Query psy3884
Match_columns 95
No_of_seqs 217 out of 1284
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 19:51:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.8 4.1E-20 1.4E-24 100.1 4.5 66 30-95 5-71 (78)
2 3ztg_A E3 ubiquitin-protein li 99.8 1.3E-19 4.6E-24 100.8 4.1 70 25-94 5-78 (92)
3 2ecw_A Tripartite motif-contai 99.8 5E-19 1.7E-23 96.8 6.0 68 26-93 12-85 (85)
4 2egp_A Tripartite motif-contai 99.8 1.3E-19 4.5E-24 98.1 3.2 66 28-93 7-79 (79)
5 2ecv_A Tripartite motif-contai 99.8 7.1E-19 2.4E-23 96.2 5.3 67 27-93 13-85 (85)
6 2djb_A Polycomb group ring fin 99.8 1.4E-18 4.7E-23 92.8 6.0 60 26-85 8-68 (72)
7 2kr4_A Ubiquitin conjugation f 99.8 3.8E-19 1.3E-23 98.0 3.5 66 29-94 10-75 (85)
8 2ecy_A TNF receptor-associated 99.7 3.2E-18 1.1E-22 89.9 5.4 54 29-82 11-65 (66)
9 1wgm_A Ubiquitin conjugation f 99.7 2.1E-18 7.1E-23 97.3 4.7 66 29-94 18-84 (98)
10 2kre_A Ubiquitin conjugation f 99.7 1.7E-18 5.8E-23 98.0 4.2 66 29-94 25-90 (100)
11 2yur_A Retinoblastoma-binding 99.7 3.8E-18 1.3E-22 91.6 5.1 57 26-82 8-67 (74)
12 2csy_A Zinc finger protein 183 99.7 3E-18 1E-22 93.3 4.7 52 27-78 9-60 (81)
13 2y43_A E3 ubiquitin-protein li 99.7 4.1E-19 1.4E-23 100.1 0.9 64 31-94 20-84 (99)
14 3lrq_A E3 ubiquitin-protein li 99.7 8.6E-19 2.9E-23 99.1 2.1 64 30-93 19-84 (100)
15 2d8t_A Dactylidin, ring finger 99.7 2.7E-18 9.2E-23 91.4 3.3 52 30-81 12-63 (71)
16 3fl2_A E3 ubiquitin-protein li 99.7 2.3E-18 8E-23 100.6 3.0 63 31-93 50-114 (124)
17 2ysl_A Tripartite motif-contai 99.7 1.7E-17 5.9E-22 88.5 5.9 54 28-81 15-71 (73)
18 3ng2_A RNF4, snurf, ring finge 99.7 5E-18 1.7E-22 90.1 3.0 53 31-83 8-67 (71)
19 2ect_A Ring finger protein 126 99.7 2.1E-17 7.3E-22 89.3 5.5 60 26-85 8-70 (78)
20 4ayc_A E3 ubiquitin-protein li 99.7 2.4E-18 8.3E-23 102.2 1.8 50 31-80 51-100 (138)
21 2ea6_A Ring finger protein 4; 99.7 8.2E-18 2.8E-22 88.7 3.6 52 28-79 10-68 (69)
22 2ckl_A Polycomb group ring fin 99.7 6.8E-18 2.3E-22 96.5 3.0 63 30-92 12-79 (108)
23 2ct2_A Tripartite motif protei 99.7 3.4E-17 1.2E-21 90.1 5.6 55 27-81 9-70 (88)
24 1jm7_A BRCA1, breast cancer ty 99.7 2E-17 6.8E-22 94.8 4.3 62 32-93 20-84 (112)
25 3hct_A TNF receptor-associated 99.7 1.2E-17 4.2E-22 96.8 3.1 67 27-93 12-79 (118)
26 1z6u_A NP95-like ring finger p 99.7 1.3E-17 4.5E-22 100.4 3.0 64 31-94 76-141 (150)
27 2l0b_A E3 ubiquitin-protein li 99.7 5.9E-17 2E-21 90.1 4.5 49 31-79 38-89 (91)
28 2xeu_A Ring finger protein 4; 99.7 1.8E-17 6.1E-22 86.2 2.3 52 32-83 2-60 (64)
29 2kiz_A E3 ubiquitin-protein li 99.7 1.1E-16 3.6E-21 84.6 5.2 52 29-80 10-64 (69)
30 2c2l_A CHIP, carboxy terminus 99.7 4.2E-17 1.5E-21 105.6 4.4 66 29-94 204-270 (281)
31 2ysj_A Tripartite motif-contai 99.7 1.8E-16 6.2E-21 82.4 5.4 46 28-73 15-63 (63)
32 1iym_A EL5; ring-H2 finger, ub 99.7 8.8E-17 3E-21 81.4 4.1 48 31-78 3-54 (55)
33 2ep4_A Ring finger protein 24; 99.7 1.6E-16 5.6E-21 85.0 5.0 54 29-82 11-67 (74)
34 3l11_A E3 ubiquitin-protein li 99.6 8.9E-18 3E-22 96.9 -0.3 50 30-79 12-62 (115)
35 2ecj_A Tripartite motif-contai 99.6 2.6E-16 8.9E-21 80.4 5.0 47 27-73 9-58 (58)
36 1jm7_B BARD1, BRCA1-associated 99.6 2.3E-17 7.8E-22 95.5 0.9 61 31-93 20-81 (117)
37 2ecn_A Ring finger protein 141 99.6 7.5E-17 2.6E-21 85.4 2.5 52 29-81 11-62 (70)
38 2ecm_A Ring finger and CHY zin 99.6 1.7E-16 5.9E-21 80.3 3.5 47 32-78 4-54 (55)
39 1x4j_A Ring finger protein 38; 99.6 1.1E-16 3.9E-21 85.9 2.9 50 31-80 21-73 (75)
40 1chc_A Equine herpes virus-1 r 99.6 1.9E-16 6.6E-21 83.4 3.4 48 32-79 4-52 (68)
41 2yu4_A E3 SUMO-protein ligase 99.6 8.3E-17 2.8E-21 90.0 1.9 64 31-94 5-78 (94)
42 2f42_A STIP1 homology and U-bo 99.6 6.1E-16 2.1E-20 95.3 5.3 66 29-94 102-168 (179)
43 1g25_A CDK-activating kinase a 99.6 4.2E-16 1.4E-20 81.5 3.9 52 32-83 2-59 (65)
44 2ckl_B Ubiquitin ligase protei 99.6 9.4E-17 3.2E-21 97.8 1.3 62 31-92 52-116 (165)
45 1v87_A Deltex protein 2; ring- 99.6 9.3E-16 3.2E-20 88.2 5.0 57 33-89 25-105 (114)
46 2ecl_A Ring-box protein 2; RNF 99.6 9.7E-16 3.3E-20 83.5 4.2 49 32-80 14-77 (81)
47 4ap4_A E3 ubiquitin ligase RNF 99.6 4.1E-16 1.4E-20 91.3 2.9 52 31-82 5-63 (133)
48 1rmd_A RAG1; V(D)J recombinati 99.6 3.3E-16 1.1E-20 90.4 1.9 53 31-83 21-74 (116)
49 3hcs_A TNF receptor-associated 99.6 5.6E-16 1.9E-20 94.7 2.8 66 27-92 12-78 (170)
50 3knv_A TNF receptor-associated 99.6 4.1E-16 1.4E-20 93.0 1.0 51 28-78 26-77 (141)
51 1bor_A Transcription factor PM 99.6 1E-15 3.5E-20 78.0 2.2 48 31-81 4-51 (56)
52 1e4u_A Transcriptional repress 99.5 8.6E-15 3E-19 79.2 5.4 54 30-83 8-66 (78)
53 3dpl_R Ring-box protein 1; ubi 99.5 1.6E-14 5.3E-19 82.4 4.7 47 32-78 36-100 (106)
54 4ap4_A E3 ubiquitin ligase RNF 99.5 7.1E-15 2.4E-19 86.0 1.2 53 30-82 69-128 (133)
55 2vje_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 74.4 3.2 47 32-78 7-56 (64)
56 4ic3_A E3 ubiquitin-protein li 99.5 1.7E-14 5.7E-19 77.3 1.7 45 31-79 22-67 (74)
57 2vje_B MDM4 protein; proto-onc 99.4 3.7E-14 1.3E-18 73.8 2.9 46 33-78 7-55 (63)
58 2y1n_A E3 ubiquitin-protein li 99.4 5.6E-14 1.9E-18 95.2 4.2 50 32-81 331-381 (389)
59 3htk_C E3 SUMO-protein ligase 99.4 1.9E-14 6.6E-19 92.8 1.6 64 31-94 179-247 (267)
60 2ecg_A Baculoviral IAP repeat- 99.4 1.7E-13 5.7E-18 73.5 2.4 45 32-80 24-69 (75)
61 4a0k_B E3 ubiquitin-protein li 99.4 8.1E-14 2.8E-18 80.6 0.2 48 32-79 47-112 (117)
62 2ea5_A Cell growth regulator w 99.3 8.9E-13 3E-17 69.5 4.1 47 30-80 12-59 (68)
63 2d8s_A Cellular modulator of i 99.3 1.1E-12 3.7E-17 71.2 4.4 51 31-81 13-72 (80)
64 2bay_A PRE-mRNA splicing facto 99.3 6.4E-13 2.2E-17 68.7 2.1 55 33-87 3-58 (61)
65 2yho_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 72.7 0.7 45 32-80 17-62 (79)
66 2ct0_A Non-SMC element 1 homol 99.2 2.7E-11 9.2E-16 64.7 6.5 52 29-80 11-65 (74)
67 3t6p_A Baculoviral IAP repeat- 99.1 7.1E-12 2.4E-16 84.0 1.2 45 31-79 293-338 (345)
68 1wim_A KIAA0161 protein; ring 99.1 3.6E-11 1.2E-15 66.8 2.4 49 32-80 4-67 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.9 8.9E-10 3.1E-14 73.6 3.0 49 31-79 306-373 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.8 5.5E-09 1.9E-13 53.5 4.4 48 32-79 5-59 (60)
71 3vk6_A E3 ubiquitin-protein li 98.8 5.9E-09 2E-13 58.1 3.5 46 35-80 3-50 (101)
72 3nw0_A Non-structural maintena 98.1 4.8E-06 1.6E-10 53.3 4.6 48 33-80 180-230 (238)
73 3m62_A Ubiquitin conjugation f 98.1 1.7E-06 5.7E-11 64.3 2.6 67 28-94 886-953 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 97.5 5.7E-05 2E-09 41.9 2.4 30 33-62 3-35 (101)
75 2ko5_A Ring finger protein Z; 97.1 0.00038 1.3E-08 38.2 2.9 47 32-80 27-74 (99)
76 2cs3_A Protein C14ORF4, MY039 96.5 0.0062 2.1E-07 32.5 4.6 35 31-65 13-51 (93)
77 3i2d_A E3 SUMO-protein ligase 94.8 0.025 8.5E-07 38.3 3.3 62 31-92 247-313 (371)
78 4fo9_A E3 SUMO-protein ligase 94.6 0.031 1E-06 37.7 3.3 62 31-92 213-279 (360)
79 2lri_C Autoimmune regulator; Z 94.2 0.088 3E-06 26.9 3.9 44 32-77 11-60 (66)
80 1wil_A KIAA1045 protein; ring 93.4 0.24 8.3E-06 26.6 4.8 34 29-63 11-47 (89)
81 3t7l_A Zinc finger FYVE domain 89.6 0.2 7E-06 27.0 2.0 30 33-62 20-53 (90)
82 1z60_A TFIIH basal transcripti 89.5 0.4 1.4E-05 23.9 2.9 40 34-73 16-58 (59)
83 2yw8_A RUN and FYVE domain-con 89.2 0.18 6E-06 26.7 1.5 30 33-62 19-52 (82)
84 2k16_A Transcription initiatio 88.6 0.14 4.7E-06 26.6 0.9 47 32-78 17-70 (75)
85 3mjh_B Early endosome antigen 88.5 0.07 2.4E-06 23.8 -0.3 14 33-46 5-18 (34)
86 1f62_A Transcription factor WS 88.1 0.3 1E-05 23.2 1.9 41 35-75 2-49 (51)
87 1m3v_A FLIN4, fusion of the LI 87.9 0.47 1.6E-05 26.7 2.9 49 33-81 32-83 (122)
88 1zbd_B Rabphilin-3A; G protein 87.8 0.57 2E-05 27.2 3.2 30 32-61 54-88 (134)
89 2l5u_A Chromodomain-helicase-D 87.8 0.52 1.8E-05 23.4 2.7 42 32-75 10-57 (61)
90 1vfy_A Phosphatidylinositol-3- 87.1 0.34 1.2E-05 25.0 1.8 28 34-61 12-43 (73)
91 1z2q_A LM5-1; membrane protein 86.9 0.44 1.5E-05 25.3 2.2 31 32-62 20-54 (84)
92 2gmg_A Hypothetical protein PF 86.9 0.23 7.9E-06 27.7 1.1 33 46-83 68-100 (105)
93 3mpx_A FYVE, rhogef and PH dom 86.9 0.23 7.8E-06 33.7 1.3 45 33-77 375-430 (434)
94 1x64_A Alpha-actinin-2 associa 86.6 1.5 5.3E-05 23.0 4.4 43 31-81 23-65 (89)
95 1x62_A C-terminal LIM domain p 86.6 0.85 2.9E-05 23.5 3.2 40 32-79 14-53 (79)
96 2cor_A Pinch protein; LIM doma 86.1 0.95 3.2E-05 23.4 3.3 41 33-81 15-55 (79)
97 2fiy_A Protein FDHE homolog; F 85.7 0.16 5.3E-06 33.6 0.0 46 31-76 180-231 (309)
98 1joc_A EEA1, early endosomal a 85.0 0.32 1.1E-05 27.9 1.1 29 34-62 70-102 (125)
99 2lbm_A Transcriptional regulat 84.6 1.7 5.7E-05 25.5 4.1 44 32-75 62-116 (142)
100 2zet_C Melanophilin; complex, 84.5 1.7 5.7E-05 25.8 4.1 29 32-60 67-100 (153)
101 1weo_A Cellulose synthase, cat 84.5 3.4 0.00011 22.4 5.6 47 32-78 15-69 (93)
102 1wfk_A Zinc finger, FYVE domai 84.4 0.41 1.4E-05 25.7 1.4 30 33-62 9-42 (88)
103 2d8z_A Four and A half LIM dom 84.3 1.1 3.8E-05 22.3 2.9 39 34-80 6-44 (70)
104 1nyp_A Pinch protein; LIM doma 84.0 0.71 2.4E-05 22.8 2.1 39 34-80 6-44 (66)
105 1wig_A KIAA1808 protein; LIM d 83.8 1.2 4E-05 22.6 2.9 37 34-78 6-42 (73)
106 2dar_A PDZ and LIM domain prot 83.7 0.74 2.5E-05 24.3 2.2 42 32-81 24-65 (90)
107 1fp0_A KAP-1 corepressor; PHD 83.3 1.3 4.4E-05 23.9 3.0 46 29-76 21-72 (88)
108 1x4u_A Zinc finger, FYVE domai 82.8 0.49 1.7E-05 25.1 1.2 29 33-61 14-46 (84)
109 1mm2_A MI2-beta; PHD, zinc fin 82.8 0.51 1.7E-05 23.5 1.2 43 32-76 8-56 (61)
110 3ql9_A Transcriptional regulat 82.5 1.9 6.6E-05 24.8 3.7 44 32-75 56-110 (129)
111 2co8_A NEDD9 interacting prote 82.5 2 6.9E-05 22.2 3.6 44 30-81 12-56 (82)
112 1wyh_A SLIM 2, skeletal muscle 82.4 1.1 3.9E-05 22.3 2.5 40 34-81 6-47 (72)
113 2xjy_A Rhombotin-2; oncoprotei 81.5 1.2 4.2E-05 25.0 2.7 48 32-79 28-78 (131)
114 1wd2_A Ariadne-1 protein homol 81.2 0.2 7E-06 25.0 -0.7 33 34-66 7-47 (60)
115 1x4l_A Skeletal muscle LIM-pro 81.1 2.3 7.7E-05 21.2 3.4 39 34-80 6-48 (72)
116 2cu8_A Cysteine-rich protein 2 80.9 1.3 4.6E-05 22.4 2.5 40 33-80 9-49 (76)
117 2lv9_A Histone-lysine N-methyl 80.6 0.57 2E-05 25.6 1.0 43 32-75 27-75 (98)
118 3v43_A Histone acetyltransfera 80.4 4.1 0.00014 22.5 4.6 29 33-61 5-42 (112)
119 3o36_A Transcription intermedi 80.0 0.47 1.6E-05 28.7 0.5 44 32-77 3-52 (184)
120 2o35_A Hypothetical protein DU 79.4 0.77 2.6E-05 25.3 1.2 11 55-65 43-53 (105)
121 2d8x_A Protein pinch; LIM doma 79.4 1.3 4.5E-05 22.0 2.1 39 34-80 6-44 (70)
122 3fyb_A Protein of unknown func 79.3 0.78 2.7E-05 25.3 1.2 11 55-65 42-52 (104)
123 1v6g_A Actin binding LIM prote 79.2 1 3.5E-05 23.2 1.7 40 34-81 16-55 (81)
