BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3895
         (185 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 35.8 bits (81), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 73  VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
           +C   H E D  +  + PC C G+  +VHQACL +WI
Sbjct: 17  ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 53


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 30.0 bits (66), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 67  DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 126
           D+  CW+C     ++R     + C C G  + VH++CL+ W+   +        AC  C 
Sbjct: 5   DVPVCWICNEELGNER----FRACGCTGELENVHRSCLSTWLTISR------NTACQICG 54

Query: 127 TKY 129
             Y
Sbjct: 55  VVY 57


>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
          Length = 521

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 11  SLVNEAVLMAIQRHGLQHQQDEDQDETSSSVQSPPGVIQSKSDSAGVVVLEIERSVDLKY 70
           +L  EA    I  HG  HQ +       +S+ S   V    S +AG ++L+I+    L  
Sbjct: 259 ALTEEAFTRIIDNHGAWHQSNSAAGTPYASMHS---VFYLNSRAAGQILLDIQIDGGLDG 315

Query: 71  CWVCFATHEDDRN-ALWVQPCLCRGTSKWVHQACLNR 106
                       N    V+P + R T  W+     N+
Sbjct: 316 AEALLNDFVAAVNEGTGVEPAVQRSTEPWLRATLANK 352


>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
           Scattering Curve-Fitting And Homology Modelling
          Length = 1213

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 92  CRGTSKWVHQACLN-RWIDEKQKGNAFTQVACP 123
           CRG   W+H  C+N RW  E     A  Q+ CP
Sbjct: 763 CRGKEGWIHTVCINGRWDPEVNCSMAQIQL-CP 794


>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
           Nacl Buffer
 pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
           Nacl Buffer
 pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
           Nacl Buffer
          Length = 1213

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 92  CRGTSKWVHQACLN-RWIDEKQKGNAFTQVACP 123
           CRG   W+H  C+N RW  E     A  Q+ CP
Sbjct: 763 CRGKEGWIHTVCINGRWDPEVNCSMAQIQL-CP 794


>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
 pdb|3K1L|A Chain A, Crystal Structure Of Fancl
          Length = 381

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 71  CWVCFATHEDDRNALWVQPCLCRGTSKWV---HQACLNRWIDEKQKGNAFTQVA---CPQ 124
           C +CFA   D        P +    +K V   H  CL  W      G  F +V+   CP 
Sbjct: 311 CNICFAYRLDGGEV----PLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 125 CNTK 128
           C  K
Sbjct: 367 CKAK 370


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,314,926
Number of Sequences: 62578
Number of extensions: 193073
Number of successful extensions: 389
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 8
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)