Query psy3889
Match_columns 243
No_of_seqs 231 out of 1679
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:55:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07749 ERp29: Endoplasmic re 99.9 5.8E-26 1.3E-30 172.5 8.9 95 131-231 1-95 (95)
2 cd03007 PDI_a_ERp29_N PDIa fam 99.9 2.6E-23 5.6E-28 163.2 10.0 86 21-106 1-90 (116)
3 cd00238 ERp29c ERp29 and ERp38 99.9 4.6E-23 9.9E-28 155.9 10.3 92 133-230 1-93 (93)
4 PF07912 ERp29_N: ERp29, N-ter 99.8 2.9E-20 6.2E-25 145.5 10.4 107 18-130 1-126 (126)
5 PTZ00443 Thioredoxin domain-co 99.8 2.8E-18 6.2E-23 149.1 15.4 143 1-157 1-174 (224)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 9E-19 2E-23 137.1 8.9 84 19-111 7-99 (113)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.8E-18 3.9E-23 131.2 9.5 81 22-111 2-87 (101)
8 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.7E-18 8.1E-23 131.1 9.1 80 21-107 1-89 (108)
9 KOG0190|consensus 99.7 2E-18 4.4E-23 163.4 8.3 95 18-125 22-134 (493)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.7E-17 3.7E-22 126.2 9.4 81 22-111 2-89 (104)
11 PF00085 Thioredoxin: Thioredo 99.7 2.6E-17 5.7E-22 123.5 9.0 73 23-104 1-79 (103)
12 KOG0190|consensus 99.7 1.8E-17 3.8E-22 157.1 6.8 95 14-123 359-473 (493)
13 cd02994 PDI_a_TMX PDIa family, 99.7 9.1E-17 2E-21 121.5 9.1 77 21-107 1-82 (101)
14 KOG0910|consensus 99.7 7E-17 1.5E-21 131.0 8.5 83 20-111 42-130 (150)
15 cd03005 PDI_a_ERp46 PDIa famil 99.7 2.6E-16 5.6E-21 118.5 8.9 79 22-108 1-85 (102)
16 cd03002 PDI_a_MPD1_like PDI fa 99.7 4E-16 8.7E-21 119.1 9.1 79 22-107 1-85 (109)
17 cd03065 PDI_b_Calsequestrin_N 99.7 5.1E-16 1.1E-20 122.8 9.4 80 21-107 9-98 (120)
18 COG3118 Thioredoxin domain-con 99.6 5.9E-15 1.3E-19 131.4 16.0 77 19-104 21-105 (304)
19 cd02993 PDI_a_APS_reductase PD 99.6 9.6E-16 2.1E-20 118.3 9.0 76 22-105 2-87 (109)
20 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.1E-15 2.3E-20 115.2 8.6 78 22-107 1-84 (104)
21 cd02992 PDI_a_QSOX PDIa family 99.6 1.1E-15 2.4E-20 119.3 8.6 80 22-106 2-88 (114)
22 cd02962 TMX2 TMX2 family; comp 99.6 2.4E-15 5.2E-20 123.5 10.4 84 20-111 27-123 (152)
23 cd03001 PDI_a_P5 PDIa family, 99.6 2.9E-15 6.4E-20 112.9 9.3 76 22-106 1-82 (103)
24 cd02997 PDI_a_PDIR PDIa family 99.6 2.8E-15 6E-20 113.1 8.9 80 23-107 2-86 (104)
25 cd02954 DIM1 Dim1 family; Dim1 99.6 2.7E-15 6E-20 117.4 8.9 76 27-111 1-83 (114)
26 PTZ00102 disulphide isomerase; 99.6 3.8E-15 8.2E-20 141.1 11.6 91 21-124 32-139 (477)
27 cd02998 PDI_a_ERp38 PDIa famil 99.6 3.2E-15 7E-20 112.6 9.0 78 22-106 1-85 (105)
28 PRK09381 trxA thioredoxin; Pro 99.6 4.5E-15 9.8E-20 113.8 9.7 79 20-107 2-86 (109)
29 cd02963 TRX_DnaJ TRX domain, D 99.6 3.6E-15 7.9E-20 115.7 8.5 75 24-106 7-89 (111)
30 TIGR01126 pdi_dom protein disu 99.6 5E-15 1.1E-19 110.9 8.9 79 26-111 1-84 (102)
31 cd02956 ybbN ybbN protein fami 99.6 1.4E-14 3.1E-19 108.3 8.5 70 29-107 1-77 (96)
32 cd02985 TRX_CDSP32 TRX family, 99.6 1.7E-14 3.6E-19 110.4 8.6 78 27-111 2-86 (103)
33 cd02957 Phd_like Phosducin (Ph 99.5 1.8E-14 4E-19 111.8 8.5 80 21-111 4-91 (113)
34 PHA02278 thioredoxin-like prot 99.5 1.7E-14 3.7E-19 111.1 8.0 80 27-111 3-87 (103)
35 cd02948 TRX_NDPK TRX domain, T 99.5 3.1E-14 6.8E-19 108.6 9.2 73 26-107 5-82 (102)
36 cd02999 PDI_a_ERp44_like PDIa 99.5 2E-14 4.4E-19 109.7 8.0 69 29-106 7-82 (100)
37 PRK10996 thioredoxin 2; Provis 99.5 3.5E-14 7.7E-19 114.6 9.7 81 19-108 33-118 (139)
38 cd02961 PDI_a_family Protein D 99.5 3.9E-14 8.4E-19 104.7 8.4 76 24-106 1-81 (101)
39 cd03000 PDI_a_TMX3 PDIa family 99.5 4.3E-14 9.2E-19 107.8 8.4 73 23-104 2-80 (104)
40 KOG4277|consensus 99.5 6.5E-15 1.4E-19 131.1 4.3 82 22-114 29-127 (468)
41 TIGR00424 APS_reduc 5'-adenyly 99.5 4.4E-14 9.6E-19 134.2 10.1 79 19-105 349-437 (463)
42 TIGR01130 ER_PDI_fam protein d 99.5 5.8E-14 1.2E-18 131.6 10.5 76 22-104 2-83 (462)
43 cd02965 HyaE HyaE family; HyaE 99.5 4.5E-14 9.7E-19 110.0 8.0 82 21-111 10-98 (111)
44 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1E-13 2.2E-18 108.2 9.8 80 22-111 5-90 (113)
45 PLN02309 5'-adenylylsulfate re 99.5 9.1E-14 2E-18 131.9 10.0 79 19-104 343-430 (457)
46 PTZ00102 disulphide isomerase; 99.5 1E-13 2.3E-18 131.3 8.6 78 20-104 356-439 (477)
47 cd02986 DLP Dim1 family, Dim1- 99.5 4.1E-13 8.8E-18 104.9 9.4 71 28-107 2-79 (114)
48 PLN00410 U5 snRNP protein, DIM 99.5 3.5E-13 7.5E-18 109.4 9.3 76 27-111 10-93 (142)
49 KOG0907|consensus 99.5 4.1E-13 8.9E-18 104.0 9.3 66 36-111 19-89 (106)
50 TIGR01068 thioredoxin thioredo 99.4 4.6E-13 9.9E-18 99.7 9.0 72 26-106 1-78 (101)
51 cd02984 TRX_PICOT TRX domain, 99.4 3.8E-13 8.3E-18 100.5 8.5 72 27-107 1-79 (97)
52 KOG0912|consensus 99.4 1.6E-13 3.5E-18 122.2 6.0 80 26-114 1-101 (375)
53 cd02987 Phd_like_Phd Phosducin 99.4 1.3E-12 2.9E-17 109.6 9.2 81 20-111 61-150 (175)
54 PTZ00051 thioredoxin; Provisio 99.4 1.5E-12 3.3E-17 97.5 8.1 75 27-111 7-86 (98)
55 cd02953 DsbDgamma DsbD gamma f 99.4 1.9E-12 4.2E-17 98.4 7.2 79 28-111 1-89 (104)
56 KOG1731|consensus 99.3 6.6E-13 1.4E-17 126.6 3.6 79 21-104 39-124 (606)
57 cd02950 TxlA TRX-like protein 99.3 8.4E-12 1.8E-16 101.1 8.7 71 27-104 9-84 (142)
58 cd02975 PfPDO_like_N Pyrococcu 99.3 1.8E-11 3.9E-16 95.4 9.3 68 29-106 13-85 (113)
59 TIGR01130 ER_PDI_fam protein d 99.3 7.1E-12 1.5E-16 117.5 7.9 77 20-105 345-428 (462)
60 cd02947 TRX_family TRX family; 99.3 2.6E-11 5.6E-16 87.6 8.4 69 29-107 1-74 (93)
61 cd02949 TRX_NTR TRX domain, no 99.3 2.6E-11 5.6E-16 91.3 8.5 67 31-106 5-77 (97)
62 KOG0191|consensus 99.3 1.4E-11 3E-16 114.8 7.9 86 20-114 142-247 (383)
63 KOG0908|consensus 99.2 1.7E-11 3.6E-16 106.8 7.8 69 26-104 7-82 (288)
64 KOG0191|consensus 99.2 1.5E-11 3.3E-16 114.5 8.1 75 21-104 29-109 (383)
65 cd02988 Phd_like_VIAF Phosduci 99.2 5.7E-11 1.2E-15 101.1 9.1 78 21-111 82-167 (192)
66 TIGR01295 PedC_BrcD bacterioci 99.1 4.5E-10 9.8E-15 88.9 8.9 87 19-111 4-105 (122)
67 cd02952 TRP14_like Human TRX-r 99.1 3.7E-10 8.1E-15 89.2 7.6 79 27-107 8-101 (119)
68 cd02982 PDI_b'_family Protein 99.1 7.6E-10 1.6E-14 83.4 8.1 68 29-105 3-77 (103)
69 cd02951 SoxW SoxW family; SoxW 99.0 9.4E-10 2E-14 86.4 6.8 74 29-106 4-94 (125)
70 TIGR02187 GlrX_arch Glutaredox 98.9 4.4E-09 9.4E-14 90.6 9.2 75 23-104 117-194 (215)
71 TIGR00411 redox_disulf_1 small 98.9 4.5E-09 9.7E-14 75.9 7.0 52 42-102 3-59 (82)
72 TIGR02187 GlrX_arch Glutaredox 98.9 1.3E-08 2.8E-13 87.7 9.1 75 28-109 10-90 (215)
73 KOG0914|consensus 98.8 2.8E-08 6E-13 85.3 9.5 83 21-111 124-220 (265)
74 PTZ00062 glutaredoxin; Provisi 98.8 3.5E-08 7.6E-13 84.8 10.3 67 27-111 5-77 (204)
75 PHA02125 thioredoxin-like prot 98.8 8E-09 1.7E-13 74.5 5.2 45 42-101 2-51 (75)
76 cd02973 TRX_GRX_like Thioredox 98.8 2.1E-08 4.5E-13 70.1 6.8 51 42-102 3-58 (67)
77 cd02959 ERp19 Endoplasmic reti 98.8 1.8E-08 3.9E-13 79.1 6.4 76 28-111 9-92 (117)
78 PRK00293 dipZ thiol:disulfide 98.7 4.9E-08 1.1E-12 95.6 8.7 80 23-108 454-547 (571)
79 cd03009 TryX_like_TryX_NRX Try 98.7 7.2E-08 1.6E-12 76.0 7.3 66 37-104 17-107 (131)
80 cd02964 TryX_like_family Trypa 98.6 9.5E-08 2.1E-12 75.8 7.5 66 37-104 16-107 (132)
81 cd02955 SSP411 TRX domain, SSP 98.6 1.2E-07 2.7E-12 75.3 8.1 70 27-105 4-89 (124)
82 TIGR02738 TrbB type-F conjugat 98.6 2E-07 4.4E-12 76.6 9.1 64 35-104 47-126 (153)
83 PRK03147 thiol-disulfide oxido 98.6 1.6E-07 3.4E-12 77.2 8.3 82 25-109 48-151 (173)
84 TIGR00412 redox_disulf_2 small 98.6 1.6E-07 3.4E-12 68.1 6.3 48 43-102 3-55 (76)
85 cd02966 TlpA_like_family TlpA- 98.5 2.3E-07 5.1E-12 69.2 6.5 65 37-104 18-105 (116)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 3.9E-07 8.5E-12 68.2 7.2 58 38-102 12-71 (89)
87 TIGR02740 TraF-like TraF-like 98.5 3.7E-07 8E-12 81.7 7.6 63 37-105 165-238 (271)
88 PRK14018 trifunctional thiored 98.5 5.2E-07 1.1E-11 87.3 8.9 66 36-104 54-147 (521)
89 PRK11509 hydrogenase-1 operon 98.5 1.3E-06 2.9E-11 70.1 9.5 81 22-108 18-103 (132)
90 cd02967 mauD Methylamine utili 98.5 4.2E-07 9.1E-12 69.5 6.3 59 37-101 20-83 (114)
91 cd03008 TryX_like_RdCVF Trypar 98.4 6.6E-07 1.4E-11 73.1 7.1 41 37-79 24-74 (146)
92 PF13905 Thioredoxin_8: Thiore 98.4 7.1E-07 1.5E-11 66.2 6.5 40 38-79 1-44 (95)
93 cd03010 TlpA_like_DsbE TlpA-li 98.3 1.5E-06 3.3E-11 67.9 6.6 61 37-103 24-107 (127)
94 PF13098 Thioredoxin_2: Thiore 98.3 6.6E-07 1.4E-11 68.3 4.1 67 36-104 3-90 (112)
95 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 1.9E-06 4E-11 66.8 6.4 74 26-107 8-104 (123)
96 KOG0913|consensus 98.1 8.6E-07 1.9E-11 76.9 1.8 84 19-114 22-121 (248)
97 TIGR00385 dsbE periplasmic pro 98.1 6E-06 1.3E-10 68.6 6.8 37 36-79 61-101 (173)
98 cd02958 UAS UAS family; UAS is 98.1 1.6E-05 3.4E-10 61.5 8.6 68 30-104 5-84 (114)
99 PLN02919 haloacid dehalogenase 98.1 9.3E-06 2E-10 84.9 9.2 65 37-104 419-510 (1057)
100 PF13899 Thioredoxin_7: Thiore 98.1 7E-06 1.5E-10 59.9 5.9 62 33-104 12-81 (82)
101 PRK15412 thiol:disulfide inter 98.1 1.1E-05 2.4E-10 67.8 7.9 37 36-79 66-106 (185)
102 cd03012 TlpA_like_DipZ_like Tl 98.1 1.4E-05 3E-10 62.7 7.5 60 37-99 22-89 (126)
103 COG0526 TrxA Thiol-disulfide i 98.0 1.4E-05 3.1E-10 58.4 6.1 64 38-109 32-102 (127)
104 PTZ00056 glutathione peroxidas 98.0 1.3E-05 2.7E-10 68.6 6.2 62 37-101 38-109 (199)
105 smart00594 UAS UAS domain. 98.0 3.5E-05 7.6E-10 60.6 8.0 69 29-104 14-94 (122)
106 COG4232 Thiol:disulfide interc 98.0 1.7E-05 3.7E-10 77.0 6.9 77 24-104 457-542 (569)
107 TIGR02540 gpx7 putative glutat 97.9 2.5E-05 5.4E-10 63.4 6.5 62 37-101 21-93 (153)
108 COG2143 Thioredoxin-related pr 97.9 7.2E-05 1.6E-09 61.5 8.8 107 1-111 1-131 (182)
109 cd00340 GSH_Peroxidase Glutath 97.9 3E-05 6.5E-10 63.0 6.4 61 37-101 21-92 (152)
110 TIGR02196 GlrX_YruB Glutaredox 97.9 4.2E-05 9E-10 53.1 6.1 56 42-104 2-58 (74)
111 PLN02412 probable glutathione 97.8 4.5E-05 9.8E-10 63.2 6.5 63 37-102 28-101 (167)
112 PLN02399 phospholipid hydroper 97.8 3.6E-05 7.9E-10 67.6 5.9 61 37-100 98-169 (236)
113 cd02960 AGR Anterior Gradient 97.8 6.6E-05 1.4E-09 60.2 6.3 72 30-111 11-95 (130)
114 PF08534 Redoxin: Redoxin; In 97.8 5.4E-05 1.2E-09 60.4 5.7 59 37-100 27-90 (146)
115 cd01659 TRX_superfamily Thiore 97.7 9.5E-05 2.1E-09 48.0 5.4 53 42-104 1-61 (69)
116 PF03190 Thioredox_DsbH: Prote 97.7 0.00012 2.7E-09 60.7 6.9 116 23-162 22-159 (163)
117 TIGR02180 GRX_euk Glutaredoxin 97.7 8.8E-05 1.9E-09 53.4 5.2 58 42-101 1-59 (84)
118 PRK13728 conjugal transfer pro 97.7 0.00024 5.2E-09 60.0 8.5 57 42-104 73-144 (181)
119 PF01216 Calsequestrin: Calseq 97.6 0.00027 5.9E-09 64.8 8.5 90 22-120 35-145 (383)
120 PRK10606 btuE putative glutath 97.6 0.00031 6.7E-09 59.4 7.9 78 37-123 24-115 (183)
121 TIGR02661 MauD methylamine deh 97.6 0.0002 4.3E-09 60.5 6.7 27 37-65 73-103 (189)
122 PF02114 Phosducin: Phosducin; 97.5 0.00046 1E-08 61.7 8.4 80 21-111 125-213 (265)
123 cd02969 PRX_like1 Peroxiredoxi 97.4 0.00051 1.1E-08 56.6 7.3 40 37-79 24-67 (171)
124 PTZ00256 glutathione peroxidas 97.3 0.00055 1.2E-08 57.5 6.5 62 37-101 39-112 (183)
125 PF13192 Thioredoxin_3: Thiore 97.3 0.00046 1E-08 49.7 5.2 52 43-102 3-55 (76)
126 TIGR01626 ytfJ_HI0045 conserve 97.3 0.00097 2.1E-08 56.5 7.9 25 37-63 58-86 (184)
127 PRK00522 tpx lipid hydroperoxi 97.3 0.00056 1.2E-08 56.6 6.3 57 37-100 43-105 (167)
128 KOG2603|consensus 97.3 0.0022 4.8E-08 58.1 10.3 96 19-125 38-168 (331)
129 PRK15317 alkyl hydroperoxide r 97.3 0.0014 3.1E-08 63.4 9.9 74 22-102 99-175 (517)
130 PF00578 AhpC-TSA: AhpC/TSA fa 97.3 0.00037 8.1E-09 53.5 4.7 60 37-101 24-88 (124)
131 TIGR03143 AhpF_homolog putativ 97.3 0.0011 2.4E-08 64.8 8.9 74 22-102 459-535 (555)
132 cd03018 PRX_AhpE_like Peroxire 97.3 0.00055 1.2E-08 54.6 5.5 57 39-100 29-90 (149)
133 TIGR02200 GlrX_actino Glutared 97.2 0.00082 1.8E-08 47.3 5.6 51 42-104 2-58 (77)
134 cd02991 UAS_ETEA UAS family, E 97.2 0.0013 2.7E-08 51.6 7.0 59 36-104 15-84 (116)
135 PF13848 Thioredoxin_6: Thiore 97.2 0.0016 3.6E-08 53.3 8.1 75 21-104 77-159 (184)
136 cd02970 PRX_like2 Peroxiredoxi 97.2 0.00083 1.8E-08 53.2 6.1 58 38-100 24-85 (149)
137 PF13728 TraF: F plasmid trans 97.2 0.0017 3.6E-08 56.3 8.3 62 37-104 119-191 (215)
138 cd02981 PDI_b_family Protein D 97.2 0.0036 7.7E-08 46.3 8.6 69 25-105 3-73 (97)
139 cd02968 SCO SCO (an acronym fo 97.1 0.0015 3.2E-08 51.5 6.5 60 37-98 21-89 (142)
140 cd03014 PRX_Atyp2cys Peroxired 97.1 0.0013 2.9E-08 52.2 6.3 57 37-100 25-87 (143)
141 cd03017 PRX_BCP Peroxiredoxin 97.1 0.0012 2.7E-08 51.9 5.6 59 37-100 22-85 (140)
142 PF14595 Thioredoxin_9: Thiore 96.9 0.0025 5.3E-08 51.0 5.8 77 25-111 27-113 (129)
143 cd02971 PRX_family Peroxiredox 96.9 0.0024 5.3E-08 50.1 5.7 59 37-100 21-85 (140)
144 TIGR03140 AhpF alkyl hydropero 96.9 0.007 1.5E-07 58.7 10.0 75 22-103 100-177 (515)
145 KOG3425|consensus 96.8 0.0057 1.2E-07 48.2 7.1 75 28-104 12-103 (128)
146 TIGR03137 AhpC peroxiredoxin. 96.8 0.0026 5.6E-08 53.6 5.6 40 37-79 30-74 (187)
147 PRK11200 grxA glutaredoxin 1; 96.7 0.0061 1.3E-07 44.5 6.6 67 42-111 3-77 (85)
148 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.0055 1.2E-07 42.1 6.0 56 42-104 2-58 (73)
149 PRK09437 bcp thioredoxin-depen 96.7 0.0036 7.8E-08 50.5 5.6 59 37-100 29-92 (154)
150 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0047 1E-07 44.1 5.3 56 42-101 2-58 (82)
151 cd03015 PRX_Typ2cys Peroxiredo 96.6 0.0051 1.1E-07 50.9 6.0 40 37-79 28-72 (173)
152 PRK10382 alkyl hydroperoxide r 96.6 0.0052 1.1E-07 52.1 5.9 59 37-100 30-97 (187)
153 cd03072 PDI_b'_ERp44 PDIb' fam 96.5 0.014 3.1E-07 45.2 7.8 79 23-111 1-87 (111)
154 PF06110 DUF953: Eukaryotic pr 96.5 0.0029 6.3E-08 50.0 3.5 79 29-110 6-103 (119)
155 KOG1672|consensus 96.4 0.0062 1.4E-07 51.8 5.1 79 23-111 68-155 (211)
156 TIGR02739 TraF type-F conjugat 96.3 0.014 3.1E-07 51.9 7.3 62 37-104 149-221 (256)
157 TIGR02183 GRXA Glutaredoxin, G 96.3 0.024 5.1E-07 41.7 7.4 68 42-114 2-77 (86)
158 cd02983 P5_C P5 family, C-term 96.3 0.066 1.4E-06 42.7 10.3 74 22-104 3-89 (130)
159 PF00462 Glutaredoxin: Glutare 96.3 0.0086 1.9E-07 40.7 4.5 54 42-102 1-55 (60)
160 PF05768 DUF836: Glutaredoxin- 96.2 0.017 3.6E-07 42.1 6.2 55 42-103 2-56 (81)
161 KOG0911|consensus 96.2 0.0029 6.2E-08 54.9 2.1 65 28-104 9-78 (227)
162 KOG3414|consensus 95.9 0.034 7.4E-07 44.3 7.0 66 30-104 13-85 (142)
163 PRK13703 conjugal pilus assemb 95.9 0.035 7.5E-07 49.2 7.7 62 37-104 142-214 (248)
164 TIGR02190 GlrX-dom Glutaredoxi 95.9 0.027 5.9E-07 40.5 5.9 64 40-111 8-76 (79)
165 KOG2501|consensus 95.8 0.016 3.5E-07 47.8 5.0 41 37-79 32-77 (157)
166 PF07449 HyaE: Hydrogenase-1 e 95.8 0.039 8.5E-07 42.8 6.7 75 20-104 8-90 (107)
167 cd02066 GRX_family Glutaredoxi 95.6 0.035 7.6E-07 37.7 5.2 53 42-101 2-55 (72)
168 cd03016 PRX_1cys Peroxiredoxin 95.5 0.03 6.5E-07 47.8 5.5 37 40-79 28-68 (203)
169 PRK15000 peroxidase; Provision 95.5 0.037 8E-07 47.3 6.0 40 37-79 33-77 (200)
170 TIGR02189 GlrX-like_plant Glut 95.4 0.036 7.8E-07 42.0 5.1 59 33-101 3-66 (99)
171 TIGR02181 GRX_bact Glutaredoxi 95.3 0.03 6.5E-07 39.9 4.2 52 43-101 2-54 (79)
172 PTZ00137 2-Cys peroxiredoxin; 95.2 0.045 9.8E-07 48.9 5.9 40 37-79 97-141 (261)
173 PRK13190 putative peroxiredoxi 95.2 0.053 1.2E-06 46.2 6.2 40 37-79 26-70 (202)
174 PRK13599 putative peroxiredoxi 95.2 0.039 8.5E-07 47.7 5.4 40 37-79 27-71 (215)
175 PHA03050 glutaredoxin; Provisi 95.0 0.082 1.8E-06 40.8 6.1 65 32-101 7-74 (108)
176 PRK13191 putative peroxiredoxi 94.9 0.052 1.1E-06 46.9 5.4 40 37-79 32-76 (215)
177 cd03067 PDI_b_PDIR_N PDIb fami 94.7 0.12 2.6E-06 39.7 6.3 63 27-96 8-73 (112)
178 cd03029 GRX_hybridPRX5 Glutare 94.5 0.16 3.4E-06 35.6 6.1 62 42-111 3-69 (72)
179 cd03418 GRX_GRXb_1_3_like Glut 94.4 0.1 2.2E-06 36.5 5.0 54 42-102 2-57 (75)
180 TIGR02194 GlrX_NrdH Glutaredox 94.4 0.099 2.2E-06 36.8 5.0 49 43-102 2-54 (72)
181 cd03066 PDI_b_Calsequestrin_mi 94.4 0.55 1.2E-05 35.3 9.3 77 23-111 2-82 (102)
182 cd02972 DsbA_family DsbA famil 93.8 0.21 4.5E-06 35.6 5.8 58 42-103 1-90 (98)
183 cd03027 GRX_DEP Glutaredoxin ( 93.8 0.19 4.1E-06 35.3 5.4 54 42-102 3-57 (73)
184 cd03068 PDI_b_ERp72 PDIb famil 93.4 0.95 2.1E-05 34.6 9.1 69 24-104 3-74 (107)
185 cd03069 PDI_b_ERp57 PDIb famil 93.3 0.77 1.7E-05 34.7 8.5 65 27-104 7-72 (104)
186 PRK13189 peroxiredoxin; Provis 93.3 0.17 3.8E-06 43.8 5.4 40 37-79 34-78 (222)
187 TIGR00365 monothiol glutaredox 93.3 0.37 8.1E-06 36.3 6.5 67 31-102 5-73 (97)
188 PRK10329 glutaredoxin-like pro 93.1 0.29 6.4E-06 35.6 5.6 53 42-102 3-56 (81)
189 TIGR03143 AhpF_homolog putativ 93.1 0.39 8.5E-06 47.1 8.1 61 37-104 365-427 (555)
190 PRK10638 glutaredoxin 3; Provi 92.7 0.28 6.1E-06 35.4 5.0 53 42-101 4-57 (83)
191 cd03020 DsbA_DsbC_DsbG DsbA fa 92.6 0.24 5.3E-06 41.7 5.3 17 37-55 76-92 (197)
192 PTZ00253 tryparedoxin peroxida 92.4 0.26 5.6E-06 41.8 5.2 41 37-79 35-79 (199)
193 cd03028 GRX_PICOT_like Glutare 92.1 0.43 9.4E-06 35.2 5.4 65 33-102 3-69 (90)
194 PF11009 DUF2847: Protein of u 92.0 0.39 8.5E-06 37.1 5.2 76 27-107 6-89 (105)
195 COG0695 GrxC Glutaredoxin and 92.0 0.47 1E-05 34.5 5.4 56 42-103 3-60 (80)
196 PF02966 DIM1: Mitosis protein 91.7 0.8 1.7E-05 36.8 6.8 66 29-103 9-81 (133)
197 PRK10954 periplasmic protein d 91.2 0.67 1.4E-05 39.5 6.4 37 38-78 37-80 (207)
198 COG1331 Highly conserved prote 90.9 1.5 3.1E-05 44.1 9.2 121 22-166 27-169 (667)
199 cd03023 DsbA_Com1_like DsbA fa 90.8 0.44 9.6E-06 37.3 4.6 27 37-65 4-34 (154)
200 KOG2792|consensus 89.6 1.4 3.1E-05 39.3 7.1 78 37-143 138-222 (280)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 88.4 3.1 6.7E-05 32.1 7.6 77 24-111 2-90 (111)
202 KOG1752|consensus 88.1 2.2 4.9E-05 32.8 6.5 76 30-111 6-86 (104)
203 PF13848 Thioredoxin_6: Thiore 88.0 1.6 3.4E-05 35.4 6.1 52 56-123 10-75 (184)
204 COG1225 Bcp Peroxiredoxin [Pos 87.9 1.4 3.1E-05 36.4 5.7 61 37-101 29-93 (157)
205 PTZ00062 glutaredoxin; Provisi 87.8 1.4 3.1E-05 37.9 5.9 69 29-102 104-174 (204)
206 PRK10877 protein disulfide iso 87.2 1.2 2.7E-05 38.8 5.3 18 85-102 190-208 (232)
207 COG0386 BtuE Glutathione perox 85.8 2.6 5.6E-05 34.9 6.0 74 36-111 23-109 (162)
208 KOG3170|consensus 85.3 3.1 6.7E-05 36.0 6.4 73 22-107 92-172 (240)
209 PF13462 Thioredoxin_4: Thiore 85.3 1.5 3.2E-05 34.9 4.4 40 37-78 11-54 (162)
210 PRK12759 bifunctional gluaredo 84.6 2 4.3E-05 40.8 5.6 54 42-103 4-67 (410)
211 cd03013 PRX5_like Peroxiredoxi 84.5 3.1 6.6E-05 33.8 6.0 57 38-98 29-93 (155)
212 cd03019 DsbA_DsbA DsbA family, 84.1 2 4.4E-05 34.7 4.8 38 37-78 14-55 (178)
213 PRK10824 glutaredoxin-4; Provi 82.6 3.3 7.2E-05 32.4 5.2 64 31-101 8-75 (115)
214 KOG3171|consensus 82.6 5.5 0.00012 34.8 6.9 82 22-111 139-226 (273)
215 PF02630 SCO1-SenC: SCO1/SenC; 69.9 14 0.00029 30.6 5.9 54 37-94 51-110 (174)
216 COG3019 Predicted metal-bindin 68.7 14 0.00029 30.2 5.3 62 40-114 26-99 (149)
217 PF00837 T4_deiodinase: Iodoth 62.9 8.4 0.00018 34.0 3.3 49 17-67 78-133 (237)
218 COG1999 Uncharacterized protei 62.6 54 0.0012 28.0 8.3 64 37-104 66-138 (207)
219 PF07304 SRA1: Steroid recepto 59.8 16 0.00035 30.0 4.4 33 200-232 50-82 (157)
220 cd03031 GRX_GRX_like Glutaredo 56.9 28 0.00061 28.3 5.3 63 42-111 2-79 (147)
221 cd03060 GST_N_Omega_like GST_N 56.3 57 0.0012 22.1 6.2 51 44-102 3-54 (71)
222 PF09851 SHOCT: Short C-termin 54.0 25 0.00055 20.7 3.4 26 198-223 2-28 (31)
223 PF08971 GlgS: Glycogen synthe 49.3 23 0.0005 25.0 3.0 37 193-229 10-54 (66)
224 PRK02922 glycogen synthesis pr 47.5 34 0.00074 24.2 3.7 39 193-231 11-57 (67)
225 PHA03075 glutaredoxin-like pro 47.2 26 0.00056 27.7 3.4 37 39-79 2-38 (123)
226 PRK11657 dsbG disulfide isomer 46.1 36 0.00078 30.0 4.6 25 37-63 116-141 (251)
227 PRK01194 V-type ATP synthase s 46.0 1.8E+02 0.0039 24.4 10.0 32 136-167 3-34 (185)
228 PF12137 RapA_C: RNA polymeras 43.0 1.1E+02 0.0023 28.8 7.4 39 194-232 307-347 (362)
229 PF14424 Toxin-deaminase: The 42.6 43 0.00094 26.8 4.2 32 42-76 98-130 (133)
230 cd00570 GST_N_family Glutathio 42.5 88 0.0019 19.8 5.8 51 45-102 4-55 (71)
231 KOG2640|consensus 40.6 9.3 0.0002 35.0 0.0 66 37-111 75-156 (319)
232 PF05565 Sipho_Gp157: Siphovir 40.1 1.5E+02 0.0032 24.4 7.1 43 172-222 40-82 (162)
233 PF09673 TrbC_Ftype: Type-F co 39.1 48 0.001 25.5 3.8 41 56-105 39-80 (113)
234 PF13743 Thioredoxin_5: Thiore 36.8 28 0.00061 28.8 2.4 18 87-104 137-155 (176)
235 PF09862 DUF2089: Protein of u 35.1 10 0.00022 29.7 -0.5 16 86-101 52-67 (113)
236 cd02978 KaiB_like KaiB-like fa 35.1 1.4E+02 0.0029 21.5 5.3 40 56-101 20-60 (72)
237 COG1651 DsbG Protein-disulfide 33.9 70 0.0015 27.3 4.5 42 23-66 67-111 (244)
238 PRK09301 circadian clock prote 33.5 1.3E+02 0.0028 23.1 5.3 58 39-104 6-69 (103)
239 TIGR02654 circ_KaiB circadian 31.4 1.5E+02 0.0034 22.0 5.3 43 56-104 22-66 (87)
240 PF13743 Thioredoxin_5: Thiore 31.1 41 0.0009 27.8 2.5 22 44-67 2-27 (176)
241 COG5429 Uncharacterized secret 31.1 1.2E+02 0.0026 27.0 5.3 38 40-79 43-80 (261)
242 PF09180 ProRS-C_1: Prolyl-tRN 27.8 36 0.00078 23.8 1.3 20 29-54 2-21 (68)
243 cd03045 GST_N_Delta_Epsilon GS 27.4 1.9E+02 0.0042 19.2 6.3 53 44-101 3-56 (74)
244 cd03051 GST_N_GTT2_like GST_N 26.6 1.9E+02 0.0042 19.0 6.5 54 44-102 3-57 (74)
245 cd03041 GST_N_2GST_N GST_N fam 25.7 2.2E+02 0.0048 19.5 5.2 51 45-102 5-56 (77)
246 PF06764 DUF1223: Protein of u 25.2 1.2E+02 0.0026 26.0 4.3 37 44-82 4-40 (202)
247 cd03025 DsbA_FrnE_like DsbA fa 24.7 94 0.002 25.2 3.5 23 42-66 3-29 (193)
248 PF04592 SelP_N: Selenoprotein 24.6 89 0.0019 27.6 3.4 42 36-79 24-71 (238)
249 COG3634 AhpF Alkyl hydroperoxi 24.2 5E+02 0.011 24.9 8.3 72 26-104 103-177 (520)
250 PF09363 XFP_C: XFP C-terminal 23.1 36 0.00078 29.4 0.7 29 22-51 83-111 (203)
251 PF04134 DUF393: Protein of un 22.4 1.4E+02 0.0029 22.3 3.8 45 45-96 2-46 (114)
252 PRK10246 exonuclease subunit S 22.4 5.2E+02 0.011 27.7 9.3 69 141-228 159-229 (1047)
253 KOG1498|consensus 22.0 2.4E+02 0.0052 27.0 5.9 32 171-208 106-137 (439)
254 PF00255 GSHPx: Glutathione pe 21.2 3.8E+02 0.0083 20.5 6.9 45 37-84 20-67 (108)
255 PF01323 DSBA: DSBA-like thior 20.5 91 0.002 25.2 2.6 23 41-65 1-27 (193)
256 KOG2757|consensus 20.4 7.5E+02 0.016 23.5 9.0 51 171-226 180-233 (411)
257 KOG3478|consensus 20.4 1.4E+02 0.003 23.4 3.3 15 194-208 78-92 (120)
258 smart00302 GED Dynamin GTPase 20.4 1.7E+02 0.0038 21.5 3.9 29 203-231 57-86 (92)
No 1
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=99.93 E-value=5.8e-26 Score=172.54 Aligned_cols=95 Identities=40% Similarity=0.701 Sum_probs=84.4
Q ss_pred ccchhhHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhcc
Q psy3889 131 GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQ 210 (243)
Q Consensus 131 G~i~~~d~l~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l~~ 210 (243)
|||++||.|+.+|+.++.++|.++++++++.++.+.+.. .++++||+++|+||+++ |++|+++|++||++||+|
T Consensus 1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~-~~~a~~Yvkvm~Ki~~~-----g~~fv~~E~~RL~~lL~~ 74 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSA-AKYAKYYVKVMEKIIEK-----GEEFVAKEIARLERLLEG 74 (95)
T ss_dssp T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCC-HHHHHHHHHHHHHHHHS-----GTHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchh-hHhHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHhc
Confidence 899999999999999876899999999999998886433 38899999999999999 999999999999999999
Q ss_pred cCChhhHHHHHHHhhHHHHhh
Q psy3889 211 KVSAQKKDELKSRMNILDSFA 231 (243)
Q Consensus 211 ~~~~~k~d~~~~r~NIL~~F~ 231 (243)
+++++|+|+|++|+|||++|+
T Consensus 75 ~l~~~K~del~~R~NIL~~F~ 95 (95)
T PF07749_consen 75 KLSPEKKDELQKRLNILSSFQ 95 (95)
T ss_dssp SS-HHHHHHHHHHHHHHHCTS
T ss_pred cCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999994
No 2
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.89 E-value=2.6e-23 Score=163.22 Aligned_cols=86 Identities=53% Similarity=0.809 Sum_probs=77.9
Q ss_pred CCceEcChhhHHHHhccCCeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc---
Q psy3889 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT--- 96 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~--- 96 (243)
+++++||++||+++|.+++.|||+|||+||||+..|.|.+||.++. ..++|++|+|||+||++.+|.+||++|+|+
T Consensus 1 ~g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 1 KGCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred CCeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 4789999999999999999999999999999997799999998874 345699999999999988899999999996
Q ss_pred CceEEEeccc
Q psy3889 97 PQLLWAFCVA 106 (243)
Q Consensus 97 ~PTi~lF~~~ 106 (243)
||||++|++.