124 1x6a_A LIMK-2, LIM domain kina 79.0 1.5 5.2E-05 22.4 2.3 38 34-79 16-53 (81)
125 1wen_A Inhibitor of growth fam 78.8 4 0.00014 20.8 3.9 45 31-77 14-66 (71)
126 2cuq_A Four and A half LIM dom 78.4 1.8 6.2E-05 22.1 2.5 39 34-80 16-54 (80)
127 1x63_A Skeletal muscle LIM-pro 78.4 2 6.9E-05 22.0 2.7 40 34-81 16-57 (82)
128 1x68_A FHL5 protein; four-and- 78.0 1.3 4.3E-05 22.5 1.8 39 34-80 6-48 (76)
129 1dvp_A HRS, hepatocyte growth 77.9 0.65 2.2E-05 28.9 0.8 30 32-61 160-193 (220)
130 1y02_A CARP2, FYVE-ring finger 77.9 0.67 2.3E-05 26.4 0.7 43 33-75 19-65 (120)
131 3zyq_A Hepatocyte growth facto 77.7 1.2 3.9E-05 28.0 1.9 31 32-62 163-197 (226)
132 3u5n_A E3 ubiquitin-protein li 77.6 0.37 1.3E-05 29.8 -0.5 44 32-77 6-55 (207)
133 2cur_A Skeletal muscle LIM-pro 76.6 1.7 5.9E-05 21.5 2.1 37 35-79 7-43 (69)
134 2e6r_A Jumonji/ARID domain-con 76.6 0.2 6.7E-06 27.2 -1.7 46 31-76 14-66 (92)
135 2yql_A PHD finger protein 21A; 75.7 0.21 7.2E-06 24.4 -1.6 42 31-74 7-54 (56)
136 2xqn_T Testin, TESS; metal-bin 75.4 3.5 0.00012 22.9 3.3 47 32-80 29-76 (126)
137 2ysm_A Myeloid/lymphoid or mix 75.4 0.6 2.1E-05 25.9 0.1 34 32-65 6-42 (111)
138 1x3h_A Leupaxin; paxillin fami 74.6 1.8 6.1E-05 22.1 1.8 39 34-80 16-54 (80)
139 2pv0_B DNA (cytosine-5)-methyl 74.5 4.5 0.00015 27.6 4.1 45 32-76 92-148 (386)
140 2dlo_A Thyroid receptor-intera 74.3 1.6 5.4E-05 22.4 1.6 40 33-80 15-54 (81)
141 3asl_A E3 ubiquitin-protein li 74.0 0.66 2.2E-05 23.8 -0.0 41 35-75 20-68 (70)
142 4g9i_A Hydrogenase maturation 73.8 1.7 5.8E-05 32.2 2.1 50 29-78 102-189 (772)
143 1x4k_A Skeletal muscle LIM-pro 73.6 1.9 6.5E-05 21.4 1.8 39 34-80 6-46 (72)
144 3a1b_A DNA (cytosine-5)-methyl 73.6 3.6 0.00012 24.6 3.2 40 33-75 79-133 (159)
145 1rut_X Flinc4, fusion protein 73.4 1 3.4E-05 27.2 0.7 48 32-79 31-81 (188)
146 2rgt_A Fusion of LIM/homeobox 73.1 6.6 0.00022 23.1 4.3 46 32-79 32-77 (169)
147 2ehe_A Four and A half LIM dom 72.3 2.8 9.4E-05 21.5 2.2 40 34-81 16-57 (82)
148 2egq_A FHL1 protein; LIM domai 72.1 2.2 7.7E-05 21.5 1.8 40 34-81 16-60 (77)
149 1we9_A PHD finger family prote 71.7 0.43 1.5E-05 23.8 -1.0 45 32-76 5-58 (64)
150 2ro1_A Transcription intermedi 71.7 1.2 4E-05 27.2 0.7 44 34-77 3-50 (189)
151 2jrp_A Putative cytoplasmic pr 71.5 0.098 3.3E-06 27.9 -3.6 40 34-78 3-42 (81)
152 3shb_A E3 ubiquitin-protein li 71.0 0.56 1.9E-05 24.6 -0.7 41 35-75 28-76 (77)
153 2jmo_A Parkin; IBR, E3 ligase, 70.9 0.23 8E-06 26.1 -2.2 16 50-65 55-70 (80)
154 2d8v_A Zinc finger FYVE domain 70.8 1.4 4.7E-05 22.5 0.8 31 33-64 8-39 (67)
155 2e6s_A E3 ubiquitin-protein li 70.7 0.76 2.6E-05 24.1 -0.2 41 35-75 28-76 (77)
156 2l43_A N-teminal domain from h 70.6 5.9 0.0002 21.0 3.3 49 30-78 22-77 (88)
157 1iml_A CRIP, cysteine rich int 70.6 1.6 5.5E-05 22.1 1.0 42 32-75 26-69 (76)
158 2jtn_A LIM domain-binding prot 70.2 6 0.00021 23.6 3.7 44 34-79 88-131 (182)
159 3ttc_A HYPF, transcriptional r 69.8 2.6 8.8E-05 30.7 2.2 49 29-77 13-99 (657)
160 2dj7_A Actin-binding LIM prote 69.5 5 0.00017 20.6 2.9 40 32-79 14-54 (80)
161 2d8y_A Eplin protein; LIM doma 69.2 10 0.00035 19.7 4.8 40 33-80 15-55 (91)
162 3lqh_A Histone-lysine N-methyl 68.0 1.6 5.6E-05 26.6 0.8 45 34-78 3-65 (183)
163 2iyb_E Testin, TESS, TES; LIM 67.9 1.8 6.3E-05 21.2 0.9 39 35-81 4-46 (65)
164 3vth_A Hydrogenase maturation 67.4 4.1 0.00014 30.2 2.9 50 29-78 107-194 (761)
165 1wev_A Riken cDNA 1110020M19; 67.3 1.4 4.7E-05 23.6 0.3 47 32-78 15-74 (88)
166 1wem_A Death associated transc 66.1 10 0.00035 19.3 3.6 46 31-77 14-71 (76)
167 1g47_A Pinch protein; LIM doma 64.0 3.8 0.00013 20.6 1.7 41 33-81 11-53 (77)
168 2ku3_A Bromodomain-containing 63.0 9.9 0.00034 19.3 3.1 45 31-75 14-65 (71)
169 3ask_A E3 ubiquitin-protein li 62.9 1.2 4.2E-05 28.2 -0.5 41 35-75 176-224 (226)
170 1wep_A PHF8; structural genomi 62.2 11 0.00037 19.4 3.3 45 32-77 11-64 (79)
171 1weu_A Inhibitor of growth fam 61.2 9.8 0.00033 20.5 3.0 44 32-77 35-86 (91)
172 2l4z_A DNA endonuclease RBBP8, 60.9 5.8 0.0002 22.3 2.2 38 33-78 61-99 (123)
173 2yt5_A Metal-response element- 60.8 3.6 0.00012 20.4 1.2 45 32-76 5-61 (66)
174 3o70_A PHD finger protein 13; 60.6 1.1 3.9E-05 22.8 -0.8 45 30-75 16-66 (68)
175 1j2o_A FLIN2, fusion of rhombo 60.5 9.8 0.00033 20.8 3.1 36 32-67 29-67 (114)
176 1xwh_A Autoimmune regulator; P 59.1 1.2 4E-05 22.4 -0.9 43 32-76 7-55 (66)
177 2cup_A Skeletal muscle LIM-pro 58.9 8.1 0.00028 20.4 2.5 47 32-80 32-79 (101)
178 2jne_A Hypothetical protein YF 58.8 0.2 6.8E-06 27.6 -4.0 40 34-78 33-72 (101)
179 2l3k_A Rhombotin-2, linker, LI 58.8 6.6 0.00023 21.8 2.2 34 32-65 35-70 (123)
180 1x61_A Thyroid receptor intera 57.3 16 0.00054 17.9 3.9 36 35-78 7-44 (72)
181 2puy_A PHD finger protein 21A; 57.1 1.3 4.4E-05 21.8 -0.9 43 32-76 4-52 (60)
182 3c5k_A HD6, histone deacetylas 56.7 5.5 0.00019 22.2 1.6 25 33-57 24-48 (109)
183 2jvx_A NF-kappa-B essential mo 56.5 3.6 0.00012 17.2 0.6 13 68-80 4-16 (28)
184 2vrw_B P95VAV, VAV1, proto-onc 55.4 30 0.001 23.1 5.3 59 4-62 323-391 (406)
185 2lq6_A Bromodomain-containing 53.1 20 0.00068 18.9 3.4 32 31-63 15-51 (87)
186 1a7i_A QCRP2 (LIM1); LIM domai 52.8 2.9 9.8E-05 21.4 -0.0 39 34-80 8-47 (81)
187 1wg2_A Zinc finger (AN1-like) 51.4 22 0.00076 17.8 3.3 27 32-58 14-41 (64)
188 4gut_A Lysine-specific histone 51.3 9.3 0.00032 28.2 2.4 32 34-65 14-55 (776)
189 2ct7_A Ring finger protein 31; 49.6 0.67 2.3E-05 24.6 -2.9 31 35-65 27-63 (86)
190 3f6q_B LIM and senescent cell 47.5 11 0.00036 18.4 1.7 40 33-80 11-52 (72)
191 2vpb_A Hpygo1, pygopus homolog 47.2 12 0.0004 18.7 1.8 30 32-61 7-41 (65)
192 1zfo_A LAsp-1; LIM domain, zin 45.7 9.9 0.00034 15.9 1.2 25 35-59 5-30 (31)
193 1x4w_A Hypothetical protein FL 43.7 12 0.00041 19.0 1.5 27 32-58 14-44 (67)
194 1b8t_A Protein (CRP1); LIM dom 43.2 31 0.0011 20.5 3.6 35 31-65 32-67 (192)
195 1l8d_A DNA double-strand break 42.2 6.8 0.00023 21.4 0.5 11 68-78 48-58 (112)
196 1wff_A Riken cDNA 2810002D23 p 42.0 21 0.00072 19.0 2.3 27 32-58 24-52 (85)
197 2ctu_A Zinc finger protein 483 41.2 6.5 0.00022 18.8 0.2 36 32-80 17-52 (73)
198 2uzg_A Ubiquitin carboxyl-term 40.8 16 0.00056 19.7 1.9 26 33-58 25-53 (97)
199 1erd_A Pheromone ER-2; NMR {Eu 39.7 4.2 0.00014 17.8 -0.5 16 48-63 9-24 (40)
200 2a20_A Regulating synaptic mem 38.1 21 0.00071 17.7 1.8 13 30-42 6-18 (62)
201 1x4v_A Hypothetical protein LO 36.5 42 0.0014 16.7 3.2 38 32-72 11-51 (63)
202 2kgg_A Histone demethylase jar 35.7 26 0.00089 16.3 1.9 40 35-74 4-52 (52)
203 2m0e_A Zinc finger and BTB dom 35.5 21 0.00071 12.9 1.5 13 68-80 3-15 (29)
204 2g45_A Ubiquitin carboxyl-term 34.7 33 0.0011 19.6 2.6 26 32-57 33-58 (129)
205 2kkx_A Uncharacterized protein 34.4 60 0.002 17.8 4.3 71 12-82 6-82 (102)
206 3d00_A Tungsten formylmethanof 34.2 8 0.00027 23.6 -0.1 25 32-61 162-186 (191)
207 3vhs_A ATPase wrnip1; zinc fin 33.8 9.9 0.00034 15.5 0.2 10 69-78 8-17 (29)
208 1wfl_A Zinc finger protein 216 32.7 51 0.0017 17.0 2.8 27 32-58 24-51 (74)
209 1wfp_A Zinc finger (AN1-like) 32.4 56 0.0019 16.9 3.0 27 32-58 24-51 (74)
210 2gvi_A Conserved hypothetical 32.3 12 0.00041 23.0 0.5 36 26-61 165-201 (204)
211 1wfh_A Zinc finger (AN1-like) 32.2 52 0.0018 16.5 3.4 27 32-58 14-41 (64)
212 4gne_A Histone-lysine N-methyl 31.9 20 0.00067 19.8 1.2 41 31-76 13-62 (107)
213 2jmi_A Protein YNG1, ING1 homo 31.8 20 0.00069 19.1 1.3 43 31-75 24-75 (90)
214 2pk7_A Uncharacterized protein 31.3 14 0.00047 18.8 0.5 12 67-78 8-19 (69)
215 1yuz_A Nigerythrin; rubrythrin 30.9 38 0.0013 20.7 2.6 9 68-76 187-195 (202)
216 1r79_A Diacylglycerol kinase, 30.2 54 0.0019 17.2 2.8 32 32-63 37-74 (84)
217 2lvu_A Zinc finger and BTB dom 36.4 11 0.00037 13.7 0.0 11 69-79 4-14 (26)
218 1lv3_A Hypothetical protein YA 28.3 15 0.00052 18.7 0.4 11 68-78 10-20 (68)
219 2ffw_A Midline-1; B-BOX, ring 28.2 49 0.0017 16.8 2.4 31 32-62 29-62 (78)
220 2kpi_A Uncharacterized protein 26.8 22 0.00077 17.1 0.8 13 66-78 9-21 (56)
221 2lcq_A Putative toxin VAPC6; P 26.8 11 0.00037 22.1 -0.5 11 68-78 149-159 (165)
222 2jr6_A UPF0434 protein NMA0874 26.8 24 0.00081 17.8 0.9 13 66-78 7-19 (68)
223 1ard_A Yeast transcription fac 26.5 30 0.001 12.5 1.1 10 35-44 4-13 (29)
224 2hf1_A Tetraacyldisaccharide-1 26.2 23 0.0008 17.8 0.8 11 68-78 9-19 (68)
225 1loi_A Cyclic 3',5'-AMP specif 25.5 3.8 0.00013 16.3 -1.7 10 55-64 7-16 (26)
226 3pwf_A Rubrerythrin; non heme 25.3 26 0.00087 20.9 1.0 9 68-76 154-162 (170)
227 6rxn_A Rubredoxin; electron tr 24.7 32 0.0011 15.9 1.1 14 29-42 26-39 (46)
228 1znf_A 31ST zinc finger from X 23.9 35 0.0012 12.0 1.1 9 35-43 3-11 (27)
229 2jny_A Uncharacterized BCR; st 23.3 33 0.0011 17.2 1.1 13 66-78 9-21 (67)
230 2js4_A UPF0434 protein BB2007; 23.1 24 0.00084 17.9 0.6 13 66-78 7-19 (70)
231 2kwj_A Zinc finger protein DPF 22.0 20 0.00069 19.7 0.1 42 35-76 60-108 (114)
232 2elr_A Zinc finger protein 406 21.9 48 0.0016 12.8 1.4 13 33-45 9-21 (36)
233 2jyp_A Aragonite protein AP7; 21.4 30 0.001 14.7 0.6 24 33-56 9-32 (36)
234 1wfe_A Riken cDNA 2310008M20 p 21.1 72 0.0025 16.8 2.2 28 31-58 23-53 (86)
235 1paa_A Yeast transcription fac 20.6 47 0.0016 12.0 1.3 9 35-43 4-12 (30)
236 1p7a_A BF3, BKLF, kruppel-like 20.5 50 0.0017 12.9 1.3 13 33-45 11-23 (37)
237 1klr_A Zinc finger Y-chromosom 20.4 46 0.0016 11.9 1.9 13 68-80 3-15 (30)
238 1e8j_A Rubredoxin; iron-sulfur 20.0 41 0.0014 15.9 1.0 14 29-42 32-45 (52)
239 2lvr_A Zinc finger and BTB dom 24.7 23 0.00079 13.0 0.0 12 34-45 4-15 (30)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.80 E-value=4.1e-20 Score=100.09 Aligned_cols=66 Identities=23% Similarity=0.455 Sum_probs=59.0
Q ss_pred CCCcccccccccCCCCCeecCCCCcchHHhHHHHhhC-CCCCCCCCccCCCCccccCCcchhhhhcC
Q psy3884 30 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPAWRDGATSYFVQIF 95 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~q~~ 95 (95)
..+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||.||.++...+..++..+.++++.|
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 4567899999999999999999999999999999986 78999999999988888888888877643
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=100.81 Aligned_cols=70 Identities=21% Similarity=0.489 Sum_probs=56.1
Q ss_pred cccccCCCcccccccccCCCCCeecC-CCCcchHHhHHHHhhCC--CCCCCCCccCC-CCccccCCcchhhhhc
Q psy3884 25 TKETLLGVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDRE--QTCPLCRATLV-DDPAWRDGATSYFVQI 94 (95)
Q Consensus 25 ~~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~-~~~~~~~~~~~~~~q~ 94 (95)
+..+...+.+.|+||++.+.+|++++ |||+||..|+..|+... ..||.||.++. .....++..+.++++.
