BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3889
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P81623|ERP29_BOVIN Endoplasmic reticulum resident protein 29 OS=Bos taurus GN=ERP29
PE=1 SV=2
Length = 258
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 21/236 (8%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEVG+
Sbjct: 32 TKGALPLDTITFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 91
Query: 80 DYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTLFILIIFFSSI-------GIWIGA 129
DYG++ N +L+++ L + + + F D N L+ + +I GI++G
Sbjct: 92 DYGDKLNMELSEKYKLDKENYPIFYLFQDGDFENPVLYSGAVKVGAIQRWLKGHGIYLGM 151
Query: 130 VGCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEIS 188
GCL +D LA +FIR++ E R++LLK +D +K + +K AE Y+K M K+++
Sbjct: 152 PGCLPAYDTLAGEFIRASGVEARQSLLKQGQDNLASVK-ETDKKWAEQYLKIMGKILD-Q 209
Query: 189 GEGSESEFLTREKARLKGLLNQ-KVSAQKKDELKSRMNILDSFALYVKSSGGRDEL 243
GE +F E R+ L+ + K+S KK+EL+ +NIL +F K G ++EL
Sbjct: 210 GE----DFPASEMTRITKLIEKNKMSDGKKEELQKSLNILTAFQ---KKGGEKEEL 258
>sp|P57759|ERP29_MOUSE Endoplasmic reticulum resident protein 29 OS=Mus musculus GN=Erp29
PE=1 SV=2
Length = 262
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 17/222 (7%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S + LVAEVG+
Sbjct: 37 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSEELLVAEVGIS 96
Query: 80 DYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTLFILIIFFSSI-------GIWIGA 129
DYG++ N +L+++ L + + + F D N L+ + +I G+++G
Sbjct: 97 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDLENPVLYNGAVKVGAIQRWLKGQGVYLGM 156
Query: 130 VGCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEIS 188
GCL +D LA +FI+++S E R+ +LK +D +K + +K A Y+K M K+++
Sbjct: 157 PGCLPAYDALAGEFIKASSIEARQAILKQGQDGLLSVK-ETEKKWASQYLKIMGKILD-Q 214
Query: 189 GEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
GE +F E AR+ L+ K+S KK+EL+ +NIL +F
Sbjct: 215 GE----DFPASEMARIGKLIENKMSDSKKEELQKSLNILTAF 252
>sp|P52555|ERP29_RAT Endoplasmic reticulum resident protein 29 OS=Rattus norvegicus
GN=Erp29 PE=1 SV=2
Length = 260
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 17/222 (7%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEVG+
Sbjct: 35 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 94
Query: 80 DYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTLFILIIFFSSI-------GIWIGA 129
DYG++ N +L+++ L + + + F D N + + +I G+++G
Sbjct: 95 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQGVYLGM 154
Query: 130 VGCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEIS 188
GCL +D LA FI ++S+E R+ +LK +D +K +K A Y+K M K+++
Sbjct: 155 PGCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETD-KKWASQYLKIMGKILD-Q 212
Query: 189 GEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
GE +F E AR+ L+ K+S KK+EL+ +NIL +F
Sbjct: 213 GE----DFPASELARISKLIENKMSEGKKEELQRSLNILTAF 250
>sp|P30040|ERP29_HUMAN Endoplasmic reticulum resident protein 29 OS=Homo sapiens GN=ERP29
PE=1 SV=4
Length = 261
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 18/223 (8%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEVG+
Sbjct: 35 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 94
Query: 80 DYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTLFILIIFFSSI-------GIWIGA 129
DYG++ N +L+++ L + + + F D N + + +I G+++G
Sbjct: 95 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGM 154
Query: 130 VGCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEIS 188
GCL +D LA +FIR++ E R+ LLK +D +K + +K AE Y+K M K+++
Sbjct: 155 PGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVK-ETQKKWAEQYLKIMGKILD-Q 212
Query: 189 GEGSESEFLTREKARLKGLLNQ-KVSAQKKDELKSRMNILDSF 230
GE +F E R+ L+ + K+S KK+EL+ +NIL +F
Sbjct: 213 GE----DFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 251
