BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3895
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+ CWVCFAT EDDR A WV+PC CRG++KWVHQACL RW+DEKQ+GN+ +VACPQCN +
Sbjct: 15 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAE 74
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHKD 184
Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM V HK+
Sbjct: 75 YLIVFPNLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKE 132
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+ CWVCFAT EDDR A WV+PC CRG++KWVHQACL RW+DEKQ+GN+ +VACPQCN +
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAE 71
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHKD 184
Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM V HK+
Sbjct: 72 YLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKE 129
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+ CWVCFAT EDDR A WV+PC CRG++KWVHQACL RW+DEKQ+GN+ +VACPQCN +
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAE 71
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHKD 184
Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM V HK+
Sbjct: 72 YLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKE 129
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+ CWVCFAT EDDR A WV+PC CRG++KWVHQACL RW+DEKQ+GN+ +VACPQCN +
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAE 71
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHKD 184
Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM V HK+
Sbjct: 72 YLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKE 129
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+ CWVCFAT EDDR A WV+PC CRG++KWVHQACL RW+DEKQ+GN+ +VACPQCN +
Sbjct: 12 RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAE 71
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHKD 184
Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM V HK+
Sbjct: 72 YLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKE 129
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5 PE=2
SV=1
Length = 281
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 98/127 (77%), Gaps = 3/127 (2%)
Query: 60 LEIERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQ 119
L + +++D + CWVCFAT EDDR A WV+PC CRG++KWVHQ CL RW+DEKQ+GN+ +
Sbjct: 7 LALPQTMD-RSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTAR 65
Query: 120 VACPQCNTKYFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM 179
VACPQCN +Y IV+P G +V +LD D + K CPF AAG+++GS+YW AVTYGAVTVM
Sbjct: 66 VACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVTVM 125
Query: 180 --VHHKD 184
V HK+
Sbjct: 126 QVVGHKE 132
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 89/117 (76%), Gaps = 2/117 (1%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
K+CWVCFAT ++DR A WV PC C+G +KW+HQ+CL RW+DEKQKGN+ V+CPQC T+
Sbjct: 10 KHCWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTE 69
Query: 129 YFIVYPYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCAVTYGAVTVM--VHHK 183
Y IV+P G +V L +D A+ + PF AAGVV+G++YW AVTYGAVTVM V HK
Sbjct: 70 YRIVFPKMGPVVYFLQQVDRALSRASPFAAAGVVVGTVYWSAVTYGAVTVMQVVGHK 126
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 88 QPCLCRGTSKWVHQACLNRWIDEKQKGN--------AFTQVACPQCNTKYFIVYPYRGLL 139
PC+C G+ K++HQ CL +W+ +K AFT + P ++ P + +
Sbjct: 24 HPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSR----LPIQDIF 79
Query: 140 VSLLDTIDTAV-----YKLCPFVAAGVV 162
L+ +I TA+ Y L F GVV
Sbjct: 80 AGLVTSIGTAIRYWFHYTLVAFAWLGVV 107
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 88 QPCLCRGTSKWVHQACLNRWIDEKQKGN--------AFTQVACPQCNTKYFIVYPYRGLL 139
PC+C G+ K++HQ CL +W+ +K AFT + P ++ P + +
Sbjct: 24 HPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSR----LPIQDIF 79
Query: 140 VSLLDTIDTAV-----YKLCPFVAAGVV 162
L+ +I TA+ Y L F GVV
Sbjct: 80 AGLVTSIGTAIRYWFHYTLVAFAWLGVV 107
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 88 QPCLCRGTSKWVHQACLNRWIDEKQKGN--------AFTQVACPQCNTKYFIVYPYRGLL 139
