Query psy3887
Match_columns 250
No_of_seqs 155 out of 1084
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:54:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q80_A Geranylgeranyl pyrophos 100.0 5.6E-35 1.9E-39 266.5 11.7 161 57-241 8-177 (301)
2 2e8v_A Geranylgeranyl pyrophos 100.0 3.7E-34 1.3E-38 264.6 15.0 170 44-234 9-193 (340)
3 3mzv_A Decaprenyl diphosphate 100.0 8E-34 2.7E-38 263.2 13.9 169 45-239 25-203 (341)
4 3kra_B Geranyl diphosphate syn 100.0 1.9E-33 6.5E-38 253.8 14.6 172 45-240 12-203 (274)
5 3rmg_A Octaprenyl-diphosphate 100.0 6.9E-34 2.3E-38 262.8 11.8 169 44-239 19-197 (334)
6 1wy0_A Geranylgeranyl pyrophos 100.0 1.2E-33 4E-38 260.7 12.8 173 45-240 18-202 (342)
7 3oyr_A Trans-isoprenyl diphosp 100.0 1.9E-33 6.5E-38 261.4 14.1 169 45-240 38-216 (345)
8 3ipi_A Geranyltranstransferase 100.0 6.4E-34 2.2E-38 259.7 10.5 153 60-239 28-190 (295)
9 2ftz_A Geranyltranstransferase 100.0 1.1E-33 3.6E-38 257.0 11.7 160 59-242 31-202 (284)
10 3aqb_B Component B of hexapren 100.0 1.7E-33 5.7E-38 258.4 13.0 156 59-239 29-194 (325)
11 3nf2_A Putative polyprenyl syn 100.0 3.6E-33 1.2E-37 259.9 13.5 160 59-240 28-208 (352)
12 4dhd_A Polyprenyl synthetase; 100.0 2.6E-33 8.9E-38 261.2 12.3 172 44-239 16-208 (358)
13 3p8l_A Geranyltranstransferase 100.0 2.2E-33 7.4E-38 257.1 11.2 175 43-240 19-210 (302)
14 1v4e_A Octoprenyl-diphosphate 100.0 1.4E-33 4.8E-38 257.2 9.7 153 64-242 30-193 (299)
15 1wmw_A Geranylgeranyl diphosph 100.0 2.3E-33 7.8E-38 257.9 10.9 157 59-236 24-194 (330)
16 3lmd_A Geranylgeranyl pyrophos 100.0 3.3E-33 1.1E-37 261.4 11.9 155 59-240 59-224 (360)
17 1rtr_A Geranyltranstransferase 100.0 5.8E-33 2E-37 253.4 11.9 173 45-240 13-202 (301)
18 3pde_A Farnesyl-diphosphate sy 100.0 5.7E-33 1.9E-37 255.4 11.8 158 59-239 33-208 (309)
19 3m0g_A Farnesyl diphosphate sy 100.0 6E-33 2.1E-37 253.5 11.0 162 59-242 27-205 (297)
20 3pko_A Geranylgeranyl pyrophos 100.0 1.3E-32 4.5E-37 254.2 13.3 168 45-239 28-207 (334)
21 3lsn_A Geranyltranstransferase 100.0 4.4E-32 1.5E-36 248.5 15.6 173 44-239 13-206 (304)
22 3npk_A Geranyltranstransferase 100.0 3E-32 1E-36 248.4 13.4 174 43-239 7-198 (291)
23 3ts7_A Geranyltranstransferase 100.0 3.2E-32 1.1E-36 251.8 13.5 173 44-239 19-212 (324)
24 3llw_A Geranyltranstransferase 100.0 1.6E-32 5.5E-37 252.2 11.0 171 45-238 18-211 (311)
25 4f62_A Geranyltranstransferase 100.0 5.9E-32 2E-36 249.3 14.8 173 44-239 15-205 (317)
26 3uca_A Geranyltranstransferase 100.0 2.4E-32 8.4E-37 252.5 11.6 174 45-240 44-235 (324)
27 2h8o_A Geranyltranstransferase 100.0 2.2E-32 7.6E-37 253.5 11.1 159 59-240 70-246 (335)
28 3p8r_A Geranyltranstransferase 100.0 3.5E-32 1.2E-36 248.7 11.9 148 59-229 35-199 (302)
29 3lom_A Geranyltranstransferase 100.0 7.8E-32 2.7E-36 247.9 13.6 174 44-239 19-213 (313)
30 1rqj_A Geranyltranstransferase 100.0 2.8E-32 9.7E-37 248.2 9.6 148 59-229 29-193 (299)
31 2j1p_A Geranylgeranyl pyrophos 100.0 3.1E-32 1.1E-36 247.5 9.8 161 59-240 37-217 (293)
32 3apz_A Geranyl diphosphate syn 100.0 9.7E-32 3.3E-36 248.5 9.6 168 45-239 21-217 (348)
33 3tc1_A Octaprenyl pyrophosphat 100.0 3.2E-31 1.1E-35 243.7 12.6 149 67-241 28-188 (315)
34 3qkc_B Geranyl diphosphate syn 100.0 5.8E-31 2E-35 237.3 13.4 170 44-240 16-204 (273)
35 2azj_A Geranylgeranyl pyrophos 100.0 3.4E-31 1.2E-35 240.9 10.2 147 59-239 35-191 (289)
36 4fp4_A Polyprenyl synthetase; 100.0 5.8E-31 2E-35 240.0 10.8 157 45-238 17-186 (285)
37 3lk5_A Geranylgeranyl pyrophos 100.0 3.3E-30 1.1E-34 242.3 13.1 158 61-240 49-241 (380)
38 1yhl_A Farnesyl pyrophosphate 100.0 8.4E-30 2.9E-34 236.6 13.5 161 57-238 31-232 (362)
39 2qis_A Farnesyl pyrophosphate 100.0 1.8E-29 6.1E-34 236.4 15.5 177 42-239 43-247 (374)
40 2q58_A Fragment, farnesyl pyro 100.0 4.9E-30 1.7E-34 239.5 8.1 154 58-232 56-228 (368)
41 1uby_A FPS, farnesyl diphospha 100.0 7.4E-29 2.5E-33 231.7 14.8 162 57-239 54-240 (367)
42 2ihi_A Pyrophosphate synthase; 100.0 1E-28 3.5E-33 233.4 15.7 157 60-237 66-265 (395)
43 3dyh_A Farnesyl pyrophosphate 100.0 2.2E-28 7.5E-33 230.5 14.9 160 56-236 52-257 (390)
44 3mav_A Farnesyl pyrophosphate 100.0 1.3E-28 4.5E-33 231.4 12.0 150 64-234 70-262 (395)
45 2her_A Fragment, farnesyl pyro 100.0 3E-29 1E-33 235.5 6.5 156 60-237 58-233 (368)
46 3kb9_A EPI-isozizaene synthase 76.4 4.8 0.00016 36.8 6.5 48 177-224 178-225 (382)
47 1ps1_A Pentalenene synthase; a 73.5 5.9 0.0002 34.8 6.1 50 177-226 135-185 (337)
48 3v1v_A 2-MIB synthase, 2-methy 57.9 7.8 0.00027 36.6 3.9 42 177-219 256-297 (433)
49 3g4d_A (+)-delta-cadinene synt 47.7 28 0.00094 34.2 6.0 53 177-229 367-419 (554)
50 1di1_A Aristolochene synthase; 43.5 43 0.0015 28.5 6.0 34 194-227 141-174 (300)
51 2ong_A 4S-limonene synthase; m 43.0 26 0.00087 34.0 4.9 58 178-235 357-415 (543)
52 2j5c_A 1,8-cineole synthase; t 37.8 26 0.00089 34.3 4.1 48 178-225 384-431 (569)
53 3n0f_A Isoprene synthase; terp 37.8 36 0.0012 33.4 5.1 47 178-224 366-412 (555)
54 1n1b_A (+)-bornyl diphosphate 36.6 26 0.0009 34.1 3.9 50 178-227 363-412 (549)
55 1yyq_A Trichodiene synthase; t 35.4 15 0.00051 34.1 1.9 43 177-221 146-188 (374)
56 3bny_A Aristolochene synthase; 34.1 53 0.0018 28.3 5.2 35 192-226 153-187 (320)
57 3m00_A Aristolochene synthase; 32.0 40 0.0014 33.1 4.3 49 177-225 363-411 (550)
58 3p5p_A Taxadiene synthase; cla 30.0 77 0.0026 32.2 6.2 44 178-221 568-611 (764)
59 3s9v_A Abietadiene synthase, c 24.5 69 0.0024 32.7 4.7 45 178-222 599-643 (785)
60 3aqb_A Component A of hexapren 24.0 44 0.0015 27.7 2.6 51 131-192 59-110 (147)
61 3sdr_A Alpha-bisabolene syntha 22.5 58 0.002 33.4 3.7 43 178-220 627-669 (817)
62 3p8r_A Geranyltranstransferase 22.2 62 0.0021 28.9 3.4 53 131-185 226-297 (302)
No 1
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=5.6e-35 Score=266.46 Aligned_cols=161 Identities=32% Similarity=0.498 Sum_probs=144.3
Q ss_pred hhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccc
Q psy3887 57 KYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPE 135 (250)
Q Consensus 57 ~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDD 135 (250)
..++.|.+|..|++. +|||+||.|++++++ |++.+++++..+|+++||+|+ || |||||
T Consensus 8 ~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~------~~~~~~~~~~~~A~avEliH~--as-------------LiHDD 66 (301)
T 2q80_A 8 TVQRILLEPYKYLLQLPGKQVRTKLSQAFNH------WLKVPEDKLQIIIEVTEMLHN--AS-------------LLIDD 66 (301)
T ss_dssp CHHHHHTHHHHHHTTSSCHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHH--HH-------------HHHHH
T ss_pred CCcHHHHHHHHHHHhCCCccHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHHcc
Confidence 346679999999999 999999999999999 998888888999999999999 99 99999
Q ss_pred cccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHH
Q psy3887 136 INRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEE 208 (250)
Q Consensus 136 I~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSee 208 (250)
|+|+|+.|||+ ||+++|| +|||+++.|++.+.++..|. +++.+++.+.+++.||.+|+.|+++..++|++
T Consensus 67 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~ 143 (301)
T 2q80_A 67 IEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPD---AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEE 143 (301)
T ss_dssp HHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred ccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Confidence 99999999999 9999999 99999999999999987777 78889999999999999999998876689999
Q ss_pred HHHHHHhhhHHHHHHHHHHHH-HcCCChhhhhhh
Q psy3887 209 EYRTMTIRTVGRSVGYPTIRT-SKGGASSQVQTY 241 (250)
Q Consensus 209 eYl~mi~~KTg~Lf~~a~~~~-l~Ggs~~~ie~y 241 (250)
+|++|+..|||+||.++|++. +.++.++....|
T Consensus 144 ~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~ 177 (301)
T 2q80_A 144 EYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPL 177 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999999999984 333333444444
No 2
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=3.7e-34 Score=264.64 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=149.1
Q ss_pred hHHHHhccC-cchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhcccccccc
Q psy3887 44 RVDTALQSD-KTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRT 121 (250)
Q Consensus 44 ~v~~~l~~~-~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~ 121 (250)
+|++.+... .|.....+.+.+|..|++. ||||+||.|++++++ |++.+.+.+..+|+++||+|+ ||
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~A~avEliH~--as---- 76 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINR------VMNLPKDQLAIVSQIVELLHN--SS---- 76 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHH--HH----
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH----
Confidence 466666553 3445567789999999999 999999999999999 988888888999999999999 99
Q ss_pred chhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHHHhcc
Q psy3887 122 DGIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQLLELHRGQ 192 (250)
Q Consensus 122 ~~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~l~~l~~GQ 192 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+.++..+. ...+++++++.+.+++.||
T Consensus 77 ---------LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 147 (340)
T 2e8v_A 77 ---------LLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQ 147 (340)
T ss_dssp ---------HHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 99999999999999987654 2446788999999999999
Q ss_pred ccchhcccCC--CCCCHHHHHHHHhhhHHHHHHHHHHHH--HcCCC
Q psy3887 193 GMEIYWRDNY--TCPSEEEYRTMTIRTVGRSVGYPTIRT--SKGGA 234 (250)
Q Consensus 193 ~~di~w~~~~--~~pSeeeYl~mi~~KTg~Lf~~a~~~~--l~Ggs 234 (250)
.+|+.|+.+. .++|+++|++|+..|||+||.++|++. +.|.+
T Consensus 148 ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~ 193 (340)
T 2e8v_A 148 GLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSS 193 (340)
T ss_dssp HHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCc
Confidence 9999999876 578999999999999999999999983 44444
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=8e-34 Score=263.19 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=141.7
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccch
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDG 123 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~ 123 (250)
|+..+.+..... ..+.+.++..|++. +|||+||.|++++++ +++.+.++...+|+++||+|+ ||
T Consensus 25 v~~~l~~~~~~~-~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~A~aiEliH~--as------ 89 (341)
T 3mzv_A 25 VNALIRERMSSE-HAPRIPEVTAHLIEAGGKRLRPMLTLAAAR------LVGYGGPFHVHLAATVEFIHT--AT------ 89 (341)
T ss_dssp HHHHHHHHSCCS-SCTHHHHHHHHHHHSCCCCHHHHHHHHHHH------HTTCCCSHHHHHHHHHHHHHH--HH------
T ss_pred HHHHHHHHhccc-CChHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH------
Confidence 555554322211 25679999999999 999999999999999 999888899999999999999 99
Q ss_pred hhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccch
Q psy3887 124 IFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEI 196 (250)
Q Consensus 124 ~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di 196 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+.++..+. +++.+++.+.+++.||.+|+
T Consensus 90 -------LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~~dl 159 (341)
T 3mzv_A 90 -------LLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMR---VMEILANASAVIAEGEVLQL 159 (341)
T ss_dssp -------HHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 99999999999999876655 88999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 197 YWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 197 ~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
.|..+ .++|+++|++|+..|||+||+++|++ ++.|.+++.++
T Consensus 160 ~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 203 (341)
T 3mzv_A 160 TAAQN-LATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQ 203 (341)
T ss_dssp HHTTC-TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99876 46899999999999999999999998 45566655443
No 4
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.9e-33 Score=253.84 Aligned_cols=172 Identities=13% Similarity=0.047 Sum_probs=141.5
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccch
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDG 123 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~ 123 (250)
|++.+.+.... ..+..|.+|..|++. +|||+||.|++++++ +++.+.+++..+|+++||+|+ ||
T Consensus 12 ie~~L~~~l~~-~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--aS------ 76 (274)
T 3kra_B 12 IERYLKKSITI-RPPETVFGPMHHLTFAAPATAASTLCLAACE------LVGGDRSQAMAAAAAIHLVHA--AA------ 76 (274)
T ss_dssp HHHHHHHHCCC-CSSHHHHHHHHHHHHHSCCCHHHHHHHHHHH------HTTCCGGGGHHHHHHHHHHHH--HH------
T ss_pred HHHHHHHHccc-CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH------
Confidence 55555432221 223459999999998 999999999999999 999999999999999999999 99
Q ss_pred hhhhhhhccccccc-cCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc----H---HHHHHHHHHHH--H
Q psy3887 124 IFLFLLRLLDPEIN-RFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL----S---GIALSQIAEQL--L 186 (250)
Q Consensus 124 ~~~~~~~LihDDI~-D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~----~---~~a~~~~~e~l--~ 186 (250)
||||||+ |+++.|||+ ||+++|| +||+|++.||+.+.++..|. . ..++..+++.+ .
