BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3884
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 21 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
GV+ +K V IC IC EF+ P+ L C HIFCE C+T WF+RE+TCPLCR + D
Sbjct: 360 GVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDH 419
Query: 81 -PAWRDGATSYFVQIF 95
W+DGATS +QI+
Sbjct: 420 INKWKDGATSSHLQIY 435
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 9 KSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ 68
K+ L + GV T + G +C IC EF+ P+ L C H+FCE C+ W DRE+
Sbjct: 358 KALKLLCTSQNYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRER 417
Query: 69 TCPLCRATLVDD-PAWRDGATSYFVQIF 95
TCPLCR+ VD W+DGATS +Q++
Sbjct: 418 TCPLCRSVAVDTLRCWKDGATSAHLQVY 445
>sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2 OS=Homo
sapiens GN=RNFT2 PE=2 SV=2
Length = 444
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 9 KSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ 68
K+ L + GV T + G IC IC EF+ P+ L C H+FCE C+ W DRE+
Sbjct: 357 KALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRER 416
Query: 69 TCPLCRATLVDD-PAWRDGATSYFVQIF 95
TCPLCR+ VD W+DGATS Q++
Sbjct: 417 TCPLCRSVAVDTLRCWKDGATSAHFQVY 444
>sp|Q5RAG4|RNFT2_PONAB RING finger and transmembrane domain-containing protein 2 OS=Pongo
abelii GN=RNFT2 PE=2 SV=1
Length = 444
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 9 KSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ 68
K+ L + GV T + G IC IC EF+ P+ L C H+FCE C+ W DRE+
Sbjct: 357 KALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRER 416
Query: 69 TCPLCRATLVDD-PAWRDGATSYFVQIF 95
TCPL R+ VD W+DGATS Q++
Sbjct: 417 TCPLSRSVAVDTLRCWKDGATSAHFQVY 444
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 21 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
G + + G ICPIC +FK P L C HIFCE C+ +W ++E+TCPLCR + D
Sbjct: 344 GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVITDK 403
Query: 81 -PAWRDGATSYFVQIF 95
W+DGATS +QI+
Sbjct: 404 VHKWKDGATSAHLQIY 419
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 21 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD- 79
GV +K + IC IC EF+ PV L C HIFCE C+T WF+RE+TCPLCR + +
Sbjct: 320 GVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC 379
Query: 80 DPAWRDGATSYFVQIF 95
W+DGATS +Q++
Sbjct: 380 INKWKDGATSSHLQMY 395
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 14 LLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 73
L+ G + TK +C IC EF P+ L C H+FCE C++ WF++E+TCPLC
Sbjct: 334 FLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLC 393
Query: 74 RATLVDDPA--WRDGATSYFVQIF 95
R TL+ + + W+DGATS ++IF
Sbjct: 394 R-TLISNHSHKWKDGATSLQLRIF 416
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 9 KSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ 68
S L G + TK V +C IC EF P+ L C H+FCE C++ WF++E+
Sbjct: 329 NSLRLFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEK 388
Query: 69 TCPLCRATLVDDP-AWRDGATSYFVQIF 95
TCPLCR + + W+DGATS ++IF
Sbjct: 389 TCPLCRTVISNQSHKWKDGATSLQLRIF 416
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 25 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 74
T E L V +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 36 CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82
CP+C +EF+ L CCH+F C+ W + TCPLCRA LV P
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPG 168
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 2 QAAKAWWKSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEF-----KTPVQLTCCHIFC 56
+A K W SF L N+ + ++ CPIC+D+ K ++ C HIF
Sbjct: 85 RAVKEAWDSFEPLSNDQLMDLT------------CPICYDDMNENDEKQATKMPCGHIFG 132
Query: 57 ESCVTKWFDREQTCPLCR 74
++C+ KW + TCPLCR
Sbjct: 133 KNCLQKWLENHCTCPLCR 150
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
+C +CH K PV+L C HIFC+ C+ +W R++TCP CR +
Sbjct: 19 LCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQKTCPCCRKEV 61
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 4 AKAWWKSF---TKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCV 60
A+ WKSF +N I+ TKE L IC IC+ + K+ V C H F C+
Sbjct: 502 AQLGWKSFLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCL 561
Query: 61 TKWFDREQTCPLCRATL 77
KW ++TCPLC L
Sbjct: 562 KKWLYVQETCPLCHCHL 578
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 25 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 74
T E L + +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 25 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 74
T E L +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 25 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 74
T E L + +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 274 TAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
+C +CH K P +L C HIFC+ C+ +W R++TCP CR +
Sbjct: 19 VCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEV 61
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 25 TKETLLGVGCICPICHDEFK---TPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
+ E L + C IC +E +P +L C H+F C+ WF R+QTCP CR +
Sbjct: 281 SAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 24 PTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
P E +G G CP+C +++ ++ QL C H+F +SC+ W ++ +CP+CR +L
Sbjct: 219 PVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 25 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 74
T E L + +C IC +E + + L C HIF SC+ WF R+QTCP CR
Sbjct: 274 TAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 4 AKAWWKSF---TKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCV 60
A+ WKSF +N I+ TKE L IC IC+ + + V C H F C+
Sbjct: 502 AQLGWKSFLLRRDAVNKIKSLPVATKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCL 561
