Query psy3895
Match_columns 185
No_of_seqs 174 out of 821
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:07:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 8E-20 2.7E-24 124.2 4.3 57 65-131 3-59 (60)
2 2d8s_A Cellular modulator of i 99.7 1.9E-17 6.6E-22 118.3 5.2 61 65-133 12-72 (80)
3 2kiz_A E3 ubiquitin-protein li 98.4 2.2E-07 7.6E-12 62.4 4.2 58 64-135 10-67 (69)
4 2ecm_A Ring finger and CHY zin 98.3 3.5E-07 1.2E-11 58.6 3.1 51 66-129 3-53 (55)
5 2l0b_A E3 ubiquitin-protein li 98.3 2.4E-07 8.4E-12 66.1 2.3 52 65-130 37-88 (91)
6 2ecl_A Ring-box protein 2; RNF 98.3 4.4E-07 1.5E-11 63.6 3.6 54 67-132 14-77 (81)
7 1iym_A EL5; ring-H2 finger, ub 98.3 2.2E-07 7.6E-12 59.6 1.6 53 66-131 3-55 (55)
8 2ep4_A Ring finger protein 24; 98.2 1.2E-06 4.1E-11 59.5 4.5 53 65-131 12-64 (74)
9 1x4j_A Ring finger protein 38; 98.2 6.8E-07 2.3E-11 61.1 2.9 53 65-131 20-72 (75)
10 1v87_A Deltex protein 2; ring- 98.2 2.8E-06 9.5E-11 62.3 5.8 59 66-132 23-95 (114)
11 2ect_A Ring finger protein 126 98.1 8.6E-07 2.9E-11 60.8 2.2 55 64-132 11-65 (78)
12 2ct2_A Tripartite motif protei 98.1 2.7E-06 9.1E-11 59.2 4.5 58 65-132 12-69 (88)
13 2csy_A Zinc finger protein 183 98.0 5.9E-06 2E-10 57.2 4.7 50 64-130 11-60 (81)
14 2ysl_A Tripartite motif-contai 98.0 3.8E-06 1.3E-10 56.6 2.8 53 65-131 17-69 (73)
15 2ea6_A Ring finger protein 4; 97.9 4.1E-06 1.4E-10 55.5 2.4 53 65-130 12-67 (69)
16 3dpl_R Ring-box protein 1; ubi 97.9 9.4E-06 3.2E-10 60.2 4.1 54 66-132 35-102 (106)
17 1chc_A Equine herpes virus-1 r 97.8 1.1E-05 3.8E-10 53.6 3.4 50 66-131 3-52 (68)
18 2djb_A Polycomb group ring fin 97.8 1.3E-05 4.6E-10 54.2 3.7 52 64-132 11-63 (72)
19 2xeu_A Ring finger protein 4; 97.8 1.1E-05 3.8E-10 52.6 3.1 52 67-131 2-56 (64)
20 2ysj_A Tripartite motif-contai 97.8 2.5E-05 8.6E-10 51.3 4.8 48 64-125 16-63 (63)
21 3ng2_A RNF4, snurf, ring finge 97.8 8.4E-06 2.9E-10 54.5 2.5 54 65-131 7-63 (71)
22 2yur_A Retinoblastoma-binding 97.8 1.3E-05 4.3E-10 54.8 3.4 52 64-130 11-63 (74)
23 2ecw_A Tripartite motif-contai 97.8 2.7E-05 9.1E-10 53.3 5.0 56 65-131 16-71 (85)
24 2d8t_A Dactylidin, ring finger 97.8 6.8E-06 2.3E-10 55.5 1.9 50 65-131 12-61 (71)
25 2ct0_A Non-SMC element 1 homol 97.7 1.7E-05 5.9E-10 55.5 3.3 57 65-136 12-69 (74)
26 2ecv_A Tripartite motif-contai 97.7 3.8E-05 1.3E-09 52.5 4.2 57 65-132 16-72 (85)
27 2ecn_A Ring finger protein 141 97.7 4.2E-06 1.4E-10 56.2 -0.8 51 64-132 11-61 (70)
28 3lrq_A E3 ubiquitin-protein li 97.6 4.7E-05 1.6E-09 55.0 4.4 51 66-132 20-71 (100)