T Consensus 81 yPTl~lF~~g 90 (116)
T cd03007 81 YPVIYLFHGG 90 (116)
T ss_pred CCEEEEEeCC
Confidence 9999999844
No 3
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=99.89 E-value=4.6e-23 Score=155.88 Aligned_cols=92 Identities=38% Similarity=0.700 Sum_probs=84.0
Q ss_pred chhhHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhcc-c
Q psy3889 133 LQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQ-K 211 (243)
Q Consensus 133 i~~~d~l~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l~~-~ 211 (243)
++.||+|+.+|++++++.+.++++++++.++.++ +.+.++++||+++|+||+++ |.+|+++|++||++||+| .
T Consensus 1 i~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~-~~~~~~a~~Y~kvm~Ki~~k-----g~~yv~~E~~RL~~iL~~~~ 74 (93)
T cd00238 1 IEELDELAKEFVDASDEERKELLEKVKEAVEKLK-EAEAKYAKYYVKVMEKILEK-----GEDYVEKELARLERLLEKKG 74 (93)
T ss_pred ChhHHHHHHHHhccchhHHHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHhcCC
Confidence 4679999999999777789999999999999886 34569999999999999999 999999999999999965 5
Q ss_pred CChhhHHHHHHHhhHHHHh
Q psy3889 212 VSAQKKDELKSRMNILDSF 230 (243)
Q Consensus 212 ~~~~k~d~~~~r~NIL~~F 230 (243)
++++|+|+|++|+|||++|
T Consensus 75 ls~~K~del~~R~NIL~~F 93 (93)
T cd00238 75 LAPEKADELTRRLNILRSF 93 (93)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 6999999999999999998
No 4
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=99.83 E-value=2.9e-20 Score=145.54 Aligned_cols=107 Identities=49% Similarity=0.835 Sum_probs=90.4
Q ss_pred hcCCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCcHHHHHHH-HHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVA-ESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 18 ~~~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~~lA-~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
++++++++|++.||+++|.+.+.+||+|..+|||++.+..|.++| +..+..+++.+|.|.+.|||+++|.+|+++|+|.
T Consensus 1 ~~~~G~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 1 LHCKGCVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp --STTSEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred CccCceeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 467899999999999999999999999999999999999999999 6666778999999999999999999999999996
Q ss_pred ---CceEEEec---------------cchHhhhhhhHHHHhhhhcccccCcC
Q psy3889 97 ---PQLLWAFC---------------VADSLNKTLFILIIFFSSIGIWIGAV 130 (243)
Q Consensus 97 ---~PTi~lF~---------------~~~~l~~~~f~~~~i~~~~g~~~~~~ 130 (243)
||.+++|. +.++|.+ | +..++|+|++.|
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~--f----vk~~t~~yiglp 126 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQR--F----VKSNTGLYIGLP 126 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHH--H----HHHTSS--TTST
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHH--H----HHhCCCeeecCC
Confidence 99999998 6789999 9 999999998764
No 5
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.79 E-value=2.8e-18 Score=149.07 Aligned_cols=143 Identities=24% Similarity=0.252 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHhhhhhh---------hcCCCceEcChhhHHHHhcc-----CCeEEEEEEecCCCCCCc----HHHHHHH
Q psy3889 1 MIKWICTLYFSVTLFDL---------VLSKGHVSLDTHNFDKILSK-----FHTTLVKFDIAYPYGAKH----EAFLEVA 62 (243)
Q Consensus 1 ~~~~~~~l~~~~~~~~~---------~~~~~v~~L~~~nF~~~v~~-----~k~vlV~FyA~~pWC~~c----p~~~~lA 62 (243)
|+.|++++++.+....+ ...+.+++|+++||++.+.. +++++|.||| |||+|| |.|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA--pWC~~Ck~~~P~~e~la 78 (224)
T PTZ00443 1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYA--PWCSHCRKMAPAWERLA 78 (224)
T ss_pred CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEEC--CCChHHHHHHHHHHHHH
Confidence 67777666655553211 12467999999999998842 4799999999 999999 9999999
Q ss_pred HHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec------------cchHhhhhhhHHHHhhhhcccccCc
Q psy3889 63 ESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC------------VADSLNKTLFILIIFFSSIGIWIGA 129 (243)
Q Consensus 63 ~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~------------~~~~l~~~~f~~~~i~~~~g~~~~~ 129 (243)
+.+++ .+.+++|||+ .+++++++|+|+ |||+++|+ +.++|.+ |+.+.+....+. +.
T Consensus 79 ~~~~~--~v~~~~VD~~-----~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~--fi~~~~~~~~~~--~~ 147 (224)
T PTZ00443 79 KALKG--QVNVADLDAT-----RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAA--FALGDFKKALGA--PV 147 (224)
T ss_pred HHcCC--CeEEEEecCc-----ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHH--HHHHHHHhhcCC--CC
Confidence 99864 6899999997 789999999999 99999997 5788888 855555433221 23
Q ss_pred CccchhhHHHHHHHHhhcHHHHHHHHHH
Q psy3889 130 VGCLQDFDRLAKDFIRSASQERKTLLKS 157 (243)
Q Consensus 130 ~G~i~~~d~l~~~f~~~~~~~~~~~l~~ 157 (243)
|.... ...++.+++.++......++..
T Consensus 148 p~p~~-~~~~~~~~~~~~~~~~~~~~~~ 174 (224)
T PTZ00443 148 PAPLS-FFALTIDFFVSGTNEALRIYDA 174 (224)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 5556777766544333334433
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.78 E-value=9e-19 Score=137.06 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=73.9
Q ss_pred cCCCceEcChhhHHHH---hccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHH-
Q psy3889 19 LSKGHVSLDTHNFDKI---LSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLA- 90 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~---v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~- 90 (243)
..+.|++|++.||++. +++++.++|.||| |||+|| |.|+++|+.+++ .+.|++|||+ .+.++|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA--~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d-----~~~~l~~ 77 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYA--PWDAQSQAARQEFEQVAQKLSD--QVLFVAINCW-----WPQGKCR 77 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECC-----CChHHHH
Confidence 3467999999999986 4889999999999 999999 999999999854 6999999997 788999
Q ss_pred hhcCcc-CceEEEeccchHhhh
Q psy3889 91 KRGCLT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 91 ~~~~V~-~PTi~lF~~~~~l~~ 111 (243)
++|+|+ ||||++|++++....
T Consensus 78 ~~~~I~~~PTl~lf~~g~~~~~ 99 (113)
T cd03006 78 KQKHFFYFPVIHLYYRSRGPIE 99 (113)
T ss_pred HhcCCcccCEEEEEECCccceE
Confidence 599999 999999996655544
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.77 E-value=1.8e-18 Score=131.18 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=72.4
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
.+++|+..||++.+..+++++|.||+ |||++| |.|+++|+.+++ .+.|++|||+ +++.+|++|+|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a--~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~-----~~~~~~~~~~v~~ 72 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYS--PRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCG-----DDRMLCRSQGVNS 72 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEEC--CCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCC-----ccHHHHHHcCCCc
Confidence 57899999999999778999999999 999999 999999999864 6999999998 789999999999
Q ss_pred CceEEEeccchHhhh
Q psy3889 97 PQLLWAFCVADSLNK 111 (243)
Q Consensus 97 ~PTi~lF~~~~~l~~ 111 (243)
|||+++|+++.....
T Consensus 73 ~Pt~~~~~~g~~~~~ 87 (101)
T cd03003 73 YPSLYVFPSGMNPEK 87 (101)
T ss_pred cCEEEEEcCCCCccc
Confidence 999999986544333
No 8
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=3.7e-18 Score=131.09 Aligned_cols=80 Identities=25% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCC----CCcEEEEEecccCCCcccHHHHhh
Q psy3889 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQ----PDFLVAEVGVKDYGERDNEDLAKR 92 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~----~~v~vakVd~~d~~~~~n~~l~~~ 92 (243)
+++++|+++||++++..+++++|.||| |||++| |.|+++++.+++. .++.+++|||+ .+.++|++
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a--~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d-----~~~~l~~~ 73 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYA--DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD-----KESDIADR 73 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEEC--CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC-----CCHHHHHh
Confidence 368999999999999888999999999 999999 9999999887432 35899999998 78999999
Q ss_pred cCcc-CceEEEeccch
Q psy3889 93 GCLT-PQLLWAFCVAD 107 (243)
Q Consensus 93 ~~V~-~PTi~lF~~~~ 107 (243)
|+|+ |||+++|+++.
T Consensus 74 ~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 74 YRINKYPTLKLFRNGM 89 (108)
T ss_pred CCCCcCCEEEEEeCCc
Confidence 9999 99999998554
No 9
>KOG0190|consensus
Probab=99.75 E-value=2e-18 Score=163.43 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=87.4
Q ss_pred hcCCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhh
Q psy3889 18 VLSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKR 92 (243)
Q Consensus 18 ~~~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~ 92 (243)
...+.|+.|+.+||+..|..+..++|+||| |||+|| |.|++.|..++. .+.+.+|+|||+ .+.++|.+
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYA--PWCghck~LaPey~kAA~~Lke~~s~i~LakVDat-----~~~~~~~~ 94 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYA--PWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT-----EESDLASK 94 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEc--hhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc-----hhhhhHhh
Confidence 356789999999999999999999999999 999999 999999999864 468999999998 78999999
Q ss_pred cCcc-CceEEEec------------cchHhhhhhhHHHHhhhhccc
Q psy3889 93 GCLT-PQLLWAFC------------VADSLNKTLFILIIFFSSIGI 125 (243)
Q Consensus 93 ~~V~-~PTi~lF~------------~~~~l~~~~f~~~~i~~~~g~ 125 (243)
|+|+ |||+++|+ ..++++. | +++++|.
T Consensus 95 y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~--w----l~kq~gP 134 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRSAQDYNGPREADGIVK--W----LKKQSGP 134 (493)
T ss_pred hcCCCCCeEEEEecCCcceeccCcccHHHHHH--H----HHhccCC
Confidence 9999 99999998 5788999 9 9988875
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.73 E-value=1.7e-17 Score=126.17 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=71.5
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.+++|+.+||++.+ +++++++|.||| |||++| |.|+++++.+.+ .+.+++|||+ +++++|++|+|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a--~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~-----~~~~~~~~~~i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYA--PWCGPCQALLPELRKAARALKG--KVKVGSVDCQ-----KYESLCQQANIR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECC-----chHHHHHHcCCC
Confidence 57899999999987 667899999999 999999 999999999853 6999999998 789999999999
Q ss_pred -CceEEEeccc-hHhhh
Q psy3889 97 -PQLLWAFCVA-DSLNK 111 (243)
Q Consensus 97 -~PTi~lF~~~-~~l~~ 111 (243)
+||+++|++. +....
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 9999999865 44434
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.72 E-value=2.6e-17 Score=123.45 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=68.4
Q ss_pred ceEcChhhHHHHhcc-CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 23 HVSLDTHNFDKILSK-FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 23 v~~L~~~nF~~~v~~-~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
|+.+|+++|++.+.+ +++++|.||+ |||++| |.|+++++.+.+ ++.++.||++ ++++++++|+|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~--~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~-----~~~~l~~~~~v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYA--PWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCD-----ENKELCKKYGVKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEES--TTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETT-----TSHHHHHHTTCSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeC--CCCCccccccceeccccccccc--ccccchhhhh-----ccchhhhccCCCC
Confidence 578999999999954 8999999999 999999 999999999865 8999999997 789999999999
Q ss_pred CceEEEec
Q psy3889 97 PQLLWAFC 104 (243)
Q Consensus 97 ~PTi~lF~ 104 (243)
+||+++|+
T Consensus 72 ~Pt~~~~~ 79 (103)
T PF00085_consen 72 VPTIIFFK 79 (103)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999998
No 12
>KOG0190|consensus
Probab=99.70 E-value=1.8e-17 Score=157.11 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=80.9
Q ss_pred hhhhhcCCCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHH
Q psy3889 14 LFDLVLSKGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNED 88 (243)
Q Consensus 14 ~~~~~~~~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~ 88 (243)
.+..+..++|..|...||++++ +.++.|||+||| |||||| |+|++||+.+++.++|+||++|++ .|.
T Consensus 359 iPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyA--PWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaT-----aNd- 430 (493)
T KOG0190|consen 359 IPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYA--PWCGHCKALAPIYEELAEKYKDDENVVIAKMDAT-----AND- 430 (493)
T ss_pred CCcccccCCeEEEeecCHHHHhhccccceEEEEcC--cccchhhhhhhHHHHHHHHhcCCCCcEEEEeccc-----ccc-
Confidence 4445566789999999999998 999999999999 999999 999999999999899999999997 554
Q ss_pred HHhhcCcc-CceEEEec--------------cchHhhhhhhHHHHhhhhc
Q psy3889 89 LAKRGCLT-PQLLWAFC--------------VADSLNKTLFILIIFFSSI 123 (243)
Q Consensus 89 l~~~~~V~-~PTi~lF~--------------~~~~l~~~~f~~~~i~~~~ 123 (243)
.....|+ ||||++|+ +.++|.. | +.+++
T Consensus 431 -~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~--f----i~~~a 473 (493)
T KOG0190|consen 431 -VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKK--F----IKKSA 473 (493)
T ss_pred -CccccccccceEEEecCCCCCCCcccCCCcchHHHHh--h----hccCC
Confidence 3355678 99999999 4567777 7 76654
No 13
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.69 E-value=9.1e-17 Score=121.53 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=67.2
Q ss_pred CCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
++|++|+++||++++.+ + ++|.||| |||++| |.|+++++.++ ..++.+++|||+ +++.++++|+|+
T Consensus 1 ~~v~~l~~~~f~~~~~~-~-~lv~f~a--~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~-----~~~~~~~~~~i~ 70 (101)
T cd02994 1 SNVVELTDSNWTLVLEG-E-WMIEFYA--PWCPACQQLQPEWEEFADWSD-DLGINVAKVDVT-----QEPGLSGRFFVT 70 (101)
T ss_pred CceEEcChhhHHHHhCC-C-EEEEEEC--CCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEcc-----CCHhHHHHcCCc
Confidence 36899999999998844 3 7899999 999999 99999999764 347999999997 788999999999
Q ss_pred -CceEEEeccch
Q psy3889 97 -PQLLWAFCVAD 107 (243)
Q Consensus 97 -~PTi~lF~~~~ 107 (243)
+||+++|++++
T Consensus 71 ~~Pt~~~~~~g~ 82 (101)
T cd02994 71 ALPTIYHAKDGV 82 (101)
T ss_pred ccCEEEEeCCCC
Confidence 99999998553
No 14
>KOG0910|consensus
Probab=99.69 E-value=7e-17 Score=130.96 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 20 SKGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
...+..++..+|++.| +++.+|+|+||| +||++| |..++++..+++ .+.+++||+| ++.+++.+|+
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A--~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD-----~~~ela~~Y~ 112 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHA--EWCGPCKMLGPILEELVSEYAG--KFKLYKVDTD-----EHPELAEDYE 112 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEec--CcCccHhHhhHHHHHHHHhhcC--eEEEEEEccc-----cccchHhhcc
Confidence 3456778899999976 999999999999 999999 999999999965 8999999998 8899999999
Q ss_pred cc-CceEEEeccchHhhh
Q psy3889 95 LT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 95 V~-~PTi~lF~~~~~l~~ 111 (243)
|. +||+++|++++..-+
T Consensus 113 I~avPtvlvfknGe~~d~ 130 (150)
T KOG0910|consen 113 ISAVPTVLVFKNGEKVDR 130 (150)
T ss_pred eeeeeEEEEEECCEEeee
Confidence 99 999999997776655
No 15
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.67 E-value=2.6e-16 Score=118.50 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
++++|++++|++.+.++ .++|.||+ |||++| |.|+++++.+++ .+++.+++|||+ .+..+|++|+|.
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~v~ 72 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFA--PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT-----QHRELCSEFQVR 72 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEEC--CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC-----CChhhHhhcCCC
Confidence 47899999999999655 59999999 999999 999999999864 457999999997 788999999999
Q ss_pred -CceEEEeccchH
Q psy3889 97 -PQLLWAFCVADS 108 (243)
Q Consensus 97 -~PTi~lF~~~~~ 108 (243)
+||+++|++...
T Consensus 73 ~~Pt~~~~~~g~~ 85 (102)
T cd03005 73 GYPTLLLFKDGEK 85 (102)
T ss_pred cCCEEEEEeCCCe
Confidence 999999985543
No 16
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.66 E-value=4e-16 Score=119.12 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=69.1
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
++++|+++||++.+ +++++++|.||+ |||++| |.|+++++.+.+ .+.++.|||+ ...++++|++|+|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a--~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~---~~~~~~~~~~~~i~ 73 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYA--PWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCD---EDKNKPLCGKYGVQ 73 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEEC--CCCHHHHhhChHHHHHHHHhcC--CceEEEEecC---ccccHHHHHHcCCC
Confidence 47899999999998 667789999999 999999 999999999853 6889999997 12378999999999
Q ss_pred -CceEEEeccch
Q psy3889 97 -PQLLWAFCVAD 107 (243)
Q Consensus 97 -~PTi~lF~~~~ 107 (243)
+||+++|++..
T Consensus 74 ~~Pt~~~~~~~~ 85 (109)
T cd03002 74 GFPTLKVFRPPK 85 (109)
T ss_pred cCCEEEEEeCCC
Confidence 99999998554
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.66 E-value=5.1e-16 Score=122.77 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=66.2
Q ss_pred CCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCC--c------HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh
Q psy3889 21 KGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAK--H------EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK 91 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~--c------p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~ 91 (243)
..++.||++||++.| ++..+++|.||+ +||++ | |++.++|.++-...++.|++||++ +++++|+
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a--~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d-----~~~~La~ 81 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEP--VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK-----KDAKVAK 81 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECC--CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC-----CCHHHHH
Confidence 468999999999998 555577777777 78865 9 777888888722347999999998 8999999
Q ss_pred hcCcc-CceEEEeccch
Q psy3889 92 RGCLT-PQLLWAFCVAD 107 (243)
Q Consensus 92 ~~~V~-~PTi~lF~~~~ 107 (243)
+|+|+ +||+++|++++
T Consensus 82 ~~~I~~iPTl~lfk~G~ 98 (120)
T cd03065 82 KLGLDEEDSIYVFKDDE 98 (120)
T ss_pred HcCCccccEEEEEECCE
Confidence 99999 99999999554
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.9e-15 Score=131.40 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=70.2
Q ss_pred cCCCceEcChhhHHHHh---ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh
Q psy3889 19 LSKGHVSLDTHNFDKIL---SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK 91 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v---~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~ 91 (243)
...+++++|+.||...| +...+|||.||+ |||++| |..++++.++++ .+.+++|||| .++.++.
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWa--p~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D-----~~p~vAa 91 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWA--PWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCD-----AEPMVAA 91 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecC--CCCchHHHHHHHHHHHHHHhCC--ceEEEEecCC-----cchhHHH
Confidence 33469999999999976 345599999999 999999 999999999976 8999999998 8999999
Q ss_pred hcCcc-CceEEEec
Q psy3889 92 RGCLT-PQLLWAFC 104 (243)
Q Consensus 92 ~~~V~-~PTi~lF~ 104 (243)
+|||+ +||+++|+
T Consensus 92 qfgiqsIPtV~af~ 105 (304)
T COG3118 92 QFGVQSIPTVYAFK 105 (304)
T ss_pred HhCcCcCCeEEEee
Confidence 99999 99999998
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=9.6e-16 Score=118.26 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=66.8
Q ss_pred CceEcChhhHHHHh---ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcc-cHHHHh-h
Q psy3889 22 GHVSLDTHNFDKIL---SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERD-NEDLAK-R 92 (243)
Q Consensus 22 ~v~~L~~~nF~~~v---~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~-n~~l~~-~ 92 (243)
.|++++.++|+.++ +.+++++|.||+ |||+|| |.|+++++.++ ..++.+++|||+ . +..+|. .
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a--~wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~d-----~~~~~~~~~~ 73 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYA--PWCPFCQAMEASYEELAEKLA-GSNVKVAKFNAD-----GEQREFAKEE 73 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEEC--CCCHHHHHHhHHHHHHHHHhc-cCCeEEEEEECC-----ccchhhHHhh
Confidence 58999999999998 357899999999 999999 99999999986 346999999997 4 577886 5
Q ss_pred cCcc-CceEEEecc
Q psy3889 93 GCLT-PQLLWAFCV 105 (243)
Q Consensus 93 ~~V~-~PTi~lF~~ 105 (243)
|+|+ +||+++|++
T Consensus 74 ~~v~~~Pti~~f~~ 87 (109)
T cd02993 74 LQLKSFPTILFFPK 87 (109)
T ss_pred cCCCcCCEEEEEcC
Confidence 9999 999999984
No 20
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=1.1e-15 Score=115.19 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=68.8
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
+|.+|++++|++.+ +++++++|.||+ |||++| |.|+++++.+++..++.+++|||+ .+ +++..+++.
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-----~~-~~~~~~~~~ 72 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYA--PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT-----AN-DVPSEFVVD 72 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEEC--CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc-----ch-hhhhhccCC
Confidence 47899999999988 566899999999 999999 999999999876568999999996 44 688999999
Q ss_pred -CceEEEeccch
Q psy3889 97 -PQLLWAFCVAD 107 (243)
Q Consensus 97 -~PTi~lF~~~~ 107 (243)
+||+++|+...
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 99999998544
No 21
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.63 E-value=1.1e-15 Score=119.31 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=69.2
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCC-CCcEEEEEecccCCCcccHHHHhhcCc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQ-PDFLVAEVGVKDYGERDNEDLAKRGCL 95 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~-~~v~vakVd~~d~~~~~n~~l~~~~~V 95 (243)
++++|++++|++.+ +..++|+|.||+ |||++| |.|+++++.++.. +.+.+++|||+ ...+.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a--~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~---~~~~~~~~~~~~i 76 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYA--SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA---DEENVALCRDFGV 76 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEEC--CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc---chhhHHHHHhCCC
Confidence 58999999999998 555799999999 999999 9999999998643 35899999995 2257899999999
Q ss_pred c-CceEEEeccc
Q psy3889 96 T-PQLLWAFCVA 106 (243)
Q Consensus 96 ~-~PTi~lF~~~ 106 (243)
+ +||+++|+..
T Consensus 77 ~~~Pt~~lf~~~ 88 (114)
T cd02992 77 TGYPTLRYFPPF 88 (114)
T ss_pred CCCCEEEEECCC
Confidence 9 9999999843
No 22
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.62 E-value=2.4e-15 Score=123.52 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCceEcChhhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 20 SKGHVSLDTHNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
...++++++++|++.+ +++++++|.||+ |||++| |.|+++++.+. ..++.+++||++ ++++++++|
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya--~wC~~Ck~l~p~l~~la~~~~-~~~v~f~~VDvd-----~~~~la~~~ 98 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFT--TWSPECVNFAPVFAELSLKYN-NNNLKFGKIDIG-----RFPNVAEKF 98 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHcc-cCCeEEEEEECC-----CCHHHHHHc
Confidence 4579999999999988 345799999999 999999 99999999985 346999999998 789999999
Q ss_pred Ccc-------CceEEEeccchHhhh
Q psy3889 94 CLT-------PQLLWAFCVADSLNK 111 (243)
Q Consensus 94 ~V~-------~PTi~lF~~~~~l~~ 111 (243)
+|+ +||+++|++++.+..
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEEEE
Confidence 984 799999998777766
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.61 E-value=2.9e-15 Score=112.90 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=67.8
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.|+++++.+|++.+ +++++++|.||+ |||++| |.|.++++.+.+ .+.++.+|++ ++.+++++|+|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a--~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~-----~~~~~~~~~~i~ 71 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYA--PWCGHCKNLAPEWKKAAKALKG--IVKVGAVDAD-----VHQSLAQQYGVR 71 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEEC--CCCHHHHHHhHHHHHHHHHhcC--CceEEEEECc-----chHHHHHHCCCC
Confidence 36899999999988 556679999999 999999 999999998854 6999999997 789999999999
Q ss_pred -CceEEEeccc
Q psy3889 97 -PQLLWAFCVA 106 (243)
Q Consensus 97 -~PTi~lF~~~ 106 (243)
+||+++|++.
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 9999999844
No 24
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.61 E-value=2.8e-15 Score=113.08 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=70.3
Q ss_pred ceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-C
Q psy3889 23 HVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-P 97 (243)
Q Consensus 23 v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~ 97 (243)
++.|++.+|+..+..+++++|.||+ |||++| |.+.++++.+.....+.++++||+ +..+..++++|+|+ +
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a--~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~---~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYA--PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT---KPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEEC--CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC---CCccHHHHHhCCCccc
Confidence 6789999999999888899999999 999999 999999999865457999999997 12389999999999 9
Q ss_pred ceEEEeccch
Q psy3889 98 QLLWAFCVAD 107 (243)
Q Consensus 98 PTi~lF~~~~ 107 (243)
||+++|++.+
T Consensus 77 Pt~~~~~~g~ 86 (104)
T cd02997 77 PTFKYFENGK 86 (104)
T ss_pred cEEEEEeCCC
Confidence 9999998543
No 25
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.61 E-value=2.7e-15 Score=117.45 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=66.2
Q ss_pred ChhhHHHHhc--cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 27 DTHNFDKILS--KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 27 ~~~nF~~~v~--~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
+.++|++.+. ++++|+|.||| +||++| |.++++|..+.+ .+.|++||++ ++++++.+|+|+ +||
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A--~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD-----~~~~la~~~~V~~iPT 71 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGR--DWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDID-----EVPDFNKMYELYDPPT 71 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEEC--CCChhHHHHHHHHHHHHHHccC--ceEEEEEECC-----CCHHHHHHcCCCCCCE
Confidence 3578999884 67899999999 999999 999999999853 5789999998 899999999999 999
Q ss_pred EEEeccchHhhh
Q psy3889 100 LWAFCVADSLNK 111 (243)
Q Consensus 100 i~lF~~~~~l~~ 111 (243)
+++|++++.+-.
T Consensus 72 f~~fk~G~~v~~ 83 (114)
T cd02954 72 VMFFFRNKHMKI 83 (114)
T ss_pred EEEEECCEEEEE
Confidence 999996655544
No 26
>PTZ00102 disulphide isomerase; Provisional
Probab=99.61 E-value=3.8e-15 Score=141.08 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=80.2
Q ss_pred CCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCc
Q psy3889 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCL 95 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V 95 (243)
..++.|+..+|+..+.+++.++|.||| |||+|| |.|+++++.+.. ..++.+++|||+ .+.++|++|+|
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a--~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~-----~~~~l~~~~~i 104 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYA--PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT-----EEMELAQEFGV 104 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEEC--CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC-----CCHHHHHhcCC
Confidence 578999999999999888999999999 999999 999999988853 457999999998 78999999999
Q ss_pred c-CceEEEec-----------cchHhhhhhhHHHHhhhhcc
Q psy3889 96 T-PQLLWAFC-----------VADSLNKTLFILIIFFSSIG 124 (243)
Q Consensus 96 ~-~PTi~lF~-----------~~~~l~~~~f~~~~i~~~~g 124 (243)
+ |||+++|+ +.++|+. | +++..+
T Consensus 105 ~~~Pt~~~~~~g~~~~y~g~~~~~~l~~--~----l~~~~~ 139 (477)
T PTZ00102 105 RGYPTIKFFNKGNPVNYSGGRTADGIVS--W----IKKLTG 139 (477)
T ss_pred CcccEEEEEECCceEEecCCCCHHHHHH--H----HHHhhC
Confidence 9 99999998 6777888 8 555443
No 27
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.61 E-value=3.2e-15 Score=112.58 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=69.5
Q ss_pred CceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcc-cHHHHhhcCc
Q psy3889 22 GHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERD-NEDLAKRGCL 95 (243)
Q Consensus 22 ~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~-n~~l~~~~~V 95 (243)
++++|++++|+..+ +++++++|.||+ |||++| |.|+.+++.++..+++.++++||+ . +.++|++|+|
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~v~f~a--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-----~~~~~~~~~~~i 73 (105)
T cd02998 1 NVVELTDSNFDKVVGDDKKDVLVEFYA--PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD-----EANKDLAKKYGV 73 (105)
T ss_pred CeEEcchhcHHHHhcCCCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC-----CcchhhHHhCCC
Confidence 36899999999988 455699999999 999999 999999999875567999999997 6 8999999999
Q ss_pred c-CceEEEeccc
Q psy3889 96 T-PQLLWAFCVA 106 (243)
Q Consensus 96 ~-~PTi~lF~~~ 106 (243)
+ +||+++|.+.
T Consensus 74 ~~~P~~~~~~~~ 85 (105)
T cd02998 74 SGFPTLKFFPKG 85 (105)
T ss_pred CCcCEEEEEeCC
Confidence 9 9999999844
No 28
>PRK09381 trxA thioredoxin; Provisional
Probab=99.61 E-value=4.5e-15 Score=113.81 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 20 SKGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
+..++++++.+|++.+ +.+++++|.||+ |||++| |.|+++++.+.+ ++.++.||++ .+..++++|+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~--~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~-----~~~~~~~~~~ 72 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWA--EWCGPCKMIAPILDEIADEYQG--KLTVAKLNID-----QNPGTAPKYG 72 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEEC--CCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECC-----CChhHHHhCC
Confidence 3578999999999865 778899999999 999999 999999999853 6999999997 7788999999
Q ss_pred cc-CceEEEeccch
Q psy3889 95 LT-PQLLWAFCVAD 107 (243)
Q Consensus 95 V~-~PTi~lF~~~~ 107 (243)
|. +||+.+|+++.
T Consensus 73 v~~~Pt~~~~~~G~ 86 (109)
T PRK09381 73 IRGIPTLLLFKNGE 86 (109)
T ss_pred CCcCCEEEEEeCCe
Confidence 99 99999998543
No 29
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.60 E-value=3.6e-15 Score=115.65 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=65.4
Q ss_pred eEcChhhHHHHh---ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 24 VSLDTHNFDKIL---SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 24 ~~L~~~nF~~~v---~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
..++..+|++.+ +.+++++|.||| |||++| |.|+++++.+.+ .++.+++|||+ .++.++++|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a--~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d-----~~~~l~~~~~V~ 78 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITS--DWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAG-----HERRLARKLGAH 78 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEEC--CccHhHHHhhHHHHHHHHHHHh-cCceEEEEecc-----ccHHHHHHcCCc
Confidence 356889998754 367899999999 999999 999999999963 36999999997 788999999999
Q ss_pred -CceEEEeccc
Q psy3889 97 -PQLLWAFCVA 106 (243)
Q Consensus 97 -~PTi~lF~~~ 106 (243)
+||+++|+++
T Consensus 79 ~~Pt~~i~~~g 89 (111)
T cd02963 79 SVPAIVGIING 89 (111)
T ss_pred cCCEEEEEECC
Confidence 9999999844
No 30
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.60 E-value=5e-15 Score=110.95 Aligned_cols=79 Identities=25% Similarity=0.345 Sum_probs=70.3
Q ss_pred cChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 26 LDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 26 L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
|++.+|++.+.++++++|.||+ |||++| |.|+++++.+.+.+++.++.+||+ ++..++++|+|+ +||+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~--~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYA--PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-----AEKDLASRFGVSGFPTI 73 (102)
T ss_pred CchhhHHHHhccCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-----chHHHHHhCCCCcCCEE
Confidence 6789999999889999999999 999999 999999999976557999999997 789999999999 9999
Q ss_pred EEeccchHhhh
Q psy3889 101 WAFCVADSLNK 111 (243)
Q Consensus 101 ~lF~~~~~l~~ 111 (243)
.+|++.+....
