BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3887
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56966|GGPPS_BOVIN Geranylgeranyl pyrophosphate synthase OS=Bos taurus GN=GGPS1 PE=1
SV=2
Length = 300
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 164 ESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
E L L+ P A+ QLLELH+GQG++IYWRDNYTCP+EEEY+ M ++ G G
Sbjct: 101 EKVLTLNHP---DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFG 157
>sp|O95749|GGPPS_HUMAN Geranylgeranyl pyrophosphate synthase OS=Homo sapiens GN=GGPS1 PE=1
SV=1
Length = 300
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 164 ESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
E L L P A+ QLLELH+GQG++IYWRDNYTCP+EEEY+ M ++ G G
Sbjct: 101 EKVLTLDHP---DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFG 157
>sp|Q6F596|GGPPS_RAT Geranylgeranyl pyrophosphate synthase OS=Rattus norvegicus GN=Ggps1
PE=2 SV=1
Length = 300
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 164 ESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
E L L P A+ QLLELH+GQG++IYWRD YTCP+EEEY+ M ++ G G
Sbjct: 101 EKVLTLDHP---DAVKLFTRQLLELHQGQGLDIYWRDTYTCPTEEEYKAMVLQKTGGLFG 157
>sp|Q9WTN0|GGPPS_MOUSE Geranylgeranyl pyrophosphate synthase OS=Mus musculus GN=Ggps1 PE=2
SV=1
Length = 300
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 164 ESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
E L L P A+ QLLELH+GQG++IYWRD YTCP+EEEY+ M ++ G G
Sbjct: 101 EKVLTLDHP---DAVKLFTRQLLELHQGQGLDIYWRDTYTCPTEEEYKAMVLQKTGGLFG 157
>sp|P24322|GGPPS_NEUCR Geranylgeranyl pyrophosphate synthase OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=al-3 PE=2 SV=2
Length = 433
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVG 219
A+S +E+LL LHRGQGM+++WRD TCP+E++Y M G
Sbjct: 233 AVSIFSEELLNLHRGQGMDLFWRDTLTCPTEDDYLEMVSNKTG 275
>sp|Q9P885|GGPPS_MUCCL Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f.
lusitanicus GN=carG PE=1 SV=1
Length = 303
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 182 AEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 214
E+L+ LHRGQG+E+YWRD+ TCP+EEEY M
Sbjct: 121 TEELINLHRGQGIELYWRDSLTCPTEEEYIDMV 153
>sp|Q758K0|GGPPS_ASHGO Geranylgeranyl pyrophosphate synthase OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=BTS1 PE=3 SV=1
Length = 320
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 172 PLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVG 219
PL + L E+++ LHRGQG++IYWRD +T PSE +Y M + G
Sbjct: 124 PLQDL-LKVFNEEMMNLHRGQGLDIYWRDTFTVPSEHDYLRMVMHKTG 170
>sp|B2DBE9|GGS4_PHOAM Geranylgeranyl pyrophosphate synthase D OS=Phomopsis amygdali
GN=GGS-D PE=1 SV=1
Length = 424
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVG 219
AL ++L LHRGQG E+YWRD CP+E+EY M G
Sbjct: 234 ALEVFTAEMLNLHRGQGQELYWRDTLKCPTEDEYLKMVSNKTG 276
>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi
GN=GGS PE=3 SV=1
Length = 418
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 181 IAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
+++L+ LHRGQGM+++W D TCP+EE+Y M VG G
Sbjct: 233 FSDELVNLHRGQGMDLFWCDTLTCPTEEDYLEM----VGNKTG 271
>sp|Q54BK1|GGPPS_DICDI Geranylgeranyl pyrophosphate synthase OS=Dictyostelium discoideum
GN=ggps1 PE=3 SV=1
Length = 303
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 214
A + E+L+ LHRGQG +I+WRD T PSE+EY M
Sbjct: 118 ATTIFIEELIRLHRGQGYDIFWRDTNTSPSEQEYMNMV 155
>sp|Q12051|GGPPS_YEAST Geranylgeranyl pyrophosphate synthase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BTS1 PE=1 SV=1
Length = 335
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 165 SSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNY--TCPSEEEYRTMTIRTVG 219
S L PL ++ E+L+ LHRGQG++IYWRD P++E Y M + G
Sbjct: 115 SQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTG 171
>sp|A2PZA5|FUSS_PHOAM Fusicoccadiene synthase OS=Phomopsis amygdali GN=PaFS PE=1 SV=1
Length = 719
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 174 SGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGR 220
+G ++ ++ ++ L +GQ M+++W N PSEEEY M + G+