T Consensus 77 -------LIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~ 149 (274)
T 3kra_B 77 -------YVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPE 149 (274)
T ss_dssp -------HHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTT
T ss_pred -------HHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHH
Confidence 9999998 666789999 9999999 99999999999999887651 1 22334445544 6
Q ss_pred HHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 187 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 187 ~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
.++.||.+|+.|..+ ++|+++|++|+.+|||+||.++|++ ++.|.++++++.
T Consensus 150 ~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~ 203 (274)
T 3kra_B 150 GMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 203 (274)
T ss_dssp THHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999876 6899999999999999999999998 456666655443
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-34 Score=262.77 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=135.0
Q ss_pred hHHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccc
Q psy3887 44 RVDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 44 ~v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
.|+..+.+... ...+.+.+|..|++. +|||+||.|++++++ +++.+.++...+|+++||+|+ ||
T Consensus 19 ~v~~~l~~~~~--~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~A~aiEliH~--as----- 83 (334)
T 3rmg_A 19 DFKALFDTPLS--DSNALLDSVITHIRKRNGKMMRPILVLLVAR------LYGAVTPATLHAAVSLELLHT--AS----- 83 (334)
T ss_dssp HHHHHTC------CCCHHHHHHHHHTCC----CHHHHHHHHHHH------HHSCCCHHHHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHHhc--cCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCChHHHHHHHHHHHHHHH--HH-----
Confidence 36665554332 236789999999999 999999999999999 999888999999999999999 99
Q ss_pred hhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccc
Q psy3887 123 GIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGME 195 (250)
Q Consensus 123 ~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~d 195 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+.+...+. +++++++.+.+++.||.+|
T Consensus 84 --------LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~ld 152 (334)
T 3rmg_A 84 --------LVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYE---IIRLVSSLGQKLAEGELLQ 152 (334)
T ss_dssp --------HHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 99999999999998876555 7899999999999999999
Q ss_pred hhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 196 IYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 196 i~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
+.|+.+ .++|+++|++|+..|||+||.++|++ ++.|.+++.++
T Consensus 153 l~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 197 (334)
T 3rmg_A 153 LSNVSN-HSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVA 197 (334)
T ss_dssp HHCCCC---CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhCCC-CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999876 46899999999999999999999988 45566655443
No 6
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-33 Score=260.73 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=147.3
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccch
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDG 123 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~ 123 (250)
|+..+.+.... ...+.+.+|..|++. +|||+||.|++++++ +++.+++++..+|+++||+|+ ||
T Consensus 18 v~~~l~~~~~~-~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~A~avEliH~--as------ 82 (342)
T 1wy0_A 18 IDEKIFELIPE-KDPRVLYEAARHYPLAGGKRVRPFVVLTSTE------AVGGDPLRAIYPAVAIELIHN--YS------ 82 (342)
T ss_dssp HHHHHHHHSCS-CSSHHHHHHHHHTGGGTCCCHHHHHHHHHTT------TTTSCGGGGHHHHHHHHHHHH--HH------
T ss_pred HHHHHHHHhcc-cCcHHHHHHHHHHHhCCCccHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHH--HH------
Confidence 55555542221 124679999999999 999999999999999 888887888999999999999 99
Q ss_pred hhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHHHhcccc
Q psy3887 124 IFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQLLELHRGQGM 194 (250)
Q Consensus 124 ~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~l~~l~~GQ~~ 194 (250)
||||||+|+|++|||+ ||+++|| +||||++.+++.+.++..+. ...+++.+++.+.+++.||.+
T Consensus 83 -------LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~ 155 (342)
T 1wy0_A 83 -------LVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQAR 155 (342)
T ss_dssp -------HHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 99999999999999874332 245789999999999999999
Q ss_pred chhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 195 EIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 195 di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
|+.|..+. ..|+++|++|+..|||+||.++|++ ++.|.+++.++.
T Consensus 156 dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~ 202 (342)
T 1wy0_A 156 DLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKA 202 (342)
T ss_dssp HHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99998764 3589999999999999999999998 455666654443
No 7
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.9e-33 Score=261.41 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=138.5
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccch
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDG 123 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~ 123 (250)
|+..+.+... ...+.+.++..|++. ||||+||.|++++++ +++.+.++...+|.++||+|+ ||
T Consensus 38 v~~~l~~~l~--~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~------~~g~~~~~~~~~A~aiEliH~--as------ 101 (345)
T 3oyr_A 38 VNRLITDRMQ--SDVAIIPALAEHLIAAGGKRLRPLMTVAAAR------LAGADNDHFQKLAAAVEFIHT--AT------ 101 (345)
T ss_dssp HHHHHHHHTC--CSSTHHHHHHHHHHTTTCCCHHHHHHHHHHH------HTTCCSSTHHHHHHHHHHHHH--HH------
T ss_pred HHHHHHHHhc--cCChhHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH------
Confidence 5555543222 225678899999999 999999999999999 888888899999999999999 99
Q ss_pred hhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccch
Q psy3887 124 IFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEI 196 (250)
Q Consensus 124 ~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di 196 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+.++..+. +++++++.+.+++.||.+|+
T Consensus 102 -------LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~~dl 171 (345)
T 3oyr_A 102 -------LLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMK---ALEILARASRVIAEGEVLQL 171 (345)
T ss_dssp -------HHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 99999999999999886655 88999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 197 YWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 197 ~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
.|..+. ++|+++|++|+.+|||+||+++|++ ++.|.+++.++.
T Consensus 172 ~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~ 216 (345)
T 3oyr_A 172 MRSHDL-NLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEA 216 (345)
T ss_dssp HTSSCS-SCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HcCCCC-CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 998763 5899999999999999999999998 456666654443
No 8
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=6.4e-34 Score=259.70 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=133.6
Q ss_pred hhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccccc
Q psy3887 60 ERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINR 138 (250)
Q Consensus 60 ~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~D 138 (250)
+.+.++..|++. ||||+||.|++++++ +++.+.+++..+|+++||+|+ || ||||||+|
T Consensus 28 ~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LIHDDi~D 86 (295)
T 3ipi_A 28 PGLKKMVEHVCHSGGKRIRPIILLLVSE------ICSGSYSRSLNAALAVEMMHS--AS-------------LIHDDLLD 86 (295)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHH------HHHSCCGGGHHHHHHHHHHHH--HH-------------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHHCcCcC
Confidence 679999999999 999999999999999 888888899999999999999 99 99999999
Q ss_pred CCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHHHH
Q psy3887 139 FKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYR 211 (250)
Q Consensus 139 ~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl 211 (250)
+|++|||+ ||+++|| +||||++.|++.+.+.. + .+++.+++.+.+++.||.+|+.|+.+. +|+++|+
T Consensus 87 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~---~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~t~~~y~ 160 (295)
T 3ipi_A 87 QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-E---KVIQDFGKAGMDMAEGEVLDLKLEDES--FGENDYF 160 (295)
T ss_dssp HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-H---HHHHHHHHHHHHHHHHHHHHHC---------CHHHH
T ss_pred CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-H---HHHHHHHHHHHHHHccchHHHHccCCC--CCHHHHH
Confidence 99999999 9999999 99999999999988763 3 378899999999999999999998763 7899999
Q ss_pred HHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 212 TMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 212 ~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
+|+.+|||+||+++|++ ++.|.++++++
T Consensus 161 ~~i~~KTg~L~~~a~~~ga~lag~~~~~~~ 190 (295)
T 3ipi_A 161 KCIYKKTASLFAISASIGAYTGGAEEELAE 190 (295)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999998 45566655444
No 9
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-33 Score=257.05 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=142.6
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
.+.+.+|..|++. +|||+||.|++++++ +++.+++++..+|+++||+|+ || ||||||
T Consensus 31 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LIHDDIP 89 (284)
T 2ftz_A 31 DLLTEEAMLYSATVGGXRIRPLLVLTLGE------DLGVEEEXLLDVAVAVELFHT--AS-------------LIHDDLP 89 (284)
T ss_dssp CCHHHHHHHHHHHSCCCCHHHHHHHHHHH------HHTCCHHHHHHHHHHHHHHHH--HH-------------HHHHHST
T ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCcCHHHHHHHHHHHHHHHH--HH-------------HHhCCch
Confidence 4579999999998 999999999999999 898888888999999999999 99 999999
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHH
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEE 208 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSee 208 (250)
+|+|++|||+ ||+++|| +||+|++.|++.+.+++.+ .+++.+++.+.+++.||.+|+.|+.+..++|++
T Consensus 90 ~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~---~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~ 166 (284)
T 2ftz_A 90 PIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNS---XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQE 166 (284)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHH
T ss_pred hcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChH---HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHH
Confidence 9999999999 9999999 9999999999999987332 488999999999999999999998775478999
Q ss_pred HHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhhhc
Q psy3887 209 EYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQTYA 242 (250)
Q Consensus 209 eYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ya 242 (250)
+|++|+..|||+||.++|++ ++.|.+++....|+
T Consensus 167 ~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g 202 (284)
T 2ftz_A 167 MVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLG 202 (284)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 99999999999999999998 34555444444443
No 10
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.7e-33 Score=258.39 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=140.8
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccccc
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEIN 137 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~ 137 (250)
.+.+.+|..|++. +||++||.+++++++ +++.+.++...+|+++||+|+ || ||||||+
T Consensus 29 ~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LiHDDi~ 87 (325)
T 3aqb_B 29 SETINKAAHHILSSGGKRVRPMFVLLSGF------LNDTQKDDLIRTAVSLELVHM--AS-------------LVHDDYI 87 (325)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHT------TSSCCCHHHHHHHHHHHHHHH--HH-------------HHHHHHH
T ss_pred chHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCChHHHHHHHHHHHHHHH--HH-------------HHhCccc
Confidence 4579999999998 999999999999999 888777888999999999999 99 9999999
Q ss_pred cCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHHH
Q psy3887 138 RFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEY 210 (250)
Q Consensus 138 D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeY 210 (250)
|+|+.|||+ ||++.|| +||||++.+++.+.++..+. +++.+++.+.+++.||.+|+.|+.+. .+|+++|
T Consensus 88 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y 163 (325)
T 3aqb_B 88 DNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSK---FHQIFSKTILEVCFGEFDQMADRFNY-PVSFTAY 163 (325)
T ss_dssp HTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHH---HHHHHHHHHHHHHHHHHHHHHTTTCC-CCCHHHH
T ss_pred cCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHH---HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHH
Confidence 999999998 9999999 99999999999999875555 88999999999999999999998764 5899999
Q ss_pred HHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 211 RTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 211 l~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
++|+..|||+||.++|++ ++.|.+++.++
T Consensus 164 ~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 194 (325)
T 3aqb_B 164 LRRINRKTAILIEASCHLGALSSQLDEQSTY 194 (325)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999998 34555555443
No 11
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=3.6e-33 Score=259.92 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=143.3
Q ss_pred hhhHHhHHHHHh-----------c-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhh
Q psy3887 59 RERILEPNASLL-----------R-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFL 126 (250)
Q Consensus 59 ~~~l~~p~~yll-----------~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~ 126 (250)
.+.+.+...|.+ . ||||+||.|++++++ +++.+.+++..+|+++||+|+ ||
T Consensus 28 ~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~------~~g~~~~~~~~~A~avEliH~--as--------- 90 (352)
T 3nf2_A 28 APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAE------VTGAAPEVGVPGAVAVELVHN--FS--------- 90 (352)
T ss_dssp CTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHH------TTTCCGGGGHHHHHHHHHHHH--HH---------
T ss_pred ChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHH--HH---------
Confidence 456888888888 6 999999999999999 899888999999999999999 99
Q ss_pred hhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcc
Q psy3887 127 FLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWR 199 (250)
Q Consensus 127 ~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~ 199 (250)
||||||+|+|++|||+ ||+++|| +||||++.+++.+.+++.|....+++++++.+.+++.||.+|+.|.