29 1e4u_A Transcriptional repress 97.6 2.7E-05 9.4E-10 54.5 2.9 56 65-132 8-63 (78)
30 3ztg_A E3 ubiquitin-protein li 97.6 6.4E-05 2.2E-09 52.8 4.8 52 65-130 10-61 (92)
31 4a0k_B E3 ubiquitin-protein li 97.6 1E-05 3.4E-10 61.3 0.6 56 66-132 46-113 (117)
32 2ecy_A TNF receptor-associated 97.6 2.5E-05 8.7E-10 51.8 2.4 51 65-131 12-62 (66)
33 2y43_A E3 ubiquitin-protein li 97.6 1.7E-05 5.9E-10 56.7 1.0 49 66-131 20-69 (99)
34 1g25_A CDK-activating kinase a 97.5 3.8E-05 1.3E-09 50.8 2.6 52 67-131 2-55 (65)
35 2ecj_A Tripartite motif-contai 97.5 5E-05 1.7E-09 48.7 2.9 47 65-125 12-58 (58)
36 1jm7_A BRCA1, breast cancer ty 97.5 6.3E-05 2.2E-09 54.4 3.0 52 67-132 20-71 (112)
37 3fl2_A E3 ubiquitin-protein li 97.4 0.00013 4.4E-09 54.2 4.3 49 67-131 51-99 (124)
38 1t1h_A Gspef-atpub14, armadill 97.4 9.6E-05 3.3E-09 50.4 2.9 51 66-132 6-56 (78)
39 4ayc_A E3 ubiquitin-protein li 97.3 7.8E-05 2.7E-09 56.7 2.5 48 68-132 53-100 (138)
40 1z6u_A NP95-like ring finger p 97.3 0.00018 6.3E-09 55.8 4.1 49 68-132 78-126 (150)
41 2egp_A Tripartite motif-contai 97.2 5.3E-05 1.8E-09 51.5 -0.1 57 65-131 9-65 (79)
42 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.00035 1.2E-08 62.2 4.8 65 65-133 305-375 (381)
43 2ckl_A Polycomb group ring fin 97.1 0.00018 6.1E-09 52.2 2.4 50 66-132 13-63 (108)
44 2ckl_B Ubiquitin ligase protei 97.1 0.00025 8.6E-09 55.1 2.9 49 67-131 53-102 (165)
45 1rmd_A RAG1; V(D)J recombinati 97.1 0.00039 1.3E-08 50.9 3.8 50 67-132 22-71 (116)
46 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00017 5.8E-09 53.0 1.5 53 66-131 5-60 (133)
47 2y1n_A E3 ubiquitin-protein li 96.9 0.00052 1.8E-08 61.5 3.7 51 66-132 330-380 (389)
48 3hct_A TNF receptor-associated 96.9 0.0007 2.4E-08 49.9 3.7 52 65-132 15-66 (118)
49 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00035 1.2E-08 51.3 1.8 56 65-131 69-125 (133)
50 1wim_A KIAA0161 protein; ring 96.6 0.0013 4.6E-08 46.5 3.3 58 67-132 4-65 (94)
51 3l11_A E3 ubiquitin-protein li 96.6 0.00025 8.6E-09 51.9 -0.8 50 66-131 13-62 (115)
52 1jm7_B BARD1, BRCA1-associated 96.4 0.0009 3.1E-08 49.2 1.2 48 66-132 20-68 (117)
53 2kr4_A Ubiquitin conjugation f 95.9 0.0099 3.4E-07 41.6 4.7 50 66-132 12-61 (85)
54 1bor_A Transcription factor PM 95.9 0.0018 6E-08 41.8 0.5 48 65-132 3-50 (56)
55 2vje_A E3 ubiquitin-protein li 95.7 0.0041 1.4E-07 41.3 1.7 50 66-132 6-58 (64)
56 2yu4_A E3 SUMO-protein ligase 95.6 0.02 7E-07 40.6 5.5 52 66-128 5-59 (94)
57 3knv_A TNF receptor-associated 95.6 0.0013 4.4E-08 50.5 -1.0 50 65-130 28-77 (141)