T Consensus 74 ~~~~~~~~~~~ 84 (102)
T TIGR01126 74 KFFPKGKKPVD 84 (102)
T ss_pred EEecCCCccee
Confidence 99985444444
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.56 E-value=1.4e-14 Score=108.34 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=61.7
Q ss_pred hhHHHHh-cc-CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 29 HNFDKIL-SK-FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 29 ~nF~~~v-~~-~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++|++.| +. +++++|.||+ |||++| |.|++++..+.+ .+.+++||++ .+.+++++|+|. +||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a--~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~-----~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWA--PRSPPSKELLPLLERLAEEYQG--QFVLAKVNCD-----AQPQIAQQFGVQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEEC--CCChHHHHHHHHHHHHHHHhCC--cEEEEEEecc-----CCHHHHHHcCCCCCCEEE
Confidence 4788888 34 6799999999 999999 999999999854 6889999998 789999999999 99999
Q ss_pred Eeccch
Q psy3889 102 AFCVAD 107 (243)
Q Consensus 102 lF~~~~ 107 (243)
+|+++.
T Consensus 72 ~~~~g~ 77 (96)
T cd02956 72 LFAAGQ 77 (96)
T ss_pred EEeCCE
Confidence 998443
No 32
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.55 E-value=1.7e-14 Score=110.40 Aligned_cols=78 Identities=10% Similarity=0.227 Sum_probs=64.1
Q ss_pred ChhhHHHHhc--cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 27 DTHNFDKILS--KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 27 ~~~nF~~~v~--~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
|.++|++.+. ++++|+|.||| |||++| |.|+++++.+ +++.+++||+++ +....+++++|+|+ +||
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a--~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~--~~~~~~l~~~~~V~~~Pt 74 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFAL--KHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDE--NDSTMELCRREKIIEVPH 74 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEEC--CCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCC--ChHHHHHHHHcCCCcCCE
Confidence 4689999983 38999999999 999999 9999999988 379999999971 11225899999999 999
Q ss_pred EEEeccchHhhh
Q psy3889 100 LWAFCVADSLNK 111 (243)
Q Consensus 100 i~lF~~~~~l~~ 111 (243)
+++|+++..+..
T Consensus 75 ~~~~~~G~~v~~ 86 (103)
T cd02985 75 FLFYKDGEKIHE 86 (103)
T ss_pred EEEEeCCeEEEE
Confidence 999986544433
No 33
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.55 E-value=1.8e-14 Score=111.85 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCceEcChhhHHHHhccC---CeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 21 KGHVSLDTHNFDKILSKF---HTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~---k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
+.+.++++++|.+.|... ++|+|.||+ |||++| |.|+++|..+. ++.|++||++ ++ +++++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a--~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~-----~~-~l~~~~ 72 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYE--PGFPRCKILDSHLEELAAKYP---ETKFVKINAE-----KA-FLVNYL 72 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeC--CCCCcHHHHHHHHHHHHHHCC---CcEEEEEEch-----hh-HHHHhc
Confidence 457889999999988433 899999999 999999 99999999874 5889999997 56 999999
Q ss_pred Ccc-CceEEEeccchHhhh
Q psy3889 94 CLT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 94 ~V~-~PTi~lF~~~~~l~~ 111 (243)
+|+ +||+++|++++.+-.
T Consensus 73 ~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 73 DIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred CCCcCCEEEEEECCEEEEE
Confidence 999 999999996655444
No 34
>PHA02278 thioredoxin-like protein
Probab=99.55 E-value=1.7e-14 Score=111.07 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=64.8
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
+..+|++.++++++|+|.||| ||||+| |.++++++.+. .++.+++||++. ++..+++++++|+|. +||++
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A--~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~-~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQ--DNCGKCEILKSVIPMFQESGD--IKKPILTLNLDA-EDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEEC--CCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCc-cccccHHHHHHCCCccccEEE
Confidence 457899999889999999999 999999 99999988753 256789999961 101137899999999 99999
Q ss_pred EeccchHhhh
Q psy3889 102 AFCVADSLNK 111 (243)
Q Consensus 102 lF~~~~~l~~ 111 (243)
+|++++.+-+
T Consensus 78 ~fk~G~~v~~ 87 (103)
T PHA02278 78 GYKDGQLVKK 87 (103)
T ss_pred EEECCEEEEE
Confidence 9997655544
No 35
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=3.1e-14 Score=108.60 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=64.2
Q ss_pred cChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 26 LDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 26 L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
-+.++|+.+++++++|+|.||| |||++| |.|+++++.++ ++.+.+++||++ +.+++++|+|+ +||+
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a--~wC~~Ck~~~p~l~~~~~~~~-~~~~~~~~vd~d------~~~~~~~~~v~~~Pt~ 75 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQ--EWCGPCKAVVSLFKKIKNELG-DDLLHFATAEAD------TIDTLKRYRGKCEPTF 75 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEEC--CcCHhHHHHhHHHHHHHHHcC-CCcEEEEEEeCC------CHHHHHHcCCCcCcEE
Confidence 4789999999889999999999 999999 99999999885 345889999985 46789999999 9999
Q ss_pred EEeccch
Q psy3889 101 WAFCVAD 107 (243)
Q Consensus 101 ~lF~~~~ 107 (243)
++|++++
T Consensus 76 ~~~~~g~ 82 (102)
T cd02948 76 LFYKNGE 82 (102)
T ss_pred EEEECCE
Confidence 9998543
No 36
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.54 E-value=2e-14 Score=109.68 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=59.2
Q ss_pred hhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 29 HNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 29 ~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
.+|.+++ .++++|+|.||| |||++| |.|+++++.+. ++.+++||+++ .+++++++|+|+ +||++
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~----~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYA--SWCPFSASFRPHFNALSSMFP---QIRHLAIEESS----IKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc---cCceEEEECCC----CCHHHHHhcCCeecCEEE
Confidence 4566665 578999999999 999999 99999999884 47889998851 478999999999 99999
Q ss_pred Eeccc
Q psy3889 102 AFCVA 106 (243)
Q Consensus 102 lF~~~ 106 (243)
+|+..
T Consensus 78 lf~~g 82 (100)
T cd02999 78 LFNST 82 (100)
T ss_pred EEcCC
Confidence 99855
No 37
>PRK10996 thioredoxin 2; Provisional
Probab=99.54 E-value=3.5e-14 Score=114.59 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=71.8
Q ss_pred cCCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 19 LSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
....+++++..+|+++++.+++|+|.||+ |||++| |.|.++++.+.+ ++.+++||++ .+++++++|+
T Consensus 33 ~~~~~i~~~~~~~~~~i~~~k~vvv~F~a--~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~-----~~~~l~~~~~ 103 (139)
T PRK10996 33 FDGEVINATGETLDKLLQDDLPVVIDFWA--PWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTE-----AERELSARFR 103 (139)
T ss_pred CCCCCEEcCHHHHHHHHhCCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCC-----CCHHHHHhcC
Confidence 44568889999999999889999999999 999999 899999988753 6999999997 7899999999
Q ss_pred cc-CceEEEeccchH
Q psy3889 95 LT-PQLLWAFCVADS 108 (243)
Q Consensus 95 V~-~PTi~lF~~~~~ 108 (243)
|+ +||+++|++++.
T Consensus 104 V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 104 IRSIPTIMIFKNGQV 118 (139)
T ss_pred CCccCEEEEEECCEE
Confidence 99 999999985443
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.53 E-value=3.9e-14 Score=104.70 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=68.4
Q ss_pred eEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cc
Q psy3889 24 VSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQ 98 (243)
Q Consensus 24 ~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~P 98 (243)
++|++.+|.+.+.++++++|.||+ |||++| |.|+++++.++..+++.++.|||+ .+..++++|+|+ +|
T Consensus 1 ~~l~~~~~~~~i~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~i~~~P 73 (101)
T cd02961 1 VELTDDNFDELVKDSKDVLVEFYA--PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT-----ANNDLCSEYGVRGYP 73 (101)
T ss_pred CcccHHHHHHHHhCCCcEEEEEEC--CCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc-----chHHHHHhCCCCCCC
Confidence 368899999999777799999999 999999 999999998854568999999997 689999999999 99
Q ss_pred eEEEeccc
Q psy3889 99 LLWAFCVA 106 (243)
Q Consensus 99 Ti~lF~~~ 106 (243)
|+++|++.
T Consensus 74 t~~~~~~~ 81 (101)
T cd02961 74 TIKLFPNG 81 (101)
T ss_pred EEEEEcCC
Confidence 99999854
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.52 E-value=4.3e-14 Score=107.84 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=62.7
Q ss_pred ceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 23 HVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 23 v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
+.+++ ++|+++. +++.++|.||+ |||++| |.|+++++.++. ..++.++++||+ .+++++++|+|.
T Consensus 2 ~~~~~-~~~~~~~-~~~~vlv~f~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~I~~ 72 (104)
T cd03000 2 VLDLD-DSFKDVR-KEDIWLVDFYA--PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT-----AYSSIASEFGVRG 72 (104)
T ss_pred eeech-hhhhhhc-cCCeEEEEEEC--CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc-----cCHhHHhhcCCcc
Confidence 34553 8999864 56799999999 999999 999999999853 246999999997 678999999999
Q ss_pred CceEEEec
Q psy3889 97 PQLLWAFC 104 (243)
Q Consensus 97 ~PTi~lF~ 104 (243)
+||+++|.
T Consensus 73 ~Pt~~l~~ 80 (104)
T cd03000 73 YPTIKLLK 80 (104)
T ss_pred ccEEEEEc
Confidence 99999996
No 40
>KOG4277|consensus
Probab=99.52 E-value=6.5e-15 Score=131.14 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=69.2
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.|.+|+ +.|.+.- ....++|+||| |||+|| |+|++++.+++. ...+.++++||+ ..+.++.+|+|+
T Consensus 29 ~VeDLd-dkFkdnk-dddiW~VdFYA--PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT-----~f~aiAnefgiq 99 (468)
T KOG4277|consen 29 AVEDLD-DKFKDNK-DDDIWFVDFYA--PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT-----RFPAIANEFGIQ 99 (468)
T ss_pred hhhhhh-HHhhhcc-cCCeEEEEeec--hhhhhcccccchhHHhCcchhhcCCceeecccccc-----cchhhHhhhccC
Confidence 466674 5676644 44589999999 999999 999999999863 456999999998 789999999999
Q ss_pred -CceEEEec-----------cchHhhhhhh
Q psy3889 97 -PQLLWAFC-----------VADSLNKTLF 114 (243)
Q Consensus 97 -~PTi~lF~-----------~~~~l~~~~f 114 (243)
||||++|+ ..++++. |
T Consensus 100 GYPTIk~~kgd~a~dYRG~R~Kd~iie--F 127 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGGREKDAIIE--F 127 (468)
T ss_pred CCceEEEecCCeeeecCCCccHHHHHH--H
Confidence 99999998 5678888 7
No 41
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.52 E-value=4.4e-14 Score=134.18 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=67.8
Q ss_pred cCCCceEcChhhHHHHhc---cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCccc-HHH-
Q psy3889 19 LSKGHVSLDTHNFDKILS---KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDN-EDL- 89 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v~---~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n-~~l- 89 (243)
..+.|++|+.+||+++|. .+++|||.||| |||++| |.|+++|+.+++ .++.|++|||+ .+ ..+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA--pWC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD-----~~~~~~~ 420 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYA--PWCPFCQAMEASYLELAEKLAG-SGVKVAKFRAD-----GDQKEFA 420 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEEC--CCChHHHHHHHHHHHHHHHhcc-CCcEEEEEECC-----CCccHHH
Confidence 456899999999999984 78899999999 999999 999999999864 35899999997 32 344
Q ss_pred HhhcCcc-CceEEEecc
Q psy3889 90 AKRGCLT-PQLLWAFCV 105 (243)
Q Consensus 90 ~~~~~V~-~PTi~lF~~ 105 (243)
+++|+|+ ||||++|++
T Consensus 421 ~~~~~I~~~PTii~Fk~ 437 (463)
T TIGR00424 421 KQELQLGSFPTILFFPK 437 (463)
T ss_pred HHHcCCCccceEEEEEC
Confidence 4789999 999999984
No 42
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.52 E-value=5.8e-14 Score=131.65 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=70.1
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.|++|+..||++++.+++.++|.||| |||++| |.|+++|+.+.. .+++.+++|||+ .+.++|++|+|.
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a--~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i~ 74 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYA--PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT-----EEKDLAQKYGVS 74 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEEC--CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC-----CcHHHHHhCCCc
Confidence 58899999999999888999999999 999999 999999998853 356999999998 789999999999
Q ss_pred -CceEEEec
Q psy3889 97 -PQLLWAFC 104 (243)
Q Consensus 97 -~PTi~lF~ 104 (243)
|||+++|+
T Consensus 75 ~~Pt~~~~~ 83 (462)
T TIGR01130 75 GYPTLKIFR 83 (462)
T ss_pred cccEEEEEe
Confidence 99999998
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.51 E-value=4.5e-14 Score=110.04 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCceEcChhhHHHHhccCCeEEEEEEecCCC--CCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPY--GAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pW--C~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
.+.-++|..||++.+..+..++|.||+ +| |++| |.|+++|+.+.+ .+.|++||++ +++.++.+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid-----~~~~la~~f~ 80 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAG--DPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRA-----DEQALAARFG 80 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecC--CcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECC-----CCHHHHHHcC
Confidence 467789999999999888999999999 75 9999 999999999853 6889999998 7889999999
Q ss_pred cc-CceEEEeccchHhhh
Q psy3889 95 LT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 95 V~-~PTi~lF~~~~~l~~ 111 (243)
|+ +||+++|++++.+-.
T Consensus 81 V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 81 VLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCcCCEEEEEECCEEEEE
Confidence 99 999999997654443
No 44
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.51 E-value=1e-13 Score=108.21 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=70.9
Q ss_pred CceEcCh-hhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLDT-HNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~~-~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.+.+++. .+|.+.+.+++.|+|.||+ |||++| |.++++++.+. ++.+++||++ ++++++++|+|.
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a--~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~-----~~~~l~~~~~v~ 74 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYH--PEFFRCKIMDKHLEILAKKHL---ETKFIKVNAE-----KAPFLVEKLNIK 74 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEEC--CCCccHHHHHHHHHHHHHHcC---CCEEEEEEcc-----cCHHHHHHCCCc
Confidence 4677777 9999999888999999999 999999 99999998873 5899999998 889999999999
Q ss_pred -CceEEEeccchHhhh
Q psy3889 97 -PQLLWAFCVADSLNK 111 (243)
Q Consensus 97 -~PTi~lF~~~~~l~~ 111 (243)
+||+++|++++.+-.
T Consensus 75 ~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 75 VLPTVILFKNGKTVDR 90 (113)
T ss_pred cCCEEEEEECCEEEEE
Confidence 999999997665544
No 45
>PLN02309 5'-adenylylsulfate reductase
Probab=99.49 E-value=9.1e-14 Score=131.94 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=69.2
Q ss_pred cCCCceEcChhhHHHHh---ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh
Q psy3889 19 LSKGHVSLDTHNFDKIL---SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK 91 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v---~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~ 91 (243)
....|++|+.+||++++ +.++.+||.||| |||++| |.|+++|+.+.+ .++.|++|||+ ..+.+++.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA--pWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d----~~~~~la~ 415 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYA--PWCPFCQAMEASYEELAEKLAG-SGVKVAKFRAD----GDQKEFAK 415 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEEC--CCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECC----CcchHHHH
Confidence 44689999999999987 578899999999 999999 999999999864 46999999996 14578886
Q ss_pred -hcCcc-CceEEEec
Q psy3889 92 -RGCLT-PQLLWAFC 104 (243)
Q Consensus 92 -~~~V~-~PTi~lF~ 104 (243)
+|+|+ ||||++|+
T Consensus 416 ~~~~I~~~PTil~f~ 430 (457)
T PLN02309 416 QELQLGSFPTILLFP 430 (457)
T ss_pred hhCCCceeeEEEEEe
Confidence 69999 99999998
No 46
>PTZ00102 disulphide isomerase; Provisional
Probab=99.47 E-value=1e-13 Score=131.27 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 20 SKGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
.+.+..|+.+||++.| +++++|+|.||| |||+|| |.|+++|+.++..+.+.++++|++ .|..++++|+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a--~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~-----~~~~~~~~~~ 428 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYA--PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT-----ANETPLEEFS 428 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEEC--CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC-----CCccchhcCC
Confidence 3468999999999986 888999999999 999999 999999999876567999999997 7888899999
Q ss_pred cc-CceEEEec
Q psy3889 95 LT-PQLLWAFC 104 (243)
Q Consensus 95 V~-~PTi~lF~ 104 (243)
|+ +||+++|+
T Consensus 429 v~~~Pt~~~~~ 439 (477)
T PTZ00102 429 WSAFPTILFVK 439 (477)
T ss_pred CcccCeEEEEE
Confidence 99 99999998
No 47
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.46 E-value=4.1e-13 Score=104.92 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=62.5
Q ss_pred hhhHHHHhc--cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 28 THNFDKILS--KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 28 ~~nF~~~v~--~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
.+.|++.+. +++.|+|.|+| +||++| |.++++|+.+++ .+.|++||+| +++++++.|+|+ .||+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a--~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVD-----ev~dva~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGR--DEDAVCLQLDDILSKTSHDLSK--MASIYLVDVD-----KVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeC--CCChhHHHHHHHHHHHHHHccC--ceEEEEEecc-----ccHHHHHhcCceeCcEE
Confidence 467888773 58999999999 999999 999999999853 3999999998 899999999999 9999
Q ss_pred EEeccch
Q psy3889 101 WAFCVAD 107 (243)
Q Consensus 101 ~lF~~~~ 107 (243)
++|++..
T Consensus 73 vffkngk 79 (114)
T cd02986 73 IFFFNGQ 79 (114)
T ss_pred EEEECCc
Confidence 9998443
No 48
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=3.5e-13 Score=109.41 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred ChhhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 27 DTHNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 27 ~~~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
+...|++.+ ..+++|+|.||| +||++| |.++++|+.+.+ .+.|++||+| ++++++.+|+|+ .||
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A--~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVD-----e~~dla~~y~I~~~~t 80 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGH--DWDETCMQMDEVLASVAETIKN--FAVIYLVDIT-----EVPDFNTMYELYDPCT 80 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEEC--CCChhHHHHHHHHHHHHHHcCC--ceEEEEEECC-----CCHHHHHHcCccCCCc
Confidence 468999988 467899999999 999999 999999999853 5888999998 899999999999 766
Q ss_pred EE-EeccchHhhh
Q psy3889 100 LW-AFCVADSLNK 111 (243)
Q Consensus 100 i~-lF~~~~~l~~ 111 (243)
++ +|++.+-.+.
T Consensus 81 ~~~ffk~g~~~vd 93 (142)
T PLN00410 81 VMFFFRNKHIMID 93 (142)
T ss_pred EEEEEECCeEEEE
Confidence 55 8887653443
No 49
>KOG0907|consensus
Probab=99.46 E-value=4.1e-13 Score=103.96 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=59.9
Q ss_pred ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEeccchHhh
Q psy3889 36 SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFCVADSLN 110 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~~~~~l~ 110 (243)
.+++.++|+||| +|||+| |.|+++|..+. ++.|.+||+| +++++++.|+|+ .||+.+|++++.+.
T Consensus 19 ~~~kliVvdF~a--~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvd-----e~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 19 AGDKLVVVDFYA--TWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVD-----ELEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred CCCCeEEEEEEC--CCCcchhhhhhHHHHHHHHCC---CCEEEEEecc-----cCHhHHHhcCceEeeEEEEEECCEEEE
Confidence 456999999999 999999 99999999984 4999999997 499999999999 99999999777777
Q ss_pred h
Q psy3889 111 K 111 (243)
Q Consensus 111 ~ 111 (243)
+
T Consensus 89 ~ 89 (106)
T KOG0907|consen 89 E 89 (106)
T ss_pred E
Confidence 7
No 50
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.45 E-value=4.6e-13 Score=99.75 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=63.0
Q ss_pred cChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 26 LDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 26 L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
++.++|.+.+ +.++.++|.||+ |||++| |.|+++++.+. +++.++.||++ .+..++++|+|. +||
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~--~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~-----~~~~~~~~~~v~~~P~ 71 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWA--PWCGPCKMIAPILEELAKEYE--GKVKFVKLNVD-----ENPDIAAKYGIRSIPT 71 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEEC--CCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECC-----CCHHHHHHcCCCcCCE
Confidence 4678999988 446699999999 999999 89999998874 36999999997 788999999999 999
Q ss_pred EEEeccc
Q psy3889 100 LWAFCVA 106 (243)
Q Consensus 100 i~lF~~~ 106 (243)
+++|++.
T Consensus 72 ~~~~~~g 78 (101)
T TIGR01068 72 LLLFKNG 78 (101)
T ss_pred EEEEeCC
Confidence 9999843
No 51
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.45 E-value=3.8e-13 Score=100.47 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=63.2
Q ss_pred ChhhHHHHhccC--CeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 27 DTHNFDKILSKF--HTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 27 ~~~nF~~~v~~~--k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
+.++|++.+... +.|+|.||+ |||++| |.|++++..+ .+++.+++||++ ++.+++++|+|+ +||
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~--~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~-----~~~~~~~~~~i~~~Pt 71 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWA--PWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAE-----ELPEISEKFEITAVPT 71 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEEC--CCCHHHHHHhHHHHHHHHHh--CCceEEEEEccc-----cCHHHHHhcCCccccE
Confidence 467899998544 999999999 999999 8999999886 358999999997 789999999999 999
Q ss_pred EEEeccch
Q psy3889 100 LWAFCVAD 107 (243)
Q Consensus 100 i~lF~~~~ 107 (243)
+++|+++.
T Consensus 72 ~~~~~~g~ 79 (97)
T cd02984 72 FVFFRNGT 79 (97)
T ss_pred EEEEECCE
Confidence 99998543
No 52
>KOG0912|consensus
Probab=99.43 E-value=1.6e-13 Score=122.23 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=72.4
Q ss_pred cChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHcc---CCCCcEEEEEecccCCCcccHHHHhhcCcc-C
Q psy3889 26 LDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSK---HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-P 97 (243)
Q Consensus 26 L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~---~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~ 97 (243)
|+..|++.+++....|+|.||| .||+.. |+|++.|..++ .+..++.++|||+ .+.+|+.+|.|. |
T Consensus 1 lt~~N~~~il~s~elvfv~FyA--dWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd-----~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYA--DWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD-----KEDDIADKYHINKY 73 (375)
T ss_pred CccccHHHhhccceEEeeeeeh--hhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc-----hhhHHhhhhccccC
Confidence 4678999999999999999999 999987 99999999874 2467999999998 889999999999 9
Q ss_pred ceEEEec-------------cchHhhhhhh
Q psy3889 98 QLLWAFC-------------VADSLNKTLF 114 (243)
Q Consensus 98 PTi~lF~-------------~~~~l~~~~f 114 (243)
||+++|+ +.+.|.. |
T Consensus 74 PTlKvfrnG~~~~rEYRg~RsVeaL~e--f 101 (375)
T KOG0912|consen 74 PTLKVFRNGEMMKREYRGQRSVEALIE--F 101 (375)
T ss_pred ceeeeeeccchhhhhhccchhHHHHHH--H
Confidence 9999998 6788888 8
No 53
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.39 E-value=1.3e-12 Score=109.58 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCceEcCh-hhHHHHhcc-C--CeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh
Q psy3889 20 SKGHVSLDT-HNFDKILSK-F--HTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK 91 (243)
Q Consensus 20 ~~~v~~L~~-~nF~~~v~~-~--k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~ 91 (243)
...+++++. .+|.+.|.. + .+|+|.||+ |||++| |.++++|..+. .+.|++||++ .+ +++.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya--~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d-----~~-~l~~ 129 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYE--PGIPGCAALNSSLLCLAAEYP---AVKFCKIRAS-----AT-GASD 129 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEEC--CCCchHHHHHHHHHHHHHHCC---CeEEEEEecc-----ch-hhHH
Confidence 356889999 999999843 3 499999999 999999 99999998873 6999999997 45 8999
Q ss_pred hcCcc-CceEEEeccchHhhh
Q psy3889 92 RGCLT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 92 ~~~V~-~PTi~lF~~~~~l~~ 111 (243)
+|+|. +||+++|++++.+-.
T Consensus 130 ~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 130 EFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred hCCCCCCCEEEEEECCEEEEE
Confidence 99999 999999996654444
No 54
>PTZ00051 thioredoxin; Provisional
Probab=99.39 E-value=1.5e-12 Score=97.53 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=64.5
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
+.++|+++++.++.++|.||+ |||++| |.|+++++.+. ++.++.||++ ++.+++++|+|. +||++
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~--~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~-----~~~~~~~~~~v~~~Pt~~ 76 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYA--EWCGPCKRIAPFYEECSKEYT---KMVFVKVDVD-----ELSEVAEKENITSMPTFK 76 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEEC--CCCHHHHHHhHHHHHHHHHcC---CcEEEEEECc-----chHHHHHHCCCceeeEEE
Confidence 357899988888999999999 999999 88999988763 6899999997 789999999999 99999
Q ss_pred EeccchHhhh
Q psy3889 102 AFCVADSLNK 111 (243)
Q Consensus 102 lF~~~~~l~~ 111 (243)
+|+++..+..
T Consensus 77 ~~~~g~~~~~ 86 (98)
T PTZ00051 77 VFKNGSVVDT 86 (98)
T ss_pred EEeCCeEEEE
Confidence 9985544333
No 55
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.36 E-value=1.9e-12 Score=98.44 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=62.4
Q ss_pred hhhHHHHhccCCeEEEEEEecCCCCCCc----HHH---HHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 28 THNFDKILSKFHTTLVKFDIAYPYGAKH----EAF---LEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 28 ~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~---~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
++.|++.+.++++++|.||+ |||++| |.+ .++++.+.+ ++.++.||++. ++..+.+++++|+|+ +||
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a--~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~-~~~~~~~~~~~~~i~~~Pt 75 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTA--DWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTK-NDPEITALLKRFGVFGPPT 75 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEc--chhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCC-CCHHHHHHHHHcCCCCCCE
Confidence 36788989889999999999 999999 555 577777753 79999999862 122268999999999 999
Q ss_pred EEEec--cchHhhh
Q psy3889 100 LWAFC--VADSLNK 111 (243)
Q Consensus 100 i~lF~--~~~~l~~ 111 (243)
+++|. +++.+..
T Consensus 76 i~~~~~~~g~~~~~ 89 (104)
T cd02953 76 YLFYGPGGEPEPLR 89 (104)
T ss_pred EEEECCCCCCCCcc
Confidence 99997 3444443
No 56
>KOG1731|consensus
Probab=99.32 E-value=6.6e-13 Score=126.59 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 21 KGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
.++++|+.+||+..| ++.+..||+||+ +||||| |.|+++|+.+.. .+-|.++.|||- +..|..+|+.|+
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~--swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---~~~N~~lCRef~ 113 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYN--SWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---DEENVKLCREFS 113 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHH--hhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---chhhhhhHhhcC
Confidence 469999999999999 556699999999 999999 999999999854 456899999997 457999999999
Q ss_pred cc-CceEEEec
Q psy3889 95 LT-PQLLWAFC 104 (243)
Q Consensus 95 V~-~PTi~lF~ 104 (243)
|+ |||+++|+
T Consensus 114 V~~~Ptlryf~ 124 (606)
T KOG1731|consen 114 VSGYPTLRYFP 124 (606)
T ss_pred CCCCceeeecC
Confidence 99 99999998
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.31 E-value=8.4e-12 Score=101.14 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=59.6
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
....|+..+..+++++|.||| +||++| |.|.++++.+.. .+.|+.||++ ...+.+++.+|+|. +||++
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A--~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd---~~~~~~~~~~~~V~~iPt~v 81 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYA--DWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVD---NPKWLPEIDRYRVDGIPHFV 81 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEEC--CcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcC---CcccHHHHHHcCCCCCCEEE
Confidence 356788888889999999999 999999 999999998853 5677778775 12457899999999 99999
Q ss_pred Eec
Q psy3889 102 AFC 104 (243)
Q Consensus 102 lF~ 104 (243)
+|.
T Consensus 82 ~~~ 84 (142)
T cd02950 82 FLD 84 (142)
T ss_pred EEC
Confidence 995
No 58
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.29 E-value=1.8e-11 Score=95.39 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=56.9
Q ss_pred hhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEe
Q psy3889 29 HNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAF 103 (243)
Q Consensus 29 ~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF 103 (243)
.+|.+-+.....++|.||+ |||++| |.+++++..+ +.+.+..||++ ++++++++|+|. +||+++|
T Consensus 13 ~~~~~~l~~~~~vvv~f~a--~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d-----~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSK--EGCQYCEVTKQLLEELSELS---DKLKLEIYDFD-----EDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHHHHHhCCCeEEEEEeCC--CCCCChHHHHHHHHHHHHhc---CceEEEEEeCC-----cCHHHHHHcCCCcCCEEEEE
Confidence 3466656567789999999 999999 8888888764 36899999997 789999999999 9999999
Q ss_pred ccc
Q psy3889 104 CVA 106 (243)
Q Consensus 104 ~~~ 106 (243)
++.
T Consensus 83 ~~g 85 (113)
T cd02975 83 QDG 85 (113)
T ss_pred eCC
Confidence 743
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.28 E-value=7.1e-12 Score=117.50 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 20 SKGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
.+.+..|+..||++.+ +++++|+|.||+ |||++| |.|+++++.+++ .+.+.++++||+ .| ++.. +
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~-----~n-~~~~-~ 415 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYA--PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT-----AN-DVPP-F 415 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEEC--CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC-----CC-ccCC-C
Confidence 3468899999999988 778999999999 999999 999999999975 347999999996 44 3444 9
Q ss_pred Ccc-CceEEEecc
Q psy3889 94 CLT-PQLLWAFCV 105 (243)
Q Consensus 94 ~V~-~PTi~lF~~ 105 (243)
+|+ +||+.+|+.
T Consensus 416 ~i~~~Pt~~~~~~ 428 (462)
T TIGR01130 416 EVEGFPTIKFVPA 428 (462)
T ss_pred CccccCEEEEEeC
Confidence 999 999999983
No 60
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.26 E-value=2.6e-11 Score=87.57 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=60.0
Q ss_pred hhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEe
Q psy3889 29 HNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAF 103 (243)
Q Consensus 29 ~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF 103 (243)
++|++.+..+++++|.||+ |||++| |.++++++. .+++.++.+|++ .+.+++++|++. +||+++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~--~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~-----~~~~~~~~~~v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWA--PWCGPCKAIAPVLEELAEE---YPKVKFVKVDVD-----ENPELAEEYGVRSIPTFLFF 70 (93)
T ss_pred CchHHHHhcCCcEEEEEEC--CCChhHHHhhHHHHHHHHH---CCCceEEEEECC-----CChhHHHhcCcccccEEEEE
Confidence 3688888777999999999 999999 888888776 358999999997 688999999999 9999999
Q ss_pred ccch
Q psy3889 104 CVAD 107 (243)
Q Consensus 104 ~~~~ 107 (243)
+...
T Consensus 71 ~~g~ 74 (93)
T cd02947 71 KNGK 74 (93)
T ss_pred ECCE
Confidence 8544
No 61
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.26 E-value=2.6e-11 Score=91.34 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=58.3
Q ss_pred HHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 31 FDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 31 F~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
.+..+ +.+++|+|.||+ |||++| |.++++++.+.+ ++.+++||++ .+++++.+++|. +||+.+|+
T Consensus 5 ~~~~~~~~~~~vlv~f~a--~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d-----~~~~l~~~~~v~~vPt~~i~~ 75 (97)
T cd02949 5 LRKLYHESDRLILVLYTS--PTCGPCRTLKPILNKVIDEFDG--AVHFVEIDID-----EDQEIAEAAGIMGTPTVQFFK 75 (97)
T ss_pred HHHHHHhCCCeEEEEEEC--CCChhHHHHHHHHHHHHHHhCC--ceEEEEEECC-----CCHHHHHHCCCeeccEEEEEE
Confidence 34555 778899999999 999999 899999888753 6999999997 788999999999 99999998
Q ss_pred cc
Q psy3889 105 VA 106 (243)
Q Consensus 105 ~~ 106 (243)
+.
T Consensus 76 ~g 77 (97)
T cd02949 76 DK 77 (97)
T ss_pred CC
Confidence 44
No 62
>KOG0191|consensus
Probab=99.25 E-value=1.4e-11 Score=114.80 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=77.8
Q ss_pred CCC-ceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 20 SKG-HVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 20 ~~~-v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
... +..|+..||+..+ +....++|.||+ |||+|| |.|++++..+++...+.++.+||+ .+..+|.++
T Consensus 142 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a--Pwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~ 214 (383)
T KOG0191|consen 142 VEGEVFELTKDNFDETVKDSDADWLVEFYA--PWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRL 214 (383)
T ss_pred cCCceEEccccchhhhhhccCcceEEEEec--cccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhh
Confidence 345 9999999999988 778899999999 999999 999999999976678999999997 789999999
Q ss_pred Ccc-CceEEEec-------------cchHhhhhhh
Q psy3889 94 CLT-PQLLWAFC-------------VADSLNKTLF 114 (243)
Q Consensus 94 ~V~-~PTi~lF~-------------~~~~l~~~~f 114 (243)
+|+ |||+++|+ +.+.++. |
T Consensus 215 ~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~--~ 247 (383)
T KOG0191|consen 215 EVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVS--F 247 (383)
T ss_pred cccCCceEEEecCCCcccccccccccHHHHHH--H
Confidence 999 99999998 5677888 8
No 63
>KOG0908|consensus
Probab=99.25 E-value=1.7e-11 Score=106.84 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred cChhhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-Cc
Q psy3889 26 LDTHNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQ 98 (243)
Q Consensus 26 L~~~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~P 98 (243)
=++..|+..+ ...+.|+|+||| .|||+| |+|+.+|+.|. ..+|.+||+| +-+..+.-+||. .|
T Consensus 7 ~~d~df~~~ls~ag~k~v~Vdfta--~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd-----~c~~taa~~gV~amP 76 (288)
T KOG0908|consen 7 NSDSDFQRELSAAGGKLVVVDFTA--SWCGPCKRIAPIFSDLANKYP---GAVFLKVDVD-----ECRGTAATNGVNAMP 76 (288)
T ss_pred cCcHHHHHhhhccCceEEEEEEEe--cccchHHhhhhHHHHhhhhCc---ccEEEEEeHH-----HhhchhhhcCcccCc
Confidence 3567899988 456799999999 999999 99999999984 6899999998 889999999999 99
Q ss_pred eEEEec
Q psy3889 99 LLWAFC 104 (243)
Q Consensus 99 Ti~lF~ 104 (243)
|+++|+
T Consensus 77 TFiff~ 82 (288)
T KOG0908|consen 77 TFIFFR 82 (288)
T ss_pred eEEEEe
Confidence 999998
No 64
>KOG0191|consensus
Probab=99.25 E-value=1.5e-11 Score=114.54 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCceEcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCc
Q psy3889 21 KGHVSLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCL 95 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V 95 (243)
.....++..+|...+ ....+++|+||+ |||+|| |.|.++++.+.+ .+.++.|||+ .++++|++|+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fya--pwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~-----~~~~~~~~y~i 99 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYA--PWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCD-----EHKDLCEKYGI 99 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEEC--CCCcchhhhchHHHHHHHHhcC--ceEEEEeCch-----hhHHHHHhcCC
Confidence 344555566666655 788899999999 999999 999999999965 8999999998 89999999999
Q ss_pred c-CceEEEec
Q psy3889 96 T-PQLLWAFC 104 (243)
Q Consensus 96 ~-~PTi~lF~ 104 (243)
+ |||+.+|.