T Consensus 91 ----LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~ 166 (352)
T 3nf2_A 91 ----LLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYE 166 (352)
T ss_dssp ----HHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999 9999999 9999999999999998766333578999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 200 DNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 200 ~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
.+ .++|+++|++|+..|||+||.++|++ ++.|.+++.++.
T Consensus 167 ~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~ 208 (352)
T 3nf2_A 167 HR-DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADT 208 (352)
T ss_dssp TC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 76 47899999999999999999999988 456666655443
No 12
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.6e-33 Score=261.22 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=145.9
Q ss_pred hHHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccc
Q psy3887 44 RVDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 44 ~v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
.|++.+.+..... ..+.+.+|..|++. +|||+||.|++++++ +++.+.+++..+|+++||+|+ ||
T Consensus 16 ~v~~~l~~~~~~~-~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--as----- 81 (358)
T 4dhd_A 16 EVEKALVRYLSIG-LAEDFREAVLYQVKTGGKRLRPLLTLAAAE------AVSGQWRPALPAAAIVELIHN--YS----- 81 (358)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHGGGSSCCCCHHHHHHHHHHH------HHHSCCGGGHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHHhccc-CCHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-----
Confidence 3555554322211 14679999999999 999999999999999 888888899999999999999 99
Q ss_pred hhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccc
Q psy3887 123 GIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGME 195 (250)
Q Consensus 123 ~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~d 195 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+... +....+++.+++.+.+++.||.+|
T Consensus 82 --------LiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~GQ~ld 151 (358)
T 4dhd_A 82 --------LIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDT--PKPTLFAKEVAEVIKAIDEGERLD 151 (358)
T ss_dssp --------HHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 9999999999998643 233457899999999999999999
Q ss_pred hhcc-----------cCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 196 IYWR-----------DNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 196 i~w~-----------~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
+.|+ .+..++|+++|++|+..|||+||+++|++ ++.|.+++.++
T Consensus 152 l~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 208 (358)
T 4dhd_A 152 ILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAE 208 (358)
T ss_dssp HHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9998 44447899999999999999999999987 45566655444
No 13
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-33 Score=257.12 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=145.7
Q ss_pred hhHHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChh-HHHHHHHHHHHHhhccccccc
Q psy3887 43 LRVDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDS-KKKLVALTWVMFQSHRAGKMR 120 (250)
Q Consensus 43 ~~v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~-~~~~iA~~vE~lH~~~AS~~~ 120 (250)
..|+..+.+.......++.|.+|..|++. +|||+||.|++++++ +++.+.+ ++..+|+++||+|+ +|
T Consensus 19 ~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~~A~avEliH~--as--- 87 (302)
T 3p8l_A 19 PLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVA------AFQKEMETQDYQVAASLEMIHT--YS--- 87 (302)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHH--HH---
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCccHHHHHHHHHHHHHHH--HH---
Confidence 34555554322211235679999999998 999999999999999 8888877 89999999999999 99
Q ss_pred cchhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHH--HH
Q psy3887 121 TDGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQL--LE 187 (250)
Q Consensus 121 ~~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~l--~~ 187 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.|++.+.+...+. ...+++.+++.+ ..
T Consensus 88 ----------LIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~ 157 (302)
T 3p8l_A 88 ----------LIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQG 157 (302)
T ss_dssp ----------HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTT
T ss_pred ----------HHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhH
Confidence 999999 9999999999 9999999 99999999999999865443 134567777765 68
Q ss_pred HHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 188 LHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 188 l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
++.||.+|+.|..+ ++|+++|++|+..|||+||+++|++ ++.|.+++.++.
T Consensus 158 ~~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~ 210 (302)
T 3p8l_A 158 MVSGQMGDIEGEKV--SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGL 210 (302)
T ss_dssp HHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHccCC--CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999865 6899999999999999999999998 455666555443
No 14
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.4e-33 Score=257.24 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=137.4
Q ss_pred hHHHHHhc-CCCchHHHHHHHhcCcccccccccC-ChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccccccCCC
Q psy3887 64 EPNASLLR-SGDLAKVHISIVINRPTTIMRLVRT-EDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINRFKK 141 (250)
Q Consensus 64 ~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~-~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~D~s~ 141 (250)
+|..|++. ||||+||.|++++++ +++. +.++...+|+++||+|+ || ||||||+|+|+
T Consensus 30 ~~~~y~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~~A~avEliH~--as-------------LiHDDi~D~s~ 88 (299)
T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFK------NRGVEIGEDAISSLAALELVHL--AS-------------LLHDDVIDGAR 88 (299)
T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHH------HHTCCCCHHHHHHHHHHHHHHH--HH-------------HHHHHHHHTCS
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHH------HcCCCChhHHHHHHHHHHHHHH--HH-------------HhhCCCCCCCC
Confidence 99999999 999999999999999 8887 66788899999999999 99 99999999999
Q ss_pred CCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHH
Q psy3887 142 YRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMT 214 (250)
Q Consensus 142 ~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi 214 (250)
.|||+ ||+++|| +||||++.|++.+.++..+. +++.+++.+.+++.||.+|+.|+.+. +|+++|++|+
T Consensus 89 ~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i 163 (299)
T 1v4e_A 89 FRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNK---LRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIV 163 (299)
T ss_dssp EETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred CCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHH---HHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHH
Confidence 99998 9999999 99999999999999886555 88999999999999999999999875 8999999999
Q ss_pred hhhHHHHHHHHHHH--HHcCCChhhhhhhc
Q psy3887 215 IRTVGRSVGYPTIR--TSKGGASSQVQTYA 242 (250)
Q Consensus 215 ~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ya 242 (250)
..|||+||.++|++ ++.|.+++....|+
T Consensus 164 ~~KTa~L~~~~~~~ga~lag~~~~~l~~~g 193 (299)
T 1v4e_A 164 EGKSGALFGLALQLPALLEGELGEDLYNLG 193 (299)
T ss_dssp HHHTHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998 34454434444443
No 15
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-33 Score=257.95 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=139.8
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccccc
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEIN 137 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~ 137 (250)
++.+.+|..|++. +||++||.|++++++ +++.+.++...+|+++||+|+ || ||||||+
T Consensus 24 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~A~avEliH~--as-------------LihDDi~ 82 (330)
T 1wmw_A 24 DPLYRDLLQDYPRRGGKMLRGLLTVYSAL------AHGAPLEAGLEAATALELFQN--WV-------------LVHDDIE 82 (330)
T ss_dssp SHHHHHHHHHHHHTCCCCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH-------------HHHHHHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHH--HH-------------HHHcccc
Confidence 4579999999998 999999999999999 888888888999999999999 99 9999999
Q ss_pred cCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHHHHhccccchhc-ccCCCCCCH
Q psy3887 138 RFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSR--PLSGIALSQIAEQLLELHRGQGMEIYW-RDNYTCPSE 207 (250)
Q Consensus 138 D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~--p~~~~a~~~~~e~l~~l~~GQ~~di~w-~~~~~~pSe 207 (250)
|+|+.|||+ ||++.|| +||||++.|++.+.++.. .....+++.+++.+.+++.||.+|+.| +++..++|+
T Consensus 83 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~ 162 (330)
T 1wmw_A 83 DGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRP 162 (330)
T ss_dssp HTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCH
T ss_pred cCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Confidence 999999999 9999999 999999999999987632 111357899999999999999999999 876457899
Q ss_pred HHHHHHHhhhHHHH-HHHHHHH--HHcCCChh
Q psy3887 208 EEYRTMTIRTVGRS-VGYPTIR--TSKGGASS 236 (250)
Q Consensus 208 eeYl~mi~~KTg~L-f~~a~~~--~l~Ggs~~ 236 (250)
++|++|+..|||+| |.++|++ ++.|.+.+
T Consensus 163 ~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~ 194 (330)
T 1wmw_A 163 EDYFRMVAHKAAYYTAVAPLRLGALLAGKTPP 194 (330)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999 9999998 34555443
No 16
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=3.3e-33 Score=261.39 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=133.0
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCccccccccc-CChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVR-TEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~-~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI 136 (250)
.+.|.+|..|++. +|||+||.|++++++ +++ .+.+++..+|+++||+|+ || ||||||
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~ll~~~------~~~~~~~~~~~~~A~avEliH~--as-------------LIHDDI 117 (360)
T 3lmd_A 59 EDFLVDIVMHLTRAGGKRFRPMFALLASE------FGEKPLSENVIKAAVVVEITHL--AT-------------LYHDDV 117 (360)
T ss_dssp CHHHHHHHHHHCCCCSCCHHHHHHHHHHT------TSSSTTCHHHHHHHHHHHHHHH--HH-------------HHHHHH
T ss_pred cHHHHHHHHHHHHCCCCcHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHHHH--HH-------------HHhCCC
Confidence 5689999999999 999999999999999 888 677889999999999999 99 999999
Q ss_pred ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHH
Q psy3887 137 NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEE 209 (250)
Q Consensus 137 ~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeee 209 (250)
+|+|++|||+ ||+++|| +||||++.|++.+.+++ + .+++++++.+.+++.||.+|+.|+.+. +|+++
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~---~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~ 191 (360)
T 3lmd_A 118 MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-T---DTVAHFAETFGELVTGQMRETVGPRDT--DPIEH 191 (360)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-H---HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHH
T ss_pred cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHH
Confidence 9999999999 9999999 99999999999999874 3 488999999999999999999999875 89999
Q ss_pred HHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 210 YRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 210 Yl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
|++|+..|||+||+++|++ ++.|.+++.++.
T Consensus 192 y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~ 224 (360)
T 3lmd_A 192 YTNVIREKTGVLIASAGYLGAMHAGAAPEHIDA 224 (360)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999988 455666555443
No 17
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=5.8e-33 Score=253.41 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=145.1
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccch
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDG 123 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~ 123 (250)
|+..+.+........+.+.+|..|++. +|||+||.|++++++ +++.+++++..+|+++||+|+ +|
T Consensus 13 v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as------ 78 (301)
T 1rtr_A 13 VNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLD------SLNTEYELGMKSAIALEMIHT--YS------ 78 (301)
T ss_dssp HHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHH------HTTSCGGGGHHHHHHHHHHHH--HH------
T ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH------
Confidence 555555422210124579999999998 999999999999999 888887888899999999999 99
Q ss_pred hhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHcc-CCC--cHHHHHHHHHHHH--HHHH
Q psy3887 124 IFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLL-SRP--LSGIALSQIAEQL--LELH 189 (250)
Q Consensus 124 ~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l-~~p--~~~~a~~~~~e~l--~~l~ 189 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.|++.+.++ ..+ ....+++.+++.+ ..++
T Consensus 79 -------LiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~ 151 (301)
T 1rtr_A 79 -------LIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMV 151 (301)
T ss_dssp -------HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred -------HHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHH
Confidence 999999 9999999998 9999999 9999999999999986 222 2244677788877 8899
Q ss_pred hccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 190 RGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 190 ~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
.||.+|+.|+.+ ++|+++|++|+..|||+||.++|++ ++.|.+++.++.
T Consensus 152 ~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~ 202 (301)
T 1rtr_A 152 GGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEH 202 (301)
T ss_dssp HHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999876 7899999999999999999999998 455666655443
No 18
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.98 E-value=5.7e-33 Score=255.36 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=139.5
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHH--HHHHHHHHHHhhccccccccchhhhhhhhccccc
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKK--KLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPE 135 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~--~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDD 135 (250)
++.+.+|..|.+. ||||+||.|++++++ +++.+.++. ..+|+++||+|+ +| |||||
T Consensus 33 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~~~A~aiEliH~--aS-------------LIHDD 91 (309)
T 3pde_A 33 DAQLAAAMTYSVLAGGKRLRPLLTVATMQ------SLGVTFVPERHWRPVMALELLHT--YS-------------LIHDD 91 (309)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHH--HH-------------HHHHH
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHH------HhCCCHHHHhHhHHHHHHHHHHH--HH-------------HHHCC
Confidence 5679999999998 999999999999999 999888888 899999999999 99 99999
Q ss_pred c--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHH--HHHHhccccchhcccCC
Q psy3887 136 I--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQL--LELHRGQGMEIYWRDNY 202 (250)
Q Consensus 136 I--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~l--~~l~~GQ~~di~w~~~~ 202 (250)
| +|+|++|||+ ||+++|| +||+|++.||+.+.+...+. ...+++.+++.. ..++.||.+|+.|+++
T Consensus 92 iP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~- 170 (309)
T 3pde_A 92 LPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV- 170 (309)
T ss_dssp STTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-
T ss_pred chhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC-
Confidence 9 9999999999 9999999 99999999999999865443 234667777765 6899999999999865
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 203 TCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 203 ~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
++|+++|++|+..|||+||+++|++ ++.|.+++.++
T Consensus 171 -~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~ 208 (309)
T 3pde_A 171 -NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWP 208 (309)
T ss_dssp -CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHH
T ss_pred -CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHH
Confidence 6899999999999999999999997 45566655444
No 19
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.98 E-value=6e-33 Score=253.47 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=141.4
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
++.+.+|..|+ . ||||+||.|++++++ +++.+.+++..+|.++||+|+ +| ||||||
T Consensus 27 ~~~l~~~~~y~-~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LIHDDip 84 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQGGKRLRAFLAIESAA------IHGISMAQAMPAALAVEALHA--YS-------------LVHDDMP 84 (297)
T ss_dssp CSHHHHHHHHH-HSCSCCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH-------------HHHHTST
T ss_pred cHHHHHHHHHH-cCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHhcCcc
Confidence 56799999999 7 999999999999999 999999999999999999999 99 999999
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCC-Cc--HHHHHHHHHHHH--HHHHhccccchhcccCCC
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSR-PL--SGIALSQIAEQL--LELHRGQGMEIYWRDNYT 203 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~-p~--~~~a~~~~~e~l--~~l~~GQ~~di~w~~~~~ 203 (250)
+|+|++|||+ ||+++|| +||+|++.||+.+.+... +. ...+++.+++.+ ..++.||.+|+.|+.+..
