 14 KLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQY 58 (253)
T ss_dssp HHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHH
Confidence 456677777889999999999999999644 333333344334433
No 86
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.30 E-value=2.6e+02 Score=19.84 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=19.9
Q ss_pred ccHHHHHHH-HHHH-HHHHH--HHHHHHHHHHHHHHHHHHhhhhhh
Q psy388 42 LSYVQYYLL-DVIA-FIITI--LLVLLLALYLATVRVLRKLNVIRL 83 (94)
Q Consensus 42 l~~~qy~~l-Dv~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 83 (94)
+.|.+-+++ |+++ |.+.+ .+++..++|.++.++.|+-..+.+
T Consensus 10 ~~~~~~f~~~~lIlaF~vSm~iGLviG~li~~LltwlSRRRASa~I 55 (197)
T PF15179_consen 10 LEWLENFDWEDLILAFCVSMAIGLVIGALIWALLTWLSRRRASARI 55 (197)
T ss_pred ccchhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 455565533 3332 33222 223344556666666665544433
No 87
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.99 E-value=1.7e+02 Score=17.20 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy388 44 YVQYYLLDVIA 54 (94)
Q Consensus 44 ~~qy~~lDv~~ 54 (94)
|++.+-+=+++
T Consensus 62 ~~~~~k~~~i~ 72 (89)
T PF00957_consen 62 WWRNYKLYIII 72 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhH
Confidence 55555444443
No 88
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=20.81 E-value=1.7e+02 Score=17.22 Aligned_cols=32 Identities=6% Similarity=0.183 Sum_probs=24.7
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHHhcCCCcc
Q psy388 3 YYSLLSKDTPMSPIEKSIWWIEYVLRHKGVAH 34 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~wiE~vir~~g~~~ 34 (94)
+...++.+..+++-+..--...++++++|.|.
T Consensus 15 ~a~~il~~~Glt~s~ai~~fl~qiv~~~~iPF 46 (83)
T PF04221_consen 15 EAEAILEELGLTLSDAINMFLKQIVREGGIPF 46 (83)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHSS-S-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCc
Confidence 35678888999999999999999999999885
No 89
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=20.57 E-value=2e+02 Score=19.94 Aligned_cols=9 Identities=22% Similarity=0.903 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy388 44 YVQYYLLDV 52 (94)
Q Consensus 44 ~~qy~~lDv 52 (94)
+.++.+.+.
T Consensus 79 ~~~~~~i~~ 87 (199)
T PF04276_consen 79 YIDYFNIQS 87 (199)
T ss_pred HHHhccchh
Confidence 344444444
No 90
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.13 E-value=3e+02 Score=18.96 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy388 46 QYYLLDVIAFIITI 59 (94)
Q Consensus 46 qy~~lDv~~~l~~~ 59 (94)
.+++-..+.+++.+
T Consensus 25 sffsthm~tILiaI 38 (189)
T PF05568_consen 25 SFFSTHMYTILIAI 38 (189)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444433
Done!