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 78 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNN 78 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHH
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHH
Confidence 34445567889999999999999999 99999999999998743 69999999974 4456666666666553
No 3
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=5e-19 Score=96.81 Aligned_cols=68 Identities=26% Similarity=0.615 Sum_probs=58.2
Q ss_pred ccccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhC------CCCCCCCCccCCCCccccCCcchhhhh
Q psy3884 26 KETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR------EQTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 26 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
..+...+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||.++...+...+..+.++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ve 85 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIVE 85 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSCC
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhhC
Confidence 33445678899999999999999999999999999999986 679999999999888777777776653
No 4
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=98.14 Aligned_cols=66 Identities=23% Similarity=0.565 Sum_probs=56.7
Q ss_pred ccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhC-------CCCCCCCCccCCCCccccCCcchhhhh
Q psy3884 28 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-------EQTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
+...+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||.++...++..+..+.++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lve 79 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIVE 79 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhhC
Confidence 334567899999999999999999999999999999986 568999999999888777777776653
No 5
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-19 Score=96.19 Aligned_cols=67 Identities=27% Similarity=0.674 Sum_probs=58.0
Q ss_pred cccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhC------CCCCCCCCccCCCCccccCCcchhhhh
Q psy3884 27 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR------EQTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
.+...+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+...++.++..+.++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ve 85 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIVE 85 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhhC
Confidence 3445677899999999999999999999999999999876 689999999999888888877776653
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=92.81 Aligned_cols=60 Identities=23% Similarity=0.604 Sum_probs=51.6
Q ss_pred ccccCCCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccC
Q psy3884 26 KETLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRD 85 (95)
Q Consensus 26 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 85 (95)
..+...+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||+||.++...+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 334456778999999999999987 999999999999999988999999999987765443
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.76 E-value=3.8e-19 Score=97.95 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=59.5
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
...+.+.||||++.+.+|++++|||+||..||..|+.....||.|+.++...+..++..+.+.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~ 75 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQA 75 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHH
Confidence 446788999999999999999999999999999999988999999999998888888888777764
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=89.93 Aligned_cols=54 Identities=30% Similarity=0.677 Sum_probs=47.7
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhh-CCCCCCCCCccCCCCcc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDDPA 82 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 82 (95)
...+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+||.++..+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3456789999999999999999999999999999995 56799999999987654
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.74 E-value=2.1e-18 Score=97.28 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=59.8
Q ss_pred cCCCcccccccccCCCCCeecCCC-CcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
...+++.||||++.+.+|++++|| |+||..||..|+.....||.|+.++...++.++..+.+.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR 84 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHH
Confidence 346789999999999999999999 999999999999988899999999998888888888777764
No 10
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.74 E-value=1.7e-18 Score=97.95 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=59.9
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
...+.+.||||++.+.+|++++|||+||..||..|+.....||.|+.++...+..++..+.+.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 90 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQA 90 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHH
Confidence 346788999999999999999999999999999999988999999999998888888888777764
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=91.60 Aligned_cols=57 Identities=25% Similarity=0.627 Sum_probs=48.2
Q ss_pred ccccCCCcccccccccCCCCCeecC-CCCcchHHhHHHHhhCC--CCCCCCCccCCCCcc
Q psy3884 26 KETLLGVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDRE--QTCPLCRATLVDDPA 82 (95)
Q Consensus 26 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 82 (95)
..+...+.+.|+||++.+.+|++++ |||+||..|+..|+... ..||+||+++...+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 3344567789999999999999999 99999999999999854 699999998665443
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=93.33 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=47.1
Q ss_pred cccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 27 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
.+.....+.|+||++.+.+|++++|||+||..|+..|+.....||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3444567899999999999999999999999999999998899999999986
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.1e-19 Score=100.09 Aligned_cols=64 Identities=22% Similarity=0.559 Sum_probs=55.7
Q ss_pred CCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 31 GVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+...+...+..+.++++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKS 84 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHH
Confidence 4567999999999999888 899999999999999988999999999987777777767666653
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.73 E-value=8.6e-19 Score=99.10 Aligned_cols=64 Identities=23% Similarity=0.531 Sum_probs=55.1
Q ss_pred CCCcccccccccCCCCCee-cCCCCcchHHhHHHHhhCC-CCCCCCCccCCCCccccCCcchhhhh
Q psy3884 30 LGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~-~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
..+.+.|+||++.+.+|+. ++|||+||..||..|+... ..||.||.++...++..+..+..+++
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 3456799999999999999 9999999999999999977 69999999998777777666665554
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-18 Score=91.44 Aligned_cols=52 Identities=33% Similarity=0.587 Sum_probs=47.0
Q ss_pred CCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 30 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..+...|+||++.+.+|+.++|||.||..|+..|+.....||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 3566799999999999999999999999999999998899999999987543
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=100.56 Aligned_cols=63 Identities=21% Similarity=0.479 Sum_probs=53.0
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhCC-CCCCCCCccCCC-CccccCCcchhhhh
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVD-DPAWRDGATSYFVQ 93 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~-~~~~~~~~~~~~~q 93 (95)
.+.+.|+||++.+.+|+.++|||+||..|+..|+... ..||.||.++.. .....+..+.++++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 4567999999999999999999999999999999854 499999999987 45556666666554
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=88.51 Aligned_cols=54 Identities=35% Similarity=0.817 Sum_probs=47.3
Q ss_pred ccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhh---CCCCCCCCCccCCCCc
Q psy3884 28 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLCRATLVDDP 81 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 81 (95)
+...+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+||.++..++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34456789999999999999999999999999999997 4568999999988654
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.70 E-value=5e-18 Score=90.13 Aligned_cols=53 Identities=30% Similarity=0.762 Sum_probs=47.1
Q ss_pred CCcccccccccCCCCC-------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccc
Q psy3884 31 GVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 83 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 83 (95)
.+...|+||++.+.+| +.++|||+||..|+..|+.....||+||.++...++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 4567999999999887 8889999999999999999999999999999876543
No 19
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=89.26 Aligned_cols=60 Identities=32% Similarity=0.918 Sum_probs=49.9
Q ss_pred ccccCCCcccccccccCCCCC---eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccC
Q psy3884 26 KETLLGVGCICPICHDEFKTP---VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRD 85 (95)
Q Consensus 26 ~~~~~~~~~~C~IC~~~~~~p---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 85 (95)
..+.......|+||++.+..+ +.++|||.||..|+..|+.....||+||..+...+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 344455678999999999865 456999999999999999988999999999987765543
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.70 E-value=2.4e-18 Score=102.22 Aligned_cols=50 Identities=34% Similarity=0.928 Sum_probs=45.9
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
.+++.|+||++.+.+|++++|||+||..|+..|+.....||+||.++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34568999999999999999999999999999999999999999998754
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-18 Score=88.74 Aligned_cols=52 Identities=31% Similarity=0.761 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCC-------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 28 TLLGVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
....+...|+||++.+.++ +.++|||.||..|+..|+.....||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3445678999999999876 788999999999999999998999999998864
No 22
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.69 E-value=6.8e-18 Score=96.45 Aligned_cols=63 Identities=22% Similarity=0.666 Sum_probs=52.0
Q ss_pred CCCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCC----ccccCCcchhhh
Q psy3884 30 LGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDD----PAWRDGATSYFV 92 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~----~~~~~~~~~~~~ 92 (95)
..+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+... ....+..+.+++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i 79 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIV 79 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHH
Confidence 35678999999999999987 9999999999999999989999999998865 333444444444
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=90.10 Aligned_cols=55 Identities=29% Similarity=0.662 Sum_probs=47.7
Q ss_pred cccCCCcccccccccCCCC----CeecCCCCcchHHhHHHHhhCC---CCCCCCCccCCCCc
Q psy3884 27 ETLLGVGCICPICHDEFKT----PVQLTCCHIFCESCVTKWFDRE---QTCPLCRATLVDDP 81 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 81 (95)
.+...+.+.|+||++.+.+ |+.++|||+||..|+..|+... ..||.||..+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3445667899999999998 8999999999999999999865 79999999987654
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.69 E-value=2e-17 Score=94.79 Aligned_cols=62 Identities=32% Similarity=0.720 Sum_probs=53.2
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhhCC---CCCCCCCccCCCCccccCCcchhhhh
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE---QTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
+.+.|+||++.+.+|+.++|||+||..|+..|+... ..||.||.++...+...+..+.++++
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~ 84 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVE 84 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHH
Confidence 356999999999999999999999999999999865 48999999999887777766666554
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.68 E-value=1.2e-17 Score=96.79 Aligned_cols=67 Identities=25% Similarity=0.567 Sum_probs=55.8
Q ss_pred cccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCC-CCCCCCccCCCCccccCCcchhhhh
Q psy3884 27 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
.+...+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||.++...+..++..+...++
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence 344566789999999999999999999999999999998664 9999999998877766665555443
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=100.40 Aligned_cols=64 Identities=22% Similarity=0.591 Sum_probs=53.8
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCC-CCCCCCccCCCC-ccccCCcchhhhhc
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLVDD-PAWRDGATSYFVQI 94 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~-~~~~~~~~~~~~q~ 94 (95)
.+.+.|+||++.+.+|++++|||+||..|+..|+.... .||+||.++... ....+..+.++++.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 45679999999999999999999999999999998654 899999999877 55566666666553
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=90.08 Aligned_cols=49 Identities=37% Similarity=0.981 Sum_probs=43.8
Q ss_pred CCcccccccccCCCC---CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 31 GVGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
.....|+||++.+.. ++.++|||.||..|+..|+..+..||+||.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456799999999887 6778999999999999999999999999998864
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=86.25 Aligned_cols=52 Identities=31% Similarity=0.781 Sum_probs=46.0
Q ss_pred CcccccccccCCCCC-------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccc
Q psy3884 32 VGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 83 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 83 (95)
+...|+||++.+.++ +.++|||.||..|+.+|+..+..||+||.++...+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 456999999999876 7889999999999999999999999999999876543
No 29
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=84.64 Aligned_cols=52 Identities=27% Similarity=0.725 Sum_probs=44.3
Q ss_pred cCCCcccccccccCCCC---CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 29 LLGVGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
.......|+||++.+.. ++.++|||.||..|+..|+..+..||+||..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34456799999998853 46789999999999999999889999999988754
No 30
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=4.2e-17 Score=105.65 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=57.6
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCC-CCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
.....+.||||++.+.+|++++|||+||..||..|+..+ ..||.|+.++...+..++..+...++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~ 270 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDA 270 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHH
Confidence 345678999999999999999999999999999999854 459999999988888888888777764
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=82.39 Aligned_cols=46 Identities=41% Similarity=0.904 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhh---CCCCCCCC
Q psy3884 28 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLC 73 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~C 73 (95)
+...+.+.|+||++.+.+|++++|||+||..|+..|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567789999999999999999999999999999998 45689988
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=8.8e-17 Score=81.42 Aligned_cols=48 Identities=40% Similarity=0.884 Sum_probs=42.5
Q ss_pred CCcccccccccCCCC---CeecC-CCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 31 GVGCICPICHDEFKT---PVQLT-CCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~---p~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
.+...|+||++.+.+ ++.++ |||.||..|+.+|+..+..||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356699999999987 67776 9999999999999999999999998874
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=84.96 Aligned_cols=54 Identities=28% Similarity=0.769 Sum_probs=45.4
Q ss_pred cCCCcccccccccCCCCCe---ecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCcc
Q psy3884 29 LLGVGCICPICHDEFKTPV---QLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 82 (95)
.......|+||++.+..+. .++|||.||..|+..|+.....||+||.++.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455679999999998763 44999999999999999988899999999876543
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.65 E-value=8.9e-18 Score=96.90 Aligned_cols=50 Identities=30% Similarity=0.803 Sum_probs=44.7
Q ss_pred CCCcccccccccCCCCCeecCCCCcchHHhHHHHhhC-CCCCCCCCccCCC
Q psy3884 30 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVD 79 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 79 (95)
..+++.|+||++.+.+|++++|||+||..|+..|+.. ...||.||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456799999999999999999999999999999976 5789999999864
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=80.38 Aligned_cols=47 Identities=38% Similarity=1.070 Sum_probs=40.6
Q ss_pred cccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhh---CCCCCCCC
Q psy3884 27 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLC 73 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~---~~~~CP~C 73 (95)
.+...+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344556789999999999999999999999999999954 55789987
No 36
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.64 E-value=2.3e-17 Score=95.52 Aligned_cols=61 Identities=26% Similarity=0.558 Sum_probs=53.0
Q ss_pred CCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhh
Q psy3884 31 GVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQ 93 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q 93 (95)
.+.+.|+||++.+.+|+++ +|||+||..|+..|+. ..||+||.++...+...+..+.++++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHH
Confidence 4567999999999999999 9999999999999987 78999999998777777766666655
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-17 Score=85.44 Aligned_cols=52 Identities=37% Similarity=0.864 Sum_probs=46.3
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
...+...|+||++.+.+ +.++|||.||..|+..|+.....||+||.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34567799999999999 89999999999999999999999999999987653
No 38
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.63 E-value=1.7e-16 Score=80.29 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=41.9
Q ss_pred CcccccccccCCCC----CeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
+...|+||++.+.+ ++.++|||.||..|+.+|+.....||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45699999999865 678899999999999999998899999999875
No 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=85.86 Aligned_cols=50 Identities=34% Similarity=0.830 Sum_probs=44.4
Q ss_pred CCcccccccccCCCCC---eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 31 GVGCICPICHDEFKTP---VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
.+...|+||++.+..+ +.++|||.||..|+..|+..+..||+||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567999999999877 6789999999999999999999999999988753
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.62 E-value=1.9e-16 Score=83.37 Aligned_cols=48 Identities=38% Similarity=0.993 Sum_probs=43.6
Q ss_pred CcccccccccCCCCC-eecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
....|+||++.+.++ +.++|||.||..|+..|+..+..||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456999999999987 788999999999999999988999999999864
No 41