T Consensus 100 ~gfPtl~~f~ 109 (383)
T KOG0191|consen 100 QGFPTLKVFR 109 (383)
T ss_pred ccCcEEEEEc
Confidence 9 99999998
No 65
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.21 E-value=5.7e-11 Score=101.12 Aligned_cols=78 Identities=6% Similarity=-0.062 Sum_probs=65.5
Q ss_pred CCceEcChhhHHHHh-cc--CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 21 KGHVSLDTHNFDKIL-SK--FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v-~~--~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
+.+.+++..+|...| .. +.+|+|.||+ |||++| |.|+++|..+. .+.|++||++ . .+.+|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya--~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad-----~---~~~~~ 148 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYK--DGIPLCRLLNQHLSELARKFP---DTKFVKIIST-----Q---CIPNY 148 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEEC--CCCchHHHHHHHHHHHHHHCC---CCEEEEEEhH-----H---hHhhC
Confidence 568899999999866 43 3589999999 999999 99999999873 6899999996 2 26899
Q ss_pred Ccc-CceEEEeccchHhhh
Q psy3889 94 CLT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 94 ~V~-~PTi~lF~~~~~l~~ 111 (243)
+|. +||+++|++++-+-+
T Consensus 149 ~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 149 PDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred CCCCCCEEEEEECCEEEEE
Confidence 999 999999996654444
No 66
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.10 E-value=4.5e-10 Score=88.87 Aligned_cols=87 Identities=11% Similarity=-0.015 Sum_probs=66.6
Q ss_pred cCCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCC--Cc----ccHH
Q psy3889 19 LSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYG--ER----DNED 88 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~--~~----~n~~ 88 (243)
+-++...++..+|.+.+.+++.++|.|++ ||||+| |.++++++.. ++.+..||++..+ +. +..+
T Consensus 4 ~i~~~~~it~~~~~~~i~~~~~~iv~f~~--~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 4 NIKGLEVTTVVRALEALDKKETATFFIGR--KTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred hhccceecCHHHHHHHHHcCCcEEEEEEC--CCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHH
Confidence 34678899999999999888999999999 999999 9999998873 4668888886211 00 1236
Q ss_pred HHhhcC----cc-CceEEEeccchHhhh
Q psy3889 89 LAKRGC----LT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 89 l~~~~~----V~-~PTi~lF~~~~~l~~ 111 (243)
+.++|+ |. .||+++|++++.+..
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence 667754 66 999999996665544
No 67
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.08 E-value=3.7e-10 Score=89.17 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=61.0
Q ss_pred ChhhHHHHhcc--CCeEEEEEEe-----cCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC--cccHHHHhhc
Q psy3889 27 DTHNFDKILSK--FHTTLVKFDI-----AYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE--RDNEDLAKRG 93 (243)
Q Consensus 27 ~~~nF~~~v~~--~k~vlV~FyA-----~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~--~~n~~l~~~~ 93 (243)
+.++|.+.|.. +++|+|.||| --+||++| |.+++++..++. ++.+++||+++... ..+.++..+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 45788888843 6899999998 01499999 999999998853 68999999962110 1257999999
Q ss_pred Ccc--CceEEEeccch
Q psy3889 94 CLT--PQLLWAFCVAD 107 (243)
Q Consensus 94 ~V~--~PTi~lF~~~~ 107 (243)
+|. +||+++|.+..
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 996 99999997443
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.06 E-value=7.6e-10 Score=83.39 Aligned_cols=68 Identities=21% Similarity=0.098 Sum_probs=58.4
Q ss_pred hhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc---CceEE
Q psy3889 29 HNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT---PQLLW 101 (243)
Q Consensus 29 ~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~---~PTi~ 101 (243)
.||......+++++|.|++ +||++| |.++++|+.+++ ++.|+.||++ +++++++.|+|. +||+.
T Consensus 3 ~~~~~~~~~~~~~~~~f~~--~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~-----~~~~~~~~~~i~~~~~P~~~ 73 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYN--KDDSESEELRERFKEVAKKFKG--KLLFVVVDAD-----DFGRHLEYFGLKEEDLPVIA 73 (103)
T ss_pred hHHhhhhhcCCCEEEEEEc--CChhhHHHHHHHHHHHHHHhCC--eEEEEEEchH-----hhHHHHHHcCCChhhCCEEE
Confidence 4454444346899999999 999999 999999999964 7999999998 788999999997 99999
Q ss_pred Eecc
Q psy3889 102 AFCV 105 (243)
Q Consensus 102 lF~~ 105 (243)
+|+.
T Consensus 74 ~~~~ 77 (103)
T cd02982 74 IINL 77 (103)
T ss_pred EEec
Confidence 9985
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.00 E-value=9.4e-10 Score=86.36 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred hhHHHHhccC-CeEEEEEEecCCCCCCc----HHHH---HHHHHccCCCCcEEEEEecccCCC--------cccHHHHhh
Q psy3889 29 HNFDKILSKF-HTTLVKFDIAYPYGAKH----EAFL---EVAESSKHQPDFLVAEVGVKDYGE--------RDNEDLAKR 92 (243)
Q Consensus 29 ~nF~~~v~~~-k~vlV~FyA~~pWC~~c----p~~~---~lA~~~~~~~~v~vakVd~~d~~~--------~~n~~l~~~ 92 (243)
+.+++....+ ++++|.||+ |||++| |.+. .+.+.+. +++.+..||++.... ..+.+++.+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a--~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQ--PGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeC--CCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3455666777 999999999 999999 4442 4555554 378899999862100 024789999
Q ss_pred cCcc-CceEEEeccc
Q psy3889 93 GCLT-PQLLWAFCVA 106 (243)
Q Consensus 93 ~~V~-~PTi~lF~~~ 106 (243)
|+|. +||+++|...
T Consensus 80 ~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 80 YRVRFTPTVIFLDPE 94 (125)
T ss_pred cCCccccEEEEEcCC
Confidence 9999 9999999743
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.94 E-value=4.4e-09 Score=90.62 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=55.9
Q ss_pred ceEcChhhHHHHhccCCe-EEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc-Cce
Q psy3889 23 HVSLDTHNFDKILSKFHT-TLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQL 99 (243)
Q Consensus 23 v~~L~~~nF~~~v~~~k~-vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PT 99 (243)
...|++.+.+.+-...++ +++.||+ |||++|+....+.+.++ ..+++.+.+||.+ .+++++.+|+|. +||
T Consensus 117 ~~~L~~~~~~~l~~~~~pv~I~~F~a--~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~-----~~~~~~~~~~V~~vPt 189 (215)
T TIGR02187 117 EPGLSEKTVELLQSLDEPVRIEVFVT--PTCPYCPYAVLMAHKFALANDKILGEMIEAN-----ENPDLAEKYGVMSVPK 189 (215)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEEC--CCCCCcHHHHHHHHHHHHhcCceEEEEEeCC-----CCHHHHHHhCCccCCE
Confidence 357777777776544444 4555999 99999954444444442 1357889999997 789999999999 999
Q ss_pred EEEec
Q psy3889 100 LWAFC 104 (243)
Q Consensus 100 i~lF~ 104 (243)
+++|.
T Consensus 190 l~i~~ 194 (215)
T TIGR02187 190 IVINK 194 (215)
T ss_pred EEEec
Confidence 99987
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.91 E-value=4.5e-09 Score=75.89 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=45.4
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
+.-||+ |||++| |.+++++..+. .++.+.+||++ ++++++++|+|. +||+++
T Consensus 3 v~~f~~--~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~-----~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 3 IELFTS--PTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVM-----ENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEC--CCCcchHHHHHHHHHHHHHhc--CceEEEEEeCc-----cCHHHHHHcCCccCCEEEE
Confidence 567999 999999 88888888874 35889999997 788999999999 999985
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.85 E-value=1.3e-08 Score=87.67 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=54.2
Q ss_pred hhhHHHHhccCCeEEEEEEec-CCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 28 THNFDKILSKFHTTLVKFDIA-YPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 28 ~~nF~~~v~~~k~vlV~FyA~-~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
...|-+-+.++ ..++.|++. +|||++| |.++++++.+. .-.+.+++||.+ ++++++++|+|. +||++
T Consensus 10 ~~~~~~~~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~-----~~~~l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 10 KELFLKELKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTP-----EDKEEAEKYGVERVPTTI 82 (215)
T ss_pred HHHHHHhcCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCc-----ccHHHHHHcCCCccCEEE
Confidence 44555555444 445557652 4899999 99999998873 223556777765 789999999999 99999
Q ss_pred EeccchHh
Q psy3889 102 AFCVADSL 109 (243)
Q Consensus 102 lF~~~~~l 109 (243)
+|+++...
T Consensus 83 ~f~~g~~~ 90 (215)
T TIGR02187 83 ILEEGKDG 90 (215)
T ss_pred EEeCCeee
Confidence 99855443
No 73
>KOG0914|consensus
Probab=98.81 E-value=2.8e-08 Score=85.35 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=70.6
Q ss_pred CCceEc-ChhhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc
Q psy3889 21 KGHVSL-DTHNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG 93 (243)
Q Consensus 21 ~~v~~L-~~~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~ 93 (243)
..+.-+ +.+.+++.. ++...++|.||| .|.+.| |+|.+++..|. .+.+.|++||+- ..++.+.+|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa--~ws~~Cv~~spvfaeLS~kyn-~~~lkFGkvDiG-----rfpd~a~kf 195 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFA--CWSPKCVRFSPVFAELSIKYN-NNLLKFGKVDIG-----RFPDVAAKF 195 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEe--ecChhhcccccccHHHHHHhC-CCCCcccceeec-----cCcChHHhe
Confidence 356777 667788877 566689999999 999999 99999999994 568999999995 788899999
Q ss_pred Ccc-------CceEEEeccchHhhh
Q psy3889 94 CLT-------PQLLWAFCVADSLNK 111 (243)
Q Consensus 94 ~V~-------~PTi~lF~~~~~l~~ 111 (243)
+|+ .||+++|..+.+..+
T Consensus 196 ris~s~~srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGKEVSR 220 (265)
T ss_pred eeccCcccccCCeEEEEccchhhhc
Confidence 874 899999998877777
No 74
>PTZ00062 glutaredoxin; Provisional
Probab=98.81 E-value=3.5e-08 Score=84.80 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=55.2
Q ss_pred ChhhHHHHhccC-CeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 27 DTHNFDKILSKF-HTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 27 ~~~nF~~~v~~~-k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
+.+.|++.+.++ ..+++.|+| |||++| |++.++++.+ +++.|++||.+ |+|. +||+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a--~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d-------------~~V~~vPtf 66 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKS--SKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA-------------DANNEYGVF 66 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeC--CCCcchHHHHHHHHHHHHHC---CCcEEEEEccc-------------cCcccceEE
Confidence 467899988543 678999999 999999 8999999987 37999999862 9999 9999
Q ss_pred EEeccchHhhh
Q psy3889 101 WAFCVADSLNK 111 (243)
Q Consensus 101 ~lF~~~~~l~~ 111 (243)
.+|++...+-+
T Consensus 67 v~~~~g~~i~r 77 (204)
T PTZ00062 67 EFYQNSQLINS 77 (204)
T ss_pred EEEECCEEEee
Confidence 99995444444
No 75
>PHA02125 thioredoxin-like protein
Probab=98.80 E-value=8e-09 Score=74.54 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=37.8
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
+|.||+ |||++| |.+++++ +.+++||++ ++.+++++|+|. +||++
T Consensus 2 iv~f~a--~wC~~Ck~~~~~l~~~~--------~~~~~vd~~-----~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGA--EWCANCKMVKPMLANVE--------YTYVDVDTD-----EGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEEC--CCCHhHHHHHHHHHHHh--------heEEeeeCC-----CCHHHHHHcCCceeCeEE
Confidence 688999 999999 6665442 457889886 789999999999 99998
No 76
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.79 E-value=2.1e-08 Score=70.11 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=41.6
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++.|++ |||++| |.+++++.. .+++.+..+|++ ++++++++|+|. +||+.+
T Consensus 3 v~~f~~--~~C~~C~~~~~~l~~l~~~---~~~i~~~~id~~-----~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVS--PTCPYCPDAVQAANRIAAL---NPNISAEMIDAA-----EFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEC--CCCCCcHHHHHHHHHHHHh---CCceEEEEEEcc-----cCHhHHHHcCCcccCEEEE
Confidence 567999 999999 555555543 246999999997 678899999999 999865
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.76 E-value=1.8e-08 Score=79.08 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=51.9
Q ss_pred hhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc---CceE
Q psy3889 28 THNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT---PQLL 100 (243)
Q Consensus 28 ~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~---~PTi 100 (243)
.+.+.....++++|+|.||| +||++| |.+.+.+.......+++ .||++. ....+..+|++. +||+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a--~WC~~C~~~~~~~~~~~~~~~~~~~fv--~v~vd~----~~~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHK--TWCGACKALKPKFAESKEISELSHNFV--MVNLED----DEEPKDEEFSPDGGYIPRI 80 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeC--CcCHHHHHHHHHHhhhHHHHhhcCcEE--EEEecC----CCCchhhhcccCCCccceE
Confidence 34455555788999999999 999999 78888766543323444 455541 112345688875 8999
Q ss_pred EEec-cchHhhh
Q psy3889 101 WAFC-VADSLNK 111 (243)
Q Consensus 101 ~lF~-~~~~l~~ 111 (243)
++|. +++-+..
T Consensus 81 ~f~~~~Gk~~~~ 92 (117)
T cd02959 81 LFLDPSGDVHPE 92 (117)
T ss_pred EEECCCCCCchh
Confidence 9996 6655555
No 78
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.69 E-value=4.9e-08 Score=95.65 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.4
Q ss_pred ceEc-ChhhHHHHhc----cCCeEEEEEEecCCCCCCcHHH-------HHHHHHccCCCCcEEEEEecccCCCcccHHHH
Q psy3889 23 HVSL-DTHNFDKILS----KFHTTLVKFDIAYPYGAKHEAF-------LEVAESSKHQPDFLVAEVGVKDYGERDNEDLA 90 (243)
Q Consensus 23 v~~L-~~~nF~~~v~----~~k~vlV~FyA~~pWC~~cp~~-------~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~ 90 (243)
..++ +.++|++.+. ++++|+|+||| +||++|..+ .++.+.++ ++.+.+||+++. +.++.+++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A--~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~-~~~~~~l~ 527 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYA--DWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTAN-NAEDVALL 527 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEEC--CcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCC-ChhhHHHH
Confidence 3344 4577887762 47899999999 999999433 44555553 689999999743 23568999
Q ss_pred hhcCcc-CceEEEec-cchH
Q psy3889 91 KRGCLT-PQLLWAFC-VADS 108 (243)
Q Consensus 91 ~~~~V~-~PTi~lF~-~~~~ 108 (243)
++|+|. +||+++|. +.+.
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred HHcCCCCCCEEEEECCCCCC
Confidence 999999 99999996 4433
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.67 E-value=7.2e-08 Score=76.01 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=50.5
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCC-CCcEEEEEecccCCC-------------------cccHHHHhh
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQ-PDFLVAEVGVKDYGE-------------------RDNEDLAKR 92 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~-~~v~vakVd~~d~~~-------------------~~n~~l~~~ 92 (243)
++++|||.||+ +||++| |.+.++.+.++.. +++.+.-|+++...+ ..+..++++
T Consensus 17 ~gk~vll~Fwa--~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 17 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred CCcEEEEEEEC--CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 56899999999 999999 8999888888542 467777777642100 112578899
Q ss_pred cCcc-CceEEEec
Q psy3889 93 GCLT-PQLLWAFC 104 (243)
Q Consensus 93 ~~V~-~PTi~lF~ 104 (243)
|+|. +||++++.
T Consensus 95 ~~v~~~P~~~lid 107 (131)
T cd03009 95 FKIEGIPTLIILD 107 (131)
T ss_pred cCCCCCCEEEEEC
Confidence 9999 99999996
No 80
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.65 E-value=9.5e-08 Score=75.76 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=50.0
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCC-CCcEEEEEecccCC-------------------C-cccHHHHh
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQ-PDFLVAEVGVKDYG-------------------E-RDNEDLAK 91 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~-~~v~vakVd~~d~~-------------------~-~~n~~l~~ 91 (243)
+++.++|.||+ +||++| |.+.++++.++.. .++.+.-|+++... + .....+++
T Consensus 16 ~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 16 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 57899999999 999999 8899998888643 46777777765210 0 11246778
Q ss_pred hcCcc-CceEEEec
Q psy3889 92 RGCLT-PQLLWAFC 104 (243)
Q Consensus 92 ~~~V~-~PTi~lF~ 104 (243)
.|+|. +||++++.
T Consensus 94 ~~~v~~iPt~~lid 107 (132)
T cd02964 94 QFKVEGIPTLVVLK 107 (132)
T ss_pred HcCCCCCCEEEEEC
Confidence 89999 99999886
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.65 E-value=1.2e-07 Score=75.28 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=53.6
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCcHHHH-------HHHHHccCCCCcEEEEEecccCCCcccHHHHh--------
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFL-------EVAESSKHQPDFLVAEVGVKDYGERDNEDLAK-------- 91 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~-------~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~-------- 91 (243)
+++.|.....++|+|||.||+ +||+.|-.++ ++++.+ ..++++++||.+ +++++++
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a--~WC~~Ck~me~~~f~~~~V~~~l--~~~fv~VkvD~~-----~~~~~~~~~~~~~~~ 74 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGY--STCHWCHVMEHESFEDEEVAAIL--NENFVPIKVDRE-----ERPDVDKIYMNAAQA 74 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEcc--CCCHhHHHHHHHccCCHHHHHHH--hCCEEEEEEeCC-----cCcHHHHHHHHHHHH
Confidence 466788888899999999999 9999995554 344443 237899999997 4555554
Q ss_pred hcCcc-CceEEEecc
Q psy3889 92 RGCLT-PQLLWAFCV 105 (243)
Q Consensus 92 ~~~V~-~PTi~lF~~ 105 (243)
.|++. +||++++..
T Consensus 75 ~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 75 MTGQGGWPLNVFLTP 89 (124)
T ss_pred hcCCCCCCEEEEECC
Confidence 35899 999999973
No 82
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.63 E-value=2e-07 Score=76.64 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=43.8
Q ss_pred hccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc-------ccHHHH-hhc---Ccc-Cc
Q psy3889 35 LSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER-------DNEDLA-KRG---CLT-PQ 98 (243)
Q Consensus 35 v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~-------~n~~l~-~~~---~V~-~P 98 (243)
+..++..+|.||| +||++| |.++++++.+. +.|.-|+.++.... ...... ..| +|. +|
T Consensus 47 ~~l~~~~lvnFWA--sWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iP 120 (153)
T TIGR02738 47 ANQDDYALVFFYQ--STCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTP 120 (153)
T ss_pred hhcCCCEEEEEEC--CCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCC
Confidence 4456788999999 999999 99999998872 45556666521100 012333 445 788 99
Q ss_pred eEEEec
Q psy3889 99 LLWAFC 104 (243)
Q Consensus 99 Ti~lF~ 104 (243)
|.+++.
T Consensus 121 Tt~LID 126 (153)
T TIGR02738 121 ATFLVN 126 (153)
T ss_pred eEEEEe
Confidence 999774
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.62 E-value=1.6e-07 Score=77.17 Aligned_cols=82 Identities=9% Similarity=-0.009 Sum_probs=57.4
Q ss_pred EcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC-----------------
Q psy3889 25 SLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE----------------- 83 (243)
Q Consensus 25 ~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~----------------- 83 (243)
.++...+.--.-.+++++|.||+ +||++| |.+.++.+++.+ .++.+..|++++-.+
T Consensus 48 ~~~g~~~~l~~~~~k~~~l~f~a--~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 48 DLEGKKIELKDLKGKGVFLNFWG--TWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred cCCCCEEeHHHcCCCEEEEEEEC--CcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 44444443322356899999999 999999 889999988853 357888888752110
Q ss_pred cccHHHHhhcCcc-CceEEEeccchHh
Q psy3889 84 RDNEDLAKRGCLT-PQLLWAFCVADSL 109 (243)
Q Consensus 84 ~~n~~l~~~~~V~-~PTi~lF~~~~~l 109 (243)
..+..++++|+|. +|+++++.....+
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i 151 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKV 151 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcE
Confidence 1346788999999 9998887633333
No 84
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.58 E-value=1.6e-07 Score=68.07 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=39.3
Q ss_pred EEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 43 VKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 43 V~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
|.||+ |||++| |.++++++++.. ++.+.+|| +.+.+.+|+|. .||+.+
T Consensus 3 i~~~a--~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~--------~~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 3 IQIYG--TGCANCQMTEKNVKKAVEELGI--DAEFEKVT--------DMNEILEAGVTATPGVAV 55 (76)
T ss_pred EEEEC--CCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC--------CHHHHHHcCCCcCCEEEE
Confidence 78999 999999 888999998743 57777775 13347889999 999997
No 85
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.54 E-value=2.3e-07 Score=69.18 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=49.9
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC------------------cccHHHHhhcC
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE------------------RDNEDLAKRGC 94 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~------------------~~n~~l~~~~~ 94 (243)
.+++++|.||+ +||++| |.+.++...+. .+++.++.|+++.... ..+..+++.|+
T Consensus 18 ~~k~~ll~f~~--~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (116)
T cd02966 18 KGKVVLVNFWA--SWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG 94 (116)
T ss_pred CCCEEEEEeec--ccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence 47899999999 999999 78888888875 4679999999962000 01267888888
Q ss_pred cc-CceEEEec
Q psy3889 95 LT-PQLLWAFC 104 (243)
Q Consensus 95 V~-~PTi~lF~ 104 (243)
+. +|+++++.
T Consensus 95 ~~~~P~~~l~d 105 (116)
T cd02966 95 VRGLPTTFLID 105 (116)
T ss_pred cCccceEEEEC
Confidence 88 88888774
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.51 E-value=3.9e-07 Score=68.19 Aligned_cols=58 Identities=3% Similarity=-0.071 Sum_probs=44.1
Q ss_pred CCeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 38 FHTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++..+.-|++ |||++||...++.+.+. ..+++.+..+|.+ +.++++++|+|. +||+.+
T Consensus 12 ~pv~i~~F~~--~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~-----~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 12 GPINFETYVS--LSCHNCPDVVQALNLMAVLNPNIEHEMIDGA-----LFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred CCEEEEEEEC--CCCCCcHHHHHHHHHHHHHCCCceEEEEEhH-----hCHHHHHHcCCccCCEEEE
Confidence 4456777999 99999954444444432 1347999999997 789999999999 999963
No 87
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.48 E-value=3.7e-07 Score=81.70 Aligned_cols=63 Identities=11% Similarity=-0.060 Sum_probs=49.3
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC------cccHHHHhhcCcc-CceEEEecc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE------RDNEDLAKRGCLT-PQLLWAFCV 105 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~------~~n~~l~~~~~V~-~PTi~lF~~ 105 (243)
.++++||.||+ +||++| |++.++++.+. +.|..|++|.-.. ..+..++++|||. +||+++|..
T Consensus 165 ~~k~~Lv~F~A--swCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 165 AKKSGLFFFFK--SDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred cCCeEEEEEEC--CCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 47899999999 999999 99999999873 5666666642100 1246789999999 999999874
No 88
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.48 E-value=5.2e-07 Score=87.28 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=49.4
Q ss_pred ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccC-----------------------CCcccHH
Q psy3889 36 SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDY-----------------------GERDNED 88 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~-----------------------~~~~n~~ 88 (243)
+++++|||.||| +||++| |.++++++.++ .+++.|..|..+.. .-..+..
T Consensus 54 skGKpVvV~FWA--TWCppCk~emP~L~eL~~e~k-~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWA--SWCPLCLSELGETEKWAQDAK-FSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred cCCCEEEEEEEc--CCCHHHHHHHHHHHHHHHHhc-cCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 578899999999 999999 99999999885 23565655533100 0014678
Q ss_pred HHhhcCcc-CceEEEec
Q psy3889 89 LAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 89 l~~~~~V~-~PTi~lF~ 104 (243)
+++.|+|. +||++++.
T Consensus 131 lak~fgV~giPTt~IID 147 (521)
T PRK14018 131 LAQSLNISVYPSWAIIG 147 (521)
T ss_pred HHHHcCCCCcCeEEEEc
Confidence 99999999 99997663
No 89
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.47 E-value=1.3e-06 Score=70.11 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=60.7
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
+.-.++.++++..+......+|-|-...--++.+ =++++++++|. ..++.+++||++ ++++++.+|||.
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD-----~~~~LA~~fgV~s 91 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLE-----QSEAIGDRFGVFR 91 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECC-----CCHHHHHHcCCcc
Confidence 6777888999999966655555443311122233 48899999994 346999999998 899999999999
Q ss_pred CceEEEeccchH
Q psy3889 97 PQLLWAFCVADS 108 (243)
Q Consensus 97 ~PTi~lF~~~~~ 108 (243)
+||+++|++++-
T Consensus 92 iPTLl~FkdGk~ 103 (132)
T PRK11509 92 FPATLVFTGGNY 103 (132)
T ss_pred CCEEEEEECCEE
Confidence 999999995433
No 90
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.46 E-value=4.2e-07 Score=69.53 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=44.6
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++++++|.||+ +||++| |.++++++.+.. ++.+..+. + .+..+..++++++++. +|++.
T Consensus 20 ~gk~vvl~F~~--~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~-~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 20 PGRPTLLFFLS--PTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-D-GEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCCeEEEEEEC--CCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-C-CCHHHHHHHHHHhCCCCCcEEe
Confidence 47899999999 999999 899999887743 45555452 1 1223567899999998 99874
No 91
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.43 E-value=6.6e-07 Score=73.09 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=33.7
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccC------CCCcEEEEEecc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH------QPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~------~~~v~vakVd~~ 79 (243)
++++|+|.||| +||++| |.+.++.+.++. ..++.+.-|+.+
T Consensus 24 kgk~vlL~FwA--sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D 74 (146)
T cd03008 24 ENRVLLLFFGA--VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD 74 (146)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC
Confidence 57899999999 999999 888888776642 236888888875
No 92
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.42 E-value=7.1e-07 Score=66.21 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 38 FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
+++++|.||+ +||++| |.+.++.+.++..+++.|.-|+++
T Consensus 1 gK~~ll~fwa--~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 1 GKPVLLYFWA--SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp TSEEEEEEE---TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred CCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 5799999999 999999 899999988874568999999885
No 93
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.32 E-value=1.5e-06 Score=67.94 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=42.2
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccC------------------CCcccHHHHhhcC
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDY------------------GERDNEDLAKRGC 94 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~------------------~~~~n~~l~~~~~ 94 (243)
.+++++|.||+ +||++| |.++++++.+ ++.|..|+.++- .-..+..++..|+
T Consensus 24 ~gk~vvv~F~a--~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 24 KGKPYLLNVWA--SWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 57899999999 999999 8888887664 366776664210 0003456777788
Q ss_pred cc-CceEEEe
Q psy3889 95 LT-PQLLWAF 103 (243)
Q Consensus 95 V~-~PTi~lF 103 (243)
|. +|+.+++
T Consensus 98 v~~~P~~~~l 107 (127)
T cd03010 98 VYGVPETFLI 107 (127)
T ss_pred CCCCCeEEEE
Confidence 88 8855544
No 94
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.31 E-value=6.6e-07 Score=68.30 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=41.4
Q ss_pred ccCCeEEEEEEecCCCCCCcH-HHHHHHH--Hcc--CCCCcEEEEEecccCCC---------------cccHHHHhhcCc
Q psy3889 36 SKFHTTLVKFDIAYPYGAKHE-AFLEVAE--SSK--HQPDFLVAEVGVKDYGE---------------RDNEDLAKRGCL 95 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~cp-~~~~lA~--~~~--~~~~v~vakVd~~d~~~---------------~~n~~l~~~~~V 95 (243)
.++++++|.|++ |||++|- ....+.. .+. -..++.+..+++++..+ ..+.+++++|+|
T Consensus 3 ~~~k~~v~~F~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTD--PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE---TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 357899999999 9999993 2233321 111 12368888888862100 013579999999
Q ss_pred c-CceEEEec
Q psy3889 96 T-PQLLWAFC 104 (243)
Q Consensus 96 ~-~PTi~lF~ 104 (243)
+ +||+.++.
T Consensus 81 ~gtPt~~~~d 90 (112)
T PF13098_consen 81 NGTPTIVFLD 90 (112)
T ss_dssp -SSSEEEECT
T ss_pred CccCEEEEEc
Confidence 9 99999985
No 95
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.29 E-value=1.9e-06 Score=66.78 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=48.3
Q ss_pred cChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCC------------------C
Q psy3889 26 LDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYG------------------E 83 (243)
Q Consensus 26 L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~------------------~ 83 (243)
++..++......+++++|.||+ +||++| |.+.++++.+ . +.-|..++.+ .
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~--~~C~~C~~~~~~l~~~~~~~----~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWA--TWCPVCRFTSPTVNQLAADY----P--VVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEEC--CcChhhhhhChHHHHHHhhC----C--EEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 4444454444456899999999 999999 7777776653 2 2222221100 0
Q ss_pred cccHHHHhhcCcc-CceEEEeccch
Q psy3889 84 RDNEDLAKRGCLT-PQLLWAFCVAD 107 (243)
Q Consensus 84 ~~n~~l~~~~~V~-~PTi~lF~~~~ 107 (243)
..+.+++++|+|. +||+.++....
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~g 104 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGG 104 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCC
Confidence 1456799999999 99999986433
No 96
>KOG0913|consensus
Probab=98.15 E-value=8.6e-07 Score=76.93 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=69.9
Q ss_pred cCCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 19 LSKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
..+.++.++.+|+..+..+ .++++|+| |||+.| |.|+.+|.--. +-.|.+++||++ .|+-|..||-
T Consensus 22 r~s~~~~~~eenw~~~l~g--ewmi~~~a--p~~psc~~~~~~~~~~a~~s~-dL~v~va~VDvt-----~npgLsGRF~ 91 (248)
T KOG0913|consen 22 RSSKLTRIDEENWKELLTG--EWMIEFGA--PWCPSCSDLIPHLENFATVSL-DLGVKVAKVDVT-----TNPGLSGRFL 91 (248)
T ss_pred ccceeEEecccchhhhhch--HHHHHhcC--CCCccccchHHHHhccCCccC-CCceeEEEEEEE-----eccccceeeE
Confidence 3447899999999998854 56889999 999999 78887775432 357899999998 8999999999
Q ss_pred cc-CceEEEec-----------cchHhhhhhh
Q psy3889 95 LT-PQLLWAFC-----------VADSLNKTLF 114 (243)
Q Consensus 95 V~-~PTi~lF~-----------~~~~l~~~~f 114 (243)
|. .|||.-.+ +..+++. |
T Consensus 92 vtaLptIYHvkDGeFrrysgaRdk~dfis--f 121 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEFRRYSGARDKNDFIS--F 121 (248)
T ss_pred EEecceEEEeeccccccccCcccchhHHH--H
Confidence 99 99998665 6778888 7
No 97
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.14 E-value=6e-06 Score=68.61 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=28.3
Q ss_pred ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 36 SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.++++++|.||+ +||++| |.++++++ .++.+..|+.+
T Consensus 61 ~~gk~vll~F~a--~wC~~C~~~~p~l~~l~~-----~~~~vi~V~~~ 101 (173)
T TIGR00385 61 IQGKPVLLNVWA--SWCPPCRAEHPYLNELAK-----DGLPIVGVDYK 101 (173)
T ss_pred cCCCEEEEEEEC--CcCHHHHHHHHHHHHHHH-----cCCEEEEEECC
Confidence 367899999999 999999 67666653 24777777753
No 98
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.13 E-value=1.6e-05 Score=61.50 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=51.8
Q ss_pred hHHHHh----ccCCeEEEEEEecCCCCCCcHHHH-------HHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-C
Q psy3889 30 NFDKIL----SKFHTTLVKFDIAYPYGAKHEAFL-------EVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-P 97 (243)
Q Consensus 30 nF~~~v----~~~k~vlV~FyA~~pWC~~cp~~~-------~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~ 97 (243)
+|++.+ .++++++|.|++ +||+.|..|. .+.+.+. .++++.++|++ ..+...++..|++. +
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~--~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~---~~e~~~~~~~~~~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS--EDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDID---SSEGQRFLQSYKVDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec--CCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCC---CccHHHHHHHhCccCC
Confidence 455544 568999999999 9999994443 3444443 37888899886 34578899999999 9
Q ss_pred ceEEEec
Q psy3889 98 QLLWAFC 104 (243)
Q Consensus 98 PTi~lF~ 104 (243)
||+.++.
T Consensus 78 P~~~~i~ 84 (114)
T cd02958 78 PHIAIID 84 (114)
T ss_pred CeEEEEe
Confidence 9999885
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.12 E-value=9.3e-06 Score=84.88 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=51.0
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC----------------------cccHHHH
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE----------------------RDNEDLA 90 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~----------------------~~n~~l~ 90 (243)
++++|+|.||| +||++| |.++++.+.+++ .++.|..|.+.+.|+ ..+..+.
T Consensus 419 kGK~vll~FWA--sWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWT--YCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEEC--CcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 57899999999 999999 999999999853 457777775322221 1245688
Q ss_pred hhcCcc-CceEEEec
Q psy3889 91 KRGCLT-PQLLWAFC 104 (243)
Q Consensus 91 ~~~~V~-~PTi~lF~ 104 (243)
++|+|. +||+++|.
T Consensus 496 ~~~~V~~iPt~ilid 510 (1057)
T PLN02919 496 RELGVSSWPTFAVVS 510 (1057)
T ss_pred HhcCCCccceEEEEC
Confidence 899999 99999994
No 100
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.12 E-value=7e-06 Score=59.88 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=41.0
Q ss_pred HHhccCCeEEEEEEecCCCCCCcHHHHH-------HHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 33 KILSKFHTTLVKFDIAYPYGAKHEAFLE-------VAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 33 ~~v~~~k~vlV~FyA~~pWC~~cp~~~~-------lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
+....+++++|.|++ +||++|-.+++ +.+.+. .+++..+||.+ ....-. ++... +||++++.