58 2vje_B MDM4 protein; proto-onc 95.6 0.0045 1.6E-07 41.0 1.8 50 65-131 4-56 (63)
59 4ic3_A E3 ubiquitin-protein li 95.6 0.0032 1.1E-07 42.8 0.9 46 66-132 22-68 (74)
60 3hcs_A TNF receptor-associated 95.5 0.0096 3.3E-07 46.2 3.7 52 65-132 15-66 (170)
61 1wgm_A Ubiquitin conjugation f 95.5 0.013 4.6E-07 42.2 4.0 51 66-132 20-70 (98)
62 2kre_A Ubiquitin conjugation f 95.4 0.0099 3.4E-07 43.0 3.2 49 66-131 27-75 (100)
63 1weo_A Cellulose synthase, cat 95.3 0.021 7.3E-07 41.4 4.6 55 66-130 14-69 (93)
64 2c2l_A CHIP, carboxy terminus 95.2 0.016 5.4E-07 47.3 4.1 51 66-132 206-256 (281)
65 3nw0_A Non-structural maintena 95.1 0.012 4.1E-07 49.1 3.2 56 65-135 177-233 (238)
66 2ea5_A Cell growth regulator w 94.2 0.037 1.3E-06 37.1 3.3 47 65-132 12-59 (68)
67 2ecg_A Baculoviral IAP repeat- 93.5 0.033 1.1E-06 37.6 2.0 45 67-132 24-69 (75)
68 2f42_A STIP1 homology and U-bo 92.5 0.097 3.3E-06 42.0 3.7 51 66-132 104-154 (179)
69 3t6p_A Baculoviral IAP repeat- 91.4 0.036 1.2E-06 48.6 -0.0 46 66-132 293-339 (345)
70 1wil_A KIAA1045 protein; ring 90.1 0.16 5.6E-06 36.4 2.5 56 66-129 13-77 (89)
71 3htk_C E3 SUMO-protein ligase 88.3 0.58 2E-05 39.9 5.0 54 64-132 177-233 (267)
72 2yho_A E3 ubiquitin-protein li 86.8 0.16 5.5E-06 34.9 0.6 45 67-132 17-62 (79)
73 2ku3_A Bromodomain-containing 84.9 0.6 2E-05 31.8 2.7 53 65-127 13-65 (71)
74 2l43_A N-teminal domain from h 84.8 0.29 9.8E-06 34.7 1.1 54 66-129 23-76 (88)
75 1wen_A Inhibitor of growth fam 82.4 0.89 3E-05 30.9 2.7 52 64-129 12-66 (71)
76 2bay_A PRE-mRNA splicing facto 81.6 1.1 3.8E-05 29.2 2.9 46 69-131 4-50 (61)
77 2lbm_A Transcriptional regulat 80.6 0.99 3.4E-05 34.9 2.7 55 63-127 58-116 (142)
78 2vpb_A Hpygo1, pygopus homolog 79.5 0.83 2.8E-05 30.6 1.7 34 65-104 5-40 (65)
79 2jmi_A Protein YNG1, ING1 homo 78.3 0.43 1.5E-05 34.2 0.0 52 63-127 21-75 (90)
80 2lri_C Autoimmune regulator; Z 77.1 0.62 2.1E-05 31.3 0.5 50 67-129 11-60 (66)
81 2g6q_A Inhibitor of growth pro 72.0 0.73 2.5E-05 30.5 -0.1 51 64-127 7-59 (62)
82 2yt5_A Metal-response element- 68.9 1.5 5.3E-05 28.6 0.9 60 64-128 2-61 (66)
83 1wee_A PHD finger family prote 67.5 1.4 4.9E-05 29.5 0.6 64 56-129 4-67 (72)
84 2vnf_A ING 4, P29ING4, inhibit 65.0 1.1 3.7E-05 29.4 -0.5 50 65-127 7-58 (60)
85 1wep_A PHF8; structural genomi 64.9 5.1 0.00017 27.2 3.0 58 64-130 8-65 (79)
86 1weu_A Inhibitor of growth fam 64.7 14 0.00048 26.2 5.4 53 64-129 32-86 (91)
87 2kgg_A Histone demethylase jar 63.9 1.4 4.8E-05 27.8 -0.1 47 70-126 4-52 (52)