PC+C G+ K++HQ CL +W+ +K AFT + P ++ P + +
Sbjct: 24 HPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSR----LPIQDIF 79
Query: 140 VSLLDTIDTAV-----YKLCPFVAAGVV 162
L+ +I TA+ Y L F GVV
Sbjct: 80 AGLVTSIGTAIRYWFHYTLVAFAWLGVV 107
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
K CW+C + + RN C CRG +K VH+ CL WI+ N +C C T
Sbjct: 15 KCCWICKESCDVVRNY-----CKCRGDNKIVHKECLEEWINTDTVKNK----SCAICETP 65
Query: 129 YFIVYPYRGL 138
Y + Y+ L
Sbjct: 66 YNVKQQYKKL 75
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 57 VVVLEIERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNA 116
V+ +E D +C +C HE + PC C GT VH++CL RW+
Sbjct: 50 TVIRALETPSDGPFCRIC---HEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSY- 105
Query: 117 FTQVACPQCNTKYFIVYPYRGL 138
C C+T++ + R L
Sbjct: 106 -----CELCHTEFAVEKRSRSL 122
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK-QKGNAFTQV-ACPQCNTK 128
C +C N L ++PC C G+ ++VHQ C+ +W+ K G++ V C C K
Sbjct: 553 CRICQMAAASSSNLL-IEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK-QKGNAFTQV-ACPQCNTK 128
C +C N L ++PC C G+ ++VHQ C+ +W+ K G++ V C C K
Sbjct: 554 CRICQMAAASSSNLL-IEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 612
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK-QKGNAFTQV-ACPQCNTK 128
C +C N L ++PC C G+ ++VHQ C+ +W+ K G++ V C C K
Sbjct: 552 CRICQMAAASSSNLL-IEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEK 610
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK-QKGNAFTQV-ACPQCNTK 128
C +C N L ++PC C G+ ++VHQ C+ +W+ K G++ V C C K
Sbjct: 552 CRICQMAAASSSNLL-IEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEK 610
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 2 SRQRERNERSLVNEAVLMAIQRHGLQHQQDEDQDETSSSVQSPPGVIQSKSDSAGVVVLE 61
++ +E+NE++L H + H + S + SPP S + V
Sbjct: 26 TKDKEQNEKTL----------GHSMSHPSN-----ISKAGSSPPSTTAPVSAFSRTSVTP 70
Query: 62 IERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+ + C +C E D + + PC C G+ +VHQACL +WI
Sbjct: 71 SNQDI----CRICHC--EGDDESPLITPCHCTGSLHFVHQACLQQWI 111
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 44 PPGVIQSKSDSAGVVVLEIERSVDLKY-CWVCFATHEDDRNALWVQPCLCRGTSKWVHQA 102
PP + + G ++ + R++D + C C HE + PC C GT VH++
Sbjct: 33 PPQYVAQVTSRDGRLLSTVIRALDSQSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKS 92
Query: 103 CLNRWIDEKQKGNAFTQVACPQCNTKYFI 131
CL +W+ C C+T++ +
Sbjct: 93 CLEKWLSSSNTSY------CELCHTEFAV 115
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 44 PPGVIQSKSDSAGVVVLEIERSVDLKY-CWVCFATHEDDRNALWVQPCLCRGTSKWVHQA 102
PP + + G ++ + R++D C C HE + PC C GT VH++
Sbjct: 33 PPQYVAQVTSRDGRLLSTVIRALDTPSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKS 92
Query: 103 CLNRWIDEKQKGNAFTQVACPQCNTKYFI 131
CL +W+ C C+T++ +
Sbjct: 93 CLEKWLSSSNTSY------CELCHTEFAV 115
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK 111
C +C +D N L+ PC CRG+ K++H++CL W+ K
Sbjct: 39 CRICRGEATED-NPLF-HPCKCRGSIKYMHESCLLEWVASK 77
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C GT ++VHQ+CL++WI
Sbjct: 79 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWI 115
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C GT ++VHQ+CL++WI
Sbjct: 79 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWI 115
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 43 SPPGVIQSKSDSAGVVVLEIERSVDLK----YCWVCFATHEDDRNALWVQPCLCRGTSKW 98
PP + + G ++ + R++D +C +C HE + PC C GT
Sbjct: 32 GPPQYVAQVTSRDGRLLSTVIRALDTPSDGPFCRIC---HEGANGECLLSPCGCTGTLGA 88
Query: 99 VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131
VH++CL +W+ C C+T++ +
Sbjct: 89 VHKSCLEKWLSSSNTSY------CELCHTEFAV 115
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNA--FTQVACPQCNTK 128
C +C N L ++PC C G+ ++VHQ CL +W+ K A T C C
Sbjct: 641 CRICQIAGGSPANPL-LEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCK-- 697
Query: 129 YFIVYPYRGLLVSLLDTIDTAVY 151
+GLLV L D T Y
Sbjct: 698 -------QGLLVDLDDFNMTEFY 713
