RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3887
         (250 letters)



>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
           {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 294

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 6/26 (23%), Positives = 7/26 (26%)

Query: 36  GFSHRLCLRVDTALQSDKTFEKYRER 61
                   RVD    S+     Y E 
Sbjct: 239 NQVKWTATRVDLVFGSNSILRAYSEL 264


>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 409

 Score = 26.1 bits (56), Expect = 5.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 111 FQSHRAGKMRTDGIFLFLLRLLDPEI 136
           F+S+       D    F L+ +D EI
Sbjct: 1   FESYNPEFFLYDIFLKFCLKYIDGEI 26


>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of
           transcription activator BmrR {Bacillus subtilis [TaxId:
           1423]}
          Length = 157

 Score = 25.0 bits (54), Expect = 6.6
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 181 IAEQLLELHRGQGMEIYWRDNYTCPSEEEYRT 212
           IA++ L +      E+    +Y+   +EEYR 
Sbjct: 120 IADRQLTV-VSDVYELIIPIHYSPKKQEEYRV 150


>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 101

 Score = 24.5 bits (53), Expect = 6.7
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 14/102 (13%)

Query: 97  EDSKKKLVALTWVMFQSHRAGKMRTDGIFLFLLR----LLDPEINRFKKYRRPLSGIALS 152
           ED  ++L A+   + ++      R + + L         L+       ++      +   
Sbjct: 1   EDPLERLRAVVVTLAENVS----RPELLLLIDAPSHPDFLNAWRTVNHQWIPDTDDLEND 56

Query: 153 QIALKVGL------SLYESSLLLSRPLSGIALSQIAEQLLEL 188
                V L       L+    +    LS      + E +LEL
Sbjct: 57  AHKRAVYLVQLAADGLFVHDYIHDDVLSKSKRQAMLETILEL 98


>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium
           roqueforti) [TaxId: 5082]}
          Length = 300

 Score = 25.1 bits (54), Expect = 8.5
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 182 AEQLLELHRGQGMEIYWRDNYTCPSEEEYRTMTIRTVGRSVGYPTIRTSKGGASSQVQTY 241
           A ++LE           R   +      Y     + VG+++    +R S G   S  +  
Sbjct: 129 ANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ 188

Query: 242 AVP 244
            + 
Sbjct: 189 DMK 191


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 899,327
Number of extensions: 39511
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 6
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)