Query psy388
Match_columns 94
No_of_seqs 125 out of 1027
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:44:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iir_A Glycosyltransferase GTF 80.1 0.72 2.5E-05 33.3 1.7 26 11-36 383-408 (415)
2 2jp3_A FXYD domain-containing 64.4 14 0.00049 21.0 4.3 26 44-69 11-36 (67)
3 1rrv_A Glycosyltransferase GTF 64.2 1.9 6.7E-05 30.9 0.7 23 13-36 386-409 (416)
4 2hac_A T-cell surface glycopro 61.7 12 0.00042 18.3 3.2 19 47-65 5-23 (33)
5 2jo1_A Phospholemman; FXYD1, N 58.3 23 0.00079 20.4 4.5 25 44-68 10-34 (72)
6 2zxe_G FXYD10, phospholemman-l 51.3 8.3 0.00029 22.4 1.8 25 44-68 13-37 (74)
7 2izx_A CAMP-dependent protein 33.8 46 0.0016 16.3 3.2 25 4-28 15-39 (41)
8 4f9k_A CAMP-dependent protein 31.6 52 0.0018 19.9 3.2 26 4-29 57-82 (95)
9 3g36_A Protein DPY-30 homolog; 30.9 44 0.0015 18.0 2.6 24 3-29 24-47 (55)
10 2k21_A Potassium voltage-gated 30.8 1.1E+02 0.0037 19.6 5.5 32 18-49 22-55 (138)
11 3h4t_A Glycosyltransferase GTF 29.8 26 0.00088 25.0 2.0 26 3-31 360-385 (404)
12 1pi7_A VPU protein, U ORF prot 29.7 57 0.0019 16.1 4.5 15 49-64 3-17 (36)
13 2kyg_A CAMP-dependent protein 29.7 63 0.0022 16.7 3.4 25 4-28 23-47 (50)
14 2kog_A Vesicle-associated memb 23.5 99 0.0034 19.0 3.6 26 16-41 46-72 (119)
15 2gmg_A Hypothetical protein PF 23.5 62 0.0021 19.8 2.6 27 3-29 29-55 (105)
No 1
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=80.06 E-value=0.72 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccc
Q psy388 11 TPMSPIEKSIWWIEYVLRHKGVAHLH 36 (94)
Q Consensus 11 rP~~P~d~av~wiE~vir~~g~~~l~ 36 (94)
++.++.+.+++|+|.+++++|++|+-
T Consensus 383 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 408 (415)
T 1iir_A 383 RTDGAAVAARLLLDAVSREKPTVSAL 408 (415)
T ss_dssp CSCHHHHHHHHHHHHHHTC-------
T ss_pred hhcChHHHHHHHHHHHHhcccHHHHh
Confidence 35788999999999999999998864
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=64.40 E-value=14 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 44 YVQYYLLDVIAFIITILLVLLLALYL 69 (94)
Q Consensus 44 ~~qy~~lDv~~~l~~~~~~~~~~~~~ 69 (94)
+|.|..|-+-+++++.+++++.++..
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHheecchhhHHHHHHHHHHHH
Confidence 47889999988877776666555443
No 3
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=64.18 E-value=1.9 Score=30.95 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=13.0
Q ss_pred CCHHHHHHHHH-HHHHhcCCCcccc
Q psy388 13 MSPIEKSIWWI-EYVLRHKGVAHLH 36 (94)
Q Consensus 13 ~~P~d~av~wi-E~vir~~g~~~l~ 36 (94)
.++. .+++|+ |++++++|++|+-
T Consensus 386 ~~~~-~~~~~i~e~~~~~~~~~~~~ 409 (416)
T 1rrv_A 386 DGAA-AAADLVLAAVGREKPAVPAL 409 (416)
T ss_dssp CHHH-HHHHHHHHHHHC--------
T ss_pred cCcH-HHHHHHHHHHhccCCCCcch
Confidence 4566 899999 9999999998853
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=61.66 E-value=12 Score=18.33 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy388 47 YYLLDVIAFIITILLVLLL 65 (94)
Q Consensus 47 y~~lDv~~~l~~~~~~~~~ 65 (94)
.|.||.++++-.++++.++
T Consensus 5 CYiLDgiL~iYgii~T~Ly 23 (33)
T 2hac_A 5 CYLLDGILFIYGVILTALF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHH
Confidence 5788998777666555443
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=58.25 E-value=23 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 44 YVQYYLLDVIAFIITILLVLLLALY 68 (94)
Q Consensus 44 ~~qy~~lDv~~~l~~~~~~~~~~~~ 68 (94)
+|.|..|-+-.++++.+++++.++.
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~i 34 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILI 34 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHH
Confidence 4678889888877776666555444
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=51.31 E-value=8.3 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy388 44 YVQYYLLDVIAFIITILLVLLLALY 68 (94)
Q Consensus 44 ~~qy~~lDv~~~l~~~~~~~~~~~~ 68 (94)
.|.|..|-+-++++..+++++.++.