T Consensus 12 ~A~~~~kpvlv~f~a--~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~-----~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGA--DWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVD-----DEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHTSEEEEEEET--TTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETT-----THHHHH-HHHHCSSSEEEEEE
T ss_pred HHHHcCCCEEEEEEC--CCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcC-----CCChhH-HhCCccCCEEEEeC
Confidence 334689999999999 99999933332 222222 37899999996 222222 22226 99999873
No 101
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.11 E-value=1.1e-05 Score=67.84 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=29.6
Q ss_pred ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 36 SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.++++++|.||+ +||++| |.+.++++ .++.|..|+.+
T Consensus 66 ~~gk~vvv~Fwa--twC~~C~~e~p~l~~l~~-----~~~~vi~v~~~ 106 (185)
T PRK15412 66 TQGKPVLLNVWA--TWCPTCRAEHQYLNQLSA-----QGIRVVGMNYK 106 (185)
T ss_pred cCCCEEEEEEEC--CCCHHHHHHHHHHHHHHH-----cCCEEEEEECC
Confidence 368899999999 999999 77777753 25778888764
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.09 E-value=1.4e-05 Score=62.70 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=42.9
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC----cccHHHHhhcCccCce
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE----RDNEDLAKRGCLTPQL 99 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~----~~n~~l~~~~~V~~PT 99 (243)
++++++|.||+ +||++| |.+.++.+.++. .++.+.-|+.++.+. ....++++++++.||.
T Consensus 22 ~gk~vvl~F~a--~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (126)
T cd03012 22 RGKVVLLDFWT--YCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPV 89 (126)
T ss_pred CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCE
Confidence 56899999999 999999 899999999864 568888786532111 1124456666666663
No 103
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.02 E-value=1.4e-05 Score=58.44 Aligned_cols=64 Identities=28% Similarity=0.256 Sum_probs=53.8
Q ss_pred CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC--cc-CceEEEeccchHh
Q psy3889 38 FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC--LT-PQLLWAFCVADSL 109 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~--V~-~PTi~lF~~~~~l 109 (243)
++.++|.||+ +||++| |.+.++++.+.. .+.+..+|..+ .++++...|+ +. +|++.++.+....
T Consensus 32 ~~~~~v~f~~--~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWA--PWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDD----ENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEc--CcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCC----CChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 7799999999 999999 999999988854 67888888841 5788999999 88 9999988866663
No 104
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.00 E-value=1.3e-05 Score=68.57 Aligned_cols=62 Identities=3% Similarity=0.040 Sum_probs=48.8
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccC-----CC-cccHHHHhhcCccCceEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDY-----GE-RDNEDLAKRGCLTPQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~-----~~-~~n~~l~~~~~V~~PTi~ 101 (243)
++++|||.||| +||++| |.+.++.+.++ ..++.|.-|+++++ +. .+...+++++++.||.+.
T Consensus 38 kGkvvlv~fwA--swC~~C~~e~p~L~~l~~~~~-~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~ 109 (199)
T PTZ00056 38 KNKVLMITNSA--SKCGLTKKHVDQMNRLHSVFN-PLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFE 109 (199)
T ss_pred CCCEEEEEEEC--CCCCChHHHHHHHHHHHHHHh-cCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeee
Confidence 57899999999 999999 89999999885 34688999988532 11 234678888898888764
No 105
>smart00594 UAS UAS domain.
Probab=97.98 E-value=3.5e-05 Score=60.59 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=51.8
Q ss_pred hhHHHHh----ccCCeEEEEEEecCCCCCCcHHHHH-------HHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 29 HNFDKIL----SKFHTTLVKFDIAYPYGAKHEAFLE-------VAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 29 ~nF~~~v----~~~k~vlV~FyA~~pWC~~cp~~~~-------lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
.+|++.+ ..+|.++|.|++ +||+.|..|.+ +.+.+. .++++..+|++ ..+..+++.+|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~--~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~---~~eg~~l~~~~~~~~ 86 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHS--QDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVD---TSEGQRVSQFYKLDS 86 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeC--CCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCC---ChhHHHHHHhcCcCC
Confidence 4566654 567899999999 99999944332 223332 37888899886 34568999999999
Q ss_pred CceEEEec
Q psy3889 97 PQLLWAFC 104 (243)
Q Consensus 97 ~PTi~lF~ 104 (243)
||++.++.
T Consensus 87 ~P~~~~l~ 94 (122)
T smart00594 87 FPYVAIVD 94 (122)
T ss_pred CCEEEEEe
Confidence 99999886
No 106
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.96 E-value=1.7e-05 Score=76.96 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=58.1
Q ss_pred eEcChh-hHHHHhccCC--eEEEEEEecCCCCCCcHHHHHHH-----HHccCCCCcEEEEEecccCCCcccHHHHhhcCc
Q psy3889 24 VSLDTH-NFDKILSKFH--TTLVKFDIAYPYGAKHEAFLEVA-----ESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCL 95 (243)
Q Consensus 24 ~~L~~~-nF~~~v~~~k--~vlV~FyA~~pWC~~cp~~~~lA-----~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V 95 (243)
..+++. ..++.+.+++ +|+|+||| .||-.|.++++.. ..+ .-.+++..++|.+. ++.++.++-++|++
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyA--dWCvtCK~~e~~tfsd~~v~~-~~~~~vlLqaDvT~-~~p~~~~lLk~~~~ 532 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYA--DWCVTCKENEKYTFSDPQVQQ-ALQDVVLLQADVTA-NDPAITALLKRLGV 532 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeeh--hHHHHhHhhhhhccCcHHHHH-hcCCeEEEEeeecC-CCHHHHHHHHHcCC
Confidence 344444 6777774444 99999999 9999997666543 222 24589999999973 44456888899999
Q ss_pred c-CceEEEec
Q psy3889 96 T-PQLLWAFC 104 (243)
Q Consensus 96 ~-~PTi~lF~ 104 (243)
- .||+++|+
T Consensus 533 ~G~P~~~ff~ 542 (569)
T COG4232 533 FGVPTYLFFG 542 (569)
T ss_pred CCCCEEEEEC
Confidence 9 99999998
No 107
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.93 E-value=2.5e-05 Score=63.42 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=46.5
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc------ccHHHHhh-cCccCceEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER------DNEDLAKR-GCLTPQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~------~n~~l~~~-~~V~~PTi~ 101 (243)
++++++|.||+ +||++| |.+.++.+.++ ..++.|.-|++..++.. ....++++ +++.||.+.
T Consensus 21 ~Gk~vvv~~~a--s~C~~c~~~~~~l~~l~~~~~-~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~ 93 (153)
T TIGR02540 21 RGKVSLVVNVA--SECGFTDQNYRALQELHRELG-PSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFS 93 (153)
T ss_pred CCCEEEEEEeC--CCCCchhhhHHHHHHHHHHHh-hCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccc
Confidence 56889999999 999999 88889999885 34789999987432211 23566664 888899765
No 108
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.2e-05 Score=61.52 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhhhhhhhcCCCceEcCh----hhHHHHhccCCeEEEEEEecCCCCCCcHHHHH-------HHHHccCCC
Q psy3889 1 MIKWICTLYFSVTLFDLVLSKGHVSLDT----HNFDKILSKFHTTLVKFDIAYPYGAKHEAFLE-------VAESSKHQP 69 (243)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~v~~L~~----~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~~-------lA~~~~~~~ 69 (243)
|.|.+.+++|++.....+...+-..-+. +........++..+++|-. +.|..|..|.+ +-+.+. +
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~ek~s~~~~~~d~ksi~~~~Kylllmfes--~~C~yC~~~KKd~~~~krlrEylk--~ 76 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNNEKRSNIDVFDDNKSISPNDKYLLLMFES--NGCSYCERFKKDLKNVKRLREYLK--E 76 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhhhHHHHHhcCccCcEEEEEEcC--CCChHHHHHHHhhcchHHHHHHHh--h
Confidence 4566666666666665555555322222 2222233678899999999 99999933332 222232 2
Q ss_pred CcEEEEEecccCCC-------c----ccHHHHhhcCcc-CceEEEec-cchHhhh
Q psy3889 70 DFLVAEVGVKDYGE-------R----DNEDLAKRGCLT-PQLLWAFC-VADSLNK 111 (243)
Q Consensus 70 ~v~vakVd~~d~~~-------~----~n~~l~~~~~V~-~PTi~lF~-~~~~l~~ 111 (243)
++.+..+++.++.. . ..++|++.|+|+ +||+.+|. +++.|..
T Consensus 77 hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 77 HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 45666666543211 0 135999999999 99999987 4444444
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.90 E-value=3e-05 Score=62.96 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=46.0
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccC-----CC-cccHHHHhh-cCccCceEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDY-----GE-RDNEDLAKR-GCLTPQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~-----~~-~~n~~l~~~-~~V~~PTi~ 101 (243)
.+++|+|.||+ +||+ | |.+.++.+.++. .++.|.-|+++.+ +. .....++++ ++++||.+.
T Consensus 21 ~Gk~vvl~fwa--twC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 21 KGKVLLIVNVA--SKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred CCCEEEEEEEc--CCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 46899999999 9999 9 999999999853 4688888887532 11 123567765 787799764
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.88 E-value=4.2e-05 Score=53.11 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
+..|++ +||++|.....+-+. .++.+..+|+++ +.....++.+++++. +||+.++.
T Consensus 2 i~lf~~--~~C~~C~~~~~~l~~----~~i~~~~vdi~~-~~~~~~~~~~~~~~~~vP~~~~~~ 58 (74)
T TIGR02196 2 VKVYTT--PWCPPCKKAKEYLTS----KGIAFEEIDVEK-DSAAREEVLKVLGQRGVPVIVIGH 58 (74)
T ss_pred EEEEcC--CCChhHHHHHHHHHH----CCCeEEEEeccC-CHHHHHHHHHHhCCCcccEEEECC
Confidence 456899 999999544443332 257888999862 111124577889999 99999873
No 111
>PLN02412 probable glutathione peroxidase
Probab=97.83 E-value=4.5e-05 Score=63.19 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=47.8
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCC---Cccc----HHHHhhcCccCceEEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYG---ERDN----EDLAKRGCLTPQLLWA 102 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~---~~~n----~~l~~~~~V~~PTi~l 102 (243)
.++++||.||+ +||+.| |.+.++.+.|+. .++.|.-|++++++ .... ..++++++++||.+.-
T Consensus 28 ~gk~vlv~f~a--~~C~~c~~e~~~l~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~ 101 (167)
T PLN02412 28 KGKVLLIVNVA--SKCGLTDSNYKELNVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDK 101 (167)
T ss_pred CCCEEEEEEeC--CCCCChHHHHHHHHHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeE
Confidence 46899999999 999999 889999999864 46999999986432 1122 3336778988998753
No 112
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.81 E-value=3.6e-05 Score=67.62 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=46.6
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCC-----C-cccHHHH-hhcCccCceE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYG-----E-RDNEDLA-KRGCLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~-----~-~~n~~l~-~~~~V~~PTi 100 (243)
.+++++|.||+ +||++| |.+.++.+.++. .++.|.-|++++++ + .+..+++ +++++.||.+
T Consensus 98 kGK~vvl~FwA--swCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl 169 (236)
T PLN02399 98 KGKVLLIVNVA--SKCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIF 169 (236)
T ss_pred CCCeEEEEEEc--CCCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccc
Confidence 56899999999 999999 899999999863 46999999986432 1 1224554 5788889964
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.77 E-value=6.6e-05 Score=60.18 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=43.4
Q ss_pred hHHHHh----ccCCeEEEEEEecCCCCCCcHHHHH-------HHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-C
Q psy3889 30 NFDKIL----SKFHTTLVKFDIAYPYGAKHEAFLE-------VAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-P 97 (243)
Q Consensus 30 nF~~~v----~~~k~vlV~FyA~~pWC~~cp~~~~-------lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~ 97 (243)
+|++.+ .++|+++|.|++ .||++|-.+++ +.+.. ..+++...++.+..+ .+.. ..+ . +
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s--dwC~~Ck~l~k~~f~~~eV~~~l--~~~Fv~V~l~~d~td--~~~~---~~g-~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL--EDCPHSQALKKAFAEHKEIQKLA--QEDFIMLNLVHETTD--KNLS---PDG-QYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC--CcCHhHHHHHHHhhCCHHHHHHH--HhCeEEEEEEeccCC--CCcC---ccC-ccc
Confidence 566543 678999999999 99999933322 12222 125666777764221 1221 234 6 9
Q ss_pred ceEEEec-cchHhhh
Q psy3889 98 QLLWAFC-VADSLNK 111 (243)
Q Consensus 98 PTi~lF~-~~~~l~~ 111 (243)
||++|+. +.+-+..
T Consensus 81 PtivFld~~g~vi~~ 95 (130)
T cd02960 81 PRIMFVDPSLTVRAD 95 (130)
T ss_pred CeEEEECCCCCCccc
Confidence 9999996 4433333
No 114
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.76 E-value=5.4e-05 Score=60.44 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCeEEEEEEecCC-CCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 37 KFHTTLVKFDIAYP-YGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~FyA~~p-WC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
++++++|.||+ + ||++| |.+.++.+.++. .++.+.-|..++ +....++.+++++.||.+
T Consensus 27 ~gk~~vv~f~~--~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v~~~~--~~~~~~~~~~~~~~~~~~ 90 (146)
T PF08534_consen 27 KGKPVVVNFWA--SAWCPPCRKELPYLNELQEKYKD-KGVDVVGVSSDD--DPPVREFLKKYGINFPVL 90 (146)
T ss_dssp TTSEEEEEEES--TTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEEEESS--SHHHHHHHHHTTTTSEEE
T ss_pred CCCeEEEEEEc--cCCCCcchhhhhhHHhhhhhhcc-CceEEEEecccC--CHHHHHHHHhhCCCceEE
Confidence 67899999999 9 99999 999999888753 467777777652 222466777777667763
No 115
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.71 E-value=9.5e-05 Score=48.02 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=38.3
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHH---hhcCcc-CceEEEec
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLA---KRGCLT-PQLLWAFC 104 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~---~~~~V~-~PTi~lF~ 104 (243)
++.|++ +||++| +.+.++ .. ...++.+..+|++ ...... ..+++. +|++.++.
T Consensus 1 l~~~~~--~~c~~c~~~~~~~~~~--~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYA--PWCPFCQALRPVLAEL--AL-LNKGVKFEAVDVD-----EDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEEC--CCChhHHhhhhHHHHH--Hh-hCCCcEEEEEEcC-----CChHHhhHHHhCCCccccEEEEEe
Confidence 467999 999999 455544 12 2458999999997 333333 478899 99999886
No 116
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.69 E-value=0.00012 Score=60.74 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=66.9
Q ss_pred ceEcChhhHHHHhccCCeEEEEEEecCCCCCCcHHHH-------HHHHHccCCCCcEEEEEecccCCCcccHHHHhhc--
Q psy3889 23 HVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFL-------EVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG-- 93 (243)
Q Consensus 23 v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~-------~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~-- 93 (243)
-...+++.|+..-..+|+++|.++. +||+.|-+++ ++|+.+. .+++-++||.+ +.+++...|
T Consensus 22 W~~w~~ea~~~Ak~e~KpIfl~ig~--~~C~wChvM~~esf~d~eVa~~lN--~~FI~VkvDre-----e~Pdid~~y~~ 92 (163)
T PF03190_consen 22 WQPWGEEALEKAKKENKPIFLSIGY--SWCHWCHVMERESFSDPEVAEYLN--RNFIPVKVDRE-----ERPDIDKIYMN 92 (163)
T ss_dssp -B-SSHHHHHHHHHHT--EEEEEE---TT-HHHHHHHHHTTT-HHHHHHHH--HH-EEEEEETT-----T-HHHHHHHHH
T ss_pred cccCCHHHHHHHHhcCCcEEEEEEe--cCCcchhhhcccCcCCHHHHHHHh--CCEEEEEeccc-----cCccHHHHHHH
Confidence 4566778888888899999999999 9999994433 3555553 36888899987 789999888
Q ss_pred ------Ccc-CceEEEeccchHhhhhhhHHHHhhhhcccccC------cCccchhhHHHHHHHHhhcHHHHHHHHHHHHH
Q psy3889 94 ------CLT-PQLLWAFCVADSLNKTLFILIIFFSSIGIWIG------AVGCLQDFDRLAKDFIRSASQERKTLLKSAED 160 (243)
Q Consensus 94 ------~V~-~PTi~lF~~~~~l~~~~f~~~~i~~~~g~~~~------~~G~i~~~d~l~~~f~~~~~~~~~~~l~~~~~ 160 (243)
|.. +|+.++... +.-.- | +|+|.+ .+|.+.-+..++..+.. +|.++.+.+++
T Consensus 93 ~~~~~~~~gGwPl~vfltP-dg~p~--~--------~~tY~P~~~~~g~~~f~~~l~~i~~~w~~----~~~~~~~~a~~ 157 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTP-DGKPF--F--------GGTYFPPEDRYGRPGFLQLLERIAELWKE----NREQVEESADE 157 (163)
T ss_dssp HHHHHHS---SSEEEEE-T-TS-EE--E--------EESS--SS-BTTB--HHHHHHHHHHHHHH----SHHHHHHHHHH
T ss_pred HHHHhcCCCCCCceEEECC-CCCee--e--------eeeecCCCCCCCCccHHHHHHHHHHHHHH----CHHHHHHHHHH
Confidence 777 999988753 22111 3 355543 34544445555544432 35556666655
Q ss_pred HH
Q psy3889 161 LW 162 (243)
Q Consensus 161 ~~ 162 (243)
+.
T Consensus 158 i~ 159 (163)
T PF03190_consen 158 IL 159 (163)
T ss_dssp T-
T ss_pred HH
Confidence 43
No 117
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.68 E-value=8.8e-05 Score=53.38 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=37.1
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++.|++ |||++|.....+-..+.-.+.+.+..||.+..++.....+.+.+++. +|++.
T Consensus 1 V~~f~~--~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSK--SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEEC--CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 467999 99999965555555553222467777776411111123477888999 99984
No 118
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.67 E-value=0.00024 Score=60.03 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC--------cccHHHHhhcCc--c-CceEEEec
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE--------RDNEDLAKRGCL--T-PQLLWAFC 104 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~--------~~n~~l~~~~~V--~-~PTi~lF~ 104 (243)
+|.||+ +||++| |.+.++++.+ .+.|.-|++++-++ .....+...|++ . +||.+++.
T Consensus 73 lV~Fwa--swCp~C~~e~P~L~~l~~~~----g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQ--GHCPYCHQFDPVLKQLAQQY----GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVN 144 (181)
T ss_pred EEEEEC--CCCHhHHHHHHHHHHHHHHc----CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEe
Confidence 778999 999999 8999999887 36666677652110 012346778884 5 99998774
No 119
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.61 E-value=0.00027 Score=64.83 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=66.1
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCc---------HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhh
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH---------EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKR 92 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c---------p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~ 92 (243)
.|++|+..||.+++.+.....|-||. |--+.. ..+-+||.+.-...++.|+.||.. .+..++++
T Consensus 35 RVi~LneKNfk~~lKkyd~l~l~yh~--p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~-----Kd~klAKK 107 (383)
T PF01216_consen 35 RVIDLNEKNFKRALKKYDVLVLYYHE--PVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK-----KDAKLAKK 107 (383)
T ss_dssp -CEEE-TTTHHHHHHH-SEEEEEEE----STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT-----TTHHHHHH
T ss_pred ceEEcchhHHHHHHHhhcEEEEEEec--CCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH-----HHHHHHHh
Confidence 59999999999999888888888998 765553 113344444434678999999997 88999999
Q ss_pred cCcc-CceEEEec-----------cchHhhhhhhHHHHhh
Q psy3889 93 GCLT-PQLLWAFC-----------VADSLNKTLFILIIFF 120 (243)
Q Consensus 93 ~~V~-~PTi~lF~-----------~~~~l~~~~f~~~~i~ 120 (243)
+|+. -++|.+|+ +++-|+. |+...+.
T Consensus 108 Lgv~E~~SiyVfkd~~~IEydG~~saDtLVe--Fl~dl~e 145 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGEVIEYDGERSADTLVE--FLLDLLE 145 (383)
T ss_dssp HT--STTEEEEEETTEEEEE-S--SHHHHHH--HHHHHHS
T ss_pred cCccccCcEEEEECCcEEEecCccCHHHHHH--HHHHhcc
Confidence 9999 99999998 7889999 9555543
No 120
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.58 E-value=0.00031 Score=59.44 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=55.5
Q ss_pred cCCeEEEEEEecCCCCCCc---HHHHHHHHHccCCCCcEEEEEecccCCCc------ccHHHHh-hcCccCceEEEec--
Q psy3889 37 KFHTTLVKFDIAYPYGAKH---EAFLEVAESSKHQPDFLVAEVGVKDYGER------DNEDLAK-RGCLTPQLLWAFC-- 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c---p~~~~lA~~~~~~~~v~vakVd~~d~~~~------~n~~l~~-~~~V~~PTi~lF~-- 104 (243)
.+++|||.|+| +||+.| |.++++.+.|+ ..++.|.-+.|++++.+ +-.++++ +|+++||.+-=..
T Consensus 24 ~GKvvLVvf~A--S~C~~~~q~~~L~~L~~~y~-~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvn 100 (183)
T PRK10606 24 AGNVLLIVNVA--SKCGLTPQYEQLENIQKAWA-DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVN 100 (183)
T ss_pred CCCEEEEEEEe--CCCCCcHHHHHHHHHHHHHh-hCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccC
Confidence 46899999999 999999 77888888885 35799999999654321 2256665 6888888664332
Q ss_pred --cchHhhhhhhHHHHhhhhc
Q psy3889 105 --VADSLNKTLFILIIFFSSI 123 (243)
Q Consensus 105 --~~~~l~~~~f~~~~i~~~~ 123 (243)
+..-|-+ | +...+
T Consensus 101 G~~~~pl~~--~----Lk~~~ 115 (183)
T PRK10606 101 GEGRHPLYQ--K----LIAAA 115 (183)
T ss_pred CCCCCHHHH--H----HHHhC
Confidence 4455777 7 76554
No 121
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.57 E-value=0.0002 Score=60.48 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=22.4
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESS 65 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~ 65 (243)
++++++|.||+ +||++| |.+.++.+..
T Consensus 73 ~gk~vvl~F~a--twCp~C~~~lp~l~~~~~~~ 103 (189)
T TIGR02661 73 PGRPTLLMFTA--PSCPVCDKLFPIIKSIARAE 103 (189)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHhc
Confidence 56899999999 999999 7777776543
No 122
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.50 E-value=0.00046 Score=61.70 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=56.8
Q ss_pred CCceEcC-hhhHHHHhc---cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhh
Q psy3889 21 KGHVSLD-THNFDKILS---KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKR 92 (243)
Q Consensus 21 ~~v~~L~-~~nF~~~v~---~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~ 92 (243)
+.|.+++ ++.|-+.|+ ++.+|+|.||- |-++-| ..+..||..| +.+.|++|... .-. +..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~--~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~-----~~~-~~~~ 193 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYE--PGFPRCEIMNSCLECLARKY---PEVKFVKIRAS-----KCP-ASEN 193 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE---TTSCCHHHHHHHHHHHHHH----TTSEEEEEEEC-----GCC-TTTT
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEe--CCCchHHHHHHHHHHHHHhC---CceEEEEEehh-----ccC-cccC
Confidence 3577885 588999884 34589999999 999999 6777888776 47999999885 222 7789
Q ss_pred cCcc-CceEEEeccchHhhh
Q psy3889 93 GCLT-PQLLWAFCVADSLNK 111 (243)
Q Consensus 93 ~~V~-~PTi~lF~~~~~l~~ 111 (243)
|.+. +|||++|++++-+.+
T Consensus 194 f~~~~LPtllvYk~G~l~~~ 213 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNGDLIGN 213 (265)
T ss_dssp S-TTC-SEEEEEETTEEEEE
T ss_pred CcccCCCEEEEEECCEEEEe
Confidence 9999 999999995544433
No 123
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.43 E-value=0.00051 Score=56.58 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=33.9
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
+++++||.||+ +||+.| |.+.++.+.+. ..++.|..|.++
T Consensus 24 ~~k~~ll~f~~--t~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFIC--NHCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSN 67 (171)
T ss_pred CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHHh-hCCeEEEEEecC
Confidence 67899999999 999999 78888888885 347889999875
No 124
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.34 E-value=0.00055 Score=57.46 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=43.2
Q ss_pred cCCe-EEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc------ccHHH-HhhcCccCceEE
Q psy3889 37 KFHT-TLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER------DNEDL-AKRGCLTPQLLW 101 (243)
Q Consensus 37 ~~k~-vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~------~n~~l-~~~~~V~~PTi~ 101 (243)
.+++ +++.||| +||++| |.++++.+.+++ .++.|.-|++++.++. +...+ +++++++||.+.
T Consensus 39 ~Gk~vvlv~n~a--twCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~ 112 (183)
T PTZ00256 39 KGKKAIIVVNVA--CKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQ 112 (183)
T ss_pred CCCcEEEEEEEC--CCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCce
Confidence 4564 4556688 999999 899999999863 4689999987532211 12233 457888899875
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.34 E-value=0.00046 Score=49.70 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=34.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 43 VKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 43 V~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
|.+++ |+|++||...++.+......++.+--+|.. +.+++ .+|||. .||+.+
T Consensus 3 I~v~~--~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-----~~~~~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 3 IKVFS--PGCPYCPELVQLLKEAAEELGIEVEIIDIE-----DFEEI-EKYGVMSVPALVI 55 (76)
T ss_dssp EEEEC--SSCTTHHHHHHHHHHHHHHTTEEEEEEETT-----THHHH-HHTT-SSSSEEEE
T ss_pred EEEeC--CCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-----CHHHH-HHcCCCCCCEEEE
Confidence 34467 999999766666555433234555444443 56777 999999 999964
No 126
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.33 E-value=0.00097 Score=56.54 Aligned_cols=25 Identities=4% Similarity=-0.112 Sum_probs=22.9
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHH
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAE 63 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~ 63 (243)
.+|.++|+||| .||++| |.++.++.
T Consensus 58 ~GKV~lvn~~A--swc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 58 AGKVRVVHHIA--GRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCCEEEEEEEe--cCCChhhccchHHHHHHH
Confidence 58999999999 999999 99999964
No 127
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.33 E-value=0.00056 Score=56.59 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=43.7
Q ss_pred cCCeEEEEEEecCCC-CCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 37 KFHTTLVKFDIAYPY-GAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 37 ~~k~vlV~FyA~~pW-C~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
.+++++|.||+ .| |++| |.|.++++.+. ++.|.-|++|+ .....++++++++. +|.+
T Consensus 43 ~Gk~vvl~f~~--s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~--~~~~~~f~~~~~~~~~~~l 105 (167)
T PRK00522 43 AGKRKVLNIFP--SIDTGVCATSVRKFNQEAAELD---NTVVLCISADL--PFAQKRFCGAEGLENVITL 105 (167)
T ss_pred CCCEEEEEEEc--CCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC--HHHHHHHHHhCCCCCceEe
Confidence 46799999999 99 8899 88888888872 68888888752 12356788888887 6643
No 128
>KOG2603|consensus
Probab=97.31 E-value=0.0022 Score=58.12 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=73.8
Q ss_pred cCCCceEcChhhHHHHhc-cCC--eEEEEEEecCC--CCCCc----HHHHHHHHHccC------CCCcEEEEEecccCCC
Q psy3889 19 LSKGHVSLDTHNFDKILS-KFH--TTLVKFDIAYP--YGAKH----EAFLEVAESSKH------QPDFLVAEVGVKDYGE 83 (243)
Q Consensus 19 ~~~~v~~L~~~nF~~~v~-~~k--~vlV~FyA~~p--WC~~c----p~~~~lA~~~~~------~~~v~vakVd~~d~~~ 83 (243)
+.++|+.+++++|.+.+. +.+ .++|+|.|-.| -|.-| .+|..+|+.+.. ..++-|+.||.+
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~---- 113 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD---- 113 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc----
Confidence 456899999999999983 222 57888887433 46677 688888887631 225889999997
Q ss_pred cccHHHHhhcCcc-CceEEEec-------------------cchHhhhhhhHHHHhhhhccc
Q psy3889 84 RDNEDLAKRGCLT-PQLLWAFC-------------------VADSLNKTLFILIIFFSSIGI 125 (243)
Q Consensus 84 ~~n~~l~~~~~V~-~PTi~lF~-------------------~~~~l~~~~f~~~~i~~~~g~ 125 (243)
+.+++-++++++ .|++.+|+ .+|++.+ | +...+.+
T Consensus 114 -e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaq--f----v~~~tkv 168 (331)
T KOG2603|consen 114 -ESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQ--F----VADRTKV 168 (331)
T ss_pred -ccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHH--H----HHHhhhh
Confidence 789999999999 99999995 5777888 8 6655543
No 129
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.31 E-value=0.0014 Score=63.43 Aligned_cols=74 Identities=7% Similarity=-0.007 Sum_probs=56.6
Q ss_pred CceEcChhhHHHHhc-cCCeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc-Cc
Q psy3889 22 GHVSLDTHNFDKILS-KFHTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQ 98 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~-~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~P 98 (243)
+-..|++..-+.+-. ..+.-+-.|++ |.|++||.-.+.++.++ ..+++..-.||.. ++++++++|+|. +|
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~--~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-----~~~~~~~~~~v~~VP 171 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVS--LSCHNCPDVVQALNLMAVLNPNITHTMIDGA-----LFQDEVEARNIMAVP 171 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEc--CCCCCcHHHHHHHHHHHHhCCCceEEEEEch-----hCHhHHHhcCCcccC
Confidence 456777777666542 23445777999 99999987666666654 3468888888887 899999999999 99
Q ss_pred eEEE
Q psy3889 99 LLWA 102 (243)
Q Consensus 99 Ti~l 102 (243)
++.+
T Consensus 172 ~~~i 175 (517)
T PRK15317 172 TVFL 175 (517)
T ss_pred EEEE
Confidence 9975
No 130
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.30 E-value=0.00037 Score=53.55 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.8
Q ss_pred cCCeEEEEEEecCC-CCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEE
Q psy3889 37 KFHTTLVKFDIAYP-YGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~p-WC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~ 101 (243)
.+++++|.||+ . ||++| |.+.++...++ ..++.+.-|..++ ......+.+.+++.||.+.
T Consensus 24 ~gk~~vl~f~~--~~~c~~c~~~l~~l~~~~~~~~-~~~~~vi~is~d~--~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 24 KGKPVVLFFWP--TAWCPFCQAELPELNELYKKYK-DKGVQVIGISTDD--PEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp TTSEEEEEEES--TTTSHHHHHHHHHHHHHHHHHH-TTTEEEEEEESSS--HHHHHHHHHHHTCSSEEEE
T ss_pred CCCcEEEEEeC--ccCccccccchhHHHHHhhhhc-cceEEeeeccccc--ccchhhhhhhhcccccccc
Confidence 56899999999 8 99999 88888888886 4578899998862 1134667777776677654
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.28 E-value=0.0011 Score=64.81 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=56.2
Q ss_pred CceEcChhhHHHHhccCCeEEEE-EEecCCCCCCcHHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc-Cc
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVK-FDIAYPYGAKHEAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQ 98 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~-FyA~~pWC~~cp~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~P 98 (243)
+-..|+++.-+.+-.=++++-++ |.+ |||++||.-.+.++.++. .+++..--||+. ++++++++|+|. +|
T Consensus 459 ~~~~l~~~~~~~i~~~~~~~~i~v~~~--~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~-----~~~~~~~~~~v~~vP 531 (555)
T TIGR03143 459 PGQPLGEELLEKIKKITKPVNIKIGVS--LSCTLCPDVVLAAQRIASLNPNVEAEMIDVS-----HFPDLKDEYGIMSVP 531 (555)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEC--CCCCCcHHHHHHHHHHHHhCCCceEEEEECc-----ccHHHHHhCCceecC
Confidence 45677777777665334455444 579 999999987777777653 347888888887 789999999999 99
Q ss_pred eEEE
Q psy3889 99 LLWA 102 (243)
Q Consensus 99 Ti~l 102 (243)
++.+
T Consensus 532 ~~~i 535 (555)
T TIGR03143 532 AIVV 535 (555)
T ss_pred EEEE
Confidence 9974
No 132
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.27 E-value=0.00055 Score=54.59 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=41.7
Q ss_pred CeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 39 HTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 39 k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
++++|.|| + +||+.| |.+.++.+.++ ..++.+.-|+.++ ......+++++++.||.+
T Consensus 29 k~~vl~f~~~--~~c~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~--~~~~~~~~~~~~~~~~~~ 90 (149)
T cd03018 29 KPVVLVFFPL--AFTPVCTKELCALRDSLELFE-AAGAEVLGISVDS--PFSLRAWAEENGLTFPLL 90 (149)
T ss_pred CeEEEEEeCC--CCCccHHHHHHHHHHHHHHHH-hCCCEEEEecCCC--HHHHHHHHHhcCCCceEe
Confidence 78888887 8 999999 78888888885 3578888888752 112356677777667753
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.24 E-value=0.00082 Score=47.31 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=32.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhh-----cCcc-CceEEEec
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKR-----GCLT-PQLLWAFC 104 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~-----~~V~-~PTi~lF~ 104 (243)
++.|++ +||++|.....+.... .+.+-.+|++ ++...... +++. +||+. |.
T Consensus 2 v~ly~~--~~C~~C~~~~~~L~~~----~~~~~~idi~-----~~~~~~~~~~~~~~~~~~vP~i~-~~ 58 (77)
T TIGR02200 2 ITVYGT--TWCGYCAQLMRTLDKL----GAAYEWVDIE-----EDEGAADRVVSVNNGNMTVPTVK-FA 58 (77)
T ss_pred EEEEEC--CCChhHHHHHHHHHHc----CCceEEEeCc-----CCHhHHHHHHHHhCCCceeCEEE-EC
Confidence 567999 9999995555444443 2345578876 34444444 3888 99984 43
No 134
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.23 E-value=0.0013 Score=51.65 Aligned_cols=59 Identities=10% Similarity=0.002 Sum_probs=46.6
Q ss_pred ccCCeEEEEEEecCC----CCCCc------HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 36 SKFHTTLVKFDIAYP----YGAKH------EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 36 ~~~k~vlV~FyA~~p----WC~~c------p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
...|.++|.+|+ | ||..| |.+.+.-+ .++++...|++ ..+...++..++++ ||++.+..
T Consensus 15 ~e~K~llVylhs--~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~---~~eg~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 15 QELRFLLVYLHG--DDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVA---KPEGYRVSQALRERTYPFLAMIM 84 (116)
T ss_pred hhCCEEEEEEeC--CCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecC---ChHHHHHHHHhCCCCCCEEEEEE
Confidence 578899999999 8 77777 55544432 37889999986 33568899999999 99999883
No 135
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.23 E-value=0.0016 Score=53.33 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCceEcChhhHHHHhccCCe-EEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCc
Q psy3889 21 KGHVSLDTHNFDKILSKFHT-TLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCL 95 (243)
Q Consensus 21 ~~v~~L~~~nF~~~v~~~k~-vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V 95 (243)
+.+.++|+.|+..+.+.+.+ +++-|+. .-.... ..+..+|..+.+ .+.|+.+|++ .++++++.+|+
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~-----~~~~~~~~~~i 147 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDN--KDNESTEAFKKELQDIAKKFKG--KINFVYVDAD-----DFPRLLKYFGI 147 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEET--TTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETT-----TTHHHHHHTTT
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEc--CCchhHHHHHHHHHHHHHhcCC--eEEEEEeehH-----HhHHHHHHcCC
Confidence 45899999999999977765 6666664 322222 677788888754 7999999997 67889999999
Q ss_pred c---CceEEEec
Q psy3889 96 T---PQLLWAFC 104 (243)
Q Consensus 96 ~---~PTi~lF~ 104 (243)
+ +|++.++.