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-17 Score=90.03 Aligned_cols=64 Identities=27% Similarity=0.571 Sum_probs=54.5
Q ss_pred CCcccccccccCCCCCeecC-CCCcchHHhHHHHhhCC------CCCCC--CCcc-CCCCccccCCcchhhhhc
Q psy3884 31 GVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDRE------QTCPL--CRAT-LVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~~~~~~~~~q~ 94 (95)
...+.||||++.|.+|++++ |||+||..||..|+... ..||+ |+.. +...++.++..+...++.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN 78 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence 45789999999999999996 99999999999999753 58999 8877 777788888777777653
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.61 E-value=6.1e-16 Score=95.31 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=57.9
Q ss_pred cCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCC-CCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 29 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
..++.+.||||++.+.+|++++|||+||..||..|+..+ ..||.|+.++...+..++..+.+.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDA 168 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHH
Confidence 446788999999999999999999999999999999864 469999999988888888888777764
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.61 E-value=4.2e-16 Score=81.49 Aligned_cols=52 Identities=33% Similarity=0.728 Sum_probs=43.5
Q ss_pred Cccccccccc-CCCCC----eecCCCCcchHHhHHHHhhC-CCCCCCCCccCCCCccc
Q psy3884 32 VGCICPICHD-EFKTP----VQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPAW 83 (95)
Q Consensus 32 ~~~~C~IC~~-~~~~p----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 83 (95)
++..|+||++ .+.+| +.++|||+||..|+.+|+.. ...||.||.++..+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3568999999 88887 46799999999999999764 46899999999876543
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.61 E-value=9.4e-17 Score=97.76 Aligned_cols=62 Identities=29% Similarity=0.693 Sum_probs=49.6
Q ss_pred CCcccccccccCCCCCeec-CCCCcchHHhHHHHhhC-CCCCCCCCccCCCC-ccccCCcchhhh
Q psy3884 31 GVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDR-EQTCPLCRATLVDD-PAWRDGATSYFV 92 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~-~~~~~~~~~~~~ 92 (95)
.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.. ...||+||.++... ...++..+..++
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i 116 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALI 116 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHH
Confidence 3456999999999999987 99999999999999997 67899999998644 333444444443
No 45
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.60 E-value=9.3e-16 Score=88.16 Aligned_cols=57 Identities=21% Similarity=0.470 Sum_probs=44.8
Q ss_pred cccccccccCCCCCe------------------ecCCCCcchHHhHHHHh-----hCCCCCCCCCccCCCC-ccccCCcc
Q psy3884 33 GCICPICHDEFKTPV------------------QLTCCHIFCESCVTKWF-----DREQTCPLCRATLVDD-PAWRDGAT 88 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~------------------~~~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~~~~~~-~~~~~~~~ 88 (95)
+..|+||++.+..+. .++|||.||..||..|+ .....||+||..+... ...+.+.+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~m 104 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKM 104 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCeE
Confidence 459999999987653 67999999999999999 4567999999998755 33445544
Q ss_pred h
Q psy3884 89 S 89 (95)
Q Consensus 89 ~ 89 (95)
+
T Consensus 105 ~ 105 (114)
T 1v87_A 105 E 105 (114)
T ss_dssp C
T ss_pred E
Confidence 3
No 46
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.7e-16 Score=83.49 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=41.5
Q ss_pred CcccccccccCCCC--------------Ceec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKT--------------PVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~--------------p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
++..|+||++.+.+ ++.+ +|||.||..||.+|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45689999998865 3455 5999999999999999999999999988644
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.59 E-value=4.1e-16 Score=91.28 Aligned_cols=52 Identities=31% Similarity=0.782 Sum_probs=47.1
Q ss_pred CCcccccccccCCCCC-------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCcc
Q psy3884 31 GVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 82 (95)
.+.+.|+||++.+.+| +.++|||+||..|+.+|+.....||+||+.+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4567999999999888 899999999999999999999999999999987654
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.58 E-value=3.3e-16 Score=90.39 Aligned_cols=53 Identities=26% Similarity=0.644 Sum_probs=47.2
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhC-CCCCCCCCccCCCCccc
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPAW 83 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 83 (95)
.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||.++...+..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 456799999999999999999999999999999986 67999999998876543
No 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.58 E-value=5.6e-16 Score=94.69 Aligned_cols=66 Identities=26% Similarity=0.595 Sum_probs=54.6
Q ss_pred cccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCC-CCCCCCCccCCCCccccCCcchhhh
Q psy3884 27 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFV 92 (95)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~~ 92 (95)
.+...+.+.|+||++.+.+|+.++|||+||..|+..|+... ..||.||.++...+.+++..+...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 34456778999999999999999999999999999999754 4999999999887766665554433
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.56 E-value=4.1e-16 Score=92.97 Aligned_cols=51 Identities=24% Similarity=0.661 Sum_probs=45.2
Q ss_pred ccCCCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCC-CCCCCCccCC
Q psy3884 28 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLV 78 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 78 (95)
+...+.+.|+||++.+.+|+.++|||+||..||..|+.... .||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567889999999999999999999999999999998654 8999999764
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=1e-15 Score=77.98 Aligned_cols=48 Identities=29% Similarity=0.625 Sum_probs=41.8
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||+.+...+
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 35679999999999999999999999999876 3568999999987654
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.55 E-value=8.6e-15 Score=79.23 Aligned_cols=54 Identities=24% Similarity=0.554 Sum_probs=43.1
Q ss_pred CCCcccccccccCCC--CCeecC--CCCcchHHhHHHHhh-CCCCCCCCCccCCCCccc
Q psy3884 30 LGVGCICPICHDEFK--TPVQLT--CCHIFCESCVTKWFD-REQTCPLCRATLVDDPAW 83 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~--~p~~~~--CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 83 (95)
..+++.|+||++.+. ++..++ |||.||..|+..++. ....||.||+++...+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 456789999999885 345555 999999999999875 457899999999876543
No 53
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.51 E-value=1.6e-14 Score=82.36 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=41.3
Q ss_pred CcccccccccCCCCC------------------eecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFKTP------------------VQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
....|+||++.+..+ +.++|||.||..||..|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999998865 34699999999999999999999999999865
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.47 E-value=7.1e-15 Score=85.97 Aligned_cols=53 Identities=30% Similarity=0.740 Sum_probs=46.9
Q ss_pred CCCcccccccccCCCCC-------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCcc
Q psy3884 30 LGVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 82 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 82 (95)
..+...|+||++.+.++ +.++|||.||..|+.+|+.....||+||.++..+++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 35677999999998876 788999999999999999999999999999987654
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.47 E-value=3e-14 Score=74.38 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=42.7
Q ss_pred CcccccccccCCCCCeec--CCCCc-chHHhHHHHhhCCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHI-FCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
++..|+||++...+++.+ ||||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 455899999999999877 99999 899999999998899999999885
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.45 E-value=1.7e-14 Score=77.32 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=40.6
Q ss_pred CCcccccccccCCCCCeecCCCCc-chHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
.+...|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456799999999999999999999 999999887 789999998864
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=3.7e-14 Score=73.81 Aligned_cols=46 Identities=17% Similarity=0.525 Sum_probs=42.0
Q ss_pred cccccccccCCCCCeec--CCCCc-chHHhHHHHhhCCCCCCCCCccCC
Q psy3884 33 GCICPICHDEFKTPVQL--TCCHI-FCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~--~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
...|+||++...+++.+ ||||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45899999999998877 99998 999999999988889999999885
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.44 E-value=5.6e-14 Score=95.15 Aligned_cols=50 Identities=32% Similarity=0.789 Sum_probs=45.3
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhh-CCCCCCCCCccCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDDP 81 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 81 (95)
....|+||++.+.+|+.++|||.||..|+..|+. ....||+||.++....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3469999999999999999999999999999998 7789999999987653
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.9e-14 Score=92.81 Aligned_cols=64 Identities=20% Similarity=0.482 Sum_probs=55.6
Q ss_pred CCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCC--CCCCC--CCccCCCCccccCCcchhhhhc
Q psy3884 31 GVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPL--CRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
...+.||||++.|.+|++. .|||+||..||..|+..+ ..||+ |++.+...+..++..+.+++++
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 4678999999999999985 999999999999999754 57999 9999988888888887777654
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=73.49 Aligned_cols=45 Identities=27% Similarity=0.690 Sum_probs=39.6
Q ss_pred CcccccccccCCCCCeecCCCCc-chHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
+...|+||++.+.+++.++|||. ||..|+.. ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 45689999999999999999999 99999964 37899999998754
No 61
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.35 E-value=8.1e-14 Score=80.58 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=0.9
Q ss_pred CcccccccccCCCCC------------------eecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKTP------------------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p------------------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
....|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 446999999998763 124899999999999999999999999998653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.9e-13 Score=69.51 Aligned_cols=47 Identities=30% Similarity=0.671 Sum_probs=40.9
Q ss_pred CCCcccccccccCCCCCeecCCCCc-chHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 30 LGVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..+...|+||++...+++.+||||. ||..|+.. ...||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3456799999999999999999999 99999974 47899999998754
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=71.23 Aligned_cols=51 Identities=27% Similarity=0.764 Sum_probs=42.2
Q ss_pred CCcccccccccCCC--CCeecCCC-----CcchHHhHHHHhhCC--CCCCCCCccCCCCc
Q psy3884 31 GVGCICPICHDEFK--TPVQLTCC-----HIFCESCVTKWFDRE--QTCPLCRATLVDDP 81 (95)
Q Consensus 31 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 81 (95)
.+...|+||++.+. ++.++||+ |.||..||.+|+..+ ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34569999998874 46788996 999999999999865 58999999987553
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.31 E-value=6.4e-13 Score=68.68 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=48.6
Q ss_pred cccccccccCCCCCeec-CCCCcchHHhHHHHhhCCCCCCCCCccCCCCccccCCc
Q psy3884 33 GCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGA 87 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 87 (95)
.+.|+|+++.+.+|+++ ++||+|++.||.+|+..+..||+.+.++...++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 46899999999999999 99999999999999998888999999998777665543
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.29 E-value=4.3e-13 Score=72.67 Aligned_cols=45 Identities=31% Similarity=0.771 Sum_probs=39.6
Q ss_pred CcccccccccCCCCCeecCCCCc-chHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
+...|+||++.+.+++.+||||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45589999999999999999999 999999765 4899999998754
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-11 Score=64.70 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=42.6
Q ss_pred cCCCcccccccccCCCCCeec-CCCCcchHHhHHHHhhCC--CCCCCCCccCCCC
Q psy3884 29 LLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPLCRATLVDD 80 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 80 (95)
.......|+||.+.+.....- .|+|.||..||.+|++.+ .+||+||.++...
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 344556999999999865433 899999999999999877 7999999987643
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.14 E-value=7.1e-12 Score=84.01 Aligned_cols=45 Identities=27% Similarity=0.778 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCCeecCCCCc-chHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
.+...|+||++.+.+|+.+||||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356799999999999999999999 999999877 789999998864
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=3.6e-11 Score=66.81 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=39.1
Q ss_pred CcccccccccCCCCCeec---CCCCcchHHhHHHHhhC--------CCCCCC--CCcc--CCCC
Q psy3884 32 VGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFDR--------EQTCPL--CRAT--LVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~--~~~~ 80 (95)
..+.|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 456999999999887543 79999999999998862 247999 9988 5543
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.87 E-value=8.9e-10 Score=73.63 Aligned_cols=49 Identities=27% Similarity=0.665 Sum_probs=38.8
Q ss_pred CCcccccccccCCCC----Ce----ecCCCCcchHHhHHHHhhCC-----------CCCCCCCccCCC
Q psy3884 31 GVGCICPICHDEFKT----PV----QLTCCHIFCESCVTKWFDRE-----------QTCPLCRATLVD 79 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~----p~----~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 79 (95)
.....|+||++.+.+ |. ...|||.||..|+.+|+... ..||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456699999998876 21 23799999999999999732 479999998763
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=5.5e-09 Score=53.55 Aligned_cols=48 Identities=21% Similarity=0.538 Sum_probs=39.2
Q ss_pred CcccccccccCCCCCeecCCC--C---cchHHhHHHHhhC--CCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCC--H---IFCESCVTKWFDR--EQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~Cg--H---~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 79 (95)
+...|.||++...++.++||. + .||..|+.+|+.. +..||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 455899999887777778865 4 7999999999973 5789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.77 E-value=5.9e-09 Score=58.07 Aligned_cols=46 Identities=24% Similarity=0.589 Sum_probs=38.1
Q ss_pred cccccccCCCC-CeecCCCCcchHHhHHHHhh-CCCCCCCCCccCCCC
Q psy3884 35 ICPICHDEFKT-PVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDD 80 (95)
Q Consensus 35 ~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 80 (95)
.|++|.-.+.. .+++||+|+||.+|+..|.+ ..+.||.|+.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58888877775 46779999999999999985 468999999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.07 E-value=4.8e-06 Score=53.27 Aligned_cols=48 Identities=29% Similarity=0.604 Sum_probs=39.5
Q ss_pred cccccccccCCCCCeec-CCCCcchHHhHHHHhhCC--CCCCCCCccCCCC
Q psy3884 33 GCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPLCRATLVDD 80 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 80 (95)
...|.||.+.......- .|+|.||..|+..|++.. ..||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 55899999998876544 499999999999999754 4999999986644
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.06 E-value=1.7e-06 Score=64.33 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=59.3
Q ss_pred ccCCCcccccccccCCCCCeecCCC-CcchHHhHHHHhhCCCCCCCCCccCCCCccccCCcchhhhhc
Q psy3884 28 TLLGVGCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 94 (95)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~q~ 94 (95)
...++++.|||-.+.+.+|++++-| ++|=+..|.+|+..+.+||.-|.++...+..++..+...|+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILC 953 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 3456788999999999999999998 599999999999988999999999998888888887777663
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.49 E-value=5.7e-05 Score=41.86 Aligned_cols=30 Identities=23% Similarity=0.837 Sum_probs=25.7
Q ss_pred cccccccccC-CCCCee--cCCCCcchHHhHHH
Q psy3884 33 GCICPICHDE-FKTPVQ--LTCCHIFCESCVTK 62 (95)
Q Consensus 33 ~~~C~IC~~~-~~~p~~--~~CgH~fc~~Ci~~ 62 (95)
+..|+||.+. +.+++. +.|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 5689999976 566766 89999999999997
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.13 E-value=0.00038 Score=38.24 Aligned_cols=47 Identities=28% Similarity=0.628 Sum_probs=38.4
Q ss_pred CcccccccccCCCCCeecCCC-CcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..+.|-.|+-..+ -.+.|. |..|..|+...+..+..||+|..+++.+
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3468888887655 355565 8999999999999999999999998755
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.52 E-value=0.0062 Score=32.51 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=28.8
Q ss_pred CCcccccccccCCCCCeecCC----CCcchHHhHHHHhh
Q psy3884 31 GVGCICPICHDEFKTPVQLTC----CHIFCESCVTKWFD 65 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~C----gH~fc~~Ci~~~~~ 65 (95)
...+.|.+|.+.+++...+.| +|.||..|-+..++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 457799999999998755544 59999999998886
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.025 Score=38.32 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=43.5
Q ss_pred CCcccccccccCCCCCeec-CCCCcchHHh--HHHHhh--CCCCCCCCCccCCCCccccCCcchhhh
Q psy3884 31 GVGCICPICHDEFKTPVQL-TCCHIFCESC--VTKWFD--REQTCPLCRATLVDDPAWRDGATSYFV 92 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-~CgH~fc~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 92 (95)
.-.+.||+-...+..|+.- .|.|.-|.+- +..... ....||+|.+.+...++..|..+..++
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 3467999999999999754 8999855433 222222 446899999998877776665554443
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.55 E-value=0.031 Score=37.75 Aligned_cols=62 Identities=21% Similarity=0.475 Sum_probs=43.1
Q ss_pred CCcccccccccCCCCCee-cCCCCcchHHh--HHHHhh--CCCCCCCCCccCCCCccccCCcchhhh
Q psy3884 31 GVGCICPICHDEFKTPVQ-LTCCHIFCESC--VTKWFD--REQTCPLCRATLVDDPAWRDGATSYFV 92 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~-~~CgH~fc~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 92 (95)
.-.+.||+-...+..|+. ..|.|.-|.+- +..... ....||+|.+.+...++..|..+..++
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 346799999999999975 48999955432 222222 346899999998877776665554443
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.18 E-value=0.088 Score=26.90 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=30.8
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhhC----CCCCCCCCccC
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFDR----EQTCPLCRATL 77 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 77 (95)
....|.||.+. ...++ .|...||..|+...+.. ...||.|....