T Consensus 85 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~ 164 (297)
T 3m0g_A 85 CMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAV 164 (297)
T ss_dssp TTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSS
T ss_pred ccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCC
Confidence 9999999999 9999999 999999999999887642 22 245678888887 889999999999995555
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhhhc
Q psy3887 204 CPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQTYA 242 (250)
Q Consensus 204 ~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ya 242 (250)
++|+++|++|+..|||+||.++|++ ++.|.+.+....|+
T Consensus 165 ~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g 205 (297)
T 3m0g_A 165 PLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYA 205 (297)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999999987 34555544444443
No 20
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.98 E-value=1.3e-32 Score=254.19 Aligned_cols=168 Identities=10% Similarity=0.063 Sum_probs=144.8
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCccccccccc-CChhHHHHHHHHHHHHhhccccccccc
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVR-TEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~-~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
|+..+.+... ...+.+.++..|++. ||||+||.|++++++ +.+ .+.+++..+|+++||+|+ ||
T Consensus 28 v~~~l~~~~~--~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~------~g~~~~~~~~~~~A~aiEliH~--as----- 92 (334)
T 3pko_A 28 LQDYLLRTVQ--LDNQPIHHKILALLKSGGKLLRPGYFYLFST------FGNAATPAQLQAGAAAIEILHV--GT----- 92 (334)
T ss_dssp HHHHHHHHCC--CSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT------TCSCCCHHHHHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHhc--cCChHHHHHHHHHHhCCCCcHHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHHHH--HH-----
Confidence 5555543222 224579999999999 999999999999998 765 577888999999999999 99
Q ss_pred hhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHHhcccc
Q psy3887 123 GIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSR-PLSGIALSQIAEQLLELHRGQGM 194 (250)
Q Consensus 123 ~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~-p~~~~a~~~~~e~l~~l~~GQ~~ 194 (250)
||||||+|+|++|||+ ||+++|| +||||++.+++.+.++.. +. +++.+++.+.+++.||.+
T Consensus 93 --------LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~Gq~~ 161 (334)
T 3pko_A 93 --------LIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRS---LIQNHIDAMHRILQGELH 161 (334)
T ss_dssp --------HHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHH
T ss_pred --------HHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 999999999999998765 44 788899999999999999
Q ss_pred chhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 195 EIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 195 di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
|+.|..+ .++|+++|++|+..|||+||.++|++ ++.|.+++.++
T Consensus 162 dl~~~~~-~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 207 (334)
T 3pko_A 162 QMDLNYR-EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVID 207 (334)
T ss_dssp HHHTTTC-TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999876 47899999999999999999999998 45566655443
No 21
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.98 E-value=4.4e-32 Score=248.47 Aligned_cols=173 Identities=12% Similarity=0.064 Sum_probs=145.0
Q ss_pred hHHHHhccCcchh-hhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhcccccccc
Q psy3887 44 RVDTALQSDKTFE-KYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRT 121 (250)
Q Consensus 44 ~v~~~l~~~~~~~-~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~ 121 (250)
.|+..+.+..... ..++.+.+|..|++. ||||+||.|++++++ +++.+.+++..+|.++||+|+ +|
T Consensus 13 ~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--as---- 80 (304)
T 3lsn_A 13 RVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACE------ALGGKPEQANGAACAVELIHA--YS---- 80 (304)
T ss_dssp HHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHH------HTTCCGGGGHHHHHHHHHHHH--HH----
T ss_pred HHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH----
Confidence 3666665433221 225689999999998 999999999999999 999998999999999999999 99
Q ss_pred chhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCC----Cc-HHHHHHHHHHHH--
Q psy3887 122 DGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSR----PL-SGIALSQIAEQL-- 185 (250)
Q Consensus 122 ~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~----p~-~~~a~~~~~e~l-- 185 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.||+.+.++.. |. ...+++.+++.+
T Consensus 81 ---------LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~ 151 (304)
T 3lsn_A 81 ---------LVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGP 151 (304)
T ss_dssp ---------HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHST
T ss_pred ---------HHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHch
Confidence 999999 9999999998 9999999 999999999999998752 21 234667777776
Q ss_pred HHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCC-Chhhhh
Q psy3887 186 LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGG-ASSQVQ 239 (250)
Q Consensus 186 ~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Gg-s~~~ie 239 (250)
..++.||.+|+.|..+ .+|+++|++|+..|||+||.++|++ ++.|. +++.++
T Consensus 152 ~~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~ 206 (304)
T 3lsn_A 152 AGMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELK 206 (304)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hhHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4599999999999876 4899999999999999999999998 45565 444443
No 22
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.97 E-value=3e-32 Score=248.40 Aligned_cols=174 Identities=12% Similarity=0.092 Sum_probs=144.2
Q ss_pred hhHHHHhccCcc-hhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCC-hhHHHHHHHHHHHHhhcccccc
Q psy3887 43 LRVDTALQSDKT-FEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTE-DSKKKLVALTWVMFQSHRAGKM 119 (250)
Q Consensus 43 ~~v~~~l~~~~~-~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~-~~~~~~iA~~vE~lH~~~AS~~ 119 (250)
..|+..+..... .....+.+.+|..|++. ||||+||.|++++++ +++.+ .+++..+|.++||+|+ +|
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~~~~~~~~~~~~A~aiEliH~--aS-- 76 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQ------SNKPELLNQALDVALALEFIHT--YS-- 76 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHH------HHCGGGHHHHHHHHHHHHHHHH--HH--
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHH------HhCCCcHHHHHHHHHHHHHHHH--HH--
Confidence 345555543221 11235579999999998 999999999999998 88776 5788999999999999 99
Q ss_pred ccchhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHH--HH
Q psy3887 120 RTDGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQ--LL 186 (250)
Q Consensus 120 ~~~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~--l~ 186 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.|++.+.+...+. ...+++.+++. +.
T Consensus 77 -----------LIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~ 145 (291)
T 3npk_A 77 -----------LIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLN 145 (291)
T ss_dssp -----------HHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTT
T ss_pred -----------HHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHH
Confidence 999999 9999999999 9999999 99999999999998764332 23567788887 88
Q ss_pred HHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 187 ELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 187 ~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
.++.||.+|+.|+++ ++|+++|.+|+..|||+||+++|++ ++.|.++++++
T Consensus 146 ~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~ 198 (291)
T 3npk_A 146 GMVIGQAIDCFFEDK--RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESN 198 (291)
T ss_dssp THHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999864 6899999999999999999999987 45566665443
No 23
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.97 E-value=3.2e-32 Score=251.76 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=145.7
Q ss_pred hHHHHhccCcch-hhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhcccccccc
Q psy3887 44 RVDTALQSDKTF-EKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRT 121 (250)
Q Consensus 44 ~v~~~l~~~~~~-~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~ 121 (250)
.|+..+.+.... ...++.|.+|..|++. ||||+||.|++++++ +++.+.+++..+|+++||+|+ +|
T Consensus 19 ~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~------~~g~~~~~~~~~A~avEliH~--aS---- 86 (324)
T 3ts7_A 19 RVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQ------TIGVAADLLDGPACAVEFIHV--YS---- 86 (324)
T ss_dssp HHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHH------HHTCCGGGTHHHHHHHHHHHH--HH----
T ss_pred HHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH----
Confidence 366666653322 1235689999999998 999999999999999 999998999999999999999 99
Q ss_pred chhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccC--CC-c--HHHHHHHHHHHH--
Q psy3887 122 DGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLS--RP-L--SGIALSQIAEQL-- 185 (250)
Q Consensus 122 ~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~--~p-~--~~~a~~~~~e~l-- 185 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.||+.+.++. .. . ...+++.+++..
T Consensus 87 ---------LIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~ 157 (324)
T 3ts7_A 87 ---------LIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGP 157 (324)
T ss_dssp ---------HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHST
T ss_pred ---------HhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhh
Confidence 999999 9999999999 9999999 99999999999999874 21 1 134667777764
Q ss_pred HHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHHH--HcC-CChhhhh
Q psy3887 186 LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIRT--SKG-GASSQVQ 239 (250)
Q Consensus 186 ~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~~--l~G-gs~~~ie 239 (250)
..++.||.+|+.|..+ ++|+++|++|+.+|||+||.++|++. +.| .++++++
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~ 212 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFD 212 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 7899999999999876 78999999999999999999999984 344 4554443
No 24
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.97 E-value=1.6e-32 Score=252.22 Aligned_cols=171 Identities=11% Similarity=0.128 Sum_probs=144.2
Q ss_pred HHHHhccCcch-hhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCCh------hHHHHHHHHHHHHhhccc
Q psy3887 45 VDTALQSDKTF-EKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTED------SKKKLVALTWVMFQSHRA 116 (250)
Q Consensus 45 v~~~l~~~~~~-~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~------~~~~~iA~~vE~lH~~~A 116 (250)
|+..+.+.... ....+.+.++..|.+. ||||+||.|++++++ +++.+. +++..+|.++||+|+ +
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~------~~g~~~~~~~~~~~~~~~A~aiEliH~--a 89 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLC------ALVGQKDYSNQQTEYFKIALSIECLHT--Y 89 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHH------HHSCHHHHHHSHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHH------HhCCCcccccchHHHHHHHHHHHHHHH--H
Confidence 67777653321 2245689999999998 999999999999999 898887 889999999999999 9
Q ss_pred cccccchhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHH-
Q psy3887 117 GKMRTDGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLL--LSRPLSGIALSQIAEQ- 184 (250)
Q Consensus 117 S~~~~~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~--l~~p~~~~a~~~~~e~- 184 (250)
| |||||| +|+|++|||+ ||+++|| +||+|++.||+.+.+ ++.+....+++.+++.
T Consensus 90 S-------------LIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~ 156 (311)
T 3llw_A 90 S-------------LIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANG 156 (311)
T ss_dssp H-------------HHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred H-------------HHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 9 999999 9999999999 9999999 999999999999987 3221223466777777
Q ss_pred -HHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhh
Q psy3887 185 -LLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQV 238 (250)
Q Consensus 185 -l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~i 238 (250)
+..++.||.+|+.|.+ .++|+++|++|+..|||+||+++|++ ++.|.+++++
T Consensus 157 g~~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~ 211 (311)
T 3llw_A 157 GIKGMILGQALDCYFEN--TPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEEL 211 (311)
T ss_dssp STTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHhHHHHHHhcC--CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5789999999999984 47899999999999999999999988 3456655544
No 25
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.97 E-value=5.9e-32 Score=249.35 Aligned_cols=173 Identities=14% Similarity=0.062 Sum_probs=136.4
Q ss_pred hHHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccc
Q psy3887 44 RVDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 44 ~v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
.|+..|.+.......++.|.+|..|++. ||||+||.|++++++ +++.+.+++..+|.++||+|+ +|
T Consensus 15 ~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~------~~g~~~~~~~~~A~avEliH~--aS----- 81 (317)
T 4f62_A 15 RVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQ------LVGDISSLTDASAAALESIHA--YS----- 81 (317)
T ss_dssp HHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHH------HHSCCCHHHHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-----
Confidence 3566555432221126789999999998 999999999999999 999988999999999999999 99
Q ss_pred hhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc---HHHHHHHHHHHH--HHH
Q psy3887 123 GIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL---SGIALSQIAEQL--LEL 188 (250)
Q Consensus 123 ~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~---~~~a~~~~~e~l--~~l 188 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.||+.+.++.... ...+++.+++.+ ..+
T Consensus 82 --------LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m 153 (317)
T 4f62_A 82 --------LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGM 153 (317)
T ss_dssp --------HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTH
T ss_pred --------HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhH
Confidence 999999 9999999999 9999999 99999999999998874322 134566676665 479
Q ss_pred HhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHHH--HcC-CChhhhh
Q psy3887 189 HRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIRT--SKG-GASSQVQ 239 (250)
Q Consensus 189 ~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~~--l~G-gs~~~ie 239 (250)
+.||.+|+.|+.+ .+|+++|++|+..|||+||+++|++. +.| .++++++
T Consensus 154 ~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~ 205 (317)
T 4f62_A 154 ITGQMIDLSSENK--NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLA 205 (317)
T ss_dssp HHHHHHHHHTSSS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHhHHHHHhccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999865 48999999999999999999999983 445 4554443
No 26
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.97 E-value=2.4e-32 Score=252.54 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=145.3
Q ss_pred HHHHhccCcchh-hhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccc
Q psy3887 45 VDTALQSDKTFE-KYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 45 v~~~l~~~~~~~-~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
|++.+.+..... ...+.|.++..|++. +|||+||.|++++++ +++.+.+++..+|+++||+|+ ||
T Consensus 44 ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--aS----- 110 (324)
T 3uca_A 44 VDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYY------IYKSDYKKILTPAMAIEMIHT--YS----- 110 (324)
T ss_dssp HHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHH------TTCSCGGGGHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-----
Confidence 566555422211 235679999999998 999999999999999 999998999999999999999 99
Q ss_pred hhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCC-c-H-HHHHHHHHHHH--HHH
Q psy3887 123 GIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRP-L-S-GIALSQIAEQL--LEL 188 (250)
Q Consensus 123 ~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p-~-~-~~a~~~~~e~l--~~l 188 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.|++.+.+...+ . . ..+++.+++.. ..+
T Consensus 111 --------LIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m 182 (324)
T 3uca_A 111 --------LIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGM 182 (324)
T ss_dssp --------HHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTH
T ss_pred --------HHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHH
Confidence 999999 9999999999 9999999 9999999999998875321 1 1 34667777764 689
Q ss_pred HhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 189 HRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 189 ~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
+.||.+|+.|+.+ .++|+++|++|+.+|||+||.++|++ ++.|.++++++.