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 37.4 bits (85), Expect = 0.053, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ 124
+ D + C VC E ++ PC C G+ ++VHQ CL W+ +K + C
Sbjct: 2 NADDEICRVCRC--EGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTH------CEL 53
Query: 125 CNTKY 129
C K+
Sbjct: 54 CKAKF 58
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 69 KYCWVCFATHEDDRNALWVQP--CLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 126
K CW+C + A + P C CRG +K VH+ CL WI+ N +C C
Sbjct: 21 KCCWIC-------KEACDIVPNYCKCRGDNKIVHKECLEEWINTDVVKNK----SCAICE 69
Query: 127 TKYFIVYPYRGL 138
+ Y + Y+ +
Sbjct: 70 SPYNLKRRYKKI 81
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
C +CF E + PC C G+ + HQ CL RWI E+ +C C KY
Sbjct: 110 CRICFQGPEQGE---LLSPCRCDGSVRCTHQPCLIRWISER------GSWSCELCYFKYQ 160
Query: 131 IVY-----PYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCA 170
++ P + +SL T + K+ A +VLGS++ A
Sbjct: 161 VLAISTKNPLQWQAISL-----TVIEKV---QIAAIVLGSLFLVA 197
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
C +CF E + PC C G+ + HQ CL RWI E+ +C C KY
Sbjct: 110 CRICFQGPEQGE---LLSPCRCDGSVRCTHQPCLIRWISER------GSWSCELCYFKYQ 160
Query: 131 IVY-----PYRGLLVSLLDTIDTAVYKLCPFVAAGVVLGSMYWCA 170
++ P + +SL T + K+ A +VLGS++ A
Sbjct: 161 VLAISTKNPLQWQAISL-----TVIEKV---QIAAIVLGSLFLVA 197
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
C +CF E + PC C G+ ++ HQ CL +WI E+ ++T C C +Y
Sbjct: 170 CKICFQGAEQGE---LLNPCRCDGSVRYTHQLCLLKWISER---GSWT---CELCCYRYH 220
Query: 131 IV 132
++
Sbjct: 221 VI 222
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C G+ +VHQACL +WI
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 115
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
CW+C + ++N C C+ K VH C+ +WI ++ +C CN +Y
Sbjct: 5 CWICKDDYSIEKNY-----CNCKNEYKVVHDECMKKWIQYSRER------SCKLCNKEYN 53
Query: 131 IV---YPYRGLLVSLLDTIDTAVYK----LCPFVAAGVV 162
I+ P+ + S+ D +A+ LC F+ + V+
Sbjct: 54 IISVRKPFSQWVFSIKDCKKSAILYATLFLCTFIISLVL 92
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK 111
C +CF E + PC C G+ ++ HQ CL +WI E+
Sbjct: 168 CKICFQGAEQGE---LLNPCRCDGSVRYTHQLCLLKWISER 205
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK 111
C +CF E + PC C G+ ++ HQ CL +WI E+
Sbjct: 166 CKICFQGAEQGE---LLNPCRCDGSVRYTHQLCLLKWISER 203
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 62 IERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEK 111
++ + C +CF E + PC C G+ K HQ CL +WI E+
Sbjct: 154 LDSGMRTPLCRICFQGPEQGE---LLSPCRCDGSVKCTHQPCLIKWISER 200
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQV--ACPQCNTK 128
C +C N L ++PC C G+ ++VHQ CL +W+ K A C C
Sbjct: 659 CRICQIAGGSPSNPL-LEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCK-- 715
Query: 129 YFIVYPYRGLLVSLLD 144
+GLLV L D
Sbjct: 716 -------QGLLVDLGD 724
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C G+ +VHQACL +WI
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 88
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C G+ +VHQACL +WI
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 88
>sp|O74371|YG87_SCHPO Uncharacterized RING finger protein C32F12.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC32F12.07c PE=4 SV=1
Length = 340
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 71 CWVCFATHEDD----RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 126
CW+C+ ++ N W +PC C S H++CL +I CPQC
Sbjct: 14 CWICYEEYDKKLCSLSNDSWRRPCRC---SLIAHESCLISYITRSGSTR------CPQCL 64
Query: 127 TKYFIVYP 134
T Y I P
Sbjct: 65 TAYRIAKP 72
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 62 IERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVA 121
++ + C +CF E + PC C G+ K HQ CL +WI E+ +
Sbjct: 153 LDSGMRTPLCRICFQGPEQGE---LLSPCRCDGSVKCTHQPCLIKWISER------GCWS 203
Query: 122 CPQCNTKYFIV 132
C C KY ++
Sbjct: 204 CELCYYKYHVI 214
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 35 DETSSSVQSPPGVIQSKSDSAGVVVLEIERSVDLK----------YCWVCFATHEDDRNA 84