>sp|O44342|WBL_DROME Protein windbeutel OS=Drosophila melanogaster GN=wbl PE=1 SV=1
Length = 257
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 131/241 (54%), Gaps = 20/241 (8%)
Query: 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESS-KHQPDFLVAEV 76
V G V LD +F+K + +F ++VKFDIAYPYG KHEAF ++S+ K D L+A V
Sbjct: 22 VTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYGEKHEAFTAFSKSAHKATKDLLIATV 81
Query: 77 GVKDYGERDNEDLAKRGCLT----PQLLWAFCVADS-------LNKTLFILIIFFSS-IG 124
GVKDYGE +N+ L R + P + AD ++ TL L F S+
Sbjct: 82 GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 141
Query: 125 IWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKL 184
++IG GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+
Sbjct: 142 LYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKI 201
Query: 185 VEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALY--VKSSGGRDE 242
E+ +FL E RL L KV+ KK+EL ++NIL+ F ++ K++ ++E
Sbjct: 202 HEVG-----YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPEKEE 256
Query: 243 L 243
L
Sbjct: 257 L 257
>sp|P81628|ERP29_CHICK Endoplasmic reticulum resident protein 29 (Fragment) OS=Gallus
gallus GN=ERP29 PE=1 SV=2
Length = 228
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 17/202 (8%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG V LDT F K++ K LVKFD YPYG K + F ++AESS D LVAEVG+
Sbjct: 26 TKGSVPLDTITFYKVIPKHKFVLVKFDTQYPYGEKQDEFKKLAESSGSSEDLLVAEVGIS 85
Query: 80 DYGERDNEDLAKRGCLTPQ---LLWAFCVADSLNKTLFILII-------FFSSIGIWIGA 129
DYG++ N +L ++ L + + + F D N + I + S GI++G
Sbjct: 86 DYGDKLNTELGEKYKLDKEKYPIFYLFHDGDFDNPLPYSGHIKAGAIQRWLKSNGIYLGM 145
Query: 130 VGCLQDFDRLAKDFIRSASQ-ERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEIS 188
GCL+++D LA F+ + ER++LLK + ++ K + +KSAE Y+K M K++E
Sbjct: 146 PGCLKEYDVLASKFMSVTDKSERQSLLKKGQQSLEKAK-ETEKKSAEQYLKIMSKILE-Q 203
Query: 189 GEGSESEFLTREKARLKGLLNQ 210
GE EF E R+ L+ +
Sbjct: 204 GE----EFAANEVVRITKLIEK 221
>sp|Q86IA3|PDI1_DICDI Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1
PE=1 SV=2
Length = 363
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 127 IGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVE 186
+GA G ++ D +A +FI +A++ RK L+K A+ + D + R +YVK M+ + E
Sbjct: 264 VGA-GRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSL-PEELRTEGSYYVKVMKTIAE 321
Query: 187 ISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
S +F+T E AR+ L++ +S +K DE ++NIL+SF
Sbjct: 322 KS-----IDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360
>sp|P38661|PDIA6_MEDSA Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2
SV=1
Length = 364
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 124 GIWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKT--NSARKSAEFYVKTM 181
G G ++D D L K+F+ + +E+K + E+ E+K SA + + Y+K
Sbjct: 263 GQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEE---EVKKLEGSASRYGKIYLKVS 319
Query: 182 RKLVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFA 231
+K +E S++ E RL+ LL + +S K DEL + NIL ++A
Sbjct: 320 KKYLEKG-----SDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTYA 364
>sp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-1 OS=Oryza sativa subsp.
japonica GN=PDIL2-1 PE=2 SV=2
Length = 366
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 122 SIGIWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTM 181
S G G ++ L K+F+ +A+ +RK L E+ ++ T A K + YV +
Sbjct: 262 SKGQLTSEAGIVESLAPLVKEFLGAANDKRKEALSKMEEDVAKL-TGPAAKYGKIYVNSA 320
Query: 182 RKLVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFA 231
+K++E SE+ +E RL+ +L + +S K DE + NIL +F+
Sbjct: 321 KKIMEKG-----SEYTKKESERLQRMLEKSISPSKADEFVIKKNILSTFS 365
>sp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-2 OS=Oryza sativa subsp.