88 3c6w_A P28ING5, inhibitor of g 63.0 1.2 4.3E-05 29.0 -0.4 49 65-127 6-57 (59)
89 1wew_A DNA-binding family prot 62.6 6.4 0.00022 26.7 3.2 54 65-128 13-72 (78)
90 2ri7_A Nucleosome-remodeling f 61.4 1.6 5.6E-05 33.6 -0.1 56 65-129 5-60 (174)
91 4gne_A Histone-lysine N-methyl 61.3 3.1 0.0001 30.5 1.4 31 65-105 12-45 (107)
92 3u5n_A E3 ubiquitin-protein li 61.3 0.85 2.9E-05 36.6 -1.8 53 64-129 3-55 (207)
93 2l5u_A Chromodomain-helicase-D 60.2 1.9 6.5E-05 28.1 0.1 52 64-128 7-58 (61)
94 2rsd_A E3 SUMO-protein ligase 60.0 0.35 1.2E-05 32.4 -3.7 54 66-127 8-64 (68)
95 3o36_A Transcription intermedi 59.6 0.88 3E-05 35.7 -2.0 50 67-129 3-52 (184)
96 2k16_A Transcription initiatio 58.1 6.3 0.00022 26.2 2.5 57 64-130 14-70 (75)
97 1f62_A Transcription factor WS 55.5 7.1 0.00024 24.0 2.2 48 70-127 2-49 (51)
98 3lqh_A Histone-lysine N-methyl 54.5 5.1 0.00017 31.9 1.7 59 68-130 2-65 (183)
99 2lv9_A Histone-lysine N-methyl 50.5 9.1 0.00031 27.1 2.4 51 66-128 26-76 (98)
100 2xb1_A Pygopus homolog 2, B-ce 48.2 6.3 0.00021 28.5 1.2 59 68-131 3-64 (105)
101 1mm2_A MI2-beta; PHD, zinc fin 46.6 1.5 5.1E-05 28.7 -2.2 52 64-128 5-56 (61)
102 2e6r_A Jumonji/ARID domain-con 45.1 4.7 0.00016 28.4 0.1 53 65-128 13-66 (92)
103 3ql9_A Transcriptional regulat 44.2 24 0.00082 26.6 4.0 54 63-127 52-110 (129)
104 1we9_A PHD finger family prote 43.3 8.7 0.0003 24.7 1.2 55 65-128 3-58 (64)
105 3v43_A Histone acetyltransfera 37.9 18 0.00062 25.9 2.4 36 67-106 4-43 (112)
106 1wev_A Riken cDNA 1110020M19; 37.2 5.2 0.00018 27.9 -0.7 60 67-131 15-75 (88)
107 2kvh_A Zinc finger and BTB dom 36.1 13 0.00044 18.2 0.9 14 118-131 2-15 (27)
108 3rsn_A SET1/ASH2 histone methy 35.3 14 0.00047 29.5 1.4 51 73-127 7-58 (177)
109 2ysm_A Myeloid/lymphoid or mix 35.1 5.7 0.0002 28.4 -0.8 37 65-108 4-41 (111)
110 1ard_A Yeast transcription fac 34.6 15 0.00052 17.9 1.1 13 119-131 2-14 (29)
111 1p7a_A BF3, BKLF, kruppel-like 32.8 18 0.00061 19.1 1.3 15 117-131 9-23 (37)
112 2kvf_A Zinc finger and BTB dom 32.8 16 0.00053 17.9 0.9 14 118-131 2-15 (28)
113 2m0e_A Zinc finger and BTB dom 32.6 18 0.0006 17.5 1.1 13 119-131 2-14 (29)
114 1wem_A Death associated transc 32.5 34 0.0012 22.6 2.9 57 66-129 14-71 (76)
115 2kvg_A Zinc finger and BTB dom 32.3 14 0.00046 18.3 0.6 13 119-131 3-15 (27)
116 2ko5_A Ring finger protein Z; 31.7 12 0.00042 27.1 0.5 48 67-132 27-74 (99)
117 2lvu_A Zinc finger and BTB dom 37.6 10 0.00034 18.4 0.0 13 119-131 2-14 (26)
118 1rik_A E6APC1 peptide; E6-bind 31.3 16 0.00054 17.9 0.8 13 119-131 2-14 (29)