Query: 61 TKWFDREQTCPLCRATL 77
KW ++TCPLC L
Sbjct: 562 KKWLYVQETCPLCHCQL 578
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 4 AKAWWKSF---TKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCV 60
A+ WKSF +N I+ TKE L IC IC+ + + V C H F C+
Sbjct: 502 AQLGWKSFLLRRDAVNKIKSLPVSTKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCL 561
Query: 61 TKWFDREQTCPLCRATL 77
KW ++TCPLC L
Sbjct: 562 KKWLYVQETCPLCHCQL 578
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 20 LGVSPTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRAT 76
L P E +G G CP+C D++ + QL C H+F + C+ W ++ +CP+CR +
Sbjct: 216 LPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKS 275
Query: 77 L 77
L
Sbjct: 276 L 276
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
C IC D +TPV C H FC C+ ++ ++E CPLC A L
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAEL 73
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 9 KSFTKLLNNI-----------QLGVSPTKETLLGVGCICPIC-HDEFKTPVQLTCCHIFC 56
++F K LN++ L T E L IC IC D +L C HIF
Sbjct: 251 RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFH 310
Query: 57 ESCVTKWFDREQTCPLCRATLVDDP 81
+C+ WF R+QTCP CR ++ P
Sbjct: 311 TTCLRSWFQRQQTCPTCRLNILRTP 335
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 4 AKAWWKSF---TKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCV 60
A+ WKSF +N I+ T+E L IC IC+ + K+ V C H F C+
Sbjct: 502 AQLGWKSFLLRRDAVNKIKSLPVATQEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCL 561
Query: 61 TKWFDREQTCPLCRATL 77
KW + TCPLC L
Sbjct: 562 KKWLYVQDTCPLCHCHL 578
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 2 QAAKAWWKSFTKLL--------NNIQLGVSPTKETLLGVGCICPICHDEF---KTPVQLT 50
Q+ +A K+F ++ N Q V E L + C IC +E +P +L
Sbjct: 251 QSVRALHKAFLDVILSRRAINAMNSQFPVVSNDE-LSAMDATCIICREEMTVESSPKRLP 309
Query: 51 CCHIFCESCVTKWFDREQTCPLCRATL 77
C H+F C+ WF R+QTCP CR +
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 24 PTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
P E +G G CP+C D++ + QL C H+F + C+ W ++ +CP+CR +L
Sbjct: 217 PVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78
+C +CH K P +L C HIFC+ C+ +W R+ TCP CR +
Sbjct: 19 LCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVT 62
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
C IC + F V L C H FC C+ W R++ CP+CR +V +
Sbjct: 382 CIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEIVTE 426
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82
CPIC + + P C H +C C+ W ++CP CR L P+
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 2 QAAKAWWKSFTKLLNNIQLG---VSPTKETLLGVGC---ICPICHDEF------------ 43
Q+ + WK + NN QL V+ T E L IC IC DE
Sbjct: 312 QSGTSLWKIWR---NNKQLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNK 368
Query: 44 -KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
K P +L C HI SC+ W +R QTCP+CR + D+
Sbjct: 369 NKKPKRLPCGHILHLSCLKNWMERSQTCPICRLPVFDE 406
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 36 CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82
C +C +EF+ L CCH+F C+ W TCPLCRA L+ P
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPG 194
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWF----DREQTCPLCRATLVDDPAWRDGATSY 90
+C ICHD P+ C H +C C+ WF +E CP CR+ + PA Y
Sbjct: 29 VCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDITTIPALNTTLQQY 88
Query: 91 F 91
Sbjct: 89 L 89
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT--CPLCRATLVD 79
CP+C + FK PV + C H FC SC+ K ++ + + CP CR ++ D
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITD 190
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
C IC + F V L C H FC C+ W R++ CP+CR ++ +
Sbjct: 377 CIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEILSE 421
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
CPIC + + V L+C H+FC +C+ K + TCP+C+
Sbjct: 16 CPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK 54
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 27 ETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
E +G G CP+C +++ ++ QL C H+F C+ W ++ TCP+CR +L
Sbjct: 219 EEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 27 ETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 77
E +G G CP+C +++ ++ QL C H+F C+ W ++ TCP+CR +L
Sbjct: 218 EEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 405 CIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICR 443
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 73
C IC + F V L C H FC+ C+++W +R+ CP+C
Sbjct: 392 CSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT-CPLCR 74
C+CP+C + F PV L C H FC+ C + D+ CPLCR
Sbjct: 24 CVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCR 65
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 23 SPTKETLLGVGCI-CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATL 77
S K +G G + C +C EF+ L CCH+F CV W TCPLCRA L
Sbjct: 121 SEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180
Query: 78 V 78
V
Sbjct: 181 V 181
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 404 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 442
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 403 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 441
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
C IC + F V L C H FC C+++W R+ CP+CR
Sbjct: 405 CIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICR 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,756,219
Number of Sequences: 539616
Number of extensions: 1231626
Number of successful extensions: 4498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 301
Number of HSP's that attempted gapping in prelim test: 3538
Number of HSP's gapped (non-prelim): 1148
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)