japonica GN=PDIL2-2 PE=2 SV=1
Length = 371
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 124 GIWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRK 183
G G + D LAK+F+ +A+ +RK +L + E+ ++ + SA K + Y+ +K
Sbjct: 269 GQLTSEAGRIASLDALAKEFLGAANDKRKEILSNMEEEVVKL-SGSAAKHGKVYIAIAKK 327
Query: 184 LVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFA 231
+++ ++ +E RL+ +L + +S K DE + N+L +F+
Sbjct: 328 ILDKG-----HDYTKKETERLERMLEKSISPSKADEFIIKKNVLSTFS 370
>sp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana
GN=PDIL2-1 PE=1 SV=1
Length = 361
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 122 SIGIWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTM 181
S G G ++ D L K+ + ++ E+K +L E+ +K ++ R + Y+K
Sbjct: 255 SKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTR-YGKLYLKLA 313
Query: 182 RKLVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
+ +E S++ ++E RL +L + +S K DEL + NIL +F
Sbjct: 314 KSYIEKG-----SDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
>sp|O13811|PDI2_SCHPO Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.14c PE=3 SV=1
Length = 359
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 121 SSIGIWIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKT 180
S G + G + FD A +F+ ++ ++ +L+ + L E +S+R + ++Y K
Sbjct: 254 SPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQLALE---DSSRWT-KYYKKV 309
Query: 181 MRKLVEISGEGSESEFLTREKARLKGLLNQK-VSAQKKDELKSRMNILDSF 230
K++ ++ ++ +E RL LL QK ++ D+ K+R+NIL+SF
Sbjct: 310 FEKIL------NDENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354
>sp|Q6MCB9|RNY_PARUW Ribonuclease Y OS=Protochlamydia amoebophila (strain UWE25) GN=rny
PE=3 SV=1
Length = 519
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 110 NKTLFILIIFFSSIGI-----WIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDE 164
N+ F L+IF IG+ W L F R++KD I A QE L K+ E +
Sbjct: 4 NQVPFYLLIFLVGIGLGVLTFWAYHRFALGGFKRISKDIISRAEQETSELRKTNELSLKQ 63
Query: 165 IKTNSARKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKSRM 224
+ R+ + + + +KL +E+ RLK Q++D+L+SRM
Sbjct: 64 KQVEYQRELEQMWQQERKKL-------------QQEEERLK---------QREDKLESRM 101
Query: 225 NILD 228
N+++
Sbjct: 102 NLVE 105
>sp|P03561|CAPSD_CLVK Capsid protein OS=African cassava mosaic virus (isolate West Kenyan
844) GN=AR1 PE=3 SV=1
Length = 258
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 13 TLFDLVLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFL 72
+FD S + D + ++L KFH T+V PYG K +A ++ H +
Sbjct: 159 NMFDNEPSTATIKNDLRDRFQVLRKFHATVV----GGPYGMKEQALVKRFYRLNHHVTYN 214
Query: 73 VAEVGVKDYGERDNEDLAKRGCLTPQLLWAFCV--ADSLNKTLFILIIFFSSIG 124
E G Y L LL+ C ++ + TL I I F+ SIG
Sbjct: 215 HQEAG--KYENHTENAL---------LLYMACTHASNPVYATLKIRIYFYDSIG 257
>sp|C0QGP3|Y400_DESAH Probable transcriptional regulatory protein HRM2_04000
OS=Desulfobacterium autotrophicum (strain ATCC 43914 /
DSM 3382 / HRM2) GN=HRM2_04000 PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 104 CVADSLNKTLFILIIFFSSIGIWIGAVGCLQ-DFDRLAKDFIRSASQERKTLLK-----S 157
C+ D+ N+T+ + FS G IG GC+ FD+ I + TL++
Sbjct: 101 CLTDNKNRTIADVRYIFSKAGGNIGTDGCVAWMFDKKGLITISKEESDEDTLMEVGLEAG 160
Query: 158 AEDLWD-----EIKTNSARKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKG 206
AED+ D EI T+ A A VK + I E +E + + + RL+G
Sbjct: 161 AEDVTDEGDCFEIITDPADFDA---VKGAVEAAGIKIEMAEVTMIPQTQTRLEG 211
>sp|P81629|ERP29_TRIVU Endoplasmic reticulum resident protein 29 (Fragment)
OS=Trichosurus vulpecula GN=ERP29 PE=1 SV=1
Length = 32
Score = 31.2 bits (69), Expect = 7.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAY 49
+KG V LDT F K++ K LVKFD Y
Sbjct: 3 TKGSVPLDTITFYKVIPKHKFVLVKFDTQY 32
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,072,169
Number of Sequences: 539616
Number of extensions: 3065184
Number of successful extensions: 9585
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9557
Number of HSP's gapped (non-prelim): 33
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)