T Consensus 183 ~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~ 235 (324)
T 3uca_A 183 IGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKK 235 (324)
T ss_dssp HHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999876 37899999999999999999999998 456666655443
No 27
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.97 E-value=2.2e-32 Score=253.53 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=140.3
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
++.+.++..|++. ||||+||.|++++++ +++.+++.+..+|+++||+|+ +| ||||||
T Consensus 70 ~~~l~~~~~y~~~~gGKrlRP~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--as-------------LIHDDiP 128 (335)
T 2h8o_A 70 PQNLLEAMRHGVLNGGKRLRPFLVIESVA------LLGGDAEAGLHVGAALECLHC--YS-------------LVHDDLP 128 (335)
T ss_dssp CHHHHHHHHHHHHTSCSCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH-------------HHHHTST
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHHCCch
Confidence 4679999999998 999999999999999 888888888999999999999 99 999999
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHcc--CCC--cHHHHHHHHHHHH--HHHHhccccchhcccCC
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLL--SRP--LSGIALSQIAEQL--LELHRGQGMEIYWRDNY 202 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l--~~p--~~~~a~~~~~e~l--~~l~~GQ~~di~w~~~~ 202 (250)
+|++++|||+ ||+++|| +||+|++.|++.+.+. +.+ ....+++.+++.+ .+++.||.+|+.|+.+
T Consensus 129 amD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~- 207 (335)
T 2h8o_A 129 AMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK- 207 (335)
T ss_dssp TTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS-
T ss_pred hccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-
Confidence 9999999998 9999999 9999999999999987 222 1245677788877 8899999999999876
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 203 TCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 203 ~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
++|+++|++|+..|||.||.+++++ ++.|.++++++.
T Consensus 208 -~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~ 246 (335)
T 2h8o_A 208 -APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQR 246 (335)
T ss_dssp -CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred -CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6899999999999999999999998 456666655443
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.97 E-value=3.5e-32 Score=248.71 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=125.4
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
++.|.+|..|++. +|||+||.|++++++ +++.+.+++..+|.++||+|+ +| ||||||
T Consensus 35 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--as-------------LIHDDIp 93 (302)
T 3p8r_A 35 TLPLIEAMRYGLLLGGKRARPYLVYITGQ------MLGCELSDLDTPASAVECIHA--YS-------------LIHDDLP 93 (302)
T ss_dssp TSSHHHHHHHHHHSCCSCHHHHHHHHHHH------TTTCCGGGTHHHHHHHHHHHH--HH-------------HHHHTCH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHHCCcc
Confidence 5679999999998 999999999999999 999999999999999999999 99 999999
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCc-----HHHHHHHHHHHH--HHHHhccccchhcccC
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPL-----SGIALSQIAEQL--LELHRGQGMEIYWRDN 201 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~-----~~~a~~~~~e~l--~~l~~GQ~~di~w~~~ 201 (250)
+|+|++|||+ ||+++|| +||+|++.+|+.+.++..+. ...+++.+++.. ..++.||.+|+.|++
T Consensus 94 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~- 172 (302)
T 3p8r_A 94 AMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAEN- 172 (302)
T ss_dssp HHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-
T ss_pred cccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC-
Confidence 9999999999 9999999 99999999999999874221 234566777765 689999999999985
Q ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q psy3887 202 YTCPSEEEYRTMTIRTVGRSVGYPTIRT 229 (250)
Q Consensus 202 ~~~pSeeeYl~mi~~KTg~Lf~~a~~~~ 229 (250)
.++|+++|++|+.+|||+||.++|++.
T Consensus 173 -~~~s~~~y~~i~~~KTa~L~~~~~~~g 199 (302)
T 3p8r_A 173 -RLISLEELETIHRNKTGALMRCAIRLG 199 (302)
T ss_dssp -SCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHhccCcHHHHHHHHHHH
Confidence 378999999999999999999999984
No 29
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.97 E-value=7.8e-32 Score=247.87 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=143.8
Q ss_pred hHHHHhccCcchh-hhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhcccccccc
Q psy3887 44 RVDTALQSDKTFE-KYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRT 121 (250)
Q Consensus 44 ~v~~~l~~~~~~~-~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~ 121 (250)
.|+..+....... ..++.|.+|..|++. ||||+||.|++++++ +++.+.+++..+|+++||+|+ +|
T Consensus 19 ~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--aS---- 86 (313)
T 3lom_A 19 RHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGD------LIDVDQGVLDIIAAALELTHC--YS---- 86 (313)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH----
T ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH----
Confidence 3566555322111 125679999999998 999999999999999 999999999999999999999 99
Q ss_pred chhhhhhhhcccccc--ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccC-C--C-c-HHHHHHHHHHHH--
Q psy3887 122 DGIFLFLLRLLDPEI--NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLS-R--P-L-SGIALSQIAEQL-- 185 (250)
Q Consensus 122 ~~~~~~~~~LihDDI--~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~-~--p-~-~~~a~~~~~e~l-- 185 (250)
|||||| +|+|++|||+ ||+++|| +||+|++.||+.+.+.. . + . ...+++.+++.+
T Consensus 87 ---------LIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~ 157 (313)
T 3lom_A 87 ---------LIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGI 157 (313)
T ss_dssp ---------HHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHST
T ss_pred ---------HHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhH
Confidence 999999 9999999999 9999999 99999999999998762 2 2 1 234566777765
Q ss_pred HHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH-HHcC--CChhhhh
Q psy3887 186 LELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR-TSKG--GASSQVQ 239 (250)
Q Consensus 186 ~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~-~l~G--gs~~~ie 239 (250)
..++.||.+|+.|+.+ .++|+++|++|+..|||+||+++|++ ++.| .++++++
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~ 213 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKS 213 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999876 37899999999999999999999998 3334 3454443
No 30
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.97 E-value=2.8e-32 Score=248.19 Aligned_cols=148 Identities=9% Similarity=0.019 Sum_probs=132.6
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
.+.+.++..|++. +|||+||.|++++++ +++.+.+++..+|+++||+|+ +| ||||||
T Consensus 29 ~~~l~~~~~y~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LiHDDiP 87 (299)
T 1rqj_A 29 NTPVVETMQYGALLGGKRLRPFLVYATGH------MFGVSTNTLDAPAAAVECIHA--YS-------------LIHDDLP 87 (299)
T ss_dssp TSHHHHHHHHHHHSSCCCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH-------------HHHHTST
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--hH-------------HHhCCCh
Confidence 4579999999998 999999999999999 888888888999999999999 99 999999
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccC---CCc--HHHHHHHHHHHH--HHHHhccccchhcccC
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLS---RPL--SGIALSQIAEQL--LELHRGQGMEIYWRDN 201 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~---~p~--~~~a~~~~~e~l--~~l~~GQ~~di~w~~~ 201 (250)
+|+|++|||+ ||+++|| +||+|++.|++.+.++. .+. ...+++.+++.. .+++.||.+|+.|+.+
T Consensus 88 ~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~ 167 (299)
T 1rqj_A 88 AMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK 167 (299)
T ss_dssp TTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT
T ss_pred hhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC
Confidence 9999999999 9999999 99999999999999852 121 234566777765 7899999999999876
Q ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q psy3887 202 YTCPSEEEYRTMTIRTVGRSVGYPTIRT 229 (250)
Q Consensus 202 ~~~pSeeeYl~mi~~KTg~Lf~~a~~~~ 229 (250)
++|+++|++|+..|||+||.++|++.
T Consensus 168 --~~~~~~y~~i~~~KTa~L~~~~~~~g 193 (299)
T 1rqj_A 168 --HVPLDALERIHRHKTGALIRAAVRLG 193 (299)
T ss_dssp --CCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78999999999999999999999983
No 31
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.97 E-value=3.1e-32 Score=247.54 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=132.9
Q ss_pred hhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccc-
Q psy3887 59 RERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEI- 136 (250)
Q Consensus 59 ~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI- 136 (250)
++.+.+|..|++. ||||+||.|++++++ +++.+++++..+|+++||+|+ || ||||||
T Consensus 37 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LiHDDip 95 (293)
T 2j1p_A 37 PLKIHEAMRYSLLAGGKRVRPVLCIAACE------LVGGEESLAMPAACAVEMIHT--MS-------------LIHDDLP 95 (293)
T ss_dssp SHHHHHHHHHHHTSCCCCHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHH--HH-------------HHHHTST
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHHCCch
Confidence 3569999999998 999999999999999 888887888999999999999 99 999998
Q ss_pred -ccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCC---c--HHHHHHHHHHHH--HHHHhccccchhcccC
Q psy3887 137 -NRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRP---L--SGIALSQIAEQL--LELHRGQGMEIYWRDN 201 (250)
Q Consensus 137 -~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p---~--~~~a~~~~~e~l--~~l~~GQ~~di~w~~~ 201 (250)
+|+|++|||+ ||+++|| +||++++.|++.+.++..+ . ...++..+++.+ .+++.||.+|+.|+.+
T Consensus 96 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~ 175 (293)
T 2j1p_A 96 CMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGL 175 (293)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---C
T ss_pred hccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccC
Confidence 9999999999 9999999 9999999999999886421 1 123334455443 5799999999999864
Q ss_pred C-CCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 202 Y-TCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 202 ~-~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
. .++|+++|+.|+..|||+||.++|++ ++.|.++++++.
T Consensus 176 ~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~ 217 (293)
T 2j1p_A 176 DLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIER 217 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 35789999999999999999999998 456666655443
No 32
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.97 E-value=9.7e-32 Score=248.46 Aligned_cols=168 Identities=14% Similarity=0.097 Sum_probs=120.5
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-C--CCchHHHHHHHhcCcccccccccCCh-----------------hHHHHH
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-S--GDLAKVHISIVINRPTTIMRLVRTED-----------------SKKKLV 104 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~--GKr~Rp~l~~l~~~~~~~~~~~~~~~-----------------~~~~~i 104 (250)
|+..+.+... ...+.+.++..|++. + |||+||.|++++++ +++.+. ++...+
T Consensus 21 v~~~l~~~~~--~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (348)
T 3apz_A 21 LSNKLREMVL--AEVPKLASAAEYFFKRGVQGKQFRSTILLLMAT------ALDVRVPEALIGESTDIVTSELRVRQRGI 92 (348)
T ss_dssp HHHGGGGCCC--CCCC------------CCHHHHHHHHHHHHHHT------TSCC--------------CHHHHHHHHHH
T ss_pred HHHHHHHHhc--cCChhHHHHHHHHHhCCCCCccHHHHHHHHHHH------HcCCCCccccccccccccccchhHHHHHH
Confidence 5555554322 124568899999998 7 99999999999998 766421 346789
Q ss_pred HHHHHHHhhccccccccchhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHH
Q psy3887 105 ALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIA 177 (250)
Q Consensus 105 A~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a 177 (250)
|+++||+|+ || ||||||+|+|++|||+ ||+++|| +||||++.|++.+.++..+. +
T Consensus 93 A~avEliH~--as-------------LiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~---~ 154 (348)
T 3apz_A 93 AEITEMIHV--AS-------------LLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTE---V 154 (348)
T ss_dssp HHHHHHHHH--HH-------------HHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHH---H
T ss_pred HHHHHHHHH--HH-------------HHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHH---H
Confidence 999999999 99 9999999999999998 9999999 99999999999999876555 7
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
++.+++.+.+++.||.+|+.|..+ .++|+++|++|+..|||+||.++|++ ++.|.+++.++
T Consensus 155 ~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~ 217 (348)
T 3apz_A 155 VALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAV 217 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHH
Confidence 889999999999999999999764 35799999999999999999999987 34555555443
No 33
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.97 E-value=3.2e-31 Score=243.66 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=118.5
Q ss_pred HHHhc-CCCchHHHHHHHhcCcccccccccCCh--hHHHHHHHHHHHHhhccccccccchhhhhhhhccccccccCCCCC
Q psy3887 67 ASLLR-SGDLAKVHISIVINRPTTIMRLVRTED--SKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINRFKKYR 143 (250)
Q Consensus 67 ~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~--~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~D~s~~R 143 (250)
.|.+. ||||+||.|++++++ ..+... +++..+|+++||+|+ || ||||||+|+|++|
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~~~A~aiEliH~--as-------------LiHDDi~D~s~~R 86 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLN------EKTDAILLDKALNLCTIVEMIQT--AS-------------LLHDDVIDKATMR 86 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCC------TTCCHHHHHHHHHHHHHHHHHHH--HH-------------HHHHHTC------
T ss_pred HHHhcCCcccHHHHHHHHHhc------cCccccchhhHHHHHHHHHHHHH--HH-------------HHHcCCCCCCCCc
Confidence 46566 999999999999988 443322 566799999999999 99 9999999999999
Q ss_pred CCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhh
Q psy3887 144 RPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIR 216 (250)
Q Consensus 144 RG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~ 216 (250)
||+ ||+++|| +||||++.|++.+.+++ +. +++++++.+.+++.||.+|+.|..+ .++|+++|++|+..