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999864 22233 68899999999766542 35899997654
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.39 E-value=0.24 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.470 Sum_probs=24.2
Q ss_pred cCCCcccccccccCCCCCeec---CCCCcchHHhHHHH
Q psy3884 29 LLGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKW 63 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~ 63 (95)
....+..|.||-..- ....+ -|+.+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 344667999998543 23344 47899999999986
No 81
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=89.57 E-value=0.2 Score=27.01 Aligned_cols=30 Identities=23% Similarity=0.617 Sum_probs=22.3
Q ss_pred cccccccccCCCCC----eecCCCCcchHHhHHH
Q psy3884 33 GCICPICHDEFKTP----VQLTCCHIFCESCVTK 62 (95)
Q Consensus 33 ~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 62 (95)
...|.+|...|.-- .--.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45899999887632 1237999999999754
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=89.49 E-value=0.4 Score=23.93 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=28.2
Q ss_pred ccccccccCCCCCee---cCCCCcchHHhHHHHhhCCCCCCCC
Q psy3884 34 CICPICHDEFKTPVQ---LTCCHIFCESCVTKWFDREQTCPLC 73 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~---~~CgH~fc~~Ci~~~~~~~~~CP~C 73 (95)
..|-.|+..+.+..+ ..|++.||.+|=.-.-+.-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 369999998865542 3689999999953222344689987
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.18 E-value=0.18 Score=26.74 Aligned_cols=30 Identities=33% Similarity=0.850 Sum_probs=22.2
Q ss_pred cccccccccCCCCCe----ecCCCCcchHHhHHH
Q psy3884 33 GCICPICHDEFKTPV----QLTCCHIFCESCVTK 62 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~----~~~CgH~fc~~Ci~~ 62 (95)
...|.+|...|.--. --.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 348999999887321 227999999999753
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.65 E-value=0.14 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=32.0
Q ss_pred CcccccccccCCCCCeec---CCCCcchHHhHHHHhh----CCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 78 (95)
+...|+||.........+ .|..-||..|+..-.. ....||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445799998876543333 6778899999864332 2357999976654
No 85
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=88.48 E-value=0.07 Score=23.76 Aligned_cols=14 Identities=36% Similarity=0.966 Sum_probs=10.4
Q ss_pred cccccccccCCCCC
Q psy3884 33 GCICPICHDEFKTP 46 (95)
Q Consensus 33 ~~~C~IC~~~~~~p 46 (95)
.+.||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46888888877665
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.11 E-value=0.3 Score=23.24 Aligned_cols=41 Identities=22% Similarity=0.561 Sum_probs=26.5
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhh----CCCCCCCCCc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRA 75 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 75 (95)
.|.||...-....++ .|...||..|+..-+. ....||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887654333233 6888899999965333 2346888854
No 87
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=87.91 E-value=0.47 Score=26.69 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=36.7
Q ss_pred cccccccccCCCC---CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 33 GCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 33 ~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
-+.|..|...+.+ .....=|..||..|..+.+.....|..|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 3688899888852 334456778999999887765558999999887643
No 88
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=87.80 E-value=0.57 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=21.6
Q ss_pred CcccccccccCCC---CC--eecCCCCcchHHhHH
Q psy3884 32 VGCICPICHDEFK---TP--VQLTCCHIFCESCVT 61 (95)
Q Consensus 32 ~~~~C~IC~~~~~---~p--~~~~CgH~fc~~Ci~ 61 (95)
....|.+|...+. +. .-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4569999999883 22 233788999988864
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.78 E-value=0.52 Score=23.43 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=29.0
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRA 75 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 75 (95)
....|.+|... ...+. .|...||..|+..-+. ....||.|..
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999874 23333 6888999999976433 2357999954
No 90
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=87.13 E-value=0.34 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=21.1
Q ss_pred ccccccccCCCCCe----ecCCCCcchHHhHH
Q psy3884 34 CICPICHDEFKTPV----QLTCCHIFCESCVT 61 (95)
Q Consensus 34 ~~C~IC~~~~~~p~----~~~CgH~fc~~Ci~ 61 (95)
..|.+|...|.--. --.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999999876421 22699999999964
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=86.93 E-value=0.44 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=23.0
Q ss_pred CcccccccccCCCCCe----ecCCCCcchHHhHHH
Q psy3884 32 VGCICPICHDEFKTPV----QLTCCHIFCESCVTK 62 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~----~~~CgH~fc~~Ci~~ 62 (95)
+...|.+|...|.--. --.||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4458999999886421 227999999999754
No 92
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.89 E-value=0.23 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.578 Sum_probs=21.6
Q ss_pred CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCccc
Q psy3884 46 PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 83 (95)
Q Consensus 46 p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 83 (95)
+.-..||+.|. .-+.....||.|+..-...+.|
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBCCCCE
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccCCcce
Confidence 34457999981 2223557899999876665544
No 93
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=86.87 E-value=0.23 Score=33.69 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=0.0
Q ss_pred cccccccccCCCCC----eecCCCCcchHHhHHHHhh-------CCCCCCCCCccC
Q psy3884 33 GCICPICHDEFKTP----VQLTCCHIFCESCVTKWFD-------REQTCPLCRATL 77 (95)
Q Consensus 33 ~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~ 77 (95)
...|.+|...|.-- .--.||++||..|...... ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45899999987632 1227999999999865432 124566665443
No 94
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=86.63 E-value=1.5 Score=22.98 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 31 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
.....|..|.+.+...++..-+..||..| +.|-.|...+....
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCCC
Confidence 34568999999888766667778888877 46899988887643
No 95
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.60 E-value=0.85 Score=23.45 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.6
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
....|+-|.+.+...++..-+..||..|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 45699999998887666677888888774 58888887753
No 96
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.10 E-value=0.95 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=30.3
Q ss_pred cccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 33 GCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
...|+-|.+.+....+..-|..||..| +.|..|+.++....
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 55 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTADA 55 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCTTC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCCCC
Confidence 458999998888665666677777766 46888988887553
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=85.71 E-value=0.16 Score=33.64 Aligned_cols=46 Identities=17% Similarity=0.491 Sum_probs=34.9
Q ss_pred CCcccccccccCCCCCeec----CCC--CcchHHhHHHHhhCCCCCCCCCcc
Q psy3884 31 GVGCICPICHDEFKTPVQL----TCC--HIFCESCVTKWFDREQTCPLCRAT 76 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fc~~Ci~~~~~~~~~CP~Cr~~ 76 (95)
.....||+|.....-.++. .=| +.+|..|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999999976655433 234 457899999998888999999775
No 98
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=85.03 E-value=0.32 Score=27.89 Aligned_cols=29 Identities=31% Similarity=0.703 Sum_probs=21.7
Q ss_pred ccccccccCCCCC----eecCCCCcchHHhHHH
Q psy3884 34 CICPICHDEFKTP----VQLTCCHIFCESCVTK 62 (95)
Q Consensus 34 ~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 62 (95)
..|.+|...|.-- .--.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4899999988632 1227999999999643
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.61 E-value=1.7 Score=25.54 Aligned_cols=44 Identities=18% Similarity=0.510 Sum_probs=29.8
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhh-----------CCCCCCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-----------REQTCPLCRA 75 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~ 75 (95)
.+..|.+|.+--.--.--.|-..||..|+.+-+. ....||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4568999987432111116888999999986542 3358999964
No 100
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=84.49 E-value=1.7 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.674 Sum_probs=21.4
Q ss_pred CcccccccccCCC---CC--eecCCCCcchHHhH
Q psy3884 32 VGCICPICHDEFK---TP--VQLTCCHIFCESCV 60 (95)
Q Consensus 32 ~~~~C~IC~~~~~---~p--~~~~CgH~fc~~Ci 60 (95)
....|.+|...|. +. .-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3559999999764 22 23379999999997
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.48 E-value=3.4 Score=22.37 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=33.7
Q ss_pred CcccccccccCCCC----Ceec---CCCCcchHHhHHHHh-hCCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFKT----PVQL---TCCHIFCESCVTKWF-DREQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~~----p~~~---~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~ 78 (95)
..-.|.||-+.+-. .+.+ .|+-..|+.|..--. ..+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34599999998542 1333 577778999996433 35679999999886
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=84.44 E-value=0.41 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=21.9
Q ss_pred cccccccccCCCCCe----ecCCCCcchHHhHHH
Q psy3884 33 GCICPICHDEFKTPV----QLTCCHIFCESCVTK 62 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~----~~~CgH~fc~~Ci~~ 62 (95)
...|.+|...|.--. --.||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 348999999876421 227999999999753
No 103
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.26 E-value=1.1 Score=22.28 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=24.9
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+....+..-+..||..| +.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCTTS
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCCcC
Confidence 36777777776555555666666665 3477777776543
No 104
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=83.99 E-value=0.71 Score=22.77 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=28.2
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+....+..-|..||..| +.|..|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCCC
Confidence 47888888877666666677777766 4588888877654
No 105
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.82 E-value=1.2 Score=22.62 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=24.9
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
..|+-|...+...++..-+..||..| +.|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 36777877776655556666677666 45777777766
No 106
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.68 E-value=0.74 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=31.9
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
....|+.|.+.+....+..-+..||..| +.|..|+.++....
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYIG 65 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSSC
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCCE
Confidence 3458999999887766667777788777 45889988887543
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.25 E-value=1.3 Score=23.88 Aligned_cols=46 Identities=24% Similarity=0.531 Sum_probs=31.3
Q ss_pred cCCCcccccccccCCCCCeec--CCCCcchHHhHHHHhhC----CCCCCCCCcc
Q psy3884 29 LLGVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFDR----EQTCPLCRAT 76 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 76 (95)
.......|.+|...- .... .|...||..|+.+-+.. ...||.|...
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344566999999752 2222 68888999999765442 3579999754
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.80 E-value=0.49 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=21.4
Q ss_pred cccccccccCCCCCe----ecCCCCcchHHhHH
Q psy3884 33 GCICPICHDEFKTPV----QLTCCHIFCESCVT 61 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~----~~~CgH~fc~~Ci~ 61 (95)
...|.+|...|.--. --.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 348999999886321 22699999999964
No 109
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.78 E-value=0.51 Score=23.47 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=28.5
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 76 (95)
....|.+|.+. ...+. .|...||..|+..-+. ....||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45689999863 22222 5788899999875333 23479999654
No 110
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.51 E-value=1.9 Score=24.85 Aligned_cols=44 Identities=18% Similarity=0.526 Sum_probs=28.5
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHh-----------hCCCCCCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWF-----------DREQTCPLCRA 75 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~ 75 (95)
.+..|.+|.+--.-..--.|-..||..|+.+.+ .....|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345799998642211111678899999998652 13368999954
No 111
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.49 E-value=2 Score=22.21 Aligned_cols=44 Identities=30% Similarity=0.600 Sum_probs=30.2
Q ss_pred CCCcccccccccCCCC-CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 30 LGVGCICPICHDEFKT-PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
......|+.|.+.+.. ..+..-+..||..| +.|-.|+..+....
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 3445689999998753 34445566777777 45888888776554
No 112
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.39 E-value=1.1 Score=22.32 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=26.8
Q ss_pred ccccccccCCC--CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 34 CICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 34 ~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..|+.|.+.+. +.++..-+..||..| +.|-.|..++....
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTTSC
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCCCc
Confidence 47888888777 345556677777766 45777877776543
No 113
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=81.47 E-value=1.2 Score=25.02 Aligned_cols=48 Identities=13% Similarity=0.333 Sum_probs=34.1
Q ss_pred CcccccccccCCCC---CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
+-+.|..|...+.. +....=|..||..|..+.+.....|..|..++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45788888888752 3445567788999987765544478888887764
No 114
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.18 E-value=0.2 Score=25.02 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=22.4
Q ss_pred ccccccccCCCCC-----eecC---CCCcchHHhHHHHhhC
Q psy3884 34 CICPICHDEFKTP-----VQLT---CCHIFCESCVTKWFDR 66 (95)
Q Consensus 34 ~~C~IC~~~~~~p-----~~~~---CgH~fc~~Ci~~~~~~ 66 (95)
-.||-|...++.. ++-. |++.||..|..+|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4788888877643 2223 7888888888777543
No 115
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.11 E-value=2.3 Score=21.22 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=26.5
Q ss_pred ccccccccCCCC----CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+-|.+.+.. .++..-+..||..| +.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCCCC
Confidence 478888887774 44445667777766 4577887777644
No 116
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.92 E-value=1.3 Score=22.40 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=28.9
Q ss_pred cccccccccCCC-CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 33 GCICPICHDEFK-TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 33 ~~~C~IC~~~~~-~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
...|+.|.+.+. ...+..-+..||..| +.|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 348999999887 445555667777766 4588888888754
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.55 E-value=0.57 Score=25.60 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=28.7
Q ss_pred CcccccccccCCCCCeec---CCCCcchHHhHHHHhh---CCCCCCCCCc
Q psy3884 32 VGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD---REQTCPLCRA 75 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 75 (95)
+...| ||........++ .|..-||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34577 898776555455 5777899999854222 2358999964
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.35 E-value=4.1 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.5
Q ss_pred cccccccccCCC-------CCeec--CCCCcchHHhHH
Q psy3884 33 GCICPICHDEFK-------TPVQL--TCCHIFCESCVT 61 (95)
Q Consensus 33 ~~~C~IC~~~~~-------~p~~~--~CgH~fc~~Ci~ 61 (95)
...|.+|+..-. +..+. .|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 447889986521 12222 699999999994
No 119
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.96 E-value=0.47 Score=28.71 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=29.7
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCccC
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRATL 77 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 77 (95)
.+..|.+|...-. ... .|...||..|+.+-+. ....||.|+..-
T Consensus 3 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3457999986422 222 6888899999865444 235799997654
No 120
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=79.41 E-value=0.77 Score=25.35 Aligned_cols=11 Identities=36% Similarity=1.645 Sum_probs=10.3
Q ss_pred chHHhHHHHhh
Q psy3884 55 FCESCVTKWFD 65 (95)
Q Consensus 55 fc~~Ci~~~~~ 65 (95)
||..|+.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.37 E-value=1.3 Score=22.03 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=24.7
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+...++..-+..||..| +.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 36777777766554445555666665 3477777776654
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=79.35 E-value=0.78 Score=25.29 Aligned_cols=11 Identities=45% Similarity=1.515 Sum_probs=10.3
Q ss_pred chHHhHHHHhh
Q psy3884 55 FCESCVTKWFD 65 (95)
Q Consensus 55 fc~~Ci~~~~~ 65 (95)
||..|+.+|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 123
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.24 E-value=1 Score=23.18 Aligned_cols=40 Identities=18% Similarity=0.415 Sum_probs=28.3
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..|+.|.+.+...++..-+..||..| +.|-.|+.++...+
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 38888988877555556667777766 45888888876443
No 124
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.00 E-value=1.5 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=26.5
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
..|+.|.+.+....+..-+..||..| +.|..|..++..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccCC
Confidence 37888888777555555666777666 458888887754
No 125
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.81 E-value=4 Score=20.83 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=27.9
Q ss_pred CCcccccccccCCCCCeec---C--CC-CcchHHhHHHHhh--CCCCCCCCCccC
Q psy3884 31 GVGCICPICHDEFKTPVQL---T--CC-HIFCESCVTKWFD--REQTCPLCRATL 77 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fc~~Ci~~~~~--~~~~CP~Cr~~~ 77 (95)
.+...| ||....... ++ . |. .-||..|+.--.. ....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 345577 898865443 44 3 55 5799999862111 235799997643
No 126
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.44 E-value=1.8 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=26.6
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+....+..-+..||..| +.|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCTTC
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCCCC
Confidence 47888888776655556666777666 4578888877543
No 127
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.42 E-value=2 Score=21.98 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=28.6
Q ss_pred ccccccccCCC--CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 34 CICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 34 ~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..|+.|.+.+. +.++..-+..||..| +.|-.|+.++....