Sbjct: 518 AGESVQEVMNSIMILFQGQAMDLFWTYNGHVPSEEEYYRMIDQKTGQ 564
>sp|A6LPJ1|GLMU_CLOB8 Bifunctional protein GlmU OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=glmU PE=3 SV=1
Length = 455
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 46 DTALQSDKTFEK-YRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTEDSKKKLV 104
DT L T E+ + E I N++ + ++ ++N PT R+VRT D K+V
Sbjct: 103 DTPLIKQSTIERLFNEHIEAKNSATI---------LTAIVNDPTGYGRIVRTNDGVSKIV 153
Query: 105 ALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINRF 139
+ + +M + GI+ F + LL +N+
Sbjct: 154 EHKDCTEEELKINEMNS-GIYCFDIELLVDALNKI 187
>sp|P73515|SPKE_SYNY3 Serine/threonine-protein kinase-like protein E OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=spkE PE=3 SV=1
Length = 614
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 87 PTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD--GIFLFLLRLLDPEINRFKKYRR 144
P++IMR RT D LV T + S G+ R D G+ L + LL E+N +
Sbjct: 144 PSSIMR--RTVDGLPVLVDFTHSQYYSGTPGEDRRDLHGLGLGAIALLTGEVNPNPPWEN 201
Query: 145 PLSGIALSQIALKVGLSLYESSLLLSRPLSGIALSQIAEQLL 186
LS +ALSQ ++ L L L+ P L+ + + L
Sbjct: 202 LLSSVALSQEFRQLLLKLLAWPPLVDWPTLTDNLNNLPQHFL 243
>sp|P25257|T2B1_HERAU Type-2 restriction enzyme HgiBI OS=Herpetosiphon aurantiacus
GN=hgiBIR PE=4 SV=1
Length = 274
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 34/176 (19%)
Query: 67 ASLLRSGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTW-----VMFQSHRAGKMRT 121
+SL + GDL H S++ P +IMRL R E S + T+ ++ H A +R
Sbjct: 42 SSLSKDGDLKPFHASLI---PASIMRLNRFERSLSTGLGSTFEECTRLIALDHHAVALRN 98
Query: 122 DGIFLFL-------LRLLDPEINRFKKYRRPLSGIALSQIALKVGLSLYESSLLLSRPLS 174
I L + L I+R K++ P L QI S PL+
Sbjct: 99 YDIQAALDQAQWAAIDQLISTIDRGLKHQTPSLNQMLEQIQ--------------SIPLT 144
Query: 175 GIALSQIAEQLLELHRGQGMEIYWRDNYTCPS-----EEEYRTMTIRTVGRSVGYP 225
GI + I L + R G E+++ PS E R + I T+ + P
Sbjct: 145 GILETHIVRADLYIQRHDGSELFFEIKSPKPSKGQCLEVMQRLLRIYTIKQQSAVP 200
>sp|Q1B8V9|POTA_MYCSS Spermidine/putrescine import ATP-binding protein PotA
OS=Mycobacterium sp. (strain MCS) GN=potA PE=3 SV=1
Length = 388
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 118 KMRTDGIFLFLLRLLDPEINRFKKYRRP--LSGIALSQIALKVGLSLYESSLLLSRPLSG 175
K R D + L ++RL D F K R+P LSG ++AL L Y S+LLL PL
Sbjct: 124 KRRVDEL-LEVVRLTD-----FAK-RKPGQLSGGQQQRVALARALVNYPSALLLDEPLGA 176
Query: 176 IALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
+ L EL R Q E+ Y +EE TM+ R + G
Sbjct: 177 LDLKLRHAMQFELKRIQ-REVGITFIYVTHDQEEALTMSDRIAVMNAG 223
>sp|A1UG51|POTA_MYCSK Spermidine/putrescine import ATP-binding protein PotA
OS=Mycobacterium sp. (strain KMS) GN=potA PE=3 SV=1
Length = 388
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 118 KMRTDGIFLFLLRLLDPEINRFKKYRRP--LSGIALSQIALKVGLSLYESSLLLSRPLSG 175
K R D + L ++RL D F K R+P LSG ++AL L Y S+LLL PL
Sbjct: 124 KRRVDEL-LEVVRLTD-----FAK-RKPGQLSGGQQQRVALARALVNYPSALLLDEPLGA 176
Query: 176 IALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVG 223
+ L EL R Q E+ Y +EE TM+ R + G
Sbjct: 177 LDLKLRHAMQFELKRIQ-REVGITFIYVTHDQEEALTMSDRIAVMNAG 223
>sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1
Length = 2380
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 30/156 (19%)
Query: 27 RRGFVEAVYGFSHRLCLRVDTALQSDKTFEKYRERILEPNASLLRSGDLAKVHISIVINR 86
R G VEA+ R CL + + +S + Y++ E S ++G +H S++
Sbjct: 200 REGAVEAL-----RACLELISERESRLRLQWYQKIYDEAQKSFKQNGSPESIHGSLI--- 251
Query: 87 PTTIMRLVR-TED---SKKKLVALTWVMFQSHRAGKMRTDGIFLF-----------LLRL 131
T+ L+R T D SK K + T + ++ HR ++ + LF +L
Sbjct: 252 --TVSELLRNTGDFMLSKFKDICETVLKYKDHRDKLVKKTVLALFPRLAVFCSRDFVLNY 309
Query: 132 LDPEINRF-----KKYRRPLSGIALSQIALKVGLSL 162
+ +N + RP + IAL +IA+ VG S+
Sbjct: 310 FNACMNHLLAALRNQNERPTAFIALGEIAMAVGGSI 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,980,242
Number of Sequences: 539616
Number of extensions: 3276208
Number of successful extensions: 8161
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8149
Number of HSP's gapped (non-prelim): 20
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)