119 2elx_A Zinc finger protein 406 31.3 18 0.00062 18.6 1.1 15 117-131 5-19 (35)
120 1klr_A Zinc finger Y-chromosom 31.0 18 0.00062 17.6 1.0 13 119-131 2-14 (30)
121 2elr_A Zinc finger protein 406 30.6 24 0.00081 18.3 1.5 15 117-131 7-21 (36)
122 2m0f_A Zinc finger and BTB dom 30.5 16 0.00056 17.7 0.8 13 119-131 2-14 (29)
123 2ro1_A Transcription intermedi 30.1 15 0.00052 28.9 0.9 50 68-130 2-51 (189)
124 2elt_A Zinc finger protein 406 30.1 21 0.00073 18.5 1.3 15 117-131 7-21 (36)
125 1paa_A Yeast transcription fac 30.0 20 0.00069 17.6 1.1 13 119-131 2-14 (30)
126 1srk_A Zinc finger protein ZFP 28.9 20 0.00069 18.6 1.0 15 117-131 5-19 (35)
127 3i2d_A E3 SUMO-protein ligase 28.5 8.8 0.0003 34.0 -0.9 44 83-132 256-301 (371)
128 4fo9_A E3 SUMO-protein ligase 28.0 20 0.00067 31.6 1.3 43 84-132 223-267 (360)
129 2elq_A Zinc finger protein 406 27.6 23 0.00078 18.5 1.1 15 117-131 7-21 (36)
130 2elp_A Zinc finger protein 406 27.2 24 0.00083 18.6 1.2 15 117-131 7-21 (37)
131 2elv_A Zinc finger protein 406 27.1 23 0.00079 18.5 1.1 15 117-131 7-21 (36)
132 2m0d_A Zinc finger and BTB dom 27.0 22 0.00075 17.2 0.9 14 118-131 2-15 (30)
133 2els_A Zinc finger protein 406 26.9 23 0.0008 18.5 1.1 15 117-131 7-21 (36)
134 2yql_A PHD finger protein 21A; 26.8 16 0.00056 22.9 0.4 51 64-127 5-55 (56)
135 2elo_A Zinc finger protein 406 26.2 22 0.00076 18.7 0.9 15 117-131 7-21 (37)
136 2elm_A Zinc finger protein 406 25.7 23 0.0008 18.9 0.9 15 117-131 7-21 (37)
137 1znf_A 31ST zinc finger from X 25.3 23 0.00077 17.0 0.7 12 120-131 2-13 (27)
138 2lvt_A Zinc finger and BTB dom 31.2 15 0.00051 18.1 0.0 13 119-131 2-14 (29)
139 3vk6_A E3 ubiquitin-protein li 24.7 58 0.002 23.6 3.1 33 87-131 17-49 (101)
140 2yte_A Zinc finger protein 473 24.3 32 0.0011 18.5 1.4 15 117-131 8-22 (42)
141 1rim_A E6APC2 peptide; E6-bind 24.3 27 0.00094 18.2 1.0 13 119-131 2-14 (33)
142 2lvr_A Zinc finger and BTB dom 30.0 16 0.00055 17.9 0.0 13 119-131 3-15 (30)
143 2kfq_A FP1; protein, de novo p 24.1 26 0.00088 18.1 0.9 13 119-131 2-14 (32)
144 2jvx_A NF-kappa-B essential mo 23.3 27 0.00093 19.6 0.9 12 118-129 2-13 (28)
145 1x4i_A Inhibitor of growth pro 22.9 28 0.00097 23.1 1.0 52 65-129 3-56 (70)
146 1fp0_A KAP-1 corepressor; PHD 22.6 15 0.00051 26.0 -0.4 55 64-131 21-75 (88)
147 2ytb_A Zinc finger protein 32; 22.5 36 0.0012 18.3 1.3 15 117-131 9-23 (42)
148 2eon_A ZFP-95, zinc finger pro 22.3 37 0.0013 19.0 1.4 15 117-131 10-24 (46)