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIII 37 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHheeccchhHHHHHHHHHHH
Confidence 3678999998887776666554443
No 7
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=33.79 E-value=46 Score=16.29 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=18.6
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHHh
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYVLR 28 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~vir 28 (94)
...++++||.++.+=+..|-+-..+
T Consensus 15 ~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 15 TVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 4567889999988888877765443
No 8
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=31.59 E-value=52 Score=19.87 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.8
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHHhc
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYVLRH 29 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~vir~ 29 (94)
+..++++||-+|.+=|+.+.+-..+.
T Consensus 57 tv~Ll~~RPeDPv~FLaeYF~kL~~~ 82 (95)
T 4f9k_A 57 IVHLCISKPERPMKFLREHFEKLEKE 82 (95)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45678899999999999888765443
No 9
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=30.89 E-value=44 Score=17.98 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=16.8
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHHhc
Q psy388 3 YYSLLSKDTPMSPIEKSIWWIEYVLRH 29 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~wiE~vir~ 29 (94)
-+..+-+.||.+|.+-.. ||.++|
T Consensus 24 GL~~lak~rP~DPi~~LA---~~Ll~~ 47 (55)
T 3g36_A 24 GMAVLAKERPPNPIEFLA---SYLLKN 47 (55)
T ss_dssp HHHHHHHHCCSCHHHHHH---HHHHHH
T ss_pred HHHHHHHhCCCCHHHHHH---HHHHHh
Confidence 466778899999988444 445555
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=30.75 E-value=1.1e+02 Score=19.63 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCccc--cccccCccHHHHHH
Q psy388 18 KSIWWIEYVLRHKGVAHL--HSAAADLSYVQYYL 49 (94)
Q Consensus 18 ~av~wiE~vir~~g~~~l--~~~~~~l~~~qy~~ 49 (94)
..--|-|++-+-++++-| |.++.+-+=+.|..
T Consensus 22 L~~l~~e~~~~g~n~S~la~r~~~~~~~~~~ylY 55 (138)
T 2k21_A 22 LTKLWQETVQQGGNMSGLARRSPRSGDGKLEALY 55 (138)
T ss_dssp HHHHHHHHHHTCCTTSSGGGSCSCCTTCSSTTCH
T ss_pred HHHHHHHHHhcCCCCCCccccCCCCCCCCceeeh
Confidence 456799999866555443 33333333334433
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=29.80 E-value=26 Score=25.02 Aligned_cols=26 Identities=0% Similarity=-0.167 Sum_probs=19.0
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHHhcCC
Q psy388 3 YYSLLSKDTPMSPIEKSIWWIEYVLRHKG 31 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~wiE~vir~~g 31 (94)
+++..+++ ++.+.+++|+|.+++.+.
T Consensus 360 ~~~~~~~~---~~~~~~~~~i~~~~~~~~ 385 (404)
T 3h4t_A 360 AVAGTIRT---DGTTVAAKLLLEAISRQR 385 (404)
T ss_dssp HHHTTCCC---CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhh---hHHHHHHHHHHHHHhhCC
Confidence 44555555 799999999999998753
No 12
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=29.70 E-value=57 Score=16.13 Aligned_cols=15 Identities=7% Similarity=0.474 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy388 49 LLDVIAFIITILLVLL 64 (94)
Q Consensus 49 ~lDv~~~l~~~~~~~~ 64 (94)
.+|+ ++..++..+++
T Consensus 3 ~l~i-~ivalivalIi 17 (36)
T 1pi7_A 3 PIQI-AIVALVVAIII 17 (36)
T ss_pred hhhh-HHHHHHHHHHH
Confidence 3555 44444333333
No 13
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=29.69 E-value=63 Score=16.67 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=18.8
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHHh
Q psy388 4 YSLLSKDTPMSPIEKSIWWIEYVLR 28 (94)
Q Consensus 4 ls~~~~drP~~P~d~av~wiE~vir 28 (94)
...++++||.++.+=+..|-+-..+
T Consensus 23 ~~evlr~qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 23 TVEVLRQQPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4567889999988888888775544
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=23.46 E-value=99 Score=19.01 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcCCC-ccccccccC
Q psy388 16 IEKSIWWIEYVLRHKGV-AHLHSAAAD 41 (94)
Q Consensus 16 ~d~av~wiE~vir~~g~-~~l~~~~~~ 41 (94)
.+....-||=+++.|.- +.|...+.+
T Consensus 46 k~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 46 VDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34556677777777632 444444433
No 15
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.46 E-value=62 Score=19.84 Aligned_cols=27 Identities=0% Similarity=-0.178 Sum_probs=17.3
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHHhc
Q psy388 3 YYSLLSKDTPMSPIEKSIWWIEYVLRH 29 (94)
Q Consensus 3 ~ls~~~~drP~~P~d~av~wiE~vir~ 29 (94)
.++.++.-+|.++.|.+...+|++.+.
T Consensus 29 ei~~~l~i~~~~~ke~Vy~hLeHIaks 55 (105)
T 2gmg_A 29 ELARILDMRGKGSKKVILEDLKVISKI 55 (105)
T ss_dssp HHHHSSCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 344444444556666677888888776
Done!