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTGS 57 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTSC
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCCc
Confidence 48888988887 445556677777776 45888888876553
No 128
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.99 E-value=1.3 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=27.1
Q ss_pred ccccccccCCCC----CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+.. .++..-+..||..| +.|..|+.++...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCCC
Confidence 478888888775 45556666777777 3577887777643
No 129
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.94 E-value=0.65 Score=28.91 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=22.0
Q ss_pred CcccccccccCCCCC----eecCCCCcchHHhHH
Q psy3884 32 VGCICPICHDEFKTP----VQLTCCHIFCESCVT 61 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~ 61 (95)
+...|.+|...|.-- .--.||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 346999999887632 122699999999864
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=77.87 E-value=0.67 Score=26.44 Aligned_cols=43 Identities=26% Similarity=0.614 Sum_probs=27.1
Q ss_pred cccccccccCCCCC----eecCCCCcchHHhHHHHhhCCCCCCCCCc
Q psy3884 33 GCICPICHDEFKTP----VQLTCCHIFCESCVTKWFDREQTCPLCRA 75 (95)
Q Consensus 33 ~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 75 (95)
...|..|...|..- .--.||.+||..|..........|-.|..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 34899999988642 12379999999997544434455666633
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.74 E-value=1.2 Score=28.00 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=22.7
Q ss_pred CcccccccccCCCCC----eecCCCCcchHHhHHH
Q psy3884 32 VGCICPICHDEFKTP----VQLTCCHIFCESCVTK 62 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~Ci~~ 62 (95)
+...|.+|...|.-- .--.||.+||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 345999999887632 1237999999999653
No 132
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.61 E-value=0.37 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=29.8
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCccC
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRATL 77 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 77 (95)
....|.+|...- .... .|...||..|+.+-+. ....||.|+..-
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445799998542 1222 6888999999865443 235899997654
No 133
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.61 E-value=1.7 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=20.6
Q ss_pred cccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
.|+-|.+.+....+..-+..||..| +.|..|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 7 GCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCTT
T ss_pred CCcccCCEeCcceEEECccccccCc--------CEECCCCCCCCC
Confidence 5666666665444444455555555 346666666653
No 134
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.59 E-value=0.2 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCcccccccccCCCCCeec---CCCCcchHHhHHHHhh----CCCCCCCCCcc
Q psy3884 31 GVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRAT 76 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 76 (95)
.+...|.||...-....++ .|...||..|+.+-+. ....||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456899999764322233 6888899999864332 23469998653
No 135
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.73 E-value=0.21 Score=24.42 Aligned_cols=42 Identities=21% Similarity=0.668 Sum_probs=26.3
Q ss_pred CCcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCC
Q psy3884 31 GVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCR 74 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr 74 (95)
..+..|.+|... ...+. .|...||..|+.+-+. ....||.|.
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345689999875 22222 6788899999864332 223577664
No 136
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=75.40 E-value=3.5 Score=22.94 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=34.2
Q ss_pred CcccccccccCCCCC-eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
+-+.|..|...+... ....=|..||..|..+. ....|..|..++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 447888998887753 34456778999998664 346799998888753
No 137
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.36 E-value=0.6 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=23.3
Q ss_pred CcccccccccCCCC-Cee--cCCCCcchHHhHHHHhh
Q psy3884 32 VGCICPICHDEFKT-PVQ--LTCCHIFCESCVTKWFD 65 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~--~~CgH~fc~~Ci~~~~~ 65 (95)
.+..|.||.+.-.. ..+ ..|+..||..|+.....
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45589999876432 212 27889999999976543
No 138
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.58 E-value=1.8 Score=22.08 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=25.5
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+....+..-+..||..| +.|..|+.++...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCCC
Confidence 36777877776554445555666655 4578888777654
No 139
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=74.45 E-value=4.5 Score=27.59 Aligned_cols=45 Identities=22% Similarity=0.545 Sum_probs=29.6
Q ss_pred CcccccccccCCCCCee--cCCCCcchHHhHHHHhh----------CCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFKTPVQ--LTCCHIFCESCVTKWFD----------REQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~--~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~ 76 (95)
.+..|.+|-+--.--.- -.|...||..||...+. ....|-+|...
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34588888864321111 16889999999998874 23589888543
No 140
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.28 E-value=1.6 Score=22.44 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=26.4
Q ss_pred cccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 33 GCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
...|+.|.+.+...++..-+..||..| +.|..|..++...
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccCCC
Confidence 347888887776555545566666665 4578887777644
No 141
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.97 E-value=0.66 Score=23.78 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=26.2
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhh----C-CCCCCCCCc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 75 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 75 (95)
.|.||...-....++ .|...||..|+.+-+. . .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777643333333 6888999999975433 2 447888864
No 142
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=73.78 E-value=1.7 Score=32.21 Aligned_cols=50 Identities=28% Similarity=0.638 Sum_probs=36.4
Q ss_pred cCCCcccccccccCCCCC----------eecCCCCcc--------------------hHHhHHHHhh--------CCCCC
Q psy3884 29 LLGVGCICPICHDEFKTP----------VQLTCCHIF--------------------CESCVTKWFD--------REQTC 70 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~C 70 (95)
...+.-.|+-|+.++.+| --+.||..| |..|..++-. +...|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 346677999999887765 123577766 9999999875 22489
Q ss_pred CCCCccCC
Q psy3884 71 PLCRATLV 78 (95)
Q Consensus 71 P~Cr~~~~ 78 (95)
|.|.-.+.
T Consensus 182 ~~CGP~l~ 189 (772)
T 4g9i_A 182 PVCGPSYR 189 (772)
T ss_dssp TTTSCCEE
T ss_pred ccCCceEE
Confidence 99977653
No 143
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.61 E-value=1.9 Score=21.45 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=24.7
Q ss_pred ccccccccCCCC--CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFKT--PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~~--p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+.. .++..-+..||..| +.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCCC
Confidence 377778877763 34445566666665 3477777776654
No 144
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.61 E-value=3.6 Score=24.58 Aligned_cols=40 Identities=30% Similarity=0.772 Sum_probs=27.3
Q ss_pred cccccccccCCCCCeec-----CCCCcchHHhHHHHhhC----------CCCCCCCCc
Q psy3884 33 GCICPICHDEFKTPVQL-----TCCHIFCESCVTKWFDR----------EQTCPLCRA 75 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~-----~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 75 (95)
...|.||-+- ..++ .|...||..||..++.. ...|-+|..
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4477777753 2233 47788999999987753 247888854
No 145
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=73.43 E-value=1 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.398 Sum_probs=31.4
Q ss_pred CcccccccccCCCC---CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
+-+.|..|...+.. .....=|..||..|..+.+.....|..|..++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 34678888777653 3444556778888887655433368888777764
No 146
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=73.07 E-value=6.6 Score=23.10 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=31.1
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
.-+.|..|...+.......=|..||..|..+.+ ...|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCC
Confidence 457888888887754444567788998887644 2456666666654
No 147
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.25 E-value=2.8 Score=21.48 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=27.4
Q ss_pred ccccccccCCC--CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 34 CICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 34 ~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..|+.|...+. ..++..-+..||..| +.|-.|+.++....
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 57 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLADEP 57 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSSCC
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCCCc
Confidence 37888988887 334444567777766 45888888876543
No 148
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=72.14 E-value=2.2 Score=21.52 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=28.7
Q ss_pred ccccccccCCCC-----CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 34 CICPICHDEFKT-----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 34 ~~C~IC~~~~~~-----p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
..|+-|.+.+.. .++..=+..||..| +.|-.|+.++....
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 60 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANKR 60 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTSC
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCCc
Confidence 478999988875 44555666777776 45888988887543
No 149
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.73 E-value=0.43 Score=23.78 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=28.9
Q ss_pred CcccccccccCCCC-Ceec---CCCCcchHHhHHHHhh-----CCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFKT-PVQL---TCCHIFCESCVTKWFD-----REQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~---~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~ 76 (95)
+...|++|.....+ ...+ .|..=||..|+.--.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45689999988743 2344 5666788888743211 34678888653
No 150
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.69 E-value=1.2 Score=27.23 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=27.9
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhh----CCCCCCCCCccC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFD----REQTCPLCRATL 77 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 77 (95)
..|.+|.+.-.--.--.|...||..|+.+-+. ....||.|+..-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 47889986422111125778899999965443 235799997653
No 151
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=71.51 E-value=0.098 Score=27.90 Aligned_cols=40 Identities=30% Similarity=0.778 Sum_probs=19.1
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
..||.|...+... =++.+|..|-..+... ..||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-EECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-ccCcchhhHHH
Confidence 4677777665421 1122344443322222 25666666653
No 152
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.97 E-value=0.56 Score=24.60 Aligned_cols=41 Identities=27% Similarity=0.597 Sum_probs=25.6
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhh----CC-CCCCCCCc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----RE-QTCPLCRA 75 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~~-~~CP~Cr~ 75 (95)
.|.+|...-....++ .|...||..|+.+-+. .. -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566676654333334 6888899999875443 22 47888864
No 153
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=70.87 E-value=0.23 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=12.9
Q ss_pred CCCCcchHHhHHHHhh
Q psy3884 50 TCCHIFCESCVTKWFD 65 (95)
Q Consensus 50 ~CgH~fc~~Ci~~~~~ 65 (95)
.||+.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999877643
No 154
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.80 E-value=1.4 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.512 Sum_probs=22.7
Q ss_pred cccccccccCCCCCeecCC-CCcchHHhHHHHh
Q psy3884 33 GCICPICHDEFKTPVQLTC-CHIFCESCVTKWF 64 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~~C-gH~fc~~Ci~~~~ 64 (95)
..-|.||.+.-. -.-+.| |-.||..|..+.-
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 447999999832 235578 6789999988754
No 155
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.66 E-value=0.76 Score=24.05 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=26.6
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhh----C-CCCCCCCCc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 75 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 75 (95)
.|.||...-....++ .|...||..|+.+-+. . .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 778888653333333 6888999999875333 2 346888853
No 156
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.61 E-value=5.9 Score=21.05 Aligned_cols=49 Identities=20% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCCcccccccccCC--CCCeec---CCCCcchHHhHHHHhh--CCCCCCCCCccCC
Q psy3884 30 LGVGCICPICHDEF--KTPVQL---TCCHIFCESCVTKWFD--REQTCPLCRATLV 78 (95)
Q Consensus 30 ~~~~~~C~IC~~~~--~~p~~~---~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 78 (95)
......|.||...- ....++ .|.-.||..|+..-.. ....||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34567999999764 112233 6888899999964322 2357888865443
No 157
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.56 E-value=1.6 Score=22.11 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=25.5
Q ss_pred CcccccccccCCCC-CeecCCCCcchH-HhHHHHhhCCCCCCCCCc
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCE-SCVTKWFDREQTCPLCRA 75 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~-~Ci~~~~~~~~~CP~Cr~ 75 (95)
+-+.|..|...+.. +....=|..||. .|..+.+ ...|..|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 44678888877765 334445667787 5776533 345666643
No 158
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=70.25 E-value=6 Score=23.57 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=21.5
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
+.|..|...+.......=|..||..|..+.+ ...|..|..++..
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccCC
Confidence 3444444444332122234456777665432 3467777766654
No 159
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=69.79 E-value=2.6 Score=30.73 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=35.4
Q ss_pred cCCCcccccccccCCCCC----------eecCCCCcc--------------------hHHhHHHHhh--------CCCCC
Q psy3884 29 LLGVGCICPICHDEFKTP----------VQLTCCHIF--------------------CESCVTKWFD--------REQTC 70 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~C 70 (95)
...+.-.|+-|+.++.+| --+.||..| |..|..++-. +...|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 445667999999887665 123577666 9999999875 22589
Q ss_pred CCCCccC
Q psy3884 71 PLCRATL 77 (95)
Q Consensus 71 P~Cr~~~ 77 (95)
|.|.-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9997766
No 160
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.46 E-value=5 Score=20.58 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=28.2
Q ss_pred CcccccccccCCCC-CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCC
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 79 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 79 (95)
....|+-|.+.+.. ..+..-+..||..| +.|..|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcCC
Confidence 45589999998863 34445566777766 458889888764
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.20 E-value=10 Score=19.73 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=25.1
Q ss_pred cccccccccCCCC-CeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 33 GCICPICHDEFKT-PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 33 ~~~C~IC~~~~~~-p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
...|+-|.+.+.. ..+..-+..||..| +.|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 4578888887764 34445666666666 3466776666544
No 162
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=68.00 E-value=1.6 Score=26.60 Aligned_cols=45 Identities=18% Similarity=0.462 Sum_probs=30.5
Q ss_pred ccccccccCCCCCe----ec---CCCCcchHHhHHH------Hhh-----CCCCCCCCCccCC
Q psy3884 34 CICPICHDEFKTPV----QL---TCCHIFCESCVTK------WFD-----REQTCPLCRATLV 78 (95)
Q Consensus 34 ~~C~IC~~~~~~p~----~~---~CgH~fc~~Ci~~------~~~-----~~~~CP~Cr~~~~ 78 (95)
..||||...+...- .+ .|..=||..|+.- .+. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 47999998877542 44 4677788888732 111 2579999987544
No 163
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=67.92 E-value=1.8 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.488 Sum_probs=25.6
Q ss_pred cccccccCCC--CCeecCCCCcch--HHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 35 ICPICHDEFK--TPVQLTCCHIFC--ESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 35 ~C~IC~~~~~--~p~~~~CgH~fc--~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
.|+-|.+.+. +..+..-|..|| ..| +.|-.|+.++....