149 2epv_A Zinc finger protein 268 22.2 32 0.0011 19.0 1.1 15 117-131 10-24 (44)
150 2eos_A B-cell lymphoma 6 prote 22.1 36 0.0012 18.5 1.3 15 117-131 9-23 (42)
151 1njq_A Superman protein; zinc- 21.9 31 0.0011 18.4 1.0 14 118-131 5-18 (39)
152 3kqi_A GRC5, PHD finger protei 21.7 48 0.0016 21.9 2.0 56 66-130 8-63 (75)
153 2emg_A Zinc finger protein 484 21.0 41 0.0014 18.6 1.4 15 117-131 10-24 (46)
154 2enf_A Zinc finger protein 347 20.9 42 0.0014 18.6 1.4 15 117-131 10-24 (46)
155 2enh_A Zinc finger protein 28 20.9 40 0.0014 18.7 1.3 15 117-131 10-24 (46)
156 2en7_A Zinc finger protein 268 20.8 38 0.0013 18.5 1.2 15 117-131 10-24 (44)
157 2ept_A Zinc finger protein 32; 20.6 36 0.0012 18.3 1.1 15 117-131 8-22 (41)
158 2epc_A Zinc finger protein 32; 20.5 35 0.0012 18.4 1.0 15 117-131 9-23 (42)
159 2el5_A Zinc finger protein 268 20.2 37 0.0013 18.3 1.0 15 117-131 8-22 (42)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.78 E-value=8e-20 Score=124.23 Aligned_cols=57 Identities=28% Similarity=0.736 Sum_probs=50.0
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
++++..||||+++. +++|+.||+|+||++|||+.||.+|+..+ +...||+|+++|.+
T Consensus 3 ~~~~~~CrIC~~~~----~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~------~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTIS------RNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHH------TCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC----CCceecCcCCCCchhhhHHHHHHHHHHhC------CCCccCCCCCeeec
Confidence 46788999999874 24689999999999999999999999986 35899999999986
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=118.27 Aligned_cols=61 Identities=28% Similarity=0.793 Sum_probs=52.5
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeeec
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVY 133 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~~ 133 (185)
+.++..|+||+++.++ +++|+.||+|+|++++||+.||.+|+..+ +...||+|+++|.+..
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQWIKSS------DTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHHHHhhC------CCCCCCCCCCeeecCc
Confidence 4567899999987754 45799999999999999999999999985 3579999999998763
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=2.2e-07 Score=62.38 Aligned_cols=58 Identities=22% Similarity=0.625 Sum_probs=43.3
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeeecCc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPY 135 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~~p~ 135 (185)
..++...|.||++..... ....+.||. +.+|..||.+|+... ..||+|+.++....|.