T Consensus 148 ~~~~~P~~vi~~ 159 (184)
T PF13848_consen 148 DEDDLPALVIFD 159 (184)
T ss_dssp TTSSSSEEEEEE
T ss_pred CCccCCEEEEEE
Confidence 7 99999887
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.23 E-value=0.00083 Score=53.17 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=38.5
Q ss_pred CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 38 FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
.+.+|+.|++ +||+.| |.+.++.+.+. ..++.+.-|+.++ ......+.+++++.||.+
T Consensus 24 ~~~vl~f~~~--~~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~--~~~~~~~~~~~~~~~p~~ 85 (149)
T cd02970 24 GPVVVVFYRG--FGCPFCREYLRALSKLLPELD-ALGVELVAVGPES--PEKLEAFDKGKFLPFPVY 85 (149)
T ss_pred CCEEEEEECC--CCChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCC--HHHHHHHHHhcCCCCeEE
Confidence 3344444458 999999 88888888885 3468888888762 112234566666667743
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.21 E-value=0.0017 Score=56.32 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=48.3
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCC------CcccHHHHhhcCcc-CceEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYG------ERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~------~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
..++-|+-||. +.|++| |++..+++.+ .+.+.-|++|..+ ...+..++++++|. +|++++..
T Consensus 119 a~~~gL~~F~~--~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 119 AQKYGLFFFYR--SDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred hhCeEEEEEEc--CCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 46788999999 999999 8888888887 4666677664100 01358899999999 99999876
No 138
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.16 E-value=0.0036 Score=46.32 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=53.9
Q ss_pred EcCh-hhHHHHhccCCeEEEEEEecCCCCCCc-HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEEE
Q psy3889 25 SLDT-HNFDKILSKFHTTLVKFDIAYPYGAKH-EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLWA 102 (243)
Q Consensus 25 ~L~~-~nF~~~v~~~k~vlV~FyA~~pWC~~c-p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~l 102 (243)
+++. +..++.+...+.++|-|+. ++|+.. ..|.++|+.+.. ++.|+.+. +.++++++++.-|++.+
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~--~~~~~~~~~f~~~A~~~r~--~~~F~~~~--------~~~~~~~~~~~~~~i~l 70 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFK--DEESEEYKTFEKVAESLRD--DYGFGHTS--------DKEVAKKLKVKPGSVVL 70 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEEC--CCCcHHHHHHHHHHHhccc--CCeEEEEC--------hHHHHHHcCCCCCceEE
Confidence 4444 3455667888999999999 999877 999999998854 57787763 46788888877899999
Q ss_pred ecc
Q psy3889 103 FCV 105 (243)
Q Consensus 103 F~~ 105 (243)
|++
T Consensus 71 ~~~ 73 (97)
T cd02981 71 FKP 73 (97)
T ss_pred eCC
Confidence 974
No 139
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.12 E-value=0.0015 Score=51.54 Aligned_cols=60 Identities=15% Similarity=-0.030 Sum_probs=42.0
Q ss_pred cCCeEEEEEEecCCCCCC-c----HHHHHHHHHccCC--CCcEEEEEecccC-CC-cccHHHHhhcCccCc
Q psy3889 37 KFHTTLVKFDIAYPYGAK-H----EAFLEVAESSKHQ--PDFLVAEVGVKDY-GE-RDNEDLAKRGCLTPQ 98 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~-c----p~~~~lA~~~~~~--~~v~vakVd~~d~-~~-~~n~~l~~~~~V~~P 98 (243)
.+++++|.||+ +||+. | |.+.++...+... .++.+.-|.++.- +. ....+.+++++..+|
T Consensus 21 ~gk~~vl~f~~--~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~ 89 (142)
T cd02968 21 KGKPVLVYFGY--THCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWI 89 (142)
T ss_pred CCCEEEEEEEc--CCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 56899999999 99998 9 7888888888543 2588888887521 11 113456666664455
No 140
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.11 E-value=0.0013 Score=52.17 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=41.5
Q ss_pred cCCeEEEEEEecCCC-CCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceE
Q psy3889 37 KFHTTLVKFDIAYPY-GAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLL 100 (243)
Q Consensus 37 ~~k~vlV~FyA~~pW-C~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi 100 (243)
.++++++.||+ .| |++| |.+.++.+.+. ++.|.-|+.++ .....+..+++++. +|.+
T Consensus 25 ~gk~vvl~f~~--~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~--~~~~~~~~~~~~~~~~~~l 87 (143)
T cd03014 25 AGKVKVISVFP--SIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL--PFAQKRWCGAEGVDNVTTL 87 (143)
T ss_pred CCCeEEEEEEc--CCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC--HHHHHHHHHhcCCCCceEe
Confidence 46799999999 99 5889 78888887763 68888888852 11235666777775 7743
No 141
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.07 E-value=0.0012 Score=51.85 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=42.1
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
.+++++|.|| + .||+.| |.+.++...+. ..++.+..|..++ .....++++++++.||.+
T Consensus 22 ~gk~~ll~f~~~--~~cp~C~~~~~~l~~~~~~~~-~~~~~vv~is~d~--~~~~~~~~~~~~~~~~~l 85 (140)
T cd03017 22 RGKPVVLYFYPK--DDTPGCTKEACDFRDLYEEFK-ALGAVVIGVSPDS--VESHAKFAEKYGLPFPLL 85 (140)
T ss_pred CCCcEEEEEeCC--CCCCchHHHHHHHHHHHHHHH-HCCCEEEEEcCCC--HHHHHHHHHHhCCCceEE
Confidence 3689999999 6 789999 77777877775 3568888887752 223356667777777743
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.88 E-value=0.0025 Score=50.95 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=44.0
Q ss_pred EcChhhHHHHh-ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc---Ccc
Q psy3889 25 SLDTHNFDKIL-SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG---CLT 96 (243)
Q Consensus 25 ~L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~---~V~ 96 (243)
.++++.-..+- ...+..++-|.. +|||.| |.+.++|+.. +++.+--+.-| +|.++..+| |..
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e--~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd-----~~~el~~~~lt~g~~ 96 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITE--TWCGDCARNVPVLAKIAEAN---PNIEVRIILRD-----ENKELMDQYLTNGGR 96 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE----TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HH-----HHHHHTTTTTT-SS-
T ss_pred CCCHHHHHHHHhcCCCcEEEEEEC--CCchhHHHHHHHHHHHHHhC---CCCeEEEEEec-----CChhHHHHHHhCCCe
Confidence 34444444433 234456666888 999999 9999999974 35555555554 678888776 456
Q ss_pred -CceEEEec-cchHhhh
Q psy3889 97 -PQLLWAFC-VADSLNK 111 (243)
Q Consensus 97 -~PTi~lF~-~~~~l~~ 111 (243)
+||++++. +.+.+-.
T Consensus 97 ~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 97 SIPTFIFLDKDGKELGR 113 (129)
T ss_dssp -SSEEEEE-TT--EEEE
T ss_pred ecCEEEEEcCCCCEeEE
Confidence 99999985 4455545
No 143
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.87 E-value=0.0024 Score=50.09 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=41.8
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc-CccCceE
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG-CLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~-~V~~PTi 100 (243)
.+++++|.|| + .||+.| |.+.++.+.++ ..++.|..|..++ .......++++ +.+||.+
T Consensus 21 ~gk~~ll~f~~~--~~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d~--~~~~~~~~~~~~~~~~~~l 85 (140)
T cd02971 21 KGKWVVLFFYPK--DFTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVDS--PFSHKAWAEKEGGLNFPLL 85 (140)
T ss_pred CCCeEEEEEeCC--CCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC--HHHHHHHHhcccCCCceEE
Confidence 6789999999 6 899999 78888888874 3478888888752 12335566666 4337743
No 144
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.86 E-value=0.007 Score=58.66 Aligned_cols=75 Identities=8% Similarity=-0.030 Sum_probs=56.9
Q ss_pred CceEcChhhHHHHhc-cCCeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc-Cc
Q psy3889 22 GHVSLDTHNFDKILS-KFHTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQ 98 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~-~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~P 98 (243)
+-..|++.+-+.+-. ..+.-+--|++ |-|++||.-.+.++.++ ..+++..-.+|.. .+++++++|+|. +|
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~--~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~-----~~~~~~~~~~v~~VP 172 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVS--LTCQNCPDVVQALNQMALLNPNISHTMIDGA-----LFQDEVEALGIQGVP 172 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEe--CCCCCCHHHHHHHHHHHHhCCCceEEEEEch-----hCHHHHHhcCCcccC
Confidence 457788777776542 23445667999 99999987666666664 3468887788876 899999999999 99
Q ss_pred eEEEe
Q psy3889 99 LLWAF 103 (243)
Q Consensus 99 Ti~lF 103 (243)
++.+=
T Consensus 173 ~~~i~ 177 (515)
T TIGR03140 173 AVFLN 177 (515)
T ss_pred EEEEC
Confidence 99753
No 145
>KOG3425|consensus
Probab=96.80 E-value=0.0057 Score=48.24 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=50.4
Q ss_pred hhhHHHHh---ccCCeEEEEEEecC------CCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc--ccHHHHhh
Q psy3889 28 THNFDKIL---SKFHTTLVKFDIAY------PYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER--DNEDLAKR 92 (243)
Q Consensus 28 ~~nF~~~v---~~~k~vlV~FyA~~------pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~--~n~~l~~~ 92 (243)
-+.|++.+ .+++.++|.|++.- ||||.| |++.+.-+.. ..++.|..|++-+-.-. .+..+-..
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a--p~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA--PEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC--CCceEEEEEEecCCCcccCCCCccccC
Confidence 35677765 35667999999866 799999 8888777654 34788888887421100 12344455
Q ss_pred cCc-c-CceEEEec
Q psy3889 93 GCL-T-PQLLWAFC 104 (243)
Q Consensus 93 ~~V-~-~PTi~lF~ 104 (243)
.++ . +||++=|.
T Consensus 90 ~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 90 PGILTAVPTLLRWK 103 (128)
T ss_pred CCceeecceeeEEc
Confidence 556 6 89988765
No 146
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.80 E-value=0.0026 Score=53.62 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=33.0
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+++++|.|| + .||+.| |.|.++.+.|+. .++.+.-|.++
T Consensus 30 ~Gk~vvl~F~p~--~~cp~C~~el~~l~~~~~~~~~-~gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPA--DFTFVCPTELEDLADKYAELKK-LGVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECC--CcCCcCHHHHHHHHHHHHHHHh-cCCcEEEEeCC
Confidence 4679999999 8 999999 888888888853 46778888875
No 147
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.73 E-value=0.0061 Score=44.47 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCC-CCcEEEEEecccCCCcccHHHHhhcC--cc-CceEEEec----cchHhhh
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQ-PDFLVAEVGVKDYGERDNEDLAKRGC--LT-PQLLWAFC----VADSLNK 111 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~-~~v~vakVd~~d~~~~~n~~l~~~~~--V~-~PTi~lF~----~~~~l~~ 111 (243)
++.|+. |||++|..-.++-+.+... .++.+..+|++. +.....++...++ +. +|++.+=. ..++|.+
T Consensus 3 v~iy~~--~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 3 VVIFGR--PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEeC--CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 567888 9999994333333333211 368888998862 1112345666555 47 99986311 5566666
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.73 E-value=0.0055 Score=42.12 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=33.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
++.|++ +||++|.....+.... ++.+..+|++. +.....++.+..++. +|++.+..
T Consensus 2 v~l~~~--~~c~~c~~~~~~l~~~----~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTK--PDCPYCKATKRFLDER----GIPFEEVDVDE-DPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeC--CCChhHHHHHHHHHHC----CCCeEEEeCCC-CHHHHHHHHHHcCCcccCEEEECC
Confidence 467899 9999995444443332 45667777751 111112344444678 99998643
No 149
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.71 E-value=0.0036 Score=50.46 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=42.2
Q ss_pred cCCeEEEEEEecCC-CCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 37 KFHTTLVKFDIAYP-YGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~FyA~~p-WC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
++++++|.||+ . ||+.| |.+.++.+.++. .++.+.-|+.++ .....+.+++++++||.+
T Consensus 29 ~gk~~ll~f~~--~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~--~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 29 QGQRVLVYFYP--KAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK--PEKLSRFAEKELLNFTLL 92 (154)
T ss_pred CCCCEEEEEEC--CCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC--HHHHHHHHHHhCCCCeEE
Confidence 56789999997 6 56679 678888888853 468888888752 223466777777777743
No 150
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.64 E-value=0.0047 Score=44.15 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=35.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++.|++ +||++|....++-+.+.- .+.+..++.++.+......+.+.+|+. +|++.
T Consensus 2 v~~y~~--~~Cp~C~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 2 VVVFSK--SYCPYCKRAKSLLKELGV--KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEEc--CCCHHHHHHHHHHHHcCC--CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 467899 999999666665555532 466777776521110123466777888 99974
No 151
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.61 E-value=0.0051 Score=50.86 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=33.6
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+++++|.|| + .||++| |.+.++.+.|+. .++.+.-|.++
T Consensus 28 ~Gk~vvl~F~~~--~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d 72 (173)
T cd03015 28 KGKWVVLFFYPL--DFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTD 72 (173)
T ss_pred CCCEEEEEEECC--CCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 4589999999 7 999999 889999999863 57888888875
No 152
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.57 E-value=0.0052 Score=52.10 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=41.2
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhh----cCccCceE
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKR----GCLTPQLL 100 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~----~~V~~PTi 100 (243)
.+++|++.|| + .||+.| |.|.++..+|. ..++.+.-|++|+ ...+..+++. .++.||.+
T Consensus 30 ~Gk~vvL~F~P~--~~~p~C~~el~~l~~~~~~f~-~~g~~vigIS~D~--~~~~~a~~~~~~~~~~l~fpll 97 (187)
T PRK10382 30 EGRWSVFFFYPA--DFTFVCPTELGDVADHYEELQ-KLGVDVYSVSTDT--HFTHKAWHSSSETIAKIKYAMI 97 (187)
T ss_pred CCCeEEEEEECC--CCCCcCHHHHHHHHHHHHHHH-hCCCEEEEEeCCC--HHHHHHHHHhhccccCCceeEE
Confidence 4679999999 8 999999 78888888885 3468888888862 1123445543 24446644
No 153
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.54 E-value=0.014 Score=45.17 Aligned_cols=79 Identities=10% Similarity=-0.080 Sum_probs=58.8
Q ss_pred ceEcChhhHHHHhccCCeEEEEEEecCCCCCC--cHHHHHHHHH---ccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 23 HVSLDTHNFDKILSKFHTTLVKFDIAYPYGAK--HEAFLEVAES---SKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 23 v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~--cp~~~~lA~~---~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
|.++|.+|+..+.+.+.+..+.|+. |---. -+.+.++|+. +++ .+.|+-+|.+ ......+.||++
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~-----~~~~~~~~fgl~~ 71 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG--AINFLTADGD-----KFRHPLLHLGKTP 71 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc--eEEEEEEech-----HhhhHHHHcCCCH
Confidence 5678999999888666665555665 43222 2899999999 865 6999999997 444488999999
Q ss_pred --CceEEEeccchHhhh
Q psy3889 97 --PQLLWAFCVADSLNK 111 (243)
Q Consensus 97 --~PTi~lF~~~~~l~~ 111 (243)
+|++.+... ++..+
T Consensus 72 ~~~P~i~i~~~-~~~~K 87 (111)
T cd03072 72 ADLPVIAIDSF-RHMYL 87 (111)
T ss_pred hHCCEEEEEcc-hhcCc
Confidence 999998864 44445
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.48 E-value=0.0029 Score=49.98 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=44.0
Q ss_pred hhHHHHh----ccCCeEEEEEEec-----CCCCCCc----HHHHHHHHHccCCCCcEEEEEeccc---CCCcccHHHHh-
Q psy3889 29 HNFDKIL----SKFHTTLVKFDIA-----YPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKD---YGERDNEDLAK- 91 (243)
Q Consensus 29 ~nF~~~v----~~~k~vlV~FyA~-----~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d---~~~~~n~~l~~- 91 (243)
++|.+.+ .+++.++|.|++. -+|||.| |..++.-.... .+..++.|.+-+ +.+. +..+-.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp-~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDP-NNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-T-TSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCC-CCCceEc
Confidence 4666666 3567999999862 2599999 76666555532 356666665522 2222 223444
Q ss_pred -hcCcc-CceEEEeccchHhh
Q psy3889 92 -RGCLT-PQLLWAFCVADSLN 110 (243)
Q Consensus 92 -~~~V~-~PTi~lF~~~~~l~ 110 (243)
+++|+ +||++-|.+.+.|.
T Consensus 83 p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp -CC---SSSEEEECTSS-EEE
T ss_pred ceeeeeecceEEEECCCCccc
Confidence 69999 99999887544333
No 155
>KOG1672|consensus
Probab=96.38 E-value=0.0062 Score=51.85 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=62.3
Q ss_pred ceEcC-hhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-
Q psy3889 23 HVSLD-THNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT- 96 (243)
Q Consensus 23 v~~L~-~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~- 96 (243)
..++. +..|=+.+.++.-|++.||- |--..| .-++.||..+ -...|.+||+. ..+-|+.+.+|.
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~--~~f~RCKimDkhLe~LAk~h---~eTrFikvnae-----~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYR--PEFFRCKIMDKHLEILAKRH---VETRFIKVNAE-----KAPFLVTKLNIKV 137 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEc--CCCcceehHHHHHHHHHHhc---ccceEEEEecc-----cCceeeeeeeeeE
Confidence 44444 77888888788899999999 988889 5666666654 35789999996 668899999999
Q ss_pred CceEEEec---cchHhhh
Q psy3889 97 PQLLWAFC---VADSLNK 111 (243)
Q Consensus 97 ~PTi~lF~---~~~~l~~ 111 (243)
+||+.+|+ ..+-++-
T Consensus 138 LP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVG 155 (211)
T ss_pred eeeEEEEEcCEEEEEEee
Confidence 99999998 3444555
No 156
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.30 E-value=0.014 Score=51.93 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=46.7
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCC------cccHHHHhhcCcc-CceEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGE------RDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~------~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
..++-|+-||. +-|++| |+...+++.+ .+.+.-|++|.-+. ..+..+++++||. +|++++..
T Consensus 149 a~~~gL~fFy~--~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 149 SQSYGLFFFYR--GKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred HhceeEEEEEC--CCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 45689999999 999999 8888888877 46677777751110 0135688999999 99999764
No 157
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.30 E-value=0.024 Score=41.70 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=43.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCc--c-CceEEEec----cchHhhhhh
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCL--T-PQLLWAFC----VADSLNKTL 113 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V--~-~PTi~lF~----~~~~l~~~~ 113 (243)
++.|.. |||++|..-.++.+.+.- .+.+.+..+|++. +.....++.+.++- . +|++++=. ..++|.+
T Consensus 2 V~vys~--~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~-~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~-- 76 (86)
T TIGR02183 2 VVIFGR--PGCPYCVRAKQLAEKLAIERADFEFRYIDIHA-EGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ-- 76 (86)
T ss_pred EEEEeC--CCCccHHHHHHHHHHhCcccCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH--
Confidence 456777 999999655555555432 2357788888852 11123457777774 6 99995422 5677777
Q ss_pred h
Q psy3889 114 F 114 (243)
Q Consensus 114 f 114 (243)
+
T Consensus 77 ~ 77 (86)
T TIGR02183 77 L 77 (86)
T ss_pred H
Confidence 7
No 158
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.27 E-value=0.066 Score=42.68 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=54.3
Q ss_pred CceEcChhhH-HHHhccCCeEEEEEEecCCC---CCC-c-----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh
Q psy3889 22 GHVSLDTHNF-DKILSKFHTTLVKFDIAYPY---GAK-H-----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK 91 (243)
Q Consensus 22 ~v~~L~~~nF-~~~v~~~k~vlV~FyA~~pW---C~~-c-----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~ 91 (243)
.+++|+..++ ++.-.+...-+|.|. |- |.. + ..+.++|+.|++ ..+.|+-+|.+ ++..+.+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l---~~~~d~~~e~~~~~~~~l~~vAk~~kg-k~i~Fv~vd~~-----~~~~~~~ 73 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFL---PHILDCQASCRNKYLEILKSVAEKFKK-KPWGWLWTEAG-----AQLDLEE 73 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEc---CccccCCHHHHHHHHHHHHHHHHHhcC-CcEEEEEEeCc-----ccHHHHH
Confidence 5788887666 444445566666664 53 322 2 799999999975 22999999997 5666999
Q ss_pred hcCcc---CceEEEec
Q psy3889 92 RGCLT---PQLLWAFC 104 (243)
Q Consensus 92 ~~~V~---~PTi~lF~ 104 (243)
.|||. +|++.++.
T Consensus 74 ~fgl~~~~~P~v~i~~ 89 (130)
T cd02983 74 ALNIGGFGYPAMVAIN 89 (130)
T ss_pred HcCCCccCCCEEEEEe
Confidence 99995 99999886
No 159
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.27 E-value=0.0086 Score=40.65 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++.|.. |||++|....++-+.. ++.+-.+|+++ ++....++.+..|.. +|++.+
T Consensus 1 V~vy~~--~~C~~C~~~~~~L~~~----~i~y~~~dv~~-~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTK--PGCPYCKKAKEFLDEK----GIPYEEVDVDE-DEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEES--TTSHHHHHHHHHHHHT----TBEEEEEEGGG-SHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEc--CCCcCHHHHHHHHHHc----CCeeeEccccc-chhHHHHHHHHcCCCccCEEEE
Confidence 466888 9999997666665554 47788888862 112335566666989 999975
No 160
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.23 E-value=0.017 Score=42.07 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEEEe
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLWAF 103 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~lF 103 (243)
|+.|.. |.|+.|.....+-.....+..+.+-.||++ .++++..+|+.++|.+.+=
T Consensus 2 l~l~~k--~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~-----~d~~l~~~Y~~~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTK--PGCHLCDEAKEILEEVAAEFPFELEEVDID-----EDPELFEKYGYRIPVLHID 56 (81)
T ss_dssp EEEEE---SSSHHHHHHHHHHHHCCTTSTCEEEEEETT-----TTHHHHHHSCTSTSEEEET
T ss_pred EEEEcC--CCCChHHHHHHHHHHHHhhcCceEEEEECC-----CCHHHHHHhcCCCCEEEEc
Confidence 567888 999999655555555544567999999997 7888999999779997743
No 161
>KOG0911|consensus
Probab=96.16 E-value=0.0029 Score=54.91 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred hhhHHHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 28 THNFDKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 28 ~~nF~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
...| ..++.+..++.||+ +||..| .+++.+++.+ .++.+++++.+ ..++++..+.|. .|++.+
T Consensus 9 ~~~f--~~~~~~~~~~~f~a--~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~-----~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 9 QEQF--LDQKGKLLVLHFWA--IWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAE-----EFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred HHHH--HHhccchhhhhhhh--hhhhhhhhHHHHHHHHHHhh---hhheeeeehhh-----hhhHHHHHHHHhcCceeee
Confidence 3455 33578899999999 999999 5777777766 47999999997 899999999999 999999
Q ss_pred ec
Q psy3889 103 FC 104 (243)
Q Consensus 103 F~ 104 (243)
|.
T Consensus 77 ~~ 78 (227)
T KOG0911|consen 77 FF 78 (227)
T ss_pred ee
Confidence 96
No 162
>KOG3414|consensus
Probab=95.95 E-value=0.034 Score=44.31 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred hHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 30 NFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 30 nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
.-++.| ...+.|++.|-- .|-+.| ..+.+.|+...+ -.+++-||++ +-+++.+-|++. .||+.+
T Consensus 13 ~VdqaI~~t~~rlvViRFGr--~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylvdid-----eV~~~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGR--DWDPTCMKMDELLSSIAEDVSN--FAVIYLVDID-----EVPDFVKMYELYDPPTVMF 83 (142)
T ss_pred HHHHHHhcccceEEEEEecC--CCCchHhhHHHHHHHHHHHHhh--ceEEEEEecc-----hhhhhhhhhcccCCceEEE
Confidence 344555 567899999999 999999 677888887754 4678888987 789999999999 999998
Q ss_pred ec
Q psy3889 103 FC 104 (243)
Q Consensus 103 F~ 104 (243)
|-
T Consensus 84 Ff 85 (142)
T KOG3414|consen 84 FF 85 (142)
T ss_pred EE
Confidence 84
No 163
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.89 E-value=0.035 Score=49.24 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=45.4
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc------ccHHHHhhcCcc-CceEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER------DNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~------~n~~l~~~~~V~-~PTi~lF~ 104 (243)
..++-|+-||. +-|++| |+...+++.+ .+.+.-|++|.-+.. .+...+++++|. +|++++..
T Consensus 142 a~~~GL~fFy~--s~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 142 AEHYGLMFFYR--GQDPIDGQLAQVINDFRDTY----GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred HhcceEEEEEC--CCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 35689999999 999999 8888888887 455666666421111 134567899999 99988764
No 164
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.89 E-value=0.027 Score=40.55 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec----cchHhhh
Q psy3889 40 TTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC----VADSLNK 111 (243)
Q Consensus 40 ~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~----~~~~l~~ 111 (243)
.-++.|.. |||++|..-.++-+.. ++.+-.+|++. +....++....|.. +|++.+=. ..++|.+
T Consensus 8 ~~V~ly~~--~~Cp~C~~ak~~L~~~----gi~y~~idi~~--~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 8 ESVVVFTK--PGCPFCAKAKATLKEK----GYDFEEIPLGN--DARGRSLRAVTGATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCEEEEEC--CCCHhHHHHHHHHHHc----CCCcEEEECCC--ChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHH
Confidence 34566888 9999996555555443 45566777752 11235666777888 99996422 3455555
No 165
>KOG2501|consensus
Probab=95.85 E-value=0.016 Score=47.82 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=27.4
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccC-CCCcEEEEEecc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH-QPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~-~~~v~vakVd~~ 79 (243)
.++.|.+.|-| -||++| |...++-++.+. ...+-|.=|+-|
T Consensus 32 ~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 32 QGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred CCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 56899999999 999999 655555555432 224555555543
No 166
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.78 E-value=0.039 Score=42.76 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCCceEcChhhHHHHhccCCeEEEEEEecCCCCCCc-------HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhh
Q psy3889 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKH-------EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKR 92 (243)
Q Consensus 20 ~~~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~c-------p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~ 92 (243)
..+...++.++++..+......++ |.+ .-|.-+ =++-++.+.|.+ .+..+-|+-. ....|+.+
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vl-f~~--gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~-----~e~~L~~r 77 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVL-FFA--GDPARFPETADVAVILPELVKAFPG--RFRGAVVARA-----AERALAAR 77 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEE-EES--S-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHH-----HHHHHHHH
T ss_pred hcCCeeechhhHHHHHhCCCcEEE-EEC--CCCCcCcccccceeEcHHHHHhhhC--ccceEEECch-----hHHHHHHH
Confidence 347888999999999966555544 555 333333 255566666654 5666777643 67899999
Q ss_pred cCcc-CceEEEec
Q psy3889 93 GCLT-PQLLWAFC 104 (243)
Q Consensus 93 ~~V~-~PTi~lF~ 104 (243)
||+. +|++.+|+
T Consensus 78 ~gv~~~PaLvf~R 90 (107)
T PF07449_consen 78 FGVRRWPALVFFR 90 (107)
T ss_dssp HT-TSSSEEEEEE
T ss_pred hCCccCCeEEEEE
Confidence 9999 99999998
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.57 E-value=0.035 Score=37.71 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++.|++ +||++|.....+-+.. ++.+-.+|++.. .....++.+..+.. +|++.
T Consensus 2 v~ly~~--~~Cp~C~~~~~~L~~~----~i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSK--STCPYCKRAKRLLESL----GIEFEEIDILED-GELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEEC--CCCHHHHHHHHHHHHc----CCcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE
Confidence 456888 9999996555555444 366778888621 11234556667777 99884
No 168
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.47 E-value=0.03 Score=47.77 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.7
Q ss_pred eEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 40 TTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 40 ~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+|+.|++ .||+.| |.|.++.++|+. .++.+.-|+++
T Consensus 28 vvlf~~pa--~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D 68 (203)
T cd03016 28 GILFSHPA--DFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVD 68 (203)
T ss_pred EEEEEecC--CCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECC
Confidence 44567888 999999 788888888853 46888888886
No 169
>PRK15000 peroxidase; Provisional
Probab=95.45 E-value=0.037 Score=47.29 Aligned_cols=40 Identities=20% Similarity=0.031 Sum_probs=33.4
Q ss_pred cCCeEEEEEEecCC-CCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFDIAYP-YGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~FyA~~p-WC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
+++++++.||+ . ||+.| |.|.++.++|+. .++.|.-|.+|
T Consensus 33 ~gk~vvL~F~p--~~~t~vC~~El~~l~~~~~~f~~-~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWP--MDFTFVCPSELIAFDKRYEEFQK-RGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEEC--CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Confidence 56899999997 6 89999 789999998863 47888889886
No 170
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.35 E-value=0.036 Score=42.01 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHhccCCeEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccH----HHHhhcCcc-CceEE
Q psy3889 33 KILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNE----DLAKRGCLT-PQLLW 101 (243)
Q Consensus 33 ~~v~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~----~l~~~~~V~-~PTi~ 101 (243)
+.|++++ ++.|.. ||||+|-.-.++-+.. ++.+..+|++.. .... .+.+..|.+ +|+++
T Consensus 3 ~~i~~~~--Vvvysk--~~Cp~C~~ak~~L~~~----~i~~~~vdid~~--~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 3 RMVSEKA--VVIFSR--SSCCMCHVVKRLLLTL----GVNPAVHEIDKE--PAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred hhhccCC--EEEEEC--CCCHHHHHHHHHHHHc----CCCCEEEEcCCC--ccHHHHHHHHHHhcCCCCcCeEE
Confidence 3454544 445888 9999995555554444 233445555421 1222 344445677 99984
No 171
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.28 E-value=0.03 Score=39.94 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 43 VKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 43 V~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
+.|.. |||++|..-..+-+.. ++.+-.+|++. +.....++.+..+.. +|++.
T Consensus 2 ~ly~~--~~Cp~C~~a~~~L~~~----~i~~~~~di~~-~~~~~~~~~~~~g~~~vP~i~ 54 (79)
T TIGR02181 2 TIYTK--PYCPYCTRAKALLSSK----GVTFTEIRVDG-DPALRDEMMQRSGRRTVPQIF 54 (79)
T ss_pred EEEec--CCChhHHHHHHHHHHc----CCCcEEEEecC-CHHHHHHHHHHhCCCCcCEEE
Confidence 45777 9999996655555544 35566666641 111234556666777 99984
No 172
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.19 E-value=0.045 Score=48.88 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=32.1
Q ss_pred cCCeEEEEEE-ecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFD-IAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~Fy-A~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
+++++++.|| + .||+.| |.|.++.++|+ ..++.+.-|.+|
T Consensus 97 kgk~vVL~FyPa--~ftpvCt~El~~l~~~~~ef~-~~gv~VigIS~D 141 (261)
T PTZ00137 97 KDSYGLLVFYPL--DFTFVCPSELLGFSERLKEFE-ERGVKVLGVSVD 141 (261)
T ss_pred CCCeEEEEEECC--CCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECC
Confidence 4567888888 7 999999 88998988885 346888888886
No 173
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.19 E-value=0.053 Score=46.25 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=30.5
Q ss_pred cCCeEEE-EEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLV-KFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV-~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.++++++ .|++ .||+.| |.|.++.++|+. .++.+.-|+++
T Consensus 26 ~gk~vvL~~~p~--~~cp~C~~El~~l~~~~~~f~~-~~~~vi~vS~D 70 (202)
T PRK13190 26 KGKWVLLFSHPA--DFTPVCTTEFIAFSRRYEDFKK-LGVELVGLSVD 70 (202)
T ss_pred CCCEEEEEEEcC--CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4566655 6788 999999 788888888853 46888888876
No 174
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.17 E-value=0.039 Score=47.71 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=31.9
Q ss_pred cCCe-EEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHT-TLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~-vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+++ ||+.|++ .||+.| |.|.++..+|+. .++.+.-|++|
T Consensus 27 ~Gk~vVL~~~pa--~~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D 71 (215)
T PRK13599 27 AGKWFVLFSHPA--DFTPVCTTEFVEFARKANDFKE-LNTELIGLSVD 71 (215)
T ss_pred CCCeEEEEEeCC--CCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 3455 4678888 999999 889999888853 46888889886
No 175
>PHA03050 glutaredoxin; Provisional
Probab=94.96 E-value=0.082 Score=40.85 Aligned_cols=65 Identities=8% Similarity=-0.016 Sum_probs=36.6
Q ss_pred HHHhccCCeEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCC--cccHHHHhhcCcc-CceEE
Q psy3889 32 DKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGE--RDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 32 ~~~v~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~--~~n~~l~~~~~V~-~PTi~ 101 (243)
++.+++++ ++.|.. ||||+|..-.++-+...-.. -.+-.+|+++.+. .....+.+..|.+ +|+++
T Consensus 7 ~~~i~~~~--V~vys~--~~CPyC~~ak~~L~~~~i~~-~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 7 QQRLANNK--VTIFVK--FTCPFCRNALDILNKFSFKR-GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred HHHhccCC--EEEEEC--CCChHHHHHHHHHHHcCCCc-CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence 34555544 455888 99999965555555542111 1344555542111 1134566667878 99995
No 176
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.89 E-value=0.052 Score=46.91 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=31.2
Q ss_pred cCCeEEE-EEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLV-KFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV-~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.++++++ .|++ .||+.| |.|.+++.+|+. .++.+.-|++|
T Consensus 32 ~GK~vvLff~pa--~ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~D 76 (215)
T PRK13191 32 KGRWFVLFSHPG--DFTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVD 76 (215)
T ss_pred CCCcEEEEEeCC--CCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Confidence 4555554 7777 999999 889999998853 46888888886
No 177
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.73 E-value=0.12 Score=39.72 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=49.3
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCc---HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKH---EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~c---p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
+...|.+++...+.|||.|.. +--... ..|.++|++.++ .-+++-|||. +.+.+.||+++.|.