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLIGQK 46 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCTTSC
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCCCCc
Confidence 6777777776 345555666777 666 45777877776443
No 164
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=67.39 E-value=4.1 Score=30.22 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=35.7
Q ss_pred cCCCcccccccccCCCCC----------eecCCCCcc--------------------hHHhHHHHhh--------CCCCC
Q psy3884 29 LLGVGCICPICHDEFKTP----------VQLTCCHIF--------------------CESCVTKWFD--------REQTC 70 (95)
Q Consensus 29 ~~~~~~~C~IC~~~~~~p----------~~~~CgH~f--------------------c~~Ci~~~~~--------~~~~C 70 (95)
...+.-.|+-|+..+.+| --+.||..| |..|..++-. +...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 345667999999887765 133577555 9999999875 22479
Q ss_pred CCCCccCC
Q psy3884 71 PLCRATLV 78 (95)
Q Consensus 71 P~Cr~~~~ 78 (95)
|.|.-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99977653
No 165
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.27 E-value=1.4 Score=23.57 Aligned_cols=47 Identities=15% Similarity=0.446 Sum_probs=32.1
Q ss_pred CcccccccccCCC---CCeec--CCCCcchHHhHHHHhh--------CCCCCCCCCccCC
Q psy3884 32 VGCICPICHDEFK---TPVQL--TCCHIFCESCVTKWFD--------REQTCPLCRATLV 78 (95)
Q Consensus 32 ~~~~C~IC~~~~~---~p~~~--~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 78 (95)
....|.||...-. +.+++ .|...||..|+..-+. ....|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4568999997643 33444 6888999999975432 3357998866543
No 166
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.14 E-value=10 Score=19.30 Aligned_cols=46 Identities=22% Similarity=0.482 Sum_probs=30.1
Q ss_pred CCcccccccccCCCCCeec---CCCCcchHHhHHHH---------hhCCCCCCCCCccC
Q psy3884 31 GVGCICPICHDEFKTPVQL---TCCHIFCESCVTKW---------FDREQTCPLCRATL 77 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~---------~~~~~~CP~Cr~~~ 77 (95)
.+...| ||.........+ .|..=||..|+.-- ......||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345677 898876644444 57777999998411 12467899996543
No 167
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.03 E-value=3.8 Score=20.58 Aligned_cols=41 Identities=17% Similarity=0.498 Sum_probs=27.5
Q ss_pred cccccccccCCC--CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCCc
Q psy3884 33 GCICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 81 (95)
Q Consensus 33 ~~~C~IC~~~~~--~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 81 (95)
...|+-|.+.+. +.++..-|..||..| +.|-.|+.++....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCCCC
Confidence 448999998875 334445666677766 45888888776543
No 168
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.03 E-value=9.9 Score=19.33 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=28.5
Q ss_pred CCcccccccccCC--C-CCeec--CCCCcchHHhHHHHhh--CCCCCCCCCc
Q psy3884 31 GVGCICPICHDEF--K-TPVQL--TCCHIFCESCVTKWFD--REQTCPLCRA 75 (95)
Q Consensus 31 ~~~~~C~IC~~~~--~-~p~~~--~CgH~fc~~Ci~~~~~--~~~~CP~Cr~ 75 (95)
.....|.||.+.- . +..++ .|.-.||..|+..-.. ....||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456899998753 2 23333 6888999999864321 2346777743
No 169
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.91 E-value=1.2 Score=28.15 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=23.9
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhh----C-CCCCCCCCc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 75 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~----~-~~~CP~Cr~ 75 (95)
.|.+|...-.....+ .|...||..|+.+-+. . ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 578887643322233 6888999999975443 2 346999964
No 170
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.22 E-value=11 Score=19.38 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=28.6
Q ss_pred CcccccccccCCC-CCeec---CCCCcchHHhHHHHh-----hCCCCCCCCCccC
Q psy3884 32 VGCICPICHDEFK-TPVQL---TCCHIFCESCVTKWF-----DREQTCPLCRATL 77 (95)
Q Consensus 32 ~~~~C~IC~~~~~-~p~~~---~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~~~ 77 (95)
....| ||..... ....+ .|..=||..|+.--. .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34566 8988764 23334 577678999984211 1346899997654
No 171
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.19 E-value=9.8 Score=20.46 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=26.9
Q ss_pred CcccccccccCCCCCeecC-----CC-CcchHHhHHHHhh--CCCCCCCCCccC
Q psy3884 32 VGCICPICHDEFKTPVQLT-----CC-HIFCESCVTKWFD--REQTCPLCRATL 77 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~-----Cg-H~fc~~Ci~~~~~--~~~~CP~Cr~~~ 77 (95)
+...| ||...... .++. |. .-||..|+.--.. ....||.|+..-
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 44567 99886543 3443 54 4699999862111 235899997643
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=60.86 E-value=5.8 Score=22.26 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=29.3
Q ss_pred cccccccccCCCCC-eecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 33 GCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 33 ~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
...|+-|.+.+... ++..-+..||..| +.|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 45899999988766 3556677788877 45999998886
No 173
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.77 E-value=3.6 Score=20.35 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=29.6
Q ss_pred CcccccccccCCC---CCeec--CCCCcchHHhHHHHh-------hCCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFK---TPVQL--TCCHIFCESCVTKWF-------DREQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~---~p~~~--~CgH~fc~~Ci~~~~-------~~~~~CP~Cr~~ 76 (95)
....|.||..... +..++ .|...||..|+..-+ .....|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4568999997642 22333 688899999987422 234578888554
No 174
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.56 E-value=1.1 Score=22.75 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCCCeec---CCCCcchHHhHHHHhh---CCCCCCCCCc
Q psy3884 30 LGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD---REQTCPLCRA 75 (95)
Q Consensus 30 ~~~~~~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~ 75 (95)
..+...| ||.........+ .|..=||..|+.--.. ....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3455678 998876654455 4666678888742211 2356777743
No 175
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.50 E-value=9.8 Score=20.80 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=24.3
Q ss_pred CcccccccccCCCC---CeecCCCCcchHHhHHHHhhCC
Q psy3884 32 VGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDRE 67 (95)
Q Consensus 32 ~~~~C~IC~~~~~~---p~~~~CgH~fc~~Ci~~~~~~~ 67 (95)
.-+.|..|...+.. .....=|..||..|..+.+...
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 45788888888763 3334456778888887766543
No 176
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=59.10 E-value=1.2 Score=22.41 Aligned_cols=43 Identities=19% Similarity=0.437 Sum_probs=28.2
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 76 (95)
.+..|.||... ...+. .|...||..|+..-+. ....||.|...
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45689999864 22222 6778899999874333 23478888553
No 177
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.94 E-value=8.1 Score=20.41 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=32.3
Q ss_pred CcccccccccCCCCC-eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
.=+.|..|...+... ....=|..||..|..+ .....|..|..++...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 346888888887653 3344567788888743 2346899998888743
No 178
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.80 E-value=0.2 Score=27.61 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=26.1
Q ss_pred ccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 34 ~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
..||+|...+... =++.+|..|-.. +.....||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 6999999876521 123347777432 234467999998875
No 179
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=58.78 E-value=6.6 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=20.1
Q ss_pred CcccccccccCCC-C-CeecCCCCcchHHhHHHHhh
Q psy3884 32 VGCICPICHDEFK-T-PVQLTCCHIFCESCVTKWFD 65 (95)
Q Consensus 32 ~~~~C~IC~~~~~-~-p~~~~CgH~fc~~Ci~~~~~ 65 (95)
.=+.|..|...+. . .....=|..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 3456777777763 2 23444566777777766543
No 180
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.32 E-value=16 Score=17.87 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=18.8
Q ss_pred cccccccCCCC--CeecCCCCcchHHhHHHHhhCCCCCCCCCccCC
Q psy3884 35 ICPICHDEFKT--PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78 (95)
Q Consensus 35 ~C~IC~~~~~~--p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 78 (95)
.|+.|.+.+.. .++..-+..||..| +.|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcCC
Confidence 56666665542 23334455555554 33666666654
No 181
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=57.12 E-value=1.3 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.600 Sum_probs=27.2
Q ss_pred CcccccccccCCCCCeec--CCCCcchHHhHHHHhh----CCCCCCCCCcc
Q psy3884 32 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 76 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 76 (95)
.+..|.+|... ...+. .|...||..|+.+-+. ....||.|...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 34589999874 22222 6888899999874333 22468877543
No 182
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=56.66 E-value=5.5 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=20.1
Q ss_pred cccccccccCCCCCeecCCCCcchH
Q psy3884 33 GCICPICHDEFKTPVQLTCCHIFCE 57 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~~CgH~fc~ 57 (95)
...|..|...-..-+-+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999987666678899999984
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=56.47 E-value=3.6 Score=17.22 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=8.4
Q ss_pred CCCCCCCccCCCC
Q psy3884 68 QTCPLCRATLVDD 80 (95)
Q Consensus 68 ~~CP~Cr~~~~~~ 80 (95)
..||+|+...++.
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 3578887766543
No 184
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=55.44 E-value=30 Score=23.09 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCcc-----cccCCCcccccccccCCCC----C-eecCCCCcchHHhHHH
Q psy3884 4 AKAWWKSFTKLLNNIQLGVSPTK-----ETLLGVGCICPICHDEFKT----P-VQLTCCHIFCESCVTK 62 (95)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~C~IC~~~~~~----p-~~~~CgH~fc~~Ci~~ 62 (95)
-+.|.+++...+........... .........|..|...+.. . .--.||..+|..|...
T Consensus 323 k~~W~~~i~~ai~~~~~~~~~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 323 KKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 35677777766655443222111 1123455799999988753 1 2336999999999753
No 185
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=53.09 E-value=20 Score=18.93 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCcccccccccCCCCCeec-----CCCCcchHHhHHHH
Q psy3884 31 GVGCICPICHDEFKTPVQL-----TCCHIFCESCVTKW 63 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-----~CgH~fc~~Ci~~~ 63 (95)
+..+.|.||.+.-. ...+ .|.-.||..|...-
T Consensus 15 R~~l~C~iC~~~~~-GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 15 RWKLTCYLCKQKGV-GASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCBTTTTBCCS-SCEEECSCTTTCCEEEHHHHHHH
T ss_pred HhcCCCcCCCCCCC-cEeEecCCCCCCCcCcHHHHHHC
Confidence 45679999976421 2233 57788999999753
No 186
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.78 E-value=2.9 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=21.6
Q ss_pred ccccccccCCC-CCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 34 CICPICHDEFK-TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 34 ~~C~IC~~~~~-~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..|+.|.+.+. ...+..-+..||..|+ .|-.|+.++...
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEeCCcccccccC--------ccCCCCCCCCCC
Confidence 36777777664 3334445555555552 366666665543
No 187
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.43 E-value=22 Score=17.83 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=19.5
Q ss_pred CcccccccccCCCC-CeecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 58 (95)
....|..|.....- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45689999986543 3444799999873
No 188
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=51.30 E-value=9.3 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.877 Sum_probs=24.1
Q ss_pred ccccccccCCCCC----------eecCCCCcchHHhHHHHhh
Q psy3884 34 CICPICHDEFKTP----------VQLTCCHIFCESCVTKWFD 65 (95)
Q Consensus 34 ~~C~IC~~~~~~p----------~~~~CgH~fc~~Ci~~~~~ 65 (95)
.+||+|.....+. ..++||-.||..|...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~ 55 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR 55 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhc
Confidence 4788888665431 5779998899999986654
No 189
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=49.56 E-value=0.67 Score=24.60 Aligned_cols=31 Identities=26% Similarity=0.716 Sum_probs=20.2
Q ss_pred cccccccCCCC-----CeecC-CCCcchHHhHHHHhh
Q psy3884 35 ICPICHDEFKT-----PVQLT-CCHIFCESCVTKWFD 65 (95)
Q Consensus 35 ~C~IC~~~~~~-----p~~~~-CgH~fc~~Ci~~~~~ 65 (95)
-||-|...+.. .+.-+ |++.||..|-..|-+
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 37766654321 23334 999999999887733
No 190
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=47.45 E-value=11 Score=18.36 Aligned_cols=40 Identities=18% Similarity=0.561 Sum_probs=27.6
Q ss_pred cccccccccCCCCC--eecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 33 GCICPICHDEFKTP--VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 33 ~~~C~IC~~~~~~p--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
...|+.|...+... ++..=|..||..|. .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 44899999887743 34456666777664 588888877654
No 191
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.16 E-value=12 Score=18.68 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred CcccccccccCCCCC-eec----CCCCcchHHhHH
Q psy3884 32 VGCICPICHDEFKTP-VQL----TCCHIFCESCVT 61 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p-~~~----~CgH~fc~~Ci~ 61 (95)
....|++|...+... ..+ .|..-||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345899999987543 233 466669999983
No 192
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=45.69 E-value=9.9 Score=15.88 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=13.2
Q ss_pred cccccccCCCCC-eecCCCCcchHHh
Q psy3884 35 ICPICHDEFKTP-VQLTCCHIFCESC 59 (95)
Q Consensus 35 ~C~IC~~~~~~p-~~~~CgH~fc~~C 59 (95)
.|+.|....-.. .+..=|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 677776654432 2334455566555
No 193
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.67 E-value=12 Score=19.01 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=19.1
Q ss_pred CcccccccccCCCCC----eecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKTP----VQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p----~~~~CgH~fc~~ 58 (95)
....|..|.....-+ ..-.||.+||..
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhc
Confidence 456899999876644 233799999873
No 194
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=43.21 E-value=31 Score=20.53 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=25.0
Q ss_pred CCcccccccccCCCCC-eecCCCCcchHHhHHHHhh
Q psy3884 31 GVGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFD 65 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p-~~~~CgH~fc~~Ci~~~~~ 65 (95)
..-+.|..|...+... ....=|..||..|..+.+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 3457888998887764 3334567899999987664
No 195
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.23 E-value=6.8 Score=21.41 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=7.0
Q ss_pred CCCCCCCccCC
Q psy3884 68 QTCPLCRATLV 78 (95)
Q Consensus 68 ~~CP~Cr~~~~ 78 (95)
..||+|.+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 45777766655
No 196
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.02 E-value=21 Score=18.98 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=20.2
Q ss_pred CcccccccccCCCC--CeecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKT--PVQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~--p~~~~CgH~fc~~ 58 (95)
....|..|.....- +..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 34689999986553 6666899999974
No 197
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.16 E-value=6.5 Score=18.75 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=21.4
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHHHHhhCCCCCCCCCccCCCC
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 80 (95)
..+.|.+|...|.....+.- .....|+.|...+...
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSCC
T ss_pred CCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcCH
Confidence 34689999888765433321 3445666666555543
No 198
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=40.84 E-value=16 Score=19.66 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=18.6
Q ss_pred cccccccccCCCC-CeecC--CCCcchHH
Q psy3884 33 GCICPICHDEFKT-PVQLT--CCHIFCES 58 (95)
Q Consensus 33 ~~~C~IC~~~~~~-p~~~~--CgH~fc~~ 58 (95)
...|..|...-.+ -+-+. |||++|..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4589999954444 46677 99999843
No 199
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=39.69 E-value=4.2 Score=17.79 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=12.1
Q ss_pred ecCCCCcchHHhHHHH
Q psy3884 48 QLTCCHIFCESCVTKW 63 (95)
Q Consensus 48 ~~~CgH~fc~~Ci~~~ 63 (95)
..+|.|++|..|--+.
T Consensus 9 mascehtmcgycqgpl 24 (40)
T 1erd_A 9 MASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHHTCGGGGGGSCHHH
T ss_pred HHhccccccccccCCe
Confidence 3479999998886554
No 200
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=38.13 E-value=21 Score=17.72 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=10.0
Q ss_pred CCCcccccccccC
Q psy3884 30 LGVGCICPICHDE 42 (95)
Q Consensus 30 ~~~~~~C~IC~~~ 42 (95)
..+...|.||...