T Consensus 87 RG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~---~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~ 161 (315)
T 3tc1_A 87 RKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-EL---IAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILED 161 (315)
T ss_dssp ----------CCSHHHHHHHHHHHHHHHHHTTSC-HH---HHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHH
T ss_pred CCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HH---HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhc
Confidence 999 9999999 99999999999999875 44 7899999999999999999999876 47899999999999
Q ss_pred hHHHHHHHHHHH--HHcCCChhhhhhh
Q psy3887 217 TVGRSVGYPTIR--TSKGGASSQVQTY 241 (250)
Q Consensus 217 KTg~Lf~~a~~~--~l~Ggs~~~ie~y 241 (250)
|||+||.++|++ ++.|.+.+....|
T Consensus 162 KTa~L~~~~~~~ga~lag~~~~~l~~~ 188 (315)
T 3tc1_A 162 KTAHFIEASLKSMAILLNKDAKIYADF 188 (315)
T ss_dssp HTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988 3455543344444
No 34
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.97 E-value=5.8e-31 Score=237.30 Aligned_cols=170 Identities=11% Similarity=0.036 Sum_probs=135.9
Q ss_pred hHHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccc
Q psy3887 44 RVDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTD 122 (250)
Q Consensus 44 ~v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~ 122 (250)
.|+..+.+.... ..+..+.+|..|++. +|||+||.|++++++ +++.+.+++..+|+++||+|+ ||
T Consensus 16 ~i~~~L~~~~~~-~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~------~~g~~~~~~~~~A~aiEliH~--aS----- 81 (273)
T 3qkc_B 16 DIESYLKKAIPI-RAPESVFEPMHHLTFAAPRTSASALCVAACE------LVGGDRSDAMAAAAAVHLMHV--AA----- 81 (273)
T ss_dssp HHHHHHHHHSCC-CCSSTTHHHHHHHHHHSCCCHHHHHHHHHHH------HTTCCGGGTHHHHHHHHHHHH--HH-----
T ss_pred HHHHHHHHhccc-CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-----
Confidence 356655543221 223468999999998 999999999999999 999999999999999999999 99
Q ss_pred hhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCC---cHHHHH---HHHHHHH--HH
Q psy3887 123 GIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRP---LSGIAL---SQIAEQL--LE 187 (250)
Q Consensus 123 ~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p---~~~~a~---~~~~e~l--~~ 187 (250)
||||||+|.+. |||+ ||+++|| +||+|++.||+.+.+...| .....+ ..+++.+ ..
T Consensus 82 --------LIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~ 152 (273)
T 3qkc_B 82 --------YTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEG 152 (273)
T ss_dssp --------HHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTT
T ss_pred --------HHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhH
Confidence 99999999999 9998 9999999 9999999999999987653 122233 3444454 67
Q ss_pred HHhccccchhcccCCCCCCHHHHHHHH-hhhHHHHHHHHHHH--HHcCCChhhhhh
Q psy3887 188 LHRGQGMEIYWRDNYTCPSEEEYRTMT-IRTVGRSVGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 188 l~~GQ~~di~w~~~~~~pSeeeYl~mi-~~KTg~Lf~~a~~~--~l~Ggs~~~ie~ 240 (250)
++.||.+|+.|..+ ++ ++|++|| .+|||.||.++|++ ++.|.++++++.
T Consensus 153 ~~~GQ~lDl~~~~~---~~-~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~ 204 (273)
T 3qkc_B 153 IVEGQYHELGLNQL---ND-LELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEK 204 (273)
T ss_dssp HHHHHHHHTTCCSS---CC-HHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhcCCC---CC-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999533 34 5777655 99999999999998 456666665543
No 35
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.97 E-value=3.4e-31 Score=240.94 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=131.5
Q ss_pred hhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccCChhHHHHHHHHHHHHhhccccccccchhhhhhhhcccccccc
Q psy3887 59 RERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTEDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEINR 138 (250)
Q Consensus 59 ~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~D 138 (250)
.+.+.+|..|++.+|||+||.|++++++ +++.++++...+|+++||+|+ || ||||||+|
T Consensus 35 ~~~l~~~~~y~~~gGKrlRp~L~l~~~~------~~g~~~~~~~~~A~avEliH~--as-------------LIHDDi~D 93 (289)
T 2azj_A 35 DWDLVDISSYILKDGKRFRGTLNMFFTV------ALGGDIKDSYGGALAIEILHS--AS-------------LALCDIVD 93 (289)
T ss_dssp CTTHHHHHHHHHSCCCCHHHHHHHHHHH------HTTCCGGGGHHHHHHHHHHHH--HH-------------HHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHH--HH-------------HHhCCCCC
Confidence 3468999999988999999999999999 888887888999999999999 99 99999999
Q ss_pred CCCCCCCC------CCchHHH-HHHHHHHHHHHHH-HccCCCcHHHHHHHHHHHHHHHHhccccchhcccCCCCCCHHHH
Q psy3887 139 FKKYRRPL------SGIALSQ-IALKVGLSLYESS-LLLSRPLSGIALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEY 210 (250)
Q Consensus 139 ~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~-~~l~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeY 210 (250)
+|++|||+ ||+++|| +||+|++.|++.+ .+++ + .+++.+++.+.+++.||.+|+.| +++|
T Consensus 94 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~---~~~~~~~~~~~~~~~GQ~~dl~~--------~~~y 161 (289)
T 2azj_A 94 LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-D---DALNTSIELWKDTSVGALRDMYD--------NSDY 161 (289)
T ss_dssp TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-H---HHHHHHHHHHHHHHHHHHHTTTT--------TSCH
T ss_pred CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-H---HHHHHHHHHHHHHHHHHHHHHhh--------HHHH
Confidence 99999998 9999999 9999999999999 8774 3 37899999999999999999976 6889
Q ss_pred HHHHhhhHHHHHHHHHHH--HHcCCChhhhh
Q psy3887 211 RTMTIRTVGRSVGYPTIR--TSKGGASSQVQ 239 (250)
Q Consensus 211 l~mi~~KTg~Lf~~a~~~--~l~Ggs~~~ie 239 (250)
++|+..|||+||.++|++ ++. ++++.++
T Consensus 162 ~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~ 191 (289)
T 2azj_A 162 IRTIELKTGSLFKLSTVLSAYAS-KHYNTKQ 191 (289)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHT-TCGGGHH
T ss_pred HHHHHcchHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999999999999999998 344 4444443
No 36
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.97 E-value=5.8e-31 Score=240.04 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=135.5
Q ss_pred HHHHhccCcchhhhhhhHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccC---ChhHHHHHHHHHHHHhhccccccc
Q psy3887 45 VDTALQSDKTFEKYRERILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRT---EDSKKKLVALTWVMFQSHRAGKMR 120 (250)
Q Consensus 45 v~~~l~~~~~~~~~~~~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~---~~~~~~~iA~~vE~lH~~~AS~~~ 120 (250)
|+..+.+..... ..+.+.+|..|++. +|||+||.|++++++ +++. +.+++..+|+++||+|+ ||
T Consensus 17 ve~~L~~~l~~~-~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~------~~g~~~~~~~~~~~~A~aiEliH~--aS--- 84 (285)
T 4fp4_A 17 VKARLNKVGEEL-EPISLRKAVRHYIETPGKLLRPLLLLTFTY------SIDRRSIMDPRILEAAAIVELLHV--VS--- 84 (285)
T ss_dssp HHHHHHTTTTTC-SSHHHHHHHHHHHHSCCCCHHHHHHHHHHH------HHCGGGGGCHHHHHHHHHHHHHHH--HH---
T ss_pred HHHHHHHHhhhc-CcHHHHHHHHHHHhCCCCcHHHHHHHHHHH------HhCCCCCChHHHHHHHHHHHHHHH--HH---
Confidence 566665433221 35689999999998 999999999999999 8887 77889999999999999 99
Q ss_pred cchhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhccc
Q psy3887 121 TDGIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQG 193 (250)
Q Consensus 121 ~~~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ~ 193 (250)
||||||+|+|++|||+ ||+++|| +||||++.|++.+.+++ + .+++.+++.+.+++.||.
T Consensus 85 ----------LIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~---~~~~~ls~~~~~~~~GQ~ 150 (285)
T 4fp4_A 85 ----------LLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG-A---DVVTYLADVAQRLSVGQA 150 (285)
T ss_dssp ----------HHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC-H---HHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh-H---HHHHHHHHHHHHHHHhHH
Confidence 9999999999999999 9999999 99999999999999874 2 488999999999999999
Q ss_pred cchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHH--HHcCCChhhh
Q psy3887 194 MEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIR--TSKGGASSQV 238 (250)
Q Consensus 194 ~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~--~l~Ggs~~~i 238 (250)
+|+.|+.+. |+..|||+||+++|++ ++.|.+ +.+
T Consensus 151 lDl~~~~~~----------~i~~KTg~Lf~~a~~lGa~lag~~-~~~ 186 (285)
T 4fp4_A 151 LDLEGERDK----------AAEFKTAPLIEAALVMPLVILGRR-ELI 186 (285)
T ss_dssp HHHTTCHHH----------HHHHHTHHHHHHHHHHHHHHHTCG-GGH
T ss_pred HHHhccccc----------hhhcCcHHHHHHHHHHHHHHcCCh-HHH
Confidence 999997541 9999999999999998 345554 443
No 37
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.96 E-value=3.3e-30 Score=242.28 Aligned_cols=158 Identities=13% Similarity=0.023 Sum_probs=127.9
Q ss_pred hHHhHHHHHhc-CCCchHHHHHHHhcCcccccccccCC------hhHHHHHHHHHHHHhhccccccccchhhhhhhhccc
Q psy3887 61 RILEPNASLLR-SGDLAKVHISIVINRPTTIMRLVRTE------DSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLD 133 (250)
Q Consensus 61 ~l~~p~~yll~-~GKr~Rp~l~~l~~~~~~~~~~~~~~------~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~Lih 133 (250)
.+.++..|.+. ||||+||.|+++.++ +++.+ .+++..+|+++||+|+ +| |||
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~------~~g~~~~~~~~~~~~~~~AaaiEliH~--as-------------LIH 107 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFL------AAQGHKNSSEKLESVLDAAASLEFIQA--CA-------------LIH 107 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHH------HHHTTSCCSSCHHHHHHHHHHHHHHHH--HH-------------HHH
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHH------HcCCCccccCCHHHHHHHHHHHHHHHH--HH-------------HHH
Confidence 47788888777 999999999999988 66653 6788999999999999 99 999
Q ss_pred cccccCCCCCCCC------C----------------CchHHH-HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHH
Q psy3887 134 PEINRFKKYRRPL------S----------------GIALSQ-IALKVGLSLYESSLLLSRPL--SGIALSQIAEQLLEL 188 (250)
Q Consensus 134 DDI~D~s~~RRG~------~----------------G~~~AI-~gd~l~~~a~~~~~~l~~p~--~~~a~~~~~e~l~~l 188 (250)
|||+|+|++|||+ | |+++|| +|||+++.+++.+.+...+. ...+..++++...++
T Consensus 108 DDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (380)
T 3lk5_A 108 DDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEV 187 (380)
T ss_dssp HHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 5 999999 99999999999999875442 234567777778899
Q ss_pred HhccccchhcccCCCCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcCCChhhhhh
Q psy3887 189 HRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKGGASSQVQT 240 (250)
Q Consensus 189 ~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~Ggs~~~ie~ 240 (250)
+.||.+|+.|..+. ++|+++|++|+..|||.| |.++|++ ++.|.+++.++.