T Consensus 8 d~KdfKKLLRTr~NVLvLy~k--s~k~a~~~Lk~~~~~A~~vkG--~gT~~~vdCg---d~e~kKLCKKlKv~ 73 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSK--SAKSAEALLKLLSDVAQAVKG--QGTIAWIDCG---DSESRKLCKKLKVD 73 (112)
T ss_pred chHHHHHHHhhcCcEEEEEec--chhhHHHHHHHHHHHHHHhcC--ceeEEEEecC---ChHHHHHHHHHccC
Confidence 347899999888899999987 433322 789999999876 4578899996 45679999999887
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.45 E-value=0.16 Score=35.58 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec----cchHhhh
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC----VADSLNK 111 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~----~~~~l~~ 111 (243)
++.|.. |||++|..-.++-+.. ++.+-.+|++. +.....+....|.. +|++.+=. ..++|.+
T Consensus 3 v~lys~--~~Cp~C~~ak~~L~~~----~i~~~~~~v~~--~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~ 69 (72)
T cd03029 3 VSLFTK--PGCPFCARAKAALQEN----GISYEEIPLGK--DITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEK 69 (72)
T ss_pred EEEEEC--CCCHHHHHHHHHHHHc----CCCcEEEECCC--ChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHH
Confidence 456888 9999995444444333 45566777752 11234455566888 99985322 4445554
No 179
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.43 E-value=0.1 Score=36.54 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=33.5
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc--CceEEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT--PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~--~PTi~l 102 (243)
++.|.. |||++|..-..+.+.. ++.+-.+|++. +.....++.++++.. +|++.+
T Consensus 2 i~ly~~--~~Cp~C~~ak~~L~~~----~i~~~~i~i~~-~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTK--PNCPYCVRAKALLDKK----GVDYEEIDVDG-DPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeC--CCChHHHHHHHHHHHC----CCcEEEEECCC-CHHHHHHHHHHhCCCCccCEEEE
Confidence 455777 9999997666665553 56677788862 111123444555654 998853
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.40 E-value=0.099 Score=36.77 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=31.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHH---hhcCcc-CceEEE
Q psy3889 43 VKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLA---KRGCLT-PQLLWA 102 (243)
Q Consensus 43 V~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~---~~~~V~-~PTi~l 102 (243)
..|.. |||++|..-.++-++. ++.+-.+|++ ++++.. .+.|.. +|++.+
T Consensus 2 ~ly~~--~~Cp~C~~ak~~L~~~----~i~~~~~di~-----~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSK--NNCVQCKMTKKALEEH----GIAFEEINID-----EQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeC--CCCHHHHHHHHHHHHC----CCceEEEECC-----CCHHHHHHHHHcCCcccCEEEE
Confidence 34666 9999995555544432 5667788886 333333 334877 999865
No 181
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.37 E-value=0.55 Score=35.34 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=55.1
Q ss_pred ceEc-ChhhHHHHhc-cCCeEEEEEEecCCCCCCc-HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCce
Q psy3889 23 HVSL-DTHNFDKILS-KFHTTLVKFDIAYPYGAKH-EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQL 99 (243)
Q Consensus 23 v~~L-~~~nF~~~v~-~~k~vlV~FyA~~pWC~~c-p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PT 99 (243)
+..+ +....++++. ....++|-|+. .--+.. ..|.++|..+.. ++.|+.. .+.++...+++..|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~--~~~~~~~~~F~~vA~~~R~--d~~F~~~--------~~~~~~~~~~~~~~~ 69 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFK--SEDSEHYKAFEEAAEEFHP--YIKFFAT--------FDSKVAKKLGLKMNE 69 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEEC--CCCCHHHHHHHHHHHhhhc--CCEEEEE--------CcHHHHHHcCCCCCc
Confidence 3455 5566899997 78888888887 544444 799999998853 6777554 346778888877999
Q ss_pred EEEecc-chHhhh
Q psy3889 100 LWAFCV-ADSLNK 111 (243)
Q Consensus 100 i~lF~~-~~~l~~ 111 (243)
+.+|++ .+.-..
T Consensus 70 i~l~~~~~e~~~~ 82 (102)
T cd03066 70 VDFYEPFMEEPVT 82 (102)
T ss_pred EEEeCCCCCCCcc
Confidence 999974 333344
No 182
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.80 E-value=0.21 Score=35.64 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCc---------------------------ccHHHH
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGER---------------------------DNEDLA 90 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~---------------------------~n~~l~ 90 (243)
++.|+. |+|++| |.+.++.... .+++.+..+.+.-.+.. .+..++
T Consensus 1 i~~f~d--~~Cp~C~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFD--PLCPYCYLFEPELEKLLYAD--DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA 76 (98)
T ss_pred CeEEEC--CCCHhHHhhhHHHHHHHhhc--CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 357899 999999 6666665333 33566665554211110 123566
Q ss_pred hhcCcc-CceEEEe
Q psy3889 91 KRGCLT-PQLLWAF 103 (243)
Q Consensus 91 ~~~~V~-~PTi~lF 103 (243)
.++|+. .||+.+.
T Consensus 77 ~~~g~~g~Pt~v~~ 90 (98)
T cd02972 77 RALGVTGTPTFVVN 90 (98)
T ss_pred HHcCCCCCCEEEEC
Confidence 778888 9998865
No 183
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.75 E-value=0.19 Score=35.28 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++-|+. |||++|..-.++.+.. ++.+-.+|++. +.....++.+..+-. +|++++
T Consensus 3 v~ly~~--~~C~~C~ka~~~L~~~----gi~~~~~di~~-~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSR--LGCEDCTAVRLFLREK----GLPYVEINIDI-FPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEec--CCChhHHHHHHHHHHC----CCceEEEECCC-CHHHHHHHHHHhCCCCcCEEEE
Confidence 455777 9999995555554443 46677778751 111234566677777 999853
No 184
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.40 E-value=0.95 Score=34.64 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=48.5
Q ss_pred eEc-ChhhHHHHhccC-CeEEEEEEecCCCCCCc-HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceE
Q psy3889 24 VSL-DTHNFDKILSKF-HTTLVKFDIAYPYGAKH-EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLL 100 (243)
Q Consensus 24 ~~L-~~~nF~~~v~~~-k~vlV~FyA~~pWC~~c-p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi 100 (243)
..+ +.++.+..+... +.++|-|+. .--+.. ..|.++|..+.. ++.|+.. .+.++..++++..|++
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~--~~~~~~~~~F~~vA~~~Rd--d~~F~~t--------~~~~~~~~~~~~~~~v 70 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFS--GEEDPAYQLYQDAANSLRE--DYKFHHT--------FDSEIFKSLKVSPGQL 70 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEEC--CCCCHHHHHHHHHHHhccc--CCEEEEE--------ChHHHHHhcCCCCCce
Confidence 344 456678877555 788888887 544333 899999998854 6777654 3457788888887878
Q ss_pred EEec
Q psy3889 101 WAFC 104 (243)
Q Consensus 101 ~lF~ 104 (243)
.+|+
T Consensus 71 vl~r 74 (107)
T cd03068 71 VVFQ 74 (107)
T ss_pred EEEC
Confidence 8884
No 185
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.34 E-value=0.77 Score=34.73 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=48.9
Q ss_pred ChhhHHHHhccCCeEEEEEEecCCCCCCc-HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEEEec
Q psy3889 27 DTHNFDKILSKFHTTLVKFDIAYPYGAKH-EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLWAFC 104 (243)
Q Consensus 27 ~~~nF~~~v~~~k~vlV~FyA~~pWC~~c-p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~lF~ 104 (243)
+.++.++.+...+.++|-|+. .--+.. ..|.++|+.+.. ++.|+.. .+.++..++++ .|++.+|+
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~--~~~~~~~~~F~~vA~~~R~--d~~F~~~--------~~~~~~~~~~~-~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFE--DEDSKLLSEFLKAADTLRE--SFRFAHT--------SDKQLLEKYGY-GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEc--CCCchHHHHHHHHHHhhhh--cCEEEEE--------ChHHHHHhcCC-CCceEEEe
Confidence 456678878778888888887 544444 899999998854 6777655 34667888988 89999995
No 186
>PRK13189 peroxiredoxin; Provisional
Probab=93.30 E-value=0.17 Score=43.85 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=30.8
Q ss_pred cCCeEE-EEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTL-VKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vl-V~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+++++ +.|++ .||+.| +.|.+++.+|+ ..++.+.-|.+|
T Consensus 34 ~Gk~vvL~f~pa--~fcpvC~tEl~~l~~~~~ef~-~~~v~VigvS~D 78 (222)
T PRK13189 34 KGKWFVLFSHPA--DFTPVCTTEFVAFQKRYDEFR-ELNTELIGLSID 78 (222)
T ss_pred CCCeEEEEEeCC--CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEECC
Confidence 456554 56678 999999 78888888885 357888888886
No 187
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.25 E-value=0.37 Score=36.26 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHhccCCeEEEEE-EecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 31 FDKILSKFHTTLVKF-DIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 31 F~~~v~~~k~vlV~F-yA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
-++.+++++.++..= +..+||||+|-.-.++-+.. ++.+-.+|+++ +......+.+..|.. +|++.+
T Consensus 5 v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 5 IKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC----GVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc----CCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEE
Confidence 345666655444211 11239999995555554443 34566777752 111224566667777 999864
No 188
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.12 E-value=0.29 Score=35.60 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=32.2
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
+..|.. |||++|..-.++-++ ..+.+-.+|+++ +.+..+.....|.. +|++..
T Consensus 3 v~lYt~--~~Cp~C~~ak~~L~~----~gI~~~~idi~~--~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTR--NDCVQCHATKRAMES----RGFDFEMINVDR--VPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeC--CCCHhHHHHHHHHHH----CCCceEEEECCC--CHHHHHHHHHcCCCCcCEEEE
Confidence 455777 999999543333333 257788888862 11122223445777 999964
No 189
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.07 E-value=0.39 Score=47.06 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=47.8
Q ss_pred cCCeEEEEEEecCCCCCCcHHHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKHEAFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~ 104 (243)
..+.+|+.|+. +-|..|....++.++++. ++.+.+-..|.. .+.+++++|+|+ .|++.++.
T Consensus 365 ~~~v~l~~~~~--~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~-----~~~~~~~~~~v~~~P~~~i~~ 427 (555)
T TIGR03143 365 ENPVTLLLFLD--GSNEKSAELQSFLGEFASLSEKLNSEAVNRG-----EEPESETLPKITKLPTVALLD 427 (555)
T ss_pred CCCEEEEEEEC--CCchhhHHHHHHHHHHHhcCCcEEEEEeccc-----cchhhHhhcCCCcCCEEEEEe
Confidence 34457888888 888899888888877653 456777677764 678899999999 99999984
No 190
>PRK10638 glutaredoxin 3; Provisional
Probab=92.71 E-value=0.28 Score=35.39 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=32.9
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
++.|.. +||++|-.-..+-+.. ++.+..+|++. +.....++.+..+.. +|++.
T Consensus 4 v~ly~~--~~Cp~C~~a~~~L~~~----gi~y~~~dv~~-~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTK--ATCPFCHRAKALLNSK----GVSFQEIPIDG-DAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEEC--CCChhHHHHHHHHHHc----CCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEE
Confidence 345666 9999995555554443 45566777752 111234566667888 99884
No 191
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=92.63 E-value=0.24 Score=41.65 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=15.2
Q ss_pred cCCeEEEEEEecCCCCCCc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH 55 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c 55 (243)
..+.+++.|+. |.|++|
T Consensus 76 ~~~~~i~~f~D--~~Cp~C 92 (197)
T cd03020 76 NGKRVVYVFTD--PDCPYC 92 (197)
T ss_pred CCCEEEEEEEC--CCCccH
Confidence 35789999999 999999
No 192
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.42 E-value=0.26 Score=41.77 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=31.7
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.+++++|.||+ ..||++| +.+.+++++|.. .++.|.-|+++
T Consensus 35 ~Gk~~lL~F~p-~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d 79 (199)
T PTZ00253 35 KGKWVVLFFYP-LDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMD 79 (199)
T ss_pred CCCEEEEEEEc-CCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 46789998883 3789999 577888888853 47888889886
No 193
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.07 E-value=0.43 Score=35.19 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHhccCCeEEEEE-EecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 33 KILSKFHTTLVKF-DIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 33 ~~v~~~k~vlV~F-yA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
+.|++++.|+..= +...|||++|-.-.++-+.. .+.+..+|++. +......+.+..|-+ +|++++
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----~i~y~~idv~~-~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL----GVDFGTFDILE-DEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----CCCeEEEEcCC-CHHHHHHHHHHhCCCCCCEEEE
Confidence 4555544433211 11237999995555454443 35567777741 111224556667877 999843
No 194
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.04 E-value=0.39 Score=37.10 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=45.6
Q ss_pred ChhhHHHHhcc--CCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc--Cc
Q psy3889 27 DTHNFDKILSK--FHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT--PQ 98 (243)
Q Consensus 27 ~~~nF~~~v~~--~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~--~P 98 (243)
+.+.|++++.. .+++++.=.+ +.||-. ..|++...... +++.++-+|+-.+ ..-...++++|||. =|
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHS--t~C~IS~~a~~~~e~~~~~~~--~~~~~y~l~v~~~-R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHS--TRCPISAMALREFEKFWEESP--DEIPVYYLDVIEY-RPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE---TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGG-HHHHHHHHHHHT----SS
T ss_pred CHHHHHHHHHhcccCcEEEEEeC--CCChhhHHHHHHHHHHhhcCC--ccceEEEEEEEeC-chhHHHHHHHhCCCcCCC
Confidence 46789998844 6677765566 888876 44555544432 2388999998611 11236788999999 99
Q ss_pred eEEEeccch
Q psy3889 99 LLWAFCVAD 107 (243)
Q Consensus 99 Ti~lF~~~~ 107 (243)
.++++++++
T Consensus 81 Q~ili~~g~ 89 (105)
T PF11009_consen 81 QVILIKNGK 89 (105)
T ss_dssp EEEEEETTE
T ss_pred cEEEEECCE
Confidence 999998544
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.47 Score=34.48 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=33.4
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhc-Ccc-CceEEEe
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG-CLT-PQLLWAF 103 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~-~V~-~PTi~lF 103 (243)
++.|.. ||||+|-.-.++.+.. ++.+..+|+++....+.++..++- |.+ +|+|++=
T Consensus 3 v~iyt~--~~CPyC~~ak~~L~~~----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTK--PGCPYCKRAKRLLDRK----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEEC--CCCchHHHHHHHHHHc----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 345677 9999995444444432 566777777632211223455555 778 9999753
No 196
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.66 E-value=0.8 Score=36.78 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=49.8
Q ss_pred hhHHHHh--ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 29 HNFDKIL--SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 29 ~nF~~~v--~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
-.-|+.| ...+.|++.|-- .|-+.| .++.++|+..++ -.+|+-||++ +-+++.+.|.+. -=|++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~--d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~-----~Vpdfn~~yel~dP~tvm 79 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGR--DWDPVCMQMDEILYKIAEKVKN--FAVIYLVDID-----EVPDFNQMYELYDPCTVM 79 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE---TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETT-----TTHCCHHHTTS-SSEEEE
T ss_pred chHHHHHhccCceEEEEEeCC--CCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcc-----cchhhhcccccCCCeEEE
Confidence 3445655 678899999999 999999 677777777754 5789999997 778899999999 55566
Q ss_pred Ee
Q psy3889 102 AF 103 (243)
Q Consensus 102 lF 103 (243)
||
T Consensus 80 FF 81 (133)
T PF02966_consen 80 FF 81 (133)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 197
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.20 E-value=0.67 Score=39.47 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCeEEEEEEecCCCCCCcHHH-------HHHHHHccCCCCcEEEEEec
Q psy3889 38 FHTTLVKFDIAYPYGAKHEAF-------LEVAESSKHQPDFLVAEVGV 78 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~cp~~-------~~lA~~~~~~~~v~vakVd~ 78 (243)
+++.+|+|+. ..||||-.| ..+.+.+. +++.+.++.+
T Consensus 37 ~~~~VvEffd--y~CphC~~~~~~l~~~~~~~~~~~--~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFS--FYCPHCYQFEEVYHVSDNVKKKLP--EGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeC--CCCccHHHhcccccchHHHHHhCC--CCCeEEEecc
Confidence 5678999999 999999444 44455553 3666777655
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=1.5 Score=44.07 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCCCCCcHHHH-------HHHHHccCCCCcEEEEEecccCCCcccHHHHhhc-
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFL-------EVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRG- 93 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~-------~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~- 93 (243)
+-..=.++.|.+.-..++++|+..-. +||.-|-+.. ++|..+. .+++-+|||=+ +-+++-+.|
T Consensus 27 ~W~pW~~eAf~~A~~edkPIflSIGy--s~CHWChVM~~ESf~d~eiA~~lN--~~FV~IKVDRE-----ERPDvD~~Ym 97 (667)
T COG1331 27 DWYPWGEEAFAKAKEEDKPILLSIGY--STCHWCHVMAHESFEDPEIAAILN--ENFVPVKVDRE-----ERPDVDSLYM 97 (667)
T ss_pred cccccCHHHHHHHHHhCCCEEEEecc--ccccchHHHhhhcCCCHHHHHHHH--hCceeeeEChh-----hccCHHHHHH
Confidence 34566789999998899999999988 9999883332 4565552 37888999875 445555554
Q ss_pred ------Ccc--CceEEEeccchHhhhhhhHHHHhhhhcccccC------cCccchhhHHHHHHHHhhcHHHHHHHHHHHH
Q psy3889 94 ------CLT--PQLLWAFCVADSLNKTLFILIIFFSSIGIWIG------AVGCLQDFDRLAKDFIRSASQERKTLLKSAE 159 (243)
Q Consensus 94 ------~V~--~PTi~lF~~~~~l~~~~f~~~~i~~~~g~~~~------~~G~i~~~d~l~~~f~~~~~~~~~~~l~~~~ 159 (243)
..+ +|--+|.. ++.--= | +|+|.+ .||.+.-+.++..-+- ++|.++++.++
T Consensus 98 ~~~q~~tG~GGWPLtVfLT-Pd~kPF--f--------agTY~P~e~r~g~pGf~~lL~~i~~~W~----edr~~~~~~a~ 162 (667)
T COG1331 98 NASQAITGQGGWPLTVFLT-PDGKPF--F--------AGTYFPKEDRYGRPGFKQLLEAIRETWR----EDREELLQSAE 162 (667)
T ss_pred HHHHHhccCCCCceeEEEC-CCCcee--e--------eeeecCCcccCCCcCHHHHHHHHHHHHH----hhHHHHHHHHH
Confidence 445 88655543 233222 5 677754 4676666666655553 36777888887
Q ss_pred HHHHHhh
Q psy3889 160 DLWDEIK 166 (243)
Q Consensus 160 ~~~~~~~ 166 (243)
.+.+.++
T Consensus 163 ~~~~~l~ 169 (667)
T COG1331 163 RVLEALE 169 (667)
T ss_pred HHHHHHH
Confidence 7777664
No 199
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.76 E-value=0.44 Score=37.30 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=20.3
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHc
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESS 65 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~ 65 (243)
..+.+++.|+. |+|||| |.+.++...+
T Consensus 4 ~a~~~i~~f~D--~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFD--YNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEEC--CCChhHHHhhHHHHHHHHHC
Confidence 35789999999 999999 5555554443
No 200
>KOG2792|consensus
Probab=89.59 E-value=1.4 Score=39.33 Aligned_cols=78 Identities=10% Similarity=0.159 Sum_probs=51.8
Q ss_pred cCCeEEEEEEecCCCCCC-cH-HHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec----cchHh
Q psy3889 37 KFHTTLVKFDIAYPYGAK-HE-AFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC----VADSL 109 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~-cp-~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~----~~~~l 109 (243)
.++++|+-|-- +.||. || ++++++.... .+-.+.++. +|.++... +.+.+
T Consensus 138 ~Gkw~LiYFGF--ThCPDICPdELeKm~~~Vd---------------------~i~~~~~~~~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 138 LGKWSLIYFGF--THCPDICPDELEKMSAVVD---------------------EIEAKPGLPPVPLFISVDPERDSVEVV 194 (280)
T ss_pred ccceEEEEecc--cCCCCcChHHHHHHHHHHH---------------------HHhccCCCCccceEEEeCcccCCHHHH
Confidence 57899999987 99985 85 8888876541 122345566 77666654 34444
Q ss_pred hhhhhHHHHhhhhcccccCcCccchhhHHHHHHH
Q psy3889 110 NKTLFILIIFFSSIGIWIGAVGCLQDFDRLAKDF 143 (243)
Q Consensus 110 ~~~~f~~~~i~~~~g~~~~~~G~i~~~d~l~~~f 143 (243)
.. + +.+..--+.|..|+-+++...+++|
T Consensus 195 ~e--Y----~~eF~pkllGLTGT~eqvk~vak~y 222 (280)
T KOG2792|consen 195 AE--Y----VSEFHPKLLGLTGTTEQVKQVAKKY 222 (280)
T ss_pred HH--H----HHhcChhhhcccCCHHHHHHHHHHh
Confidence 44 4 5544444567788888888888876
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=88.39 E-value=3.1 Score=32.08 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=52.5
Q ss_pred eEcChhhHHHHhccCCeEEEEEEecCCCCC-------CcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 24 VSLDTHNFDKILSKFHTTLVKFDIAYPYGA-------KHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 24 ~~L~~~nF~~~v~~~k~vlV~FyA~~pWC~-------~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
.++|.+|..... ..+.++.||. ..|.. ..+.+.++|+.+++ +.+.|+-+|.+ +.....+.||++
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~-----~~~~~l~~fgl~ 72 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYN-VDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKE-----DFSHELEEFGLD 72 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEe-ccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHH-----HHHHHHHHcCCC
Confidence 456778888875 2334555542 02221 13899999999972 36999999997 555588899985
Q ss_pred -----CceEEEeccchHhhh
Q psy3889 97 -----PQLLWAFCVADSLNK 111 (243)
Q Consensus 97 -----~PTi~lF~~~~~l~~ 111 (243)
+|++.++.. ++ .+
T Consensus 73 ~~~~~~P~~~i~~~-~~-~K 90 (111)
T cd03073 73 FSGGEKPVVAIRTA-KG-KK 90 (111)
T ss_pred cccCCCCEEEEEeC-CC-Cc
Confidence 799998753 45 66
No 202
>KOG1752|consensus
Probab=88.11 E-value=2.2 Score=32.78 Aligned_cols=76 Identities=16% Similarity=0.030 Sum_probs=42.9
Q ss_pred hHHHHhccCCeEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec----
Q psy3889 30 NFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC---- 104 (243)
Q Consensus 30 nF~~~v~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~---- 104 (243)
...+.+..++ | |.|.. +||+.|-....+-..+ ..+..+..+|-+..+..-...+.+--+-+ +|.+++=.
T Consensus 6 ~v~~~i~~~~-V-VifSK--s~C~~c~~~k~ll~~~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 6 KVRKMISENP-V-VIFSK--SSCPYCHRAKELLSDL--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIG 79 (104)
T ss_pred HHHHHhhcCC-E-EEEEC--CcCchHHHHHHHHHhC--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEc
Confidence 3455665543 3 44888 9999996566665554 33567777776421111123333333455 89887543
Q ss_pred cchHhhh
Q psy3889 105 VADSLNK 111 (243)
Q Consensus 105 ~~~~l~~ 111 (243)
..+++.+
T Consensus 80 G~~dl~~ 86 (104)
T KOG1752|consen 80 GASDLMA 86 (104)
T ss_pred CHHHHHH
Confidence 4555555
No 203
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=88.01 E-value=1.6 Score=35.42 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=41.2
Q ss_pred HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEEEec--------------cchHhhhhhhHHHHhhh
Q psy3889 56 EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLWAFC--------------VADSLNKTLFILIIFFS 121 (243)
Q Consensus 56 p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~lF~--------------~~~~l~~~~f~~~~i~~ 121 (243)
..|.++|+.+.+ ++.++.+. +.+++++++++.|++.+|+ +.++|.+ | |..
T Consensus 10 ~~f~~~A~~~~~--~~~F~~~~--------~~~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~--f----I~~ 73 (184)
T PF13848_consen 10 EIFEEAAEKLKG--DYQFGVTF--------NEELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKK--F----IKK 73 (184)
T ss_dssp HHHHHHHHHHTT--TSEEEEEE---------HHHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHH--H----HHH
T ss_pred HHHHHHHHhCcC--CcEEEEEc--------HHHHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHH--H----HHH
Confidence 588999999865 58888873 5779999999999999998 3667888 8 766
Q ss_pred hc
Q psy3889 122 SI 123 (243)
Q Consensus 122 ~~ 123 (243)
+.
T Consensus 74 ~~ 75 (184)
T PF13848_consen 74 NS 75 (184)
T ss_dssp HS
T ss_pred hc
Confidence 53
No 204
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=1.4 Score=36.41 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=44.7
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCccCceEE
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLTPQLLW 101 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~~PTi~ 101 (243)
.+++|++.|| +-.|++-| -.|+....+|.. .+..|.-|..| ....++.++++++++||-+-
T Consensus 29 ~Gk~VVLyFY-Pk~~TpgCT~Ea~~Frd~~~ef~~-~~a~V~GIS~D--s~~~~~~F~~k~~L~f~LLS 93 (157)
T COG1225 29 RGKPVVLYFY-PKDFTPGCTTEACDFRDLLEEFEK-LGAVVLGISPD--SPKSHKKFAEKHGLTFPLLS 93 (157)
T ss_pred cCCcEEEEEC-CCCCCCcchHHHHHHHHHHHHHHh-CCCEEEEEeCC--CHHHHHHHHHHhCCCceeeE
Confidence 5668999898 34577888 467777777753 36788888876 34467899999998877654
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=87.81 E-value=1.4 Score=37.89 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=35.5
Q ss_pred hhHHHHhccCCeEEEEEEe-cCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 29 HNFDKILSKFHTTLVKFDI-AYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 29 ~nF~~~v~~~k~vlV~FyA-~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
+-.+++|++++.++..=-. ..|||++|-.-.++-+.. ++.+..+|+++ |+.....+.+.-|.. +|++.+
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~----~i~y~~~DI~~-d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS----GVKYETYNIFE-DPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc----CCCEEEEEcCC-CHHHHHHHHHHhCCCCCCeEEE
Confidence 3455566666655543322 116677773333332222 46677788852 111224445555667 888864
No 206
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=87.23 E-value=1.2 Score=38.80 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=15.4
Q ss_pred ccHHHHhhcCcc-CceEEE
Q psy3889 85 DNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 85 ~n~~l~~~~~V~-~PTi~l 102 (243)
.+.++++++||+ .|||++
T Consensus 190 ~~~~la~~lgi~gTPtiv~ 208 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVL 208 (232)
T ss_pred HhHHHHHHcCCccccEEEE
Confidence 578889999999 999983
No 207
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=2.6 Score=34.89 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=53.6
Q ss_pred ccCCeEEEEEEecCCCCCCcHHHHHHHHHcc--CCCCcEEEEEecccCCCcc---c---HHHH-hhcCccCceEEEec--
Q psy3889 36 SKFHTTLVKFDIAYPYGAKHEAFLEVAESSK--HQPDFLVAEVGVKDYGERD---N---EDLA-KRGCLTPQLLWAFC-- 104 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~--~~~~v~vakVd~~d~~~~~---n---~~l~-~~~~V~~PTi~lF~-- 104 (243)
-.++.+||-=.| +-||.-|.|+.|...++ .+..+.|.-.-|..++.++ + ..+| ..|||+||.+-=..
T Consensus 23 ~~GkVlLIVNtA--SkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~Vn 100 (162)
T COG0386 23 YKGKVLLIVNTA--SKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVN 100 (162)
T ss_pred hCCcEEEEEEcc--cccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeec
Confidence 477899998999 99999998888877663 3557888888898776444 2 3455 46898888766443
Q ss_pred --cchHhhh
Q psy3889 105 --VADSLNK 111 (243)
Q Consensus 105 --~~~~l~~ 111 (243)
++.=|-+
T Consensus 101 G~~a~PLy~ 109 (162)
T COG0386 101 GKNAHPLYK 109 (162)
T ss_pred CCCCCcHHH
Confidence 4455666
No 208
>KOG3170|consensus
Probab=85.32 E-value=3.1 Score=36.00 Aligned_cols=73 Identities=8% Similarity=-0.042 Sum_probs=54.4
Q ss_pred CceEcChhhHHHHh---ccCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 22 GHVSLDTHNFDKIL---SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 22 ~v~~L~~~nF~~~v---~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
.|.+++...|-+-| +.+-+|+|..|. ..-+.| -.++.+|..| +.+.|+++-.++ -..-|-
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~--~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~--------cIpNYP 158 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYK--QGVPLCALLSHHLQSLACKF---PQIKFVKIPATT--------CIPNYP 158 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeec--cccHHHHHHHHHHHHHhhcC---CcceEEeccccc--------ccCCCc
Confidence 58899999998876 456699999999 888889 6777888776 468888885431 113344
Q ss_pred cc-CceEEEeccch
Q psy3889 95 LT-PQLLWAFCVAD 107 (243)
Q Consensus 95 V~-~PTi~lF~~~~ 107 (243)
=. .||+++|..++
T Consensus 159 e~nlPTl~VY~~G~ 172 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGA 172 (240)
T ss_pred ccCCCeEEEeecch
Confidence 45 99999998443
No 209
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.31 E-value=1.5 Score=34.88 Aligned_cols=40 Identities=10% Similarity=-0.098 Sum_probs=28.9
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGV 78 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~ 78 (243)
..+++|+.|+. +-|+|| +.+.++.+.+...+++.+.-++.
T Consensus 11 ~a~~~v~~f~d--~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFD--FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE---TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEEC--CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45789999999 999999 55556666664445777777765
No 210
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=84.59 E-value=2 Score=40.78 Aligned_cols=54 Identities=4% Similarity=0.035 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHh---------hcCcc-CceEEEe
Q psy3889 42 LVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAK---------RGCLT-PQLLWAF 103 (243)
Q Consensus 42 lV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~---------~~~V~-~PTi~lF 103 (243)
++.|.. ||||+|..-.++-+.. ++.+-.||+++ +....++-+ +.|.+ +|++.+=
T Consensus 4 V~vys~--~~Cp~C~~aK~~L~~~----gi~~~~idi~~--~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~ 67 (410)
T PRK12759 4 VRIYTK--TNCPFCDLAKSWFGAN----DIPFTQISLDD--DVKRAEFYAEVNKNILLVEEHIRTVPQIFVG 67 (410)
T ss_pred EEEEeC--CCCHHHHHHHHHHHHC----CCCeEEEECCC--ChhHHHHHHHHhhccccccCCCCccCeEEEC
Confidence 566888 9999997666665543 46677788862 111122222 24677 9999653
No 211
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=84.47 E-value=3.1 Score=33.82 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=36.2
Q ss_pred CCeEEEEEEecCCCCCCc-----HHHHHHHHHccCCCCc-EEEEEecccCCCcccHHHHhhcCc-c-Cc
Q psy3889 38 FHTTLVKFDIAYPYGAKH-----EAFLEVAESSKHQPDF-LVAEVGVKDYGERDNEDLAKRGCL-T-PQ 98 (243)
Q Consensus 38 ~k~vlV~FyA~~pWC~~c-----p~~~~lA~~~~~~~~v-~vakVd~~d~~~~~n~~l~~~~~V-~-~P 98 (243)
++++++-|| +..||+.| +.|.+...+|.. .++ .+.-|.+|+ ...+.++++++++ . ||
T Consensus 29 gk~vvl~fy-P~~~tp~Ct~e~~~~~~~~~~~f~~-~g~~~V~~iS~D~--~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGV-PGAFTPTCSAQHLPGYVENADELKA-KGVDEVICVSVND--PFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEe-CCCCCCCCchhHHHHHHHhHHHHHH-CCCCEEEEEECCC--HHHHHHHHHhhCCCCcEE
Confidence 456666666 35899999 345666666642 345 477777752 2345778888887 3 66
No 212
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=84.10 E-value=2 Score=34.71 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=26.7
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGV 78 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~ 78 (243)
..+.+++.|+. +.|||| |...++.+.+. .++.+-.+.+
T Consensus 14 ~~~~~i~~f~D--~~Cp~C~~~~~~~~~~~~~~~--~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFS--YGCPHCYNFEPILEAWVKKLP--KDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEEC--CCCcchhhhhHHHHHHHHhCC--CCceEEEcCC
Confidence 56899999999 999999 55555555552 3565554443
No 213
>PRK10824 glutaredoxin-4; Provisional
Probab=82.64 E-value=3.3 Score=32.39 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHhccCCeEEEEEEe---cCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 31 FDKILSKFHTTLVKFDI---AYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 31 F~~~v~~~k~vlV~FyA---~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
-++.|++++.|+ |-. ..||||+|-.-.++-+.+. +.+..+|+++ +......+.+.-|.+ +|.|+
T Consensus 8 v~~~I~~~~Vvv--f~Kg~~~~p~Cpyc~~ak~lL~~~~----i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 8 IQRQIAENPILL--YMKGSPKLPSCGFSAQAVQALSACG----ERFAYVDILQ-NPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHhcCCEEE--EECCCCCCCCCchHHHHHHHHHHcC----CCceEEEecC-CHHHHHHHHHHhCCCCCCeEE
Confidence 345566655443 432 1269999954444444432 3344456641 111123344444666 78775
No 214
>KOG3171|consensus
Probab=82.62 E-value=5.5 Score=34.85 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=60.0
Q ss_pred CceEcC-hhhHHHHhccC---CeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 22 GHVSLD-THNFDKILSKF---HTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 22 ~v~~L~-~~nF~~~v~~~---k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
-|.+++ ...|-+.|++. -.++|..|- |.-.-|..+.....-++ .-|.+.|++|-.. +-....+|..+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYE--dgi~gcealn~~~~cLAAeyP~vKFckikss------~~gas~~F~~n 210 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYE--DGIKGCEALNSSLTCLAAEYPIVKFCKIKSS------NTGASDRFSLN 210 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEec--CCCchHHHHhhhHHHhhccCCceeEEEeeec------cccchhhhccc
Confidence 466775 47888888543 367788899 88888955554444332 2357899999764 56668899999
Q ss_pred -CceEEEeccchHhhh
Q psy3889 97 -PQLLWAFCVADSLNK 111 (243)
Q Consensus 97 -~PTi~lF~~~~~l~~ 111 (243)
+||+.+|+.++=|-+
T Consensus 211 ~lP~LliYkgGeLIgN 226 (273)
T KOG3171|consen 211 VLPTLLIYKGGELIGN 226 (273)
T ss_pred CCceEEEeeCCchhHH
Confidence 999999997777777
No 215
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=69.91 E-value=14 Score=30.61 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=31.5
Q ss_pred cCCeEEEEEEecCCCCCC-cH----HHHHHHHHccC-CCCcEEEEEecccCCCcccHHHHhhcC
Q psy3889 37 KFHTTLVKFDIAYPYGAK-HE----AFLEVAESSKH-QPDFLVAEVGVKDYGERDNEDLAKRGC 94 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~-cp----~~~~lA~~~~~-~~~v~vakVd~~d~~~~~n~~l~~~~~ 94 (243)
.+++++|.|.- .-|+. || .+.++.+.+.. ..++.+.-|.+| .+.+.++..++|.