D+ + SV PP + S S +++ + L C +CF E
Sbjct: 97 DDWTHSVVDPPRTLDCCSSSEDCSKEKLDERLSLNSCTDSGVRTPLCRICFQGPEQGE-- 154
Query: 85 LWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVY-----PYRGLL 139
+ PC C G+ + H+ CL +WI E+ +C C KY ++ P +
Sbjct: 155 -LLSPCRCSGSVRCTHEPCLIKWISERGSW------SCELCYYKYQVIAISTKNPLQWQA 207
Query: 140 VSLLDTIDTAVYKLCPFVAAGVVLGSMYWCA 170
+SL T + K+ A VLGS++ A
Sbjct: 208 ISL-----TVIEKV---QIAAAVLGSLFLIA 230
>sp|Q6TV02|LAP_YMTV5 E3 ubiquitin-protein ligase LAP OS=Yaba monkey tumor virus (strain
VR587) GN=LAP PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
CW+C T D+RN C+C K VH C+ WI+ +K V C C KY
Sbjct: 5 CWICNDTC-DERNNF----CICSEEYKIVHLKCMQSWINYSKK------VECDLCKNKYN 53
Query: 131 IVYPY 135
I Y
Sbjct: 54 IKKSY 58
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 73 VCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131
+C HE + PC C GT VH+ CL +W+ C C+T++ +
Sbjct: 63 ICRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSY------CELCHTEFAV 115
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 73 VCFATH-EDDRNALWVQPCLCRGTSKWVHQACLNRWI 108
+C H E D + + PC C G+ +VHQ CL +WI
Sbjct: 77 ICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWI 113
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 73 VCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131
+C HE + PC C GT VH+ CL +W+ C C+T++ +
Sbjct: 63 ICRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTS------YCELCHTEFAV 115
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 35 DETSSSVQSPPGVIQSKSDSAGVVVLEIERSV------DLKYCWVCFATHEDDRNALWVQ 88
++ SS V P + S G ++ + R++ D C +C HE +
Sbjct: 27 EDCSSLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSFNDRPMCRIC---HEGSTQEDLLS 83
Query: 89 PCLCRGTSKWVHQACLNRWIDEKQ 112
PC C GT +H++CL W+
Sbjct: 84 PCECTGTLGTIHRSCLEHWLSSSN 107
>sp|C7YM38|ACUK_NECH7 Transcription activator of gluconeogenesis NECHADRAFT_59099
OS=Nectria haematococca (strain 77-13-4 / ATCC MYA-4622
/ FGSC 9596 / MPVI) GN=NECHADRAFT_59099 PE=3 SV=1
Length = 662
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 30 QDEDQDETSSSVQSPPGVIQSK----SDSAGVVVLEIERSVDLKYCW 72
QD DQ E S + PG++ S+ S G+ +E + V+ YCW
Sbjct: 584 QDPDQKEPGSQKDAQPGILSSRVTRIDGSHGISRIEKDGKVECTYCW 630
>sp|Q7V3R5|PURL_PROMP Phosphoribosylformylglycinamidine synthase 2 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=purL
PE=3 SV=1
Length = 779
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 109 DEKQKGNAFTQVACP-QCNTKYFIVYPYRGLLVSLLDT 145
DEK K N F+ VA CN+++ ++ PYRG + ++ ++
Sbjct: 470 DEKNKNNEFSGVAASVDCNSRWVLLDPYRGSIAAVAES 507
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 61 EIERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQV 120
++E V+ CW+C ++ + PC C G VH CL+ W+ +
Sbjct: 5 DVEEGVEGPICWIC----REEVGNEGIHPCACTGELDVVHPQCLSTWLTVSR------NT 54
Query: 121 ACPQCNTKY 129
AC C Y
Sbjct: 55 ACQMCRVIY 63
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 35 DETSSSVQSPPGVIQSKSDSAGVVVLEIERSV-------DLKYCWVCFATHEDDRNALWV 87
++ SS V P + S G ++ + R++ D C +C HE +
Sbjct: 27 EDCSSLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSSFNDHPMCRIC---HEGSTQEDLL 83
Query: 88 QPCLCRGTSKWVHQACLNRWIDEKQ 112
PC C GT +H++CL W+
Sbjct: 84 SPCECTGTLGTIHRSCLEHWLSSSN 108
>sp|A2BTV9|PURL_PROM5 Phosphoribosylformylglycinamidine synthase 2 OS=Prochlorococcus
marinus (strain MIT 9515) GN=purL PE=3 SV=1
Length = 779
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 106 RWIDEKQKGNAFTQVACP-QCNTKYFIVYPYRGLLVSLLDT 145
R DE+ K N F+ VA CN+++ ++ PYRG + ++ ++
Sbjct: 467 RAQDERNKNNNFSGVAASVDCNSRWVLLDPYRGSIAAVAES 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,719,594
Number of Sequences: 539616
Number of extensions: 2413696
Number of successful extensions: 5583
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 5516
Number of HSP's gapped (non-prelim): 101
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)