RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3889
(243 letters)
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 106
Score = 91.0 bits (226), Expect = 3e-24
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 131 GCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISGE 190
GC+++F+ + K++ E+ L++ + +++ +++A Y+ MRK+ E
Sbjct: 3 GCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHE---- 58
Query: 191 GSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSF 230
+FL E RL L KV+ KK+EL ++NIL+ F
Sbjct: 59 -VGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVF 97
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,
C-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 88.3 bits (219), Expect = 4e-23
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 131 GCLQDFDRLAKDFIRSASQE-RKTLLKSAEDLWDEIKTNSARKSAEFYVKTMRKLVEISG 189
GCL +D LA FI ++S+E R+ +LK +D +K + +K A Y+K M K+++
Sbjct: 2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVK-ETDKKWASQYLKIMGKILD--- 57
Query: 190 EGSESEFLTREKARLKGLLNQKVSAQKKDELKSRMNILDSFALYVKSSGGRDEL 243
+F E AR+ L+ K+S KK+EL+ +NIL +F K ++EL
Sbjct: 58 --QGEDFPASELARISKLIENKMSEGKKEELQRSLNILTAFR---KKGAEKEEL 106
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 60.8 bits (147), Expect = 1e-12
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 20 SKGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVK 79
+KG + LDT F K++ K LVKFD YPYG K + F +AE+S D LVAEVG+
Sbjct: 3 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 62
Query: 80 DYGERDNEDLAKR 92
DYG++ N +L+++
Sbjct: 63 DYGDKLNMELSEK 75
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 56.2 bits (135), Expect = 6e-11
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 21 KGHVSLDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQ-PDFLVAEVGVK 79
G V LD +F+K + +F ++VKFDIA PYG KHEAF ++S+ D L+A VGVK
Sbjct: 2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVK 61
Query: 80 DYGERDNEDLAKR 92
DYGE +N+ L R
Sbjct: 62 DYGELENKALGDR 74
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 328
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 126 WIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTN 168
I A +D+ + +R A++ L ++A DLW +I N
Sbjct: 277 MILARNENRDYLTEGPEILREAAKTCGAL-RTALDLWKDITFN 318
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 325
Score = 26.7 bits (59), Expect = 2.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 126 WIGAVGCLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTN 168
+ A +D R + IRSA + L +A ++W IK
Sbjct: 277 CVQARNEGRDLAREGNEIIRSACKWSPEL-AAACEIWKAIKFE 318
>d1rsob_ a.194.1.1 (B:) Peripheral plasma membrane protein cask {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 56
Score = 23.5 bits (51), Expect = 6.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 132 CLQDFDRLAKDFIRSASQERKTLLKSAEDLWDEIKTNS 169
L D DF+ S Q++ L + DL+D+I T S
Sbjct: 21 ALTDSSEKDLDFLHSVFQDQH--LHTLLDLYDKINTKS 56
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium
salinarum [TaxId: 2242]}
Length = 227
Score = 25.4 bits (55), Expect = 6.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 101 WAFCVADSLNKTLFILIIFFS 121
F V D K F LI+ S
Sbjct: 202 LLFMVLDVSAKVGFGLILLRS 222
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp.
[TaxId: 2243]}
Length = 236
Score = 25.0 bits (54), Expect = 7.9
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 101 WAFCVADSLNKTLFILIIFFS 121
F V D K F I+ S
Sbjct: 212 LLFMVLDVTAKVGFGFILLRS 232
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 25.3 bits (55), Expect = 7.9
Identities = 10/66 (15%), Positives = 19/66 (28%)
Query: 26 LDTHNFDKILSKFHTTLVKFDIAYPYGAKHEAFLEVAESSKHQPDFLVAEVGVKDYGERD 85
L T F + T + D +P EA + + + + V +
Sbjct: 128 LTTAEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDE 187
Query: 86 NEDLAK 91
A+
Sbjct: 188 AMGPAR 193
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein,
SHARP {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 24.7 bits (54), Expect = 9.1
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 172 KSAEFYVKTMRKLVEISGEGSESEFLTREKAR---LKGLLNQKVSAQKKDELKSRMNILD 228
K+ V+ L +SG + L+ ++ A + + + RM +
Sbjct: 22 KNDTAAVQ----LHFVSGNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMTVET 77
Query: 229 SFALYVKSSGGRDE 242
+ L + GRD+
Sbjct: 78 DYCLLLALPCGRDQ 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.395
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 846,815
Number of extensions: 36584
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 21
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)