T Consensus 51 ~Gk~~lv~F~y--T~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD--P~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 51 KGKWVLVFFGY--TRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD--PERDTPEVLKKYA 110 (174)
T ss_dssp TTSEEEEEEE---TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS--TTTC-HHHHHHHH
T ss_pred CCCeEEEEEEE--cCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC--CCCCCHHHHHHHH
Confidence 67899999887 99975 85 33334444432 346777777775 2233344444443
No 216
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=68.66 E-value=14 Score=30.18 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=43.6
Q ss_pred eEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc--Cc---eEEE---ec----cch
Q psy3889 40 TTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT--PQ---LLWA---FC----VAD 107 (243)
Q Consensus 40 ~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~--~P---Ti~l---F~----~~~ 107 (243)
.-++.|++ |.||=|..|-+.-+.. .+.|-.+..+ +...+.++++|. +- |..+ |. .++
T Consensus 26 ~~~~vyks--PnCGCC~~w~~~mk~~----Gf~Vk~~~~~-----d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKS--PNCGCCDEWAQHMKAN----GFEVKVVETD-----DFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAE 94 (149)
T ss_pred eeEEEEeC--CCCccHHHHHHHHHhC----CcEEEEeecC-----cHHHHHHhcCCChhhccccEEEEcCEEEeccCCHH
Confidence 34567999 9999999998887642 5667677665 557788889987 43 3322 11 788
Q ss_pred Hhhhhhh
Q psy3889 108 SLNKTLF 114 (243)
Q Consensus 108 ~l~~~~f 114 (243)
++.. |
T Consensus 95 aI~~--l 99 (149)
T COG3019 95 AIAR--L 99 (149)
T ss_pred HHHH--H
Confidence 8888 8
No 217
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=62.86 E-value=8.4 Score=34.01 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=38.6
Q ss_pred hhcCCCceEcChhhH---HHHhccCCeEEEEEEecCCCCCCc----HHHHHHHHHccC
Q psy3889 17 LVLSKGHVSLDTHNF---DKILSKFHTTLVKFDIAYPYGAKH----EAFLEVAESSKH 67 (243)
Q Consensus 17 ~~~~~~v~~L~~~nF---~~~v~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~ 67 (243)
.+..+.|+.+++.+. -+..+++++.+++|-+ .-||+= +.|.++++.|++
T Consensus 78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS--~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGS--CTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhccCCCCeEEEccc--ccchHHHHHHHHHHHHHHHhhh
Confidence 344567999998774 3345789999999999 888863 899999999965
No 218
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=62.61 E-value=54 Score=28.02 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred cCCeEEEEEEecCCCCCC-cH----HHHHHHHHcc--CCCCcEEEEEecccCCCcccHHHHhhcCc-c-CceEEEec
Q psy3889 37 KFHTTLVKFDIAYPYGAK-HE----AFLEVAESSK--HQPDFLVAEVGVKDYGERDNEDLAKRGCL-T-PQLLWAFC 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~-cp----~~~~lA~~~~--~~~~v~vakVd~~d~~~~~n~~l~~~~~V-~-~PTi~lF~ 104 (243)
++++++|-|-= ..|+- || .+..+-+.+. ...++.+.-|-+| .+.+.++..++|.. . .|-+....
T Consensus 66 ~Gk~~lv~Fgy--T~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD--PerDtp~~lk~Y~~~~~~~~~~~lt 138 (207)
T COG1999 66 KGKPSLVFFGY--THCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD--PERDTPEVLKKYAELNFDPRWIGLT 138 (207)
T ss_pred CCCEEEEEeec--CCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC--CCCCCHHHHHHHhcccCCCCeeeee
Confidence 67889998875 89985 85 2333433432 2345666666554 34456888889988 6 77666655
No 219
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=59.82 E-value=16 Score=30.00 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHhhHHHHhhh
Q psy3889 200 EKARLKGLLNQKVSAQKKDELKSRMNILDSFAL 232 (243)
Q Consensus 200 E~~RL~~~l~~~~~~~k~d~~~~r~NIL~~F~~ 232 (243)
++.|+-......+.....+++++|+|||-.-.+
T Consensus 50 ~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln 82 (157)
T PF07304_consen 50 ELQRVLEACPPSIKKRVVDDIEKRLNILFDHLN 82 (157)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccchhHHHHHHHHHHHHHHHHh
Confidence 333333333345666667888888888865543
No 220
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=56.94 E-value=28 Score=28.32 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=37.8
Q ss_pred EEEEEecCC------CCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCc----c-CceEEEec----cc
Q psy3889 42 LVKFDIAYP------YGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCL----T-PQLLWAFC----VA 106 (243)
Q Consensus 42 lV~FyA~~p------WC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V----~-~PTi~lF~----~~ 106 (243)
+|.|++ + ||++|-.-.++-+.+ .|.+-.+|++. +.....+|.+..+- . +|.+++=. ..
T Consensus 2 VvlYtt--sl~giR~t~~~C~~ak~iL~~~----~V~~~e~DVs~-~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~ 74 (147)
T cd03031 2 VVLYTT--SLRGVRKTFEDCNNVRAILESF----RVKFDERDVSM-DSGFREELRELLGAELKAVSLPRVFVDGRYLGGA 74 (147)
T ss_pred EEEEEc--CCcCCCCcChhHHHHHHHHHHC----CCcEEEEECCC-CHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecH
Confidence 355677 7 899995555554444 57788888851 11113456565554 4 88887443 45
Q ss_pred hHhhh
Q psy3889 107 DSLNK 111 (243)
Q Consensus 107 ~~l~~ 111 (243)
+++.+
T Consensus 75 del~~ 79 (147)
T cd03031 75 EEVLR 79 (147)
T ss_pred HHHHH
Confidence 55555
No 221
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=56.29 E-value=57 Score=22.08 Aligned_cols=51 Identities=8% Similarity=-0.073 Sum_probs=29.2
Q ss_pred EEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 44 KFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 44 ~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
.|+. +||+.|-.-..+.+... -.+.+..||..+ ...++.+..... +|++..
T Consensus 3 ly~~--~~~p~~~rv~~~L~~~g--l~~e~~~v~~~~----~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 3 LYSF--RRCPYAMRARMALLLAG--ITVELREVELKN----KPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEec--CCCcHHHHHHHHHHHcC--CCcEEEEeCCCC----CCHHHHHHCCCCCCCEEEE
Confidence 3566 99999943333333332 245566666531 235566555666 999863
No 222
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=53.98 E-value=25 Score=20.74 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=19.0
Q ss_pred HHHHHHHHHHh-cccCChhhHHHHHHH
Q psy3889 198 TREKARLKGLL-NQKVSAQKKDELKSR 223 (243)
Q Consensus 198 ~~E~~RL~~~l-~~~~~~~k~d~~~~r 223 (243)
..++++|+.+. +|-+|.+.....+.+
T Consensus 2 ~~~L~~L~~l~~~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 2 EDRLEKLKELYDKGEISEEEYEQKKAR 28 (31)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788999988 889999665554443
No 223
>PF08971 GlgS: Glycogen synthesis protein; InterPro: IPR015065 Members of this protein are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them []. ; GO: 0005978 glycogen biosynthetic process; PDB: 1RRZ_A.
Probab=49.29 E-value=23 Score=25.03 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHH--------hcccCChhhHHHHHHHhhHHHH
Q psy3889 193 ESEFLTREKARLKGL--------LNQKVSAQKKDELKSRMNILDS 229 (243)
Q Consensus 193 g~~~i~~E~~RL~~~--------l~~~~~~~k~d~~~~r~NIL~~ 229 (243)
+-||++.-++|++.. +.|+|+++++.+|..|++--+.
T Consensus 10 nfDFlAsS~ArMe~qgr~vd~~~I~gnM~ee~r~~F~~R~~~Yr~ 54 (66)
T PF08971_consen 10 NFDFLASSFARMEAQGRKVDVDAITGNMSEEQREWFCERYAHYRQ 54 (66)
T ss_dssp HHHHHHHHHHHHHHHT----HHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 468999999998764 2478999999999999987665
No 224
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=47.52 E-value=34 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHH--------hcccCChhhHHHHHHHhhHHHHhh
Q psy3889 193 ESEFLTREKARLKGL--------LNQKVSAQKKDELKSRMNILDSFA 231 (243)
Q Consensus 193 g~~~i~~E~~RL~~~--------l~~~~~~~k~d~~~~r~NIL~~F~ 231 (243)
.-||++.-++|++.- +.|+|+++++++|..|+.--+.-.
T Consensus 11 ~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~eRla~Yr~~~ 57 (67)
T PRK02922 11 NFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQM 57 (67)
T ss_pred chhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999863 257999999999999997765543
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=47.19 E-value=26 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=26.0
Q ss_pred CeEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecc
Q psy3889 39 HTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 39 k~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
|.+|+-|-- |.|+-|..-.++-+++. +...+.+||+-
T Consensus 2 K~tLILfGK--P~C~vCe~~s~~l~~le--deY~ilrVNIl 38 (123)
T PHA03075 2 KKTLILFGK--PLCSVCESISEALKELE--DEYDILRVNIL 38 (123)
T ss_pred CceEEEeCC--cccHHHHHHHHHHHHhh--ccccEEEEEee
Confidence 568999999 99999955444445543 35567777763
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=46.09 E-value=36 Score=29.98 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=18.6
Q ss_pred cCCeEEEEEEecCCCCCCc-HHHHHHHH
Q psy3889 37 KFHTTLVKFDIAYPYGAKH-EAFLEVAE 63 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c-p~~~~lA~ 63 (243)
..+.+++.|.. |-|++| -.+.++..
T Consensus 116 ~ak~~I~vFtD--p~CpyC~kl~~~l~~ 141 (251)
T PRK11657 116 DAPRIVYVFAD--PNCPYCKQFWQQARP 141 (251)
T ss_pred CCCeEEEEEEC--CCChhHHHHHHHHHH
Confidence 45678999999 999999 44555443
No 227
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=46.00 E-value=1.8e+02 Score=24.38 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhh
Q psy3889 136 FDRLAKDFIRSASQERKTLLKSAEDLWDEIKT 167 (243)
Q Consensus 136 ~d~l~~~f~~~~~~~~~~~l~~~~~~~~~~~~ 167 (243)
|+.+.++...........++.++++.++.+..
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~aeei~~ 34 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIEKLEK 34 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665554445566677777777776543
No 228
>PF12137 RapA_C: RNA polymerase recycling family C-terminal; InterPro: IPR022737 This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with PF00271 from PFAM, PF00176 from PFAM. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3DMQ_A.
Probab=43.00 E-value=1.1e+02 Score=28.79 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHh--cccCChhhHHHHHHHhhHHHHhhh
Q psy3889 194 SEFLTREKARLKGLL--NQKVSAQKKDELKSRMNILDSFAL 232 (243)
Q Consensus 194 ~~~i~~E~~RL~~~l--~~~~~~~k~d~~~~r~NIL~~F~~ 232 (243)
...+..|++||+.+- +.++.++.++.++.+..-+.....
T Consensus 307 ~~~l~~Ei~RL~aL~~vNp~IR~~EI~~l~~~~~~~~~~i~ 347 (362)
T PF12137_consen 307 QQELDAEIERLKALQKVNPNIRDEEIEALEQQRQQLLQAID 347 (362)
T ss_dssp HHHHHHHHHHHHHHHTT-SS--THHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 455777999999986 678999999999999888777654
No 229
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=42.57 E-value=43 Score=26.75 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=24.5
Q ss_pred EEEEEecCCCCCCc-HHHHHHHHHccCCCCcEEEEE
Q psy3889 42 LVKFDIAYPYGAKH-EAFLEVAESSKHQPDFLVAEV 76 (243)
Q Consensus 42 lV~FyA~~pWC~~c-p~~~~lA~~~~~~~~v~vakV 76 (243)
=|..|+..|-|+.| ++++++...|. ++.+..+
T Consensus 98 ~i~l~te~~pC~SC~~vi~qF~~~~p---ni~~~v~ 130 (133)
T PF14424_consen 98 TIDLFTELPPCESCSNVIEQFKKDFP---NIKVNVV 130 (133)
T ss_pred eEEEEecCCcChhHHHHHHHHHHHCC---CcEEEEe
Confidence 36677888999999 99999998884 4555443
No 230
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=42.51 E-value=88 Score=19.82 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=27.8
Q ss_pred EEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 45 FDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 45 FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
|+. ++|+.|-....+.+... -.+.+..++..+ ....++.+..+-. +|++..
T Consensus 4 y~~--~~~~~~~~~~~~l~~~~--i~~~~~~~~~~~---~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 4 YYF--PGSPRSLRVRLALEEKG--LPYELVPVDLGE---GEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EeC--CCCccHHHHHHHHHHcC--CCcEEEEeCCCC---CCCHHHHhcCCCCCCCEEEE
Confidence 555 99999955444444432 234555555431 1112355555666 998863
No 231
>KOG2640|consensus
Probab=40.61 E-value=9.3 Score=35.02 Aligned_cols=66 Identities=9% Similarity=-0.089 Sum_probs=46.5
Q ss_pred cCCeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEec-------
Q psy3889 37 KFHTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFC------- 104 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~------- 104 (243)
+..+|=..||+ .|||.. |.|+-....|.. +...-| +++ ..-+....+|++. .|++.+-.
T Consensus 75 ~~~~vs~~fy~--s~C~fsr~~~~~fd~~~sl~~~---i~h~~v--ee~--~~lpsv~s~~~~~~~ps~~~~n~t~~~~~ 145 (319)
T KOG2640|consen 75 KNDYVSLLFYA--SWCPFSRAVRPEFDVRSSLFSS---IQHFAV--EES--QALPSVFSSYGIHSEPSNLMLNQTCPASY 145 (319)
T ss_pred cCCcccccchh--cccCcccccCcccchhhhhccc---cccccH--HHH--hhcccchhccccccCCcceeeccccchhh
Confidence 36688899999 999976 888877766642 222223 211 1347788999999 99999875
Q ss_pred ----cchHhhh
Q psy3889 105 ----VADSLNK 111 (243)
Q Consensus 105 ----~~~~l~~ 111 (243)
+..+|+.
T Consensus 146 ~~~r~l~sLv~ 156 (319)
T KOG2640|consen 146 RGERDLASLVN 156 (319)
T ss_pred cccccHHHHHH
Confidence 5667777
No 232
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.08 E-value=1.5e+02 Score=24.36 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhcccCChhhHHHHHH
Q psy3889 172 KSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQKVSAQKKDELKS 222 (243)
Q Consensus 172 ~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l~~~~~~~k~d~~~~ 222 (243)
.-+..|+++++.+-.. .+.+..|++||....+ ....+.+.|+.
T Consensus 40 ~K~~~~~~~Ik~~ea~------~e~~k~E~krL~~rkk--~~e~~~~~Lk~ 82 (162)
T PF05565_consen 40 EKADNIAKVIKNLEAD------IEAIKAEIKRLQERKK--SIENRIDRLKE 82 (162)
T ss_pred HHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4478889999988655 8899999999998652 33444455543
No 233
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.07 E-value=48 Score=25.55 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEEecc
Q psy3889 56 EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWAFCV 105 (243)
Q Consensus 56 p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~lF~~ 105 (243)
+....+.+.....+.. +.|.+| +.+=++|+|+ .||+.+-++
T Consensus 39 ~t~~~~~~l~~~~~~~--~~v~Id-------P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 39 PTAKAIQELLRKDDPC--PGVQID-------PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHhhccCCC--cceeEC-------hhHHhhCCceEcCEEEEEcC
Confidence 6666666655433332 455553 7889999999 999998775
No 234
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=36.82 E-value=28 Score=28.80 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHhhcCcc-CceEEEec
Q psy3889 87 EDLAKRGCLT-PQLLWAFC 104 (243)
Q Consensus 87 ~~l~~~~~V~-~PTi~lF~ 104 (243)
..++.+++|+ +||+++|.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 6788999999 99999997
No 235
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=35.12 E-value=10 Score=29.66 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=14.6
Q ss_pred cHHHHhhcCccCceEE
Q psy3889 86 NEDLAKRGCLTPQLLW 101 (243)
Q Consensus 86 n~~l~~~~~V~~PTi~ 101 (243)
-+++++.|||+|||++
T Consensus 52 lKe~e~~lgiSYPTvR 67 (113)
T PF09862_consen 52 LKEMEKELGISYPTVR 67 (113)
T ss_pred HHHHHHHHCCCcHHHH
Confidence 4889999999999987
No 236
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=35.07 E-value=1.4e+02 Score=21.46 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 56 EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 56 p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
....++.+.+- ..++.+--||+. +++++++.++|- .||++
T Consensus 20 ~nl~~i~e~~l-~~~~~LeVIDv~-----~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 20 QNLKRILEELL-GGPYELEVIDVL-----KQPQLAEEDKIVATPTLV 60 (72)
T ss_pred HHHHHHHHHhc-CCcEEEEEEEcc-----cCHhHHhhCCEEEechhh
Confidence 34445555543 457888889987 899999999999 99965
No 237
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=70 Score=27.35 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=25.6
Q ss_pred ceEcChhhHHHHh-cc-CCeEEEEEEecCCCCCCc-HHHHHHHHHcc
Q psy3889 23 HVSLDTHNFDKIL-SK-FHTTLVKFDIAYPYGAKH-EAFLEVAESSK 66 (243)
Q Consensus 23 v~~L~~~nF~~~v-~~-~k~vlV~FyA~~pWC~~c-p~~~~lA~~~~ 66 (243)
++.++.+.-+-++ +. .+.++|.|+. +-|++| -.|..+-+.+.
T Consensus 67 ~~~~~~~~~~~~~G~~~~~v~v~~f~d--~~Cp~C~~~~~~l~~~~i 111 (244)
T COG1651 67 VLYLTPDGKDVVLGNPYAPVTVVEFFD--YTCPYCKEAFPELKKKYI 111 (244)
T ss_pred eeeecCCCCcccccCCCCCceEEEEec--CcCccHHHHHHHHHHHhh
Confidence 3444444333333 22 2689999999 999999 45555544443
No 238
>PRK09301 circadian clock protein KaiB; Provisional
Probab=33.52 E-value=1.3e+02 Score=23.14 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=38.2
Q ss_pred CeEEEEEEecCCCCCCc----HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE-Eec
Q psy3889 39 HTTLVKFDIAYPYGAKH----EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW-AFC 104 (243)
Q Consensus 39 k~vlV~FyA~~pWC~~c----p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~-lF~ 104 (243)
.++|=-|.| .--+.. ....++.+..-. ..+.+--||+. +++++++.++|- .||++ .+|
T Consensus 6 ~~~LrLyVa--g~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~-----~qPelAE~~~IvATPTLIK~~P 69 (103)
T PRK09301 6 TYILKLYVA--GNTPNSVRALKTLKNILETEFK-GVYALKVIDVL-----KNPQLAEEDKILATPTLAKILP 69 (103)
T ss_pred eEEEEEEEe--CCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcc-----cCHhHHhHCCeEEecHHhhcCC
Confidence 456666666 333333 344455554433 24888888887 899999999999 99965 444
No 239
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=31.42 E-value=1.5e+02 Score=21.99 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE-Eec
Q psy3889 56 EAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW-AFC 104 (243)
Q Consensus 56 p~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~-lF~ 104 (243)
....++.+..-.+ .+.+--||+. +++++++.++|- .||++ .+|
T Consensus 22 ~nl~~i~e~~l~g-~y~LeVIDv~-----~qP~lAE~~~IvATPtLIK~~P 66 (87)
T TIGR02654 22 KTLKNILETEFQG-VYALKVIDVL-----KNPQLAEEDKILATPTLSKILP 66 (87)
T ss_pred HHHHHHHHHhcCC-ceEEEEEEcc-----cCHhHHhHCCEEEecHHhhcCC
Confidence 3444554544322 4888888887 899999999999 99965 444
No 240
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.07 E-value=41 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=16.8
Q ss_pred EEEecCCCCCCc----HHHHHHHHHccC
Q psy3889 44 KFDIAYPYGAKH----EAFLEVAESSKH 67 (243)
Q Consensus 44 ~FyA~~pWC~~c----p~~~~lA~~~~~ 67 (243)
.|.. |+|+.| |.+.++...+..
T Consensus 2 ~F~d--Plc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVD--PLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE---TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeC--CCChHHHHhHHHHHHHHHHcCC
Confidence 3788 999999 999999999864
No 241
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=31.05 E-value=1.2e+02 Score=27.00 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecc
Q psy3889 40 TTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79 (243)
Q Consensus 40 ~vlV~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~ 79 (243)
.|+=.|++ .-|..||--++....++.+++|+-....+|
T Consensus 43 ~VVELfTS--QGCsSCPPAd~~l~k~a~~~~vlALsyhVd 80 (261)
T COG5429 43 GVVELFTS--QGCSSCPPADANLAKLADDPGVLALSYHVD 80 (261)
T ss_pred eEEEEeec--CCcCCCChHHHHHHHhccCCCEEEEEEeec
Confidence 34444666 789999554554445555667654444443
No 242
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=27.85 E-value=36 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=14.4
Q ss_pred hhHHHHhccCCeEEEEEEecCCCCCC
Q psy3889 29 HNFDKILSKFHTTLVKFDIAYPYGAK 54 (243)
Q Consensus 29 ~nF~~~v~~~k~vlV~FyA~~pWC~~ 54 (243)
+.|.+.++++..|++ |||+.
T Consensus 2 eE~k~~i~~gg~v~~------pwcg~ 21 (68)
T PF09180_consen 2 EEFKEAIEKGGFVLV------PWCGD 21 (68)
T ss_dssp HHHHHHHHTSSEEEE------EES-S
T ss_pred hHHHHHHhCCCEEEE------EccCC
Confidence 467777877777775 99997
No 243
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=27.43 E-value=1.9e+02 Score=19.23 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=30.0
Q ss_pred EEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEE
Q psy3889 44 KFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLW 101 (243)
Q Consensus 44 ~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~ 101 (243)
.|+. |+|+.|-.-.-+.+... -++.+..||..+ ++....++.+..... +|++.
T Consensus 3 Ly~~--~~~~~~~~v~~~l~~~g--i~~e~~~i~~~~-~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 3 LYYL--PGSPPCRAVLLTAKALG--LELNLKEVNLMK-GEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEeC--CCCCcHHHHHHHHHHcC--CCCEEEEecCcc-CCcCCHHHHhhCcCCCCCEEE
Confidence 3667 99999943333444432 235555665421 222336666666666 99985
No 244
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=26.57 E-value=1.9e+02 Score=18.96 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=28.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 44 KFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 44 ~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
.|+. |||+.|-...-+..... -.+....++... ++....++.+...-. +|++..
T Consensus 3 Ly~~--~~s~~~~~~~~~L~~~~--l~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDS--PTAPNPRRVRIFLAEKG--IDVPLVTVDLAA-GEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeC--CCCcchHHHHHHHHHcC--CCceEEEeeccc-CccCCHHHHhhCCCCCCCEEEe
Confidence 3556 89999943333333332 234455665421 111234555555555 999874
No 245
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.73 E-value=2.2e+02 Score=19.52 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=26.2
Q ss_pred EEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 45 FDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 45 FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++. ++|+.|-.-..+..+. ++.+-.+++.. ++....++...-+-. +|++..
T Consensus 5 y~~--~~sp~~~kv~~~L~~~----gi~y~~~~v~~-~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 5 YEF--EGSPFCRLVREVLTEL----ELDVILYPCPK-GSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ecC--CCCchHHHHHHHHHHc----CCcEEEEECCC-ChHHHHHHHHhCCCCcccEEEe
Confidence 555 8999995444444443 23333455531 111224444444445 999864
No 246
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=25.18 E-value=1.2e+02 Score=26.02 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=20.0
Q ss_pred EEEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCC
Q psy3889 44 KFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYG 82 (243)
Q Consensus 44 ~FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~ 82 (243)
.|++ -.|..||-=+++-..++..++|+.....+|.+|
T Consensus 4 LFTS--QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWD 40 (202)
T PF06764_consen 4 LFTS--QGCSSCPPADRLLSELAARPDVIALAFHVDYWD 40 (202)
T ss_dssp EEE---TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-
T ss_pred EecC--CCCCCCcHHHHHHHHhhcCCCEEEEEecCCccc
Confidence 3666 789999655555555544458877777765444
No 247
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.71 E-value=94 Score=25.17 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCCc----HHHHHHHHHcc
Q psy3889 42 LVKFDIAYPYGAKH----EAFLEVAESSK 66 (243)
Q Consensus 42 lV~FyA~~pWC~~c----p~~~~lA~~~~ 66 (243)
+..|+. |.|+.| |.++++.+.+.
T Consensus 3 i~~~~D--~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFID--PLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEEC--CCCchhhCchHHHHHHHHHhC
Confidence 456777 999999 99999998883
No 248
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=24.63 E-value=89 Score=27.63 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=33.9
Q ss_pred ccCCeEEEEEEecCCCCCCc----HHHHHHHHHcc--CCCCcEEEEEecc
Q psy3889 36 SKFHTTLVKFDIAYPYGAKH----EAFLEVAESSK--HQPDFLVAEVGVK 79 (243)
Q Consensus 36 ~~~k~vlV~FyA~~pWC~~c----p~~~~lA~~~~--~~~~v~vakVd~~ 79 (243)
..++.++|.+-. .+|..| ..++.|...+. +-++|.+.-||-.
T Consensus 24 ~~G~VtvVALL~--asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQ--ASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehh--hhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 457899999999 899999 67777777763 4568999999865
No 249
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.17 E-value=5e+02 Score=24.92 Aligned_cols=72 Identities=6% Similarity=-0.068 Sum_probs=48.0
Q ss_pred cChhhHHHHh-ccCCeEEEEEEecCCCCCCcHHHHHHHHHcc-CCCCcEEEEEecccCCCcccHHHHhhcCcc-CceEEE
Q psy3889 26 LDTHNFDKIL-SKFHTTLVKFDIAYPYGAKHEAFLEVAESSK-HQPDFLVAEVGVKDYGERDNEDLAKRGCLT-PQLLWA 102 (243)
Q Consensus 26 L~~~nF~~~v-~~~k~vlV~FyA~~pWC~~cp~~~~lA~~~~-~~~~v~vakVd~~d~~~~~n~~l~~~~~V~-~PTi~l 102 (243)
++.+-.+++- -.+..-+=-|++ -.|..||..-+.-+.+. -+|++.-..||.- -.++=.+.-+|. .||+++
T Consensus 103 ~~q~vieqik~i~g~~~FETy~S--ltC~nCPDVVQALN~msvlNp~I~H~~IdGa-----~Fq~Evear~IMaVPtvfl 175 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFS--LTCHNCPDVVQALNLMSVLNPRIKHTAIDGA-----LFQDEVEARNIMAVPTVFL 175 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEE--eeccCChHHHHHHHHHHhcCCCceeEEecch-----hhHhHHHhccceecceEEE
Confidence 4444445543 245566777888 89999987666655542 3578877778764 455556667899 999986
Q ss_pred ec
Q psy3889 103 FC 104 (243)
Q Consensus 103 F~ 104 (243)
=-
T Consensus 176 nG 177 (520)
T COG3634 176 NG 177 (520)
T ss_pred cc
Confidence 43
No 250
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=23.09 E-value=36 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=19.9
Q ss_pred CceEcChhhHHHHhccCCeEEEEEEecCCC
Q psy3889 22 GHVSLDTHNFDKILSKFHTTLVKFDIAYPY 51 (243)
Q Consensus 22 ~v~~L~~~nF~~~v~~~k~vlV~FyA~~pW 51 (243)
+-.-|++..|+.+...+++|+..|.. |||
T Consensus 83 hPhglsd~~Fd~lFT~DkPViFafHG-Yp~ 111 (203)
T PF09363_consen 83 HPHGLSDEEFDALFTKDKPVIFAFHG-YPW 111 (203)
T ss_dssp -TTS--HHHHHHHH-SSS-EEEEESS-EHH
T ss_pred CCCcCCHHHHHHhcCCCCCEEEEcCC-CHH
Confidence 34458899999999999999999986 555
No 251
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.43 E-value=1.4e+02 Score=22.28 Aligned_cols=45 Identities=4% Similarity=-0.038 Sum_probs=27.6
Q ss_pred EEecCCCCCCcHHHHHHHHHccCCCCcEEEEEecccCCCcccHHHHhhcCcc
Q psy3889 45 FDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERDNEDLAKRGCLT 96 (243)
Q Consensus 45 FyA~~pWC~~cp~~~~lA~~~~~~~~v~vakVd~~d~~~~~n~~l~~~~~V~ 96 (243)
||. -+|+.|-.+.+..........+.+.-+.-. ...++...++++
T Consensus 2 ~YD--g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~-----~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYD--GDCPLCRREVRFLRRRDRGGRLRFVDIQSE-----PDQALLASYGIS 46 (114)
T ss_pred EEC--CCCHhHHHHHHHHHhcCCCCCEEEEECCCh-----hhhhHHHhcCcC
Confidence 677 899999777776666644445666555211 334455666654
No 252
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=22.43 E-value=5.2e+02 Score=27.70 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=46.2
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhcc--cCChhhHH
Q psy3889 141 KDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQ--KVSAQKKD 218 (243)
Q Consensus 141 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l~~--~~~~~k~d 218 (243)
..|+.+++.+|.++++++ + ....|.++.+++-++ ..-...+++.|+.-+.+ -++++...
T Consensus 159 ~~fl~a~~~eR~~il~~l------~-------g~~~y~~~~~~l~er------~k~~~~~l~~l~~~l~~~~~ls~e~~~ 219 (1047)
T PRK10246 159 AAFLNAKPKERAELLEEL------T-------GTEIYGQISAMVFEQ------HKSARTELEKLQAQASGVALLTPEQVQ 219 (1047)
T ss_pred HHHHhCChHHHHHHHHHH------h-------CcHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCcCCCHHHHH
Confidence 467787778899999887 1 234666777777665 55566677777766632 46777777
Q ss_pred HHHHHhhHHH
Q psy3889 219 ELKSRMNILD 228 (243)
Q Consensus 219 ~~~~r~NIL~ 228 (243)
.+...++.|.
T Consensus 220 ~l~~~~~~l~ 229 (1047)
T PRK10246 220 SLTASLQVLT 229 (1047)
T ss_pred HHHHHHHHHH
Confidence 7776665554
No 253
>KOG1498|consensus
Probab=21.97 E-value=2.4e+02 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHh
Q psy3889 171 RKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLL 208 (243)
Q Consensus 171 ~~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l 208 (243)
.+.--..+..++-+ .. |.=|++-|.+||.++|
T Consensus 106 ~~~k~~li~tLr~V-te-----gkIyvEvERarlTk~L 137 (439)
T KOG1498|consen 106 LETKIKLIETLRTV-TE-----GKIYVEVERARLTKML 137 (439)
T ss_pred chhHHHHHHHHHHh-hc-----CceEEeehHHHHHHHH
Confidence 34445666677666 44 6999999999999998
No 254
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=21.15 E-value=3.8e+02 Score=20.47 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=33.3
Q ss_pred cCCeEEEEEEecCCCCCCcH---HHHHHHHHccCCCCcEEEEEecccCCCc
Q psy3889 37 KFHTTLVKFDIAYPYGAKHE---AFLEVAESSKHQPDFLVAEVGVKDYGER 84 (243)
Q Consensus 37 ~~k~vlV~FyA~~pWC~~cp---~~~~lA~~~~~~~~v~vakVd~~d~~~~ 84 (243)
+++.+||-=.| +.|+.-+ .++++-+.|+ +..+.|.-.-|.+++.+
T Consensus 20 ~Gkv~LIVNvA--s~Cg~t~qy~~L~~L~~ky~-~~gl~ILaFPcnqFg~Q 67 (108)
T PF00255_consen 20 KGKVLLIVNVA--SKCGYTKQYKQLNELYEKYK-DKGLEILAFPCNQFGNQ 67 (108)
T ss_dssp TTSEEEEEEEE--SSSTTHHHHHHHHHHHHHHG-GGTEEEEEEEBSTTTTT
T ss_pred CCCEEEEEecc--cccCCccccHHHHHHHHHHh-cCCeEEEeeehHHhccc
Confidence 67888888889 9999874 5555555664 34688999999877644
No 255
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=20.51 E-value=91 Score=25.16 Aligned_cols=23 Identities=9% Similarity=-0.182 Sum_probs=19.3
Q ss_pred EEEEEEecCCCCCCc----HHHHHHHHHc
Q psy3889 41 TLVKFDIAYPYGAKH----EAFLEVAESS 65 (243)
Q Consensus 41 vlV~FyA~~pWC~~c----p~~~~lA~~~ 65 (243)
++..|+. +-||+| +.+.++.+.+
T Consensus 1 ~i~~~~D--~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 1 TIEFFFD--FICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEEB--TTBHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence 4677888 999999 8888888887
No 256
>KOG2757|consensus
Probab=20.37 E-value=7.5e+02 Score=23.54 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhcccCCh---hhHHHHHHHhhH
Q psy3889 171 RKSAEFYVKTMRKLVEISGEGSESEFLTREKARLKGLLNQKVSA---QKKDELKSRMNI 226 (243)
Q Consensus 171 ~~~a~~Y~kvm~ki~~~~~~~~g~~~i~~E~~RL~~~l~~~~~~---~k~d~~~~r~NI 226 (243)
.+.+++-..+++++... ..+-++.-+.+|.+-+++..+. ..++++..++|.
T Consensus 180 e~~~~~l~~~Fs~lM~~-----~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~k 233 (411)
T KOG2757|consen 180 EDSKKVLKLCFSRLMKA-----EENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNK 233 (411)
T ss_pred hHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHh
Confidence 45567777788888776 5666777777777766444443 777899999884
No 257
>KOG3478|consensus
Probab=20.37 E-value=1.4e+02 Score=23.43 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHh
Q psy3889 194 SEFLTREKARLKGLL 208 (243)
Q Consensus 194 ~~~i~~E~~RL~~~l 208 (243)
-+||.+|++|+++-+
T Consensus 78 lefI~~Eikr~e~~i 92 (120)
T KOG3478|consen 78 LEFISKEIKRLENQI 92 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999999866
No 258
>smart00302 GED Dynamin GTPase effector domain.
Probab=20.36 E-value=1.7e+02 Score=21.46 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=21.9
Q ss_pred HHHHHh-cccCChhhHHHHHHHhhHHHHhh
Q psy3889 203 RLKGLL-NQKVSAQKKDELKSRMNILDSFA 231 (243)
Q Consensus 203 RL~~~l-~~~~~~~k~d~~~~r~NIL~~F~ 231 (243)
.+..|| +..--.++|..++.|+..|+.-.
T Consensus 57 ~~~~LL~E~~~i~~kR~~~~~~l~~L~~A~ 86 (92)
T smart00302 57 LLDELLEEDPEIASKRKELKKRLELLKKAR 86 (92)
T ss_pred cHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356667 55677789999999999888654
Done!