RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3884
(95 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 53.1 bits (127), Expect = 2e-11
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATL 77
+C IC + K C H+ C SC+T W + Q CP CR +
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 51.9 bits (124), Expect = 3e-11
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 36 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
CPIC ++ C H FC C+T+W + TCPLC+ +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 50.7 bits (121), Expect = 1e-10
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATL 77
C IC PV+ +C H+FC C+ + CP CR
Sbjct: 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 49.9 bits (119), Expect = 2e-10
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 83
C C E K P L C H C C+ CP+C+A
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT 53
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 50.5 bits (120), Expect = 3e-10
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 36 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ---TCPLCRATL 77
CPIC + K PV C HIFC+ C+ K ++++ CPLC+ +
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 49.1 bits (117), Expect = 3e-10
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 36 CPICHDEFK---TPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLV 78
C +C E + L C H F CV W TCPLCR T+V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 41.6 bits (97), Expect = 5e-07
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 74
CPI + K PV ++ + S + KW D
Sbjct: 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 49
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 41.3 bits (96), Expect = 7e-07
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 34 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRA 75
E T C H F C+++W Q CPL
Sbjct: 40 ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 37.5 bits (86), Expect = 2e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQ 93
C C + + PV L C HIFC +CV+ CP+C + +Q
Sbjct: 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLKINRQLDSMIQ 81
Query: 94 IF 95
+
Sbjct: 82 LC 83
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 35.9 bits (82), Expect = 4e-05
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 36 CPICHDEFKTP-----VQLTCCHIFCESCVTKWFD-REQTCPLCRATL 77
CP C + C H CESCV F CP C L
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 36.3 bits (83), Expect = 7e-05
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCE-SCVTKWFDREQTCPLCR 74
+ PI PV L + + S + + +QT P R
Sbjct: 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR 64
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 34.7 bits (79), Expect = 1e-04
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 35 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 77
+C I + PV IF +S + ++ P+ L
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 34.7 bits (79), Expect = 1e-04
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 36 CPICHDEF----KTPVQLTCCHIFCESCVTKWFDREQT-CPLCRATLVDD 80
CP+C + TC + C C + E CP CR +D
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 33.7 bits (76), Expect = 4e-04
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 35 ICPICHDEFKTP-----VQLTCCHIFCESCVTKWFDREQ--TCPLCRAT 76
+C IC++E SC++ W + C +C
Sbjct: 8 VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 33.5 bits (75), Expect = 9e-04
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 49 LTCCHIFCESCVTKWFDREQ-----TCPLCRA 75
C H F C+ + CP C+
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 31.0 bits (69), Expect = 0.006
Identities = 3/39 (7%), Positives = 8/39 (20%)
Query: 35 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 73
I + + P + + + R
Sbjct: 9 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPV 47
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.9 bits (64), Expect = 0.034
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 36 CPICHDEFK---TPVQLTCCHIFCESCVTKWFD--------REQTCPLCR 74
C +C E+ C IFC C+ ++ + +CP
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 130
Score = 28.8 bits (64), Expect = 0.055
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 2 QAAKAWWKSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFK 44
A++++ L G + VG C CHD+F+
Sbjct: 85 AKGMAFFEAVAALEPAAGAGQKELAAAVGKVGGTCKSCHDDFR 127
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum
[TaxId: 1083]}
Length = 127
Score = 27.7 bits (61), Expect = 0.12
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 2 QAAKAWWKSFTKLLNNIQLGVSPTKETLLGVGCICPICHDEFK 44
+ KA TKL + G K G +C CH+EFK
Sbjct: 83 EGWKALATESTKLAAAAKAGPDALKAQAAATGKVCKACHEEFK 125
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId:
1061]}
Length = 129
Score = 26.1 bits (57), Expect = 0.51
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 MQAAKAWWKSFTKLLNNIQLG-VSPTKETLLGVGCICPICHDEFK 44
KA ++ ++ G + L +G C CHD+++
Sbjct: 82 GAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYR 126
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.1 bits (54), Expect = 1.0
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 36 CPICHDEFKTPVQ-----LTCCHIFCESCVTK 62
C +C ++ C C C +
Sbjct: 51 CILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 82
>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus
[TaxId: 28068]}
Length = 128
Score = 24.5 bits (53), Expect = 1.9
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1 MQAAKAWWKSFTKLLNNIQLG-VSPTKETLLGVGCICPICHDEFK 44
AA + + KL + G + K + G C CHD+FK
Sbjct: 83 KAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGGACKGCHDKFK 127
>d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine
acetyltransferase) {Streptomyces clavuligerus [TaxId:
1901]}
Length = 383
Score = 23.9 bits (51), Expect = 3.6
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 14/75 (18%)
Query: 28 TLLGVGCICPICHDEFKTPVQLT-------------CCHIFCESCVTKWFDREQTCPLCR 74
L G + EF+ + E VT D Q + +
Sbjct: 218 VLFANGLAGEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGK 277
Query: 75 ATLVDDPAWRDGATS 89
V+ P +
Sbjct: 278 TV-VNSPLVKTAVHG 291
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Length = 125
Score = 23.7 bits (51), Expect = 3.6
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 MQAAKAWWKSFTKLLNNIQLG-VSPTKETLLGVGCICPICHDEFK 44
Q +A+ + KL G + + VG C CHD ++
Sbjct: 80 KQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDAYR 124
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 22.6 bits (48), Expect = 4.8
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 36 CPICHDEFKTPVQ----LTCCHIFCESCVTKWFDREQTCPLCRATLV 78
C C F + L C FC +C ++ + + C LC+
Sbjct: 3 CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRA 49
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId:
1049]}
Length = 131
Score = 23.4 bits (50), Expect = 5.2
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 2 QAAKAWWKSFTKLLNNIQLG-VSPTKETLLGVGCICPICHDEFK 44
+ A+ + + L G K VG C CH++++
Sbjct: 86 KIAREFVGAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYR 129
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 23.2 bits (49), Expect = 7.1
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 21 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 80
G +P I K V + T + + PL R
Sbjct: 76 GSTPNGNDYDRDVVIISTLRL-DKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVI 134
Query: 81 PAWRDGAT 88
+ GA+
Sbjct: 135 GSSCIGAS 142
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 22.9 bits (49), Expect = 7.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 53 HIFCESCVTKWFDREQTCPLCRAT 76
++ C C +W C C +
Sbjct: 190 YLSCSLCACEWHYVRIKCSHCEES 213
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 22.5 bits (48), Expect = 8.9
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 70 CPLCRATLVDDPAWR 84
CP C++ +++P ++
Sbjct: 87 CPKCKSEWIEEPRFK 101
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 22.9 bits (48), Expect = 9.0
Identities = 5/58 (8%), Positives = 11/58 (18%)
Query: 21 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 78
+ + I + + + S V + AT
Sbjct: 138 NATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPF 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.138 0.501
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 393,291
Number of extensions: 16217
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 58
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)