RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy388
(94 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 69.4 bits (170), Expect = 2e-15
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 5 SLLSKDTPMSPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLV 62
S + D P+ P++++++WIE+V+RHKG HL AA DL++ QY+ LDVI F++ +
Sbjct: 420 SSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAHDLTWYQYHSLDVIGFLLACVAT 477
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 49.2 bits (118), Expect = 2e-08
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 10 DTPMSPIEKSIWWIEYVLRHKGVA-HLHSAAADLSYVQYYLLDVIAFIITILL 61
PM+P+ K+IW+ E+V+R+K L + AA++SY Y++ ++ ++T +
Sbjct: 448 HQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSYILVPLVTFTV 500
>gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found
in bacterial cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54),
neopullulanase (NPase; EC 3.2.1.135), and maltogenic
amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of
alpha-(1,4) glycosidic linkages on a number of
substrates including cyclomaltodextrins (CDs), pullulan,
and starch. These enzymes hydrolyze CDs and starch to
maltose and pullulan to panose by cleavage of alpha-1,4
glycosidic bonds whereas alpha-amylases essentially lack
activity on CDs and pullulan. They also catalyze
transglycosylation of oligosaccharides to the C3-, C4-
or C6-hydroxyl groups of various acceptor sugar
molecules. Since these proteins are nearly
indistinguishable from each other, they are referred to
as cyclomaltodextrinases (CMDs). This group of CMDs is
bacterial. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 407
Score = 27.6 bits (62), Expect = 0.81
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 16 IEKSIWWIEY 25
I+ SIWWIEY
Sbjct: 190 IQNSIWWIEY 199
>gnl|CDD|218842 pfam05987, DUF898, Bacterial protein of unknown function (DUF898).
This family consists of several bacterial proteins of
unknown function. Some of the family members are
described as putative membrane proteins.
Length = 339
Score = 27.2 bits (61), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 25 YVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLR 76
V + + H + LS + L + ++T+ L L LAL ATVR+ R
Sbjct: 253 LVWNNTTLDGEHRFRSTLSAGRLVWLYLSNLLLTV-LTLGLALPWATVRLAR 303
>gnl|CDD|232813 TIGR00077, lspA, lipoprotein signal peptidase. Alternate name:
lipoprotein signal peptidase [Protein fate, Protein and
peptide secretion and trafficking].
Length = 166
Score = 26.6 bits (59), Expect = 1.5
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 25 YVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNVI 81
+R+ G A S AD Y+L + I + L L ++L + L K+ I
Sbjct: 51 TYVRNTGAAF--SLLADQGGQVYFL-----KGLAIAISLGLFVFLLRYKELFKITNI 100
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 35 LHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRV 74
+ L ++ I TI++ L++ +YL ++RV
Sbjct: 217 TSGNLTLALLLTTRGLLLLGLITTIVIFLIV-VYLESMRV 255
>gnl|CDD|223857 COG0786, GltS, Na+/glutamate symporter [Amino acid transport and
metabolism].
Length = 404
Score = 26.8 bits (60), Expect = 1.9
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 46 QYYLLDVIAFIITILLVLLLALYL-ATVRVLRKLNV 80
L+ + +I +L+LLL +L ++ L+K +
Sbjct: 1 MEIHLNALETLILAILLLLLGRFLVKKIKFLKKYCI 36
>gnl|CDD|225983 COG3452, COG3452, Predicted periplasmic ligand-binding sensor
domain [Signal transduction mechanisms].
Length = 297
Score = 26.7 bits (59), Expect = 1.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 33 AHLHSAAADLS--YVQYYLLDVIAFIITILLVLLLALYLATV-------RVLRKLNVIRL 83
H H + L YL +I +I +++ + L L V V ++LN+IR
Sbjct: 1 QHKHHRCSSLRRLLKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRT 60
Query: 84 ESEKDIKKKI 93
+ E + I
Sbjct: 61 QLETQLNGNI 70
>gnl|CDD|177170 MTH00108, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 602
Score = 26.4 bits (59), Expect = 2.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 22 WIEYVLRHKGVAHLHSAAADLSYVQ------YYLLDVIAFIITILLVLLL 65
W+E +L K ++ + A+ Q Y+L +F+IT+ L LLL
Sbjct: 557 WLEKILP-KTISLIQMKASTTISNQKGLIKLYFL----SFLITLTLSLLL 601
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 26.2 bits (59), Expect = 2.7
Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 2/24 (8%)
Query: 48 YLLDV-IAFIITI-LLVLLLALYL 69
+LLD+ +AF I + LL+LL+ALY+
Sbjct: 13 FLLDLLLAFNIALSLLILLVALYI 36
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 26.2 bits (58), Expect = 2.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 27 LRHKGVAHLHSAAADLSYVQYYLLDVIAFIITIL--LVLLLALYLAT 71
L G+ L S DL YY L IA TIL L++ A YLA+
Sbjct: 222 LTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYLAS 268
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 26.2 bits (58), Expect = 2.8
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 43 SYVQYYLLDVIAFIITILLV-LLLALYLATVR 73
+Y Q++ D+ ++ ++ +V LLL+L LATV+
Sbjct: 123 AYAQFWFPDLSDWVASLAVVLLLLSLNLATVK 154
>gnl|CDD|221699 pfam12669, P12, Virus attachment protein p12 family. This family
of proteins are related to Virus attachment protein p12
from the African swine fever virus. The family appears
to contain an N-terminal signal peptide followed by a
short cysteine rich region. The cysteine rich region is
extremely variable and it is possible that only the
N-terminal region is homologous.
Length = 52
Score = 24.6 bits (54), Expect = 3.1
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 56 IITILLVLLLALYLATVRVLRK 77
II L++ Y+ + +K
Sbjct: 2 IIIGLIIAAAVAYVLIRKFFKK 23
>gnl|CDD|238576 cd01171, YXKO-related, B.subtilis YXKO protein of unknown function
and related proteins. Based on the conservation of the
ATP binding site, the substrate binding site and the
Mg2+binding site and structural homology this group is a
member of the ribokinase-like superfamily.
Length = 254
Score = 24.9 bits (55), Expect = 6.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 33 AHLHSAAADLSYVQYYLLDVIAFIITILL 61
+LH A DL+ + A ++ +
Sbjct: 226 VYLHGLAGDLAAKKKGAGLTAADLVAEIP 254
>gnl|CDD|222461 pfam13933, HRXXH, Putative peptidase family. This family of
putative peptidases are closely related to the M35
family pfam02102. In this family the metal binding HEXXH
motif is replaced with HRXXH. The exact function of
these proteins is unknown. Members of this family are
found to be fungal allergens.
Length = 244
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 46 QYYLLDVIAFIITI 59
QY+ LDV A+ I +
Sbjct: 223 QYFALDVYAYDIAV 236
>gnl|CDD|221514 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 571 and 1310 amino
acids in length. There are two conserved sequence
motifs: LPA and ELH. EVC2 is implicated in Ellis van
Creveld chondrodysplastic dwarfism in humans. Mutations
in this protein can give rise to this congenital
condition. LIMBIN is a protein which shares around 80%
sequence homology with EVC2 and it is implicated in a
similar condition in bovine chondrodysplastic dwarfism.
Length = 429
Score = 24.8 bits (54), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 52 VIAFIITILLVLLLALYLATVRVLRKLNVIRLESEK 87
V+AF+++I+L LL L R L+ + R S++
Sbjct: 71 VVAFLVSIVLTLLAFFLLGRTRCLQGRMLSRGRSKQ 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.400
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,888,465
Number of extensions: 423503
Number of successful extensions: 1544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 128
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)