T Consensus 188 ~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~ 241 (380)
T 3lk5_A 188 IGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDA 241 (380)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998764 679999999999999999 8999987 456666655443
No 38
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.96 E-value=8.4e-30 Score=236.61 Aligned_cols=161 Identities=9% Similarity=-0.045 Sum_probs=133.7
Q ss_pred hhhhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccCC----hhH---HHH----HHHHHHHHhhccccccccchhh
Q psy3887 57 KYRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTE----DSK---KKL----VALTWVMFQSHRAGKMRTDGIF 125 (250)
Q Consensus 57 ~~~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~~----~~~---~~~----iA~~vE~lH~~~AS~~~~~~~~ 125 (250)
...+.+.++..|.+.||||+||.|++++++ +++.+ ++. +.. +|.++||+|+ ||
T Consensus 31 ~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~--as-------- 94 (362)
T 1yhl_A 31 NRARYLRIMMDTTCLGGKYFRGMTVVNVAE------GFLAVTQHDEATKERILHDACVGGWMIEFLQA--HY-------- 94 (362)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHH------HHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHH--HH--------
T ss_pred hHHHHHHHHHHhhcCCcccHHHHHHHHHHH------HhCCCcCCChhhhHHHHHHHHHHHHHHHHHHH--HH--------
Confidence 445678899999988999999999999888 66543 222 344 6789999999 99
Q ss_pred hhhhhccccccccCCCCCCCC------CCc--hHHH-HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHHHHhcccc
Q psy3887 126 LFLLRLLDPEINRFKKYRRPL------SGI--ALSQ-IALKVGLSLYESSLLLSR--PLSGIALSQIAEQLLELHRGQGM 194 (250)
Q Consensus 126 ~~~~~LihDDI~D~s~~RRG~------~G~--~~AI-~gd~l~~~a~~~~~~l~~--p~~~~a~~~~~e~l~~l~~GQ~~ 194 (250)
||||||+|+|++|||+ ||+ ++|| +||++++.+++.+.++.. +....+++.+++.+.+++.||.+
T Consensus 95 -----LiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~l 169 (362)
T 1yhl_A 95 -----LVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMY 169 (362)
T ss_dssp -----HHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 999 5899 999999999999988633 23356889999999999999999
Q ss_pred chhcc-----------c--CC--CCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcC-CChhhh
Q psy3887 195 EIYWR-----------D--NY--TCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKG-GASSQV 238 (250)
Q Consensus 195 di~w~-----------~--~~--~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~G-gs~~~i 238 (250)
|+.|+ . +. .++|+++|++|+..|||+| |.++|++ ++.| .+++.+
T Consensus 170 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~ 232 (362)
T 1yhl_A 170 DVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEM 232 (362)
T ss_dssp HHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99998 3 21 2689999999999999999 9999988 3455 344433
No 39
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.96 E-value=1.8e-29 Score=236.39 Aligned_cols=177 Identities=13% Similarity=0.057 Sum_probs=143.4
Q ss_pred hhhHHHHhccCcc---hhhhhhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccCC----hh---HHHHHHHHHHHH
Q psy3887 42 CLRVDTALQSDKT---FEKYRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTE----DS---KKKLVALTWVMF 111 (250)
Q Consensus 42 ~~~v~~~l~~~~~---~~~~~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~~----~~---~~~~iA~~vE~l 111 (250)
...|+..+..... .+...+.+.++..|.+.||||+||.+++++++ +++.+ ++ .+..+|.++||+
T Consensus 43 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~~~~a~~~A~avEli 116 (374)
T 2qis_A 43 SQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFR------ELVEPRKQDADSLQRAWTVGWCVELL 116 (374)
T ss_dssp HHHHHHHHTTC--CGGGHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHH------HHSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCcchHHHHHHHHHH------HhCCCCccchHHHHHHHHHHHHHHHH
Confidence 3446666654322 23456778899999888999999999999988 66653 22 456789999999
Q ss_pred hhccccccccchhhhhhhhccccccccCCCCCCCC------CCch-HHH-HHHHHHHHHHHHHHccC--CCcHHHHHHHH
Q psy3887 112 QSHRAGKMRTDGIFLFLLRLLDPEINRFKKYRRPL------SGIA-LSQ-IALKVGLSLYESSLLLS--RPLSGIALSQI 181 (250)
Q Consensus 112 H~~~AS~~~~~~~~~~~~~LihDDI~D~s~~RRG~------~G~~-~AI-~gd~l~~~a~~~~~~l~--~p~~~~a~~~~ 181 (250)
|+ +| ||||||+|+|++|||+ ||++ +|| +||+++..+|+.+.++. .+....+++.+
T Consensus 117 H~--as-------------LIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~ 181 (374)
T 2qis_A 117 QA--FF-------------LVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELF 181 (374)
T ss_dssp HH--HH-------------HHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHH
T ss_pred HH--HH-------------HHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 99 99 9999999999999998 9999 999 99999999999988752 22335678999
Q ss_pred HHHHHHHHhccccchhcccCCC----CCCHHHHHHHHhhhHHHH-HHHHHHH--HHcC-CChhhhh
Q psy3887 182 AEQLLELHRGQGMEIYWRDNYT----CPSEEEYRTMTIRTVGRS-VGYPTIR--TSKG-GASSQVQ 239 (250)
Q Consensus 182 ~e~l~~l~~GQ~~di~w~~~~~----~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~G-gs~~~ie 239 (250)
++.+.+++.||.+|+.|..+.. ++|+++|++|+..|||.| |.++|.+ ++.| .+++.++
T Consensus 182 ~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~ 247 (374)
T 2qis_A 182 LQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHA 247 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999999999986522 589999999999999999 9999987 4556 5555443
No 40
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.96 E-value=4.9e-30 Score=239.51 Aligned_cols=154 Identities=17% Similarity=0.095 Sum_probs=129.8
Q ss_pred hhhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccC----ChhHHHHHHHHHHHHhhccccccccchhhhhhhhccc
Q psy3887 58 YRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRT----EDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLD 133 (250)
Q Consensus 58 ~~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~----~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~Lih 133 (250)
..+.+.++..|-+.||||+||.+++++++ +++. ..+++..+|++|||+|+ || |||
T Consensus 56 ~~~~~~~~l~Y~~~GGKrlRp~l~~~~~~------~~~~~~~~~~e~~~~la~aiEliH~--as-------------LiH 114 (368)
T 2q58_A 56 VIEYYLNCIDYNVKKGKHIRGKILVLISS------LSSAYSNIKRDSIYLLGWVVEAIQA--LI-------------LIA 114 (368)
T ss_dssp HHHHHHHHHHHHTTCSTTTTTC-CHHHHT------TTTCCCSSSHHHHHHHHHHHHHHHH--HH-------------HHH
T ss_pred HHHHHHHHHhcCCCCccchhHHHHHHHHH------HhCCCccCCHHHHHHHHHHHHHHHH--HH-------------HHH
Confidence 34557788999888999999999999888 6653 35678889999999999 99 999
Q ss_pred cccccCCCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCC----cHHHHHHHHHHHHHHHHhccccchhcccCC
Q psy3887 134 PEINRFKKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRP----LSGIALSQIAEQLLELHRGQGMEIYWRDNY 202 (250)
Q Consensus 134 DDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p----~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~ 202 (250)
|||+|+|++|||+ ||++.|| +||+|++.|++.+.++..+ ....+++++++.+.+++.||.+|+.|.+..
T Consensus 115 DDimD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~ 194 (368)
T 2q58_A 115 DDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLS 194 (368)
T ss_dssp HHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCS
T ss_pred hhcccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Confidence 9999999999999 9999999 9999999999998876432 124577889999999999999999998654
Q ss_pred -CCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcC
Q psy3887 203 -TCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKG 232 (250)
Q Consensus 203 -~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~G 232 (250)
..+++++|++|+..|||.| |.+|+.+ ++.|
T Consensus 195 ~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag 228 (368)
T 2q58_A 195 KADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE 228 (368)
T ss_dssp SCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC
T ss_pred cCCchHHHHHHHHHHHhccccchHHHHHHHHHhC
Confidence 4568999999999999998 6777665 3444
No 41
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.96 E-value=7.4e-29 Score=231.69 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=136.3
Q ss_pred hhhhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccCC----hh---HHHHHHHHHHHHhhccccccccchhhhhhh
Q psy3887 57 KYRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTE----DS---KKKLVALTWVMFQSHRAGKMRTDGIFLFLL 129 (250)
Q Consensus 57 ~~~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~~----~~---~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~ 129 (250)
...+.+.++..|.+.||||+||.+++++++ +++.+ ++ .+..+|.++||+|+ ||
T Consensus 54 ~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~------~~~~~~~~~~~~~~~~~~~A~aiEliH~--as------------ 113 (367)
T 1uby_A 54 DAVARLKEVLQYNAPGGKCNRGLTVVAAYR------ELSGPGQKDAESLRCALAVGWCIELFQA--AS------------ 113 (367)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHHHHHHH------HHCCGGGCSHHHHHHHHHHHHHHHHHHH--HH------------
T ss_pred hhHHHHHHHHhhhcCCCcchhHHHHHHHHH------HhCCCccCChhhHHHHHHHHHHHHHHHH--HH------------
Confidence 345678999999888999999999999998 66542 22 46889999999999 99
Q ss_pred hccccccccCCCCCCCC------CCch-HHH-HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHHHHhccccchhcc
Q psy3887 130 RLLDPEINRFKKYRRPL------SGIA-LSQ-IALKVGLSLYESSLLLSR--PLSGIALSQIAEQLLELHRGQGMEIYWR 199 (250)
Q Consensus 130 ~LihDDI~D~s~~RRG~------~G~~-~AI-~gd~l~~~a~~~~~~l~~--p~~~~a~~~~~e~l~~l~~GQ~~di~w~ 199 (250)
||||||+|+|++|||+ ||++ ++| .|+++++.+|+.+.+... +....+++.+++.+.+++.||.+|+.|.
T Consensus 114 -LiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~ 192 (367)
T 1uby_A 114 -LVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITA 192 (367)
T ss_dssp -HHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 9999 888 888988999999887522 2335678999999999999999999998
Q ss_pred cCC----CCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcC-CChhhhh
Q psy3887 200 DNY----TCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKG-GASSQVQ 239 (250)
Q Consensus 200 ~~~----~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~G-gs~~~ie 239 (250)
.+. .++|+++|++|+..|||.| |.++|.+ ++.| ++++.++
T Consensus 193 ~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~ 240 (367)
T 1uby_A 193 PVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHE 240 (367)
T ss_dssp CTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHH
T ss_pred cccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHH
Confidence 643 3689999999999999999 9999987 4556 5555443
No 42
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.96 E-value=1e-28 Score=233.37 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=131.4
Q ss_pred hhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccCC------hhHHHHHHHHHHHHhhccccccccchhhhhhhhccc
Q psy3887 60 ERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRTE------DSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLD 133 (250)
Q Consensus 60 ~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~~------~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~Lih 133 (250)
+.+.+...|...||||+||.|++++++ +++.+ .+++..+|.++||+|+ +| |||
T Consensus 66 ~~~~~~~~Y~~~GGKrlRp~Lvl~~~~------~~g~~~~~~~~~~~a~~lA~aiEliH~--as-------------LIH 124 (395)
T 2ihi_A 66 KYYKLLFDYNCLGGKNNRGILVILIYE------YVKNRDINSSEWEKAACLAWCIEILQA--AF-------------LVA 124 (395)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHH------HHC---CCHHHHHHHHHHHHHHHHHHH--HH-------------HHH
T ss_pred HHHHHHHHhhccCcccHHHHHHHHHHH------HhCCCCCChhHHHHHHHHHHHHHHHHH--HH-------------HHH
Confidence 567788899888999999999999999 77653 2467789999999999 99 999
Q ss_pred cccccCCCCCCCC------CCchH--HH-HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHHHHHhccccch-hccc-
Q psy3887 134 PEINRFKKYRRPL------SGIAL--SQ-IALKVGLSLYESSLLL-S-RPLSGIALSQIAEQLLELHRGQGMEI-YWRD- 200 (250)
Q Consensus 134 DDI~D~s~~RRG~------~G~~~--AI-~gd~l~~~a~~~~~~l-~-~p~~~~a~~~~~e~l~~l~~GQ~~di-~w~~- 200 (250)
|||+|+|++|||+ ||.+. || +||+|++.+++.+.+. . .|....+++++++.+.+++.||.+|+ +|++
T Consensus 125 DDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~ 204 (395)
T 2ihi_A 125 DDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDK 204 (395)
T ss_dssp HHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred hccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Confidence 9999999999999 89998 89 9999999999998874 2 33345688999999999999999999 7731
Q ss_pred -----------CC----------CCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcCCChhh
Q psy3887 201 -----------NY----------TCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKGGASSQ 237 (250)
Q Consensus 201 -----------~~----------~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~Ggs~~~ 237 (250)
|. .++|+++|++|+..|||.| |.+++.+ ++.|.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~ 265 (395)
T 2ihi_A 205 YSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp HHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTC
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhh
Confidence 11 1679999999999999999 9998887 455655544
No 43
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.95 E-value=2.2e-28 Score=230.46 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=131.8
Q ss_pred hhhhhhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccC-------------ChhHHHHHHH----HHHHHhhccccc
Q psy3887 56 EKYRERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRT-------------EDSKKKLVAL----TWVMFQSHRAGK 118 (250)
Q Consensus 56 ~~~~~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~-------------~~~~~~~iA~----~vE~lH~~~AS~ 118 (250)
....+.+.++..|.+.||||+||.|+++.++ +++. +.+.+..+|+ ++||+|+ +|
T Consensus 52 ~~~~~~l~~~m~Y~~~GGKr~Rp~l~l~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~--as- 122 (390)
T 3dyh_A 52 PNRVRYLRKMMDTTCLGGKYNRGLTVIDVAE------SLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQA--HY- 122 (390)
T ss_dssp HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH------HTSCC---------CCHHHHHHHHHHHHHHHHHHHHHH--HH-
T ss_pred hhHHHHHHHHHHhhcCCccchhHHHHHHHHH------HhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHH--HH-
Confidence 3456789999999999999999999999988 6553 2455666776 6999999 99
Q ss_pred cccchhhhhhhhccccccccCCCCCCCC------CCchHHH-HHHHHHHHH--HHHHHcc--CCCcHHHHHHHHHHHHHH
Q psy3887 119 MRTDGIFLFLLRLLDPEINRFKKYRRPL------SGIALSQ-IALKVGLSL--YESSLLL--SRPLSGIALSQIAEQLLE 187 (250)
Q Consensus 119 ~~~~~~~~~~~~LihDDI~D~s~~RRG~------~G~~~AI-~gd~l~~~a--~~~~~~l--~~p~~~~a~~~~~e~l~~ 187 (250)
||||||+|+|++|||+ ||+++|| +||+++..+ ++.+.+. +.|....+++++++.+.+
T Consensus 123 ------------LIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~ 190 (390)
T 3dyh_A 123 ------------LVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYT 190 (390)
T ss_dssp ------------HHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH
T ss_pred ------------HHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 999998754 6777653 234445578999999999
Q ss_pred HHhccccchhccc---------------CCCCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcCCChh
Q psy3887 188 LHRGQGMEIYWRD---------------NYTCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKGGASS 236 (250)
Q Consensus 188 l~~GQ~~di~w~~---------------~~~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~Ggs~~ 236 (250)
++.||.+|+.|+. +..++|+++|++|+..|||.| |.+++++ ++.|.+++
T Consensus 191 ~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~ 257 (390)
T 3dyh_A 191 TAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPT 257 (390)
T ss_dssp HHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChH
Confidence 9999999999931 124689999999999999999 9999987 44555554
No 44
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.95 E-value=1.3e-28 Score=231.37 Aligned_cols=150 Identities=16% Similarity=0.099 Sum_probs=121.2