T Consensus 6 ~~d~~~C~iC~KT 18 (62)
T 2a20_A 6 KGDAPTCGICHKT 18 (62)
T ss_dssp SSCCCCCSSSSCS
T ss_pred cCCcchhhhhccc
Confidence 3456799999976
No 201
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.50 E-value=42 Score=16.67 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=23.7
Q ss_pred Ccccccc--cccCCCCCeecC-CCCcchHHhHHHHhhCCCCCCC
Q psy3884 32 VGCICPI--CHDEFKTPVQLT-CCHIFCESCVTKWFDREQTCPL 72 (95)
Q Consensus 32 ~~~~C~I--C~~~~~~p~~~~-CgH~fc~~Ci~~~~~~~~~CP~ 72 (95)
....|+. |...-..|..=. |+..||.. -.+.....|+.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~---HR~~e~H~C~~ 51 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK---HRHPLDHDCSG 51 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH---HHSTTSSCCCS
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc---cCCccCCcCCC
Confidence 3458888 887644454444 89998873 33344566763
No 202
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=35.66 E-value=26 Score=16.34 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=22.4
Q ss_pred cccccccCCCCC-eec----CCCCcchHHhHHH----HhhCCCCCCCCC
Q psy3884 35 ICPICHDEFKTP-VQL----TCCHIFCESCVTK----WFDREQTCPLCR 74 (95)
Q Consensus 35 ~C~IC~~~~~~p-~~~----~CgH~fc~~Ci~~----~~~~~~~CP~Cr 74 (95)
.|.+|.....+. ..+ .|..=||..|+.- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 466787766432 233 3555578888631 112556788874
No 203
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.54 E-value=21 Score=12.88 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=7.8
Q ss_pred CCCCCCCccCCCC
Q psy3884 68 QTCPLCRATLVDD 80 (95)
Q Consensus 68 ~~CP~Cr~~~~~~ 80 (95)
..|+.|...+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 3577776666543
No 204
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=34.71 E-value=33 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=18.9
Q ss_pred CcccccccccCCCCCeecCCCCcchH
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCE 57 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~ 57 (95)
....|..|...-..-+-+.|||+.|.
T Consensus 33 ~~~~C~~C~~~~~LwlCL~CG~vgCg 58 (129)
T 2g45_A 33 CGWKCSKCDMRENLWLNLTDGSILCG 58 (129)
T ss_dssp CBCCCSSSSCCSSEEEETTTCCEEEC
T ss_pred CCCcCccccCcCceEEeccCCccccC
Confidence 34579999877544567799998773
No 205
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=34.42 E-value=60 Score=17.82 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHhhccCCCCCcccccCCCcccccccccCCCCCeec--CCCC----cchHHhHHHHhhCCCCCCCCCccCCCCcc
Q psy3884 12 TKLLNNIQLGVSPTKETLLGVGCICPICHDEFKTPVQL--TCCH----IFCESCVTKWFDREQTCPLCRATLVDDPA 82 (95)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~--~CgH----~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 82 (95)
+..+..-.....+..-.-..+.+.|||-++..++.+.+ .=|- .|=..-+.+....+..=|+-|.++....+
T Consensus 6 ~~kI~~c~F~V~~~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMI 82 (102)
T 2kkx_A 6 QNKISQCKFSVCPERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASII 82 (102)
T ss_dssp HHHHHHHCEECCTTTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTE
T ss_pred HHHHHhcccccChhhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhE
Confidence 33344444444555445556778999999999888766 2222 25566777777777777899999887644
No 206
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=34.24 E-value=8 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=19.7
Q ss_pred CcccccccccCCCCCeecCCCCcchHHhHH
Q psy3884 32 VGCICPICHDEFKTPVQLTCCHIFCESCVT 61 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~~~~CgH~fc~~Ci~ 61 (95)
....|++|.+.+-+. |-..|..|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 556899999987665 8888998863
No 207
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.77 E-value=9.9 Score=15.50 Aligned_cols=10 Identities=30% Similarity=1.135 Sum_probs=5.4
Q ss_pred CCCCCCccCC
Q psy3884 69 TCPLCRATLV 78 (95)
Q Consensus 69 ~CP~Cr~~~~ 78 (95)
.||+|.+..+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4666655443
No 208
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.75 E-value=51 Score=17.01 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=18.6
Q ss_pred CcccccccccCCCC-CeecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 58 (95)
....|..|...... +..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 34589999886442 4445699999873
No 209
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.44 E-value=56 Score=16.87 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=19.3
Q ss_pred CcccccccccCCCC-CeecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 58 (95)
....|..|.....- +..-.||.+||..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cCccchhhcCcccccceEeccCCEeccc
Confidence 45689999876543 3444799999874
No 210
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=32.27 E-value=12 Score=22.98 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=24.0
Q ss_pred ccccCCCcccccccccCCCCCe-ecCCCCcchHHhHH
Q psy3884 26 KETLLGVGCICPICHDEFKTPV-QLTCCHIFCESCVT 61 (95)
Q Consensus 26 ~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fc~~Ci~ 61 (95)
..........|++|.+.+-++. ++.=|-..|..|..
T Consensus 165 ~~~~~~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 165 PVKKNGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp CCCCCCCEEECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred CCCCCCCceECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 3334345678999999877652 33346678888874
No 211
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.18 E-value=52 Score=16.47 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=19.6
Q ss_pred CcccccccccCCCC-CeecCCCCcchHH
Q psy3884 32 VGCICPICHDEFKT-PVQLTCCHIFCES 58 (95)
Q Consensus 32 ~~~~C~IC~~~~~~-p~~~~CgH~fc~~ 58 (95)
....|..|.....- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 34689999986543 3444799999974
No 212
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=31.85 E-value=20 Score=19.84 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCcccccccccCCCCCeec-----CCCCcchHHhHHHHhh----CCCCCCCCCcc
Q psy3884 31 GVGCICPICHDEFKTPVQL-----TCCHIFCESCVTKWFD----REQTCPLCRAT 76 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~-----~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 76 (95)
..+..|.+|.+. ..++ .|-..||..|+. +. ....||.|.-.
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 455689999842 2233 266778888986 32 22357765443
No 213
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=31.80 E-value=20 Score=19.15 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=25.5
Q ss_pred CCcccccccccCCCCCeec---CCC---CcchHHhHHHHh--hCCCCCCC-CCc
Q psy3884 31 GVGCICPICHDEFKTPVQL---TCC---HIFCESCVTKWF--DREQTCPL-CRA 75 (95)
Q Consensus 31 ~~~~~C~IC~~~~~~p~~~---~Cg---H~fc~~Ci~~~~--~~~~~CP~-Cr~ 75 (95)
.+...| ||....... ++ .|. .-||..|+.--. .....||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 445677 898754443 44 333 468999985111 13457998 864
No 214
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.29 E-value=14 Score=18.80 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=7.3
Q ss_pred CCCCCCCCccCC
Q psy3884 67 EQTCPLCRATLV 78 (95)
Q Consensus 67 ~~~CP~Cr~~~~ 78 (95)
.-.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 346777766654
No 215
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=30.91 E-value=38 Score=20.71 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=6.8
Q ss_pred CCCCCCCcc
Q psy3884 68 QTCPLCRAT 76 (95)
Q Consensus 68 ~~CP~Cr~~ 76 (95)
..||.|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999764
No 216
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=30.24 E-value=54 Score=17.18 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=22.2
Q ss_pred CcccccccccCCCCCe------ecCCCCcchHHhHHHH
Q psy3884 32 VGCICPICHDEFKTPV------QLTCCHIFCESCVTKW 63 (95)
Q Consensus 32 ~~~~C~IC~~~~~~p~------~~~CgH~fc~~Ci~~~ 63 (95)
....|.+|.+...... -+=|+-+.|..|+...
T Consensus 37 ~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 3458999988755432 2248888999998764
No 217
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.41 E-value=11 Score=13.68 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=5.8
Q ss_pred CCCCCCccCCC
Q psy3884 69 TCPLCRATLVD 79 (95)
Q Consensus 69 ~CP~Cr~~~~~ 79 (95)
.|+.|...+..
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 45566555543
No 218
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.32 E-value=15 Score=18.69 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=8.9
Q ss_pred CCCCCCCccCC
Q psy3884 68 QTCPLCRATLV 78 (95)
Q Consensus 68 ~~CP~Cr~~~~ 78 (95)
..||+|.+++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999998875
No 219
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=28.16 E-value=49 Score=16.82 Aligned_cols=31 Identities=19% Similarity=0.696 Sum_probs=22.8
Q ss_pred CcccccccccCC-CCC--eecCCCCcchHHhHHH
Q psy3884 32 VGCICPICHDEF-KTP--VQLTCCHIFCESCVTK 62 (95)
Q Consensus 32 ~~~~C~IC~~~~-~~p--~~~~CgH~fc~~Ci~~ 62 (95)
.+..|.+|.+.. ... .-+.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 356899998754 222 4558999999999975
No 220
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.80 E-value=22 Score=17.13 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=9.2
Q ss_pred CCCCCCCCCccCC
Q psy3884 66 REQTCPLCRATLV 78 (95)
Q Consensus 66 ~~~~CP~Cr~~~~ 78 (95)
.--.||.|+.++.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3357999988754
No 221
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.77 E-value=11 Score=22.14 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=8.1
Q ss_pred CCCCCCCccCC
Q psy3884 68 QTCPLCRATLV 78 (95)
Q Consensus 68 ~~CP~Cr~~~~ 78 (95)
..||.|..++.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 47999987753
No 222
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.76 E-value=24 Score=17.82 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.6
Q ss_pred CCCCCCCCCccCC
Q psy3884 66 REQTCPLCRATLV 78 (95)
Q Consensus 66 ~~~~CP~Cr~~~~ 78 (95)
.--.||.|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 3457999988765
No 223
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.51 E-value=30 Score=12.45 Aligned_cols=10 Identities=30% Similarity=1.155 Sum_probs=4.8
Q ss_pred cccccccCCC
Q psy3884 35 ICPICHDEFK 44 (95)
Q Consensus 35 ~C~IC~~~~~ 44 (95)
.|.+|...|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 4555554443
No 224
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.22 E-value=23 Score=17.85 Aligned_cols=11 Identities=55% Similarity=1.322 Sum_probs=8.7
Q ss_pred CCCCCCCccCC
Q psy3884 68 QTCPLCRATLV 78 (95)
Q Consensus 68 ~~CP~Cr~~~~ 78 (95)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 46999988765
No 225
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.49 E-value=3.8 Score=16.27 Aligned_cols=10 Identities=50% Similarity=1.657 Sum_probs=5.9
Q ss_pred chHHhHHHHh
Q psy3884 55 FCESCVTKWF 64 (95)
Q Consensus 55 fc~~Ci~~~~ 64 (95)
||..|-.+|+
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 5666655554
No 226
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.32 E-value=26 Score=20.90 Aligned_cols=9 Identities=44% Similarity=1.246 Sum_probs=6.6
Q ss_pred CCCCCCCcc
Q psy3884 68 QTCPLCRAT 76 (95)
Q Consensus 68 ~~CP~Cr~~ 76 (95)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 479999754
No 227
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.67 E-value=32 Score=15.92 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=9.3
Q ss_pred cCCCcccccccccC
Q psy3884 29 LLGVGCICPICHDE 42 (95)
Q Consensus 29 ~~~~~~~C~IC~~~ 42 (95)
...++..||+|...
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 34556688888753
No 228
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.85 E-value=35 Score=12.05 Aligned_cols=9 Identities=33% Similarity=1.088 Sum_probs=3.9
Q ss_pred cccccccCC
Q psy3884 35 ICPICHDEF 43 (95)
Q Consensus 35 ~C~IC~~~~ 43 (95)
.|.+|...|
T Consensus 3 ~C~~C~k~f 11 (27)
T 1znf_A 3 KCGLCERSF 11 (27)
T ss_dssp BCSSSCCBC
T ss_pred cCCCCCCcC
Confidence 344444443
No 229
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.31 E-value=33 Score=17.23 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=7.2
Q ss_pred CCCCCCCCCccCC
Q psy3884 66 REQTCPLCRATLV 78 (95)
Q Consensus 66 ~~~~CP~Cr~~~~ 78 (95)
.--.||.|+.++.
T Consensus 9 eiL~CP~ck~~L~ 21 (67)
T 2jny_A 9 EVLACPKDKGPLR 21 (67)
T ss_dssp CCCBCTTTCCBCE
T ss_pred HHhCCCCCCCcCe
Confidence 3345666666553
No 230
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.09 E-value=24 Score=17.88 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=9.5
Q ss_pred CCCCCCCCCccCC
Q psy3884 66 REQTCPLCRATLV 78 (95)
Q Consensus 66 ~~~~CP~Cr~~~~ 78 (95)
.--.||.|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 3357999988765
No 231
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=21.99 E-value=20 Score=19.73 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=25.2
Q ss_pred cccccccCCCCCeec---CCCCcchHHhHHHHhhC----CCCCCCCCcc
Q psy3884 35 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFDR----EQTCPLCRAT 76 (95)
Q Consensus 35 ~C~IC~~~~~~p~~~---~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 76 (95)
.|.||...-....++ .|...||..|+.+-+.. ...||.|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 577777654333333 67788999998643332 2357777543
No 232
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.89 E-value=48 Score=12.77 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=8.5
Q ss_pred cccccccccCCCC
Q psy3884 33 GCICPICHDEFKT 45 (95)
Q Consensus 33 ~~~C~IC~~~~~~ 45 (95)
.+.|.+|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4577777776654
No 233
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=21.40 E-value=30 Score=14.66 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=13.9
Q ss_pred cccccccccCCCCCeecCCCCcch
Q psy3884 33 GCICPICHDEFKTPVQLTCCHIFC 56 (95)
Q Consensus 33 ~~~C~IC~~~~~~p~~~~CgH~fc 56 (95)
--+|++|...-...-.-.|-..+|
T Consensus 9 fhecalcysitdpgerqrcidmyc 32 (36)
T 2jyp_A 9 FHECALCYSITDPGERQRCIDMYC 32 (36)
T ss_dssp TTCCSSSTTTTTTTCTTCGGGTTT
T ss_pred cchheeEEeecCcchhhhhhhhee
Confidence 347899987654433444544444
No 234
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.13 E-value=72 Score=16.81 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=19.6
Q ss_pred CCcccccc--cccCCCCCeecC-CCCcchHH
Q psy3884 31 GVGCICPI--CHDEFKTPVQLT-CCHIFCES 58 (95)
Q Consensus 31 ~~~~~C~I--C~~~~~~p~~~~-CgH~fc~~ 58 (95)
.....|+. |...-..|..=. |+..||..
T Consensus 23 ~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 34568988 987755565555 99999873
No 235
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.59 E-value=47 Score=11.99 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=4.0
Q ss_pred cccccccCC
Q psy3884 35 ICPICHDEF 43 (95)
Q Consensus 35 ~C~IC~~~~ 43 (95)
.|..|...|
T Consensus 4 ~C~~C~k~f 12 (30)
T 1paa_A 4 ACGLCNRAF 12 (30)
T ss_dssp BCTTTCCBC
T ss_pred CCcccCccc
Confidence 444444443
No 236
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.52 E-value=50 Score=12.86 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=8.3
Q ss_pred cccccccccCCCC
Q psy3884 33 GCICPICHDEFKT 45 (95)
Q Consensus 33 ~~~C~IC~~~~~~ 45 (95)
.+.|++|...|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4577777666654
No 237
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.38 E-value=46 Score=11.86 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=8.2
Q ss_pred CCCCCCCccCCCC
Q psy3884 68 QTCPLCRATLVDD 80 (95)
Q Consensus 68 ~~CP~Cr~~~~~~ 80 (95)
..|+.|...+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4577777666544
No 238
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.04 E-value=41 Score=15.92 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=9.7
Q ss_pred cCCCcccccccccC
Q psy3884 29 LLGVGCICPICHDE 42 (95)
Q Consensus 29 ~~~~~~~C~IC~~~ 42 (95)
.+.++..||+|...
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 34566789999764
No 239
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=24.66 E-value=23 Score=12.96 Aligned_cols=12 Identities=25% Similarity=0.833 Sum_probs=6.5
Q ss_pred ccccccccCCCC
Q psy3884 34 CICPICHDEFKT 45 (95)
Q Consensus 34 ~~C~IC~~~~~~ 45 (95)
+.|.+|...|..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 356666555543
Done!