RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy388
         (94 letters)



>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
           protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
           2a0l_A
          Length = 223

 Score = 29.9 bits (68), Expect = 0.073
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 23  IEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITILLVLLLALYLATVRVLRKLNVIR 82
            +Y  R       + +     YV+  L ++ A ++   L+ L+  +LA + + R + ++R
Sbjct: 54  ADYAYR------AYKSGDPAGYVKKTLYEIPA-LVPAGLLALIEGHLAGLGLFRLVRLLR 106

Query: 83  L 83
            
Sbjct: 107 F 107


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.079
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 18/88 (20%)

Query: 22  WIEYVLRHKGVAHLHSAA-----ADLS-YVQY----------YLLDVIAFIITILLVLLL 65
           ++E  +RH   A   S +       L  Y  Y           +  ++ F+  I   L+ 
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 66  ALYLATVRV--LRKLNVIRLESEKDIKK 91
           + Y   +R+  + +   I  E+ K +++
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQR 589



 Score = 27.9 bits (61), Expect = 0.54
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 71  TVRVLRKLNVIRLESEKDIKKKIK 94
             +V  K NV RL+    +++ + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALL 145


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 0.62
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 14/85 (16%)

Query: 5   SLLSKDTPMSPIEKSIWWIEYVLRHKGVAHLHSAAADLSYVQYYLLDVIAFIITIL---- 60
              + D P +P E      ++ L +  V+ L   +    + Q   L +  F    L    
Sbjct: 47  GFAADDEPTTPAE---LVGKF-LGY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100

Query: 61  ---LVLLLALYLATVRVLRKLNVIR 82
              L   L L      +++   +I+
Sbjct: 101 IHALAAKL-LQENDTTLVKTKELIK 124



 Score = 24.6 bits (53), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)

Query: 46  QYYLLDV-IAF-IITILLVLLLALYLATVRVL 75
           + YLL + I+  +I    V+ LA Y+ T ++L
Sbjct: 228 KDYLLSIPISCPLIG---VIQLAHYVVTAKLL 256


>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
           glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
           {Streptomyces antibioticus}
          Length = 424

 Score = 24.3 bits (53), Expect = 8.9
 Identities = 3/19 (15%), Positives = 6/19 (31%)

Query: 13  MSPIEKSIWWIEYVLRHKG 31
                 +   +E +L   G
Sbjct: 406 AGGARAAADILEGILAEAG 424


>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
           structural genomics of infec diseases, csgid, alpha-beta
           structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
           subsp} PDB: 3m5w_A*
          Length = 322

 Score = 24.0 bits (53), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 79  NVIRL-ESEKDIKKKIK 94
           N I +  SEK +KK+I 
Sbjct: 199 NTIDIFSSEKTLKKQIS 215


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0828    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,438,438
Number of extensions: 75500
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 28
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)