Q ss_pred hHHHHHhcCCCchHHHHHHHhcCcccccccccC------ChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccccc
Q psy3887 64 EPNASLLRSGDLAKVHISIVINRPTTIMRLVRT------EDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPEIN 137 (250)
Q Consensus 64 ~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~------~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDDI~ 137 (250)
....|.+.||||+||.|++++++ +++. +.+++..+|+++||+|+ || ||||||+
T Consensus 70 ~~~~Y~~~GGKRlRP~l~l~~~~------~~~~~~~~~~~~~~~~~~A~aiEliH~--as-------------LiHDDIm 128 (395)
T 3mav_A 70 LLFDYNCLGGKNNRGILVILIYE------YVKNRDINSSEWEKAACLAWCIEILQA--AF-------------LVADDIM 128 (395)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHH------HHHC-CCCHHHHHHHHHHHHHHHHHHH--HH-------------HHHHHHH
T ss_pred HHHhcCCCCchhhhHHHHHHHHH------HhCCCCCCcccHHHHHHHHHHHHHHHH--HH-------------HHHhHHh
Confidence 34456667999999999999888 6543 23577889999999999 99 9999999
Q ss_pred cCCCCCCCC------CCchHHH-HHHHHHH--HHHHHHHcc--CCCcHHHHHHHHHHHHHHHHhccccchhcccC-----
Q psy3887 138 RFKKYRRPL------SGIALSQ-IALKVGL--SLYESSLLL--SRPLSGIALSQIAEQLLELHRGQGMEIYWRDN----- 201 (250)
Q Consensus 138 D~s~~RRG~------~G~~~AI-~gd~l~~--~a~~~~~~l--~~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~----- 201 (250)
|+|++|||+ ||++.|| +||+++. .++..+... +.+....+++.+++...+++.||.+|+.|..+
T Consensus 129 D~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~ 208 (395)
T 3mav_A 129 DKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDA 208 (395)
T ss_dssp TTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC
T ss_pred cCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 999999999 9999999 9999764 456655543 23334567899999999999999999998642
Q ss_pred ------------------CCCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcCCC
Q psy3887 202 ------------------YTCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKGGA 234 (250)
Q Consensus 202 ------------------~~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~Ggs 234 (250)
..++|+++|++|+..|||+| |.+++.+ ++.|.+
T Consensus 209 ~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~ 262 (395)
T 3mav_A 209 HREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIA 262 (395)
T ss_dssp -CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCC
T ss_pred HHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 13468999999999999999 8888876 445543
No 45
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.95 E-value=3e-29 Score=235.46 Aligned_cols=156 Identities=18% Similarity=0.089 Sum_probs=128.2
Q ss_pred hhHHhHHHHHhcCCCchHHHHHHHhcCcccccccccC----ChhHHHHHHHHHHHHhhccccccccchhhhhhhhccccc
Q psy3887 60 ERILEPNASLLRSGDLAKVHISIVINRPTTIMRLVRT----EDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLRLLDPE 135 (250)
Q Consensus 60 ~~l~~p~~yll~~GKr~Rp~l~~l~~~~~~~~~~~~~----~~~~~~~iA~~vE~lH~~~AS~~~~~~~~~~~~~LihDD 135 (250)
+.+.+...|...||||+||.+++++++ +++. +.+++..+|.++||+|+ || |||||
T Consensus 58 ~~~~~~~~y~~~GGKrlRp~l~l~~~~------~~g~~~~~~~~~~~~~A~avEllH~--as-------------LIHDD 116 (368)
T 2her_A 58 EYYLNCIDYNVKKGKHIRGKILVLISS------LSSAYSNIKRDSIYLLGWVVEAIQA--LI-------------LIADD 116 (368)
T ss_dssp HHHHHHHHHHTTSSTTTTTC-CHHHHT------TTTCCCSSSHHHHHHHHHHHHHHHH--HH-------------HHHHH
T ss_pred HHHHHHHHHhhCCCCccchHHHHHHHH------HhCCCCcccHHHHHHHHHHHHHHHH--HH-------------HHHcc
Confidence 556677777777999999999999988 6654 34678899999999999 99 99999
Q ss_pred cccCCCCCCCC------CCchHHH-HHHHHH---HHHHHHHHcc-C-CCcHHHHHHHHHHHHHHHHhccccchhcccCC-
Q psy3887 136 INRFKKYRRPL------SGIALSQ-IALKVG---LSLYESSLLL-S-RPLSGIALSQIAEQLLELHRGQGMEIYWRDNY- 202 (250)
Q Consensus 136 I~D~s~~RRG~------~G~~~AI-~gd~l~---~~a~~~~~~l-~-~p~~~~a~~~~~e~l~~l~~GQ~~di~w~~~~- 202 (250)
|+|+|++|||+ ||+++|| +||+|+ ..+++.+.+. . .| ...+++++++.+.+++.||.+|+.|..+.
T Consensus 117 ImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~ 195 (368)
T 2her_A 117 IMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDI-VMKIQKIYNESIFFTVLGQHLDLSYFDLSK 195 (368)
T ss_dssp HHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCCCSS
T ss_pred cccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcCh-HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999 9999999 999999 7778776653 2 12 24578999999999999999999998643
Q ss_pred CCCCHHHHHHHHhhhHHHH-HHHHHHH--HHcCCChhh
Q psy3887 203 TCPSEEEYRTMTIRTVGRS-VGYPTIR--TSKGGASSQ 237 (250)
Q Consensus 203 ~~pSeeeYl~mi~~KTg~L-f~~a~~~--~l~Ggs~~~ 237 (250)
.++..++|++|+..|||.| |.++|.+ ++.|.+++.
T Consensus 196 ~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~ 233 (368)
T 2her_A 196 ADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSS 233 (368)
T ss_dssp CSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCC
T ss_pred CCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhH
Confidence 2332299999999999999 9999987 455655544
No 46
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=76.37 E-value=4.8 Score=36.81 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGY 224 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~ 224 (250)
....+.+.+.+++.+-..|..|+.+...||.+||+++-....|.-+-+
T Consensus 178 ~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~ 225 (382)
T 3kb9_A 178 WNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWT 225 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHH
Confidence 456788889999999999999987667899999999966666654433
No 47
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=73.50 E-value=5.9 Score=34.78 Aligned_cols=50 Identities=18% Similarity=-0.004 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCC-CHHHHHHHHhhhHHHHHHHHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCP-SEEEYRTMTIRTVGRSVGYPT 226 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~p-SeeeYl~mi~~KTg~Lf~~a~ 226 (250)
....+.+.+.+++.+...|..|+.+...| |.+||+++-....|.-+-++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~ 185 (337)
T 1ps1_A 135 WCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDL 185 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHH
Confidence 45677788888899999999998877789 999999986666555544433
No 48
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=57.88 E-value=7.8 Score=36.65 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVG 219 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg 219 (250)
....+.+.+.+++++-..|..|+.+...||.+||+++ ++.||
T Consensus 256 q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg 297 (433)
T 3v1v_A 256 QSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNN 297 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHh
Confidence 4667788899999999999999877678999999998 44554
No 49
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=47.66 E-value=28 Score=34.21 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIRT 229 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~~~ 229 (250)
.+..+.+.+.+++++-..|..|..+...||.|||++.-.-.+|.-+-+.....
T Consensus 367 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~ 419 (554)
T 3g4d_A 367 RVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFV 419 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHH
Confidence 46667788889999999999998776789999999998777776554444433
No 50
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=43.49 E-value=43 Score=28.51 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=24.3
Q ss_pred cchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHH
Q psy3887 194 MEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTI 227 (250)
Q Consensus 194 ~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~ 227 (250)
++..|+.....||.+||+++-....|.-+-+...
T Consensus 141 ~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~ 174 (300)
T 1di1_A 141 RAQTDRARLSIHELGHYLEYREKDVGKALLSALM 174 (300)
T ss_dssp HTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhccccCCCCCHHHHHHHHhhhccHHHHHHHH
Confidence 4567887667899999999877776655444433
No 51
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=43.01 E-value=26 Score=34.04 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHH-HHHcCCCh
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTI-RTSKGGAS 235 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~-~~l~Ggs~ 235 (250)
...+.+.+.+++++-..|..|......||.|||+++-....|.-.-+... ..++...+
T Consensus 357 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t 415 (543)
T 2ong_A 357 IPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFT 415 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCC
Confidence 45566777888888888999998777899999999877666654443333 34544333
No 52
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=37.84 E-value=26 Score=34.29 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYP 225 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a 225 (250)
...+.+.+.+++++-..|..|......||.|||+++-....|.-.-+.
T Consensus 384 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~ 431 (569)
T 2j5c_A 384 TPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS 431 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH
Confidence 455667788888888889999887778999999998776666444333
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=37.80 E-value=36 Score=33.38 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGY 224 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~ 224 (250)
+..+.+.+.+++++-..|..|..+...||.|||++.-.-.+|.-+-+
T Consensus 366 ~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~ 412 (555)
T 3n0f_A 366 LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQL 412 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHH
Confidence 45566778888888888999987667899999999977777654433
No 54
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=36.57 E-value=26 Score=34.08 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTI 227 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~~ 227 (250)
...+.+.+.+++++-..|..|......||.|||++.-....|.-.-+...
T Consensus 363 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~ 412 (549)
T 1n1b_A 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPT 412 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHH
Confidence 45566777888888888899987777899999999876666654444333
No 55
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=35.38 E-value=15 Score=34.09 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRS 221 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~L 221 (250)
....+...+.+-..|..+|.. + ....|+.++|..+.+++||..
T Consensus 146 ~~~rf~~s~~~~~~a~~~Ea~-n-~~~~p~~~~Y~~~rR~~sG~~ 188 (374)
T 1yyq_A 146 CSLNLIRSTLDFFEGCWIEQY-N-FGGFPGSHDYPQFLRRMNGLG 188 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-C-CCCCTTCTTHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-c-cCCCCCHHHHHHHHHhhccHH
Confidence 556677777777778877753 2 224578999999999999963
No 56
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=34.06 E-value=53 Score=28.33 Aligned_cols=35 Identities=14% Similarity=-0.088 Sum_probs=24.4
Q ss_pred cccchhcccCCCCCCHHHHHHHHhhhHHHHHHHHH
Q psy3887 192 QGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPT 226 (250)
Q Consensus 192 Q~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a~ 226 (250)
...+..|+.+...||.+||+++-....|.-+-++.
T Consensus 153 ~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~ 187 (320)
T 3bny_A 153 FMRAQTDRTRARPMGLGGYLEYRERDVGKELLAAL 187 (320)
T ss_dssp HHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHH
Confidence 44455677655679999999997777775554443
No 57
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=32.01 E-value=40 Score=33.06 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHHHHH
Q psy3887 177 ALSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYP 225 (250)
Q Consensus 177 a~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf~~a 225 (250)
.+..+.+.+.+++++-..|-.|..+...||.|||++.-.-.+|.-+-++
T Consensus 363 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~ 411 (550)
T 3m00_A 363 IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLAT 411 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHH
Confidence 4566778888999999999999876667999999999777777554333
No 58
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=30.03 E-value=77 Score=32.22 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRS 221 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~L 221 (250)
+..+.+...+++++-..|-.|..+...||.|||++.-...+|.-
T Consensus 568 ~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~ 611 (764)
T 3p5p_A 568 LAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLG 611 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHH
Confidence 45566778888888888899987777899999999977666653
No 59
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=24.54 E-value=69 Score=32.71 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSV 222 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~Lf 222 (250)
+..+.+...+++++-..|-.|..+...||.|||++.-.-.+|.-.
T Consensus 599 ~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~ 643 (785)
T 3s9v_A 599 LGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGT 643 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHH
Confidence 455666778888888888899877778999999999766666533
No 60
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=24.00 E-value=44 Score=27.70 Aligned_cols=51 Identities=8% Similarity=-0.084 Sum_probs=33.7
Q ss_pred ccccccccCCCCCCCCCCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHhcc
Q psy3887 131 LLDPEINRFKKYRRPLSGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQLLELHRGQ 192 (250)
Q Consensus 131 LihDDI~D~s~~RRG~~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l~~l~~GQ 192 (250)
-+.|||.++-+.| .| +|||+=+.-|..+++.+.- ..++.+++++.++-+-.
T Consensus 59 rv~d~i~~n~K~r--------iVLaGD~~Sa~fY~lLa~~~~~---~~i~~lS~aI~eVNE~K 110 (147)
T 3aqb_A 59 RMQDFINEDNKDS--------FVLSTDVLSALFYKYLSQPFYQ---HDFLVLTDCVSRINELK 110 (147)
T ss_dssp HHGGGCCTTTHHH--------HHHHHHHHHHHHHHHTBTTBCH---HHHHHHHHHHHHHHHHH
T ss_pred HhhcccccCCccc--------eEeehHHHHHHHHHHHcChhhH---HHHHHHHHHHHHHHHHH
Confidence 4568885555333 55 9999988888887754332 35677888777765543
No 61
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=22.46 E-value=58 Score=33.41 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccccchhcccCCCCCCHHHHHHHHhhhHHH
Q psy3887 178 LSQIAEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGR 220 (250)
Q Consensus 178 ~~~~~e~l~~l~~GQ~~di~w~~~~~~pSeeeYl~mi~~KTg~ 220 (250)
+..+.+.+.+++++-..|-.|..+...||.|||++.-...+|.
T Consensus 627 ~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~ 669 (817)
T 3sdr_A 627 VSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQ 669 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccc
Confidence 4556677788888888889998777789999999987766665
No 62
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=22.20 E-value=62 Score=28.95 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=31.9
Q ss_pred ccccccccC------------CCCCCCC------CCchHHH-HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3887 131 LLDPEINRF------------KKYRRPL------SGIALSQ-IALKVGLSLYESSLLLSRPLSGIALSQIAEQL 185 (250)
Q Consensus 131 LihDDI~D~------------s~~RRG~------~G~~~AI-~gd~l~~~a~~~~~~l~~p~~~~a~~~~~e~l 185 (250)
=|.|||.|- ++.+.|+ +|...|. .+.-+..+|.+.+..++.. ...+..+++.+
T Consensus 226 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~l~~~~ 297 (302)
T 3p8r_A 226 QVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN--TEHLEEFARYV 297 (302)
T ss_dssp HHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--THHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHH
Confidence 678999873 4556666 6777777 7777788888887777542 23455555544
Done!