BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3889
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 17 LVLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEV 76
+V +KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEV
Sbjct: 1 MVHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEV 60
Query: 77 GVKDYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTXXXXXXXXXXXXXXXXA---- 129
G+ DYG++ N +L+++ L + + + F D N
Sbjct: 61 GISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVY 120
Query: 130 ---VGCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLV 185
GCL +D LA +FIR++ E R+ LLK +D +K + +K AE Y+K M K++
Sbjct: 121 LGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVK-ETQKKWAEQYLKIMGKIL 179
Query: 186 EISGEGSESEFLTREKARLKGLLNQ-KVSAQKKDELKSRMNILDSF 230
+ GE +F E R+ L+ + K+S KK+EL+ +NIL +F
Sbjct: 180 D-QGE----DFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220
>pdb|1OVN|A Chain A, Crystal Structure And Functional Analysis Of Drosophila
Wind-- A Pdi-Related Protein
pdb|1OVN|B Chain B, Crystal Structure And Functional Analysis Of Drosophila
Wind-- A Pdi-Related Protein
Length = 248
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIAYPYG KHEAF ++S+ K D L+A V
Sbjct: 13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYGEKHEAFTAFSKSAHKATKDLLIATV 72
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADSLNKTXXXXXXXXXXXXXXXXAV-- 130
GVKDYGE +N+ L R + P + AD + A
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 132
Query: 131 ------GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 133 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 192
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 193 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 247
Query: 243 L 243
L
Sbjct: 248 L 248
>pdb|2C0E|A Chain A, Structure Of Pdi-Related Chaperone, Wind With His-Tag On
C- Terminus.
pdb|2C0E|B Chain B, Structure Of Pdi-Related Chaperone, Wind With His-Tag On
C- Terminus
Length = 248
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIAYPYG KHEAF ++S+ K D L+A V
Sbjct: 4 VTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYGEKHEAFTAFSKSAHKATKDLLIATV 63
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADSLNKTXXXXXXXXXXXXXXXXAV-- 130
GVKDYGE +N+ L R + P + AD + A
Sbjct: 64 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 123
Query: 131 ------GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 124 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 183
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 184 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 238
Query: 243 L 243
L
Sbjct: 239 L 239
>pdb|2C0F|A Chain A, Structure Of Wind Y53f Mutant
pdb|2C0F|B Chain B, Structure Of Wind Y53f Mutant
Length = 248
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIA+PYG KHEAF ++S+ K D L+A V
Sbjct: 13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIAFPYGEKHEAFTAFSKSAHKATKDLLIATV 72
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADSLNKTXXXXXXXXXXXXXXXXAV-- 130
GVKDYGE +N+ L R + P + AD + A
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 132
Query: 131 ------GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 133 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 192
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 193 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 247
Query: 243 L 243
L
Sbjct: 248 L 248
>pdb|2C1Y|A Chain A, Structure Of Pdi-Related Chaperone, Wind Mutant-Y55k
pdb|2C1Y|B Chain B, Structure Of Pdi-Related Chaperone, Wind Mutant-Y55k
Length = 248
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIAYP G KHEAF ++S+ K D L+A V
Sbjct: 13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPKGEKHEAFTAFSKSAHKATKDLLIATV 72
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADSLNKTXXXXXXXXXXXXXXXXAV-- 130
GVKDYGE +N+ L R + P + AD + A
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 132
Query: 131 ------GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 133 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 192
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 193 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 247
Query: 243 L 243
L
Sbjct: 248 L 248
>pdb|2C0G|A Chain A, Structure Of Pdi-Related Chaperone, Wind Mutant-Y53s
pdb|2C0G|B Chain B, Structure Of Pdi-Related Chaperone, Wind Mutant-Y53s
Length = 248
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIA PYG KHEAF ++S+ K D L+A V
Sbjct: 13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATV 72
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADSLNKTXXXXXXXXXXXXXXXXAV-- 130
GVKDYGE +N+ L R + P + AD + A
Sbjct: 73 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 132
Query: 131 ------GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 133 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 192
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 193 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 247
Query: 243 L 243
L
Sbjct: 248 L 248
>pdb|1G7E|A Chain A, Nmr Structure Of N-Domain Of Erp29 Protein
Length = 122
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEVG+
Sbjct: 3 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 62
Query: 80 DYGERDNEDLAKR 92
DYG++ N +L+++
Sbjct: 63 DYGDKLNMELSEK 75
>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain
Length = 106
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 131 GCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISG 189
GCL +D LA FI ++S+E R+ +LK +D +K +K A Y+K M K+++ G
Sbjct: 2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETD-KKWASQYLKIMGKILD-QG 59
Query: 190 EGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
E +F E AR+ L+ K+S KK+EL+ +NIL +F
Sbjct: 60 E----DFPASELARISKLIENKMSEGKKEELQRSLNILTAF 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,138,491
Number of Sequences: 62578
Number of extensions: 206890
Number of successful extensions: 552
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 24
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)