T Consensus 10 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-EDVRRLPCM-----HLFHQVCVDQWLITN--------KKCPICRVDIEAQLPS 67 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-SCEEECTTS-----CEEEHHHHHHHHHHC--------SBCTTTCSBSCSCCCC
T ss_pred cCCCCCCCeeCCccccCC-CcEEEeCCC-----CHHHHHHHHHHHHcC--------CCCcCcCccccCcCCC
Confidence 345678899999876532 345566764 779999999999863 4699999998876543
No 4
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.30 E-value=3.5e-07 Score=58.56 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=39.8
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
.+...|.||++...+......+.||. +.+|..||.+|+... ..||+|+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--------YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--------CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--------CcCCCCCCcC
Confidence 35678999999865433346677764 779999999999873 7899999876
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.29 E-value=2.4e-07 Score=66.11 Aligned_cols=52 Identities=19% Similarity=0.583 Sum_probs=39.5
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
.++...|.||++...+. ....+.||. +.+|..||.+|+.. ...||+|+.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~-~~~~~l~C~-----H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-DVATELPCH-----HYFHKPCVSIWLQK--------SGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTT-CEEEEETTT-----EEEEHHHHHHHHTT--------TCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCC-CcEEecCCC-----ChHHHHHHHHHHHc--------CCcCcCcCccCC
Confidence 45678999999887542 334556754 78999999999964 358999999875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=4.4e-07 Score=63.59 Aligned_cols=54 Identities=20% Similarity=0.631 Sum_probs=38.3
Q ss_pred CCCeeeEecccccC----------CCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHED----------DRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~----------~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+...|-||++...+ ..+...+.| .|. +.+|..||.+|+.. ...||+|++++.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~--------~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQ--------NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTT--------CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHh--------CCCCCCcCCCcchh
Confidence 45668888776643 112344554 555 88999999999975 25899999998764
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.27 E-value=2.2e-07 Score=59.60 Aligned_cols=53 Identities=28% Similarity=0.653 Sum_probs=39.1
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
++...|-||++...++ +.....| .|. +.+|..||.+|+.. ...||+|+.++.+
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~~~~-~C~---H~f~~~Ci~~w~~~--------~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-EEARFLP-RCG---HGFHAECVDMWLGS--------HSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTT-SCCEECS-SSC---CEECTTHHHHTTTT--------CCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCC-CceEECC-CCC---CcccHHHHHHHHHc--------CCcCcCCCCEeEC
Confidence 4567899999987653 3345555 344 77999999999854 3689999998753
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.2e-06 Score=59.47 Aligned_cols=53 Identities=26% Similarity=0.690 Sum_probs=39.2
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++...|.||++...+. ....+.|| . +.+|..||.+|+..+ ..||+|+.++.-
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~~~~C--~---H~f~~~Ci~~~~~~~--------~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPR-DELGICPC--K---HAFHRKCLIKWLEVR--------KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSS-SCEEEETT--T---EEEEHHHHHHHHHHC--------SBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCC-CcEEEcCC--C---CEecHHHHHHHHHcC--------CcCCCcCccccc
Confidence 44567999999987542 22233465 4 789999999999862 489999998863
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=6.8e-07 Score=61.10 Aligned_cols=53 Identities=26% Similarity=0.674 Sum_probs=39.9
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++...|.||++...+. ......||. +.+|..||.+|+..+ ..||+|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~-----H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCN-----HEFHAKCVDKWLKAN--------RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTT-----EEEETTHHHHHHHHC--------SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCC-----CHhHHHHHHHHHHcC--------CcCcCcCCcCCC
Confidence 45678999999886542 233556654 789999999999762 589999998753
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.17 E-value=2.8e-06 Score=62.25 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=40.6
Q ss_pred CCCCeeeEecccccCCC----------CC--ce--eeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDR----------NA--LW--VQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~----------~~--~l--i~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.....|-||++...+.. .. .. +.||. +.+|..||.+|+.... ......||+|++.|..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~---~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGN---KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTC---CSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHccc---CCCCCcCCCCCCccCC
Confidence 34569999998764311 00 11 45554 7899999999997532 1245799999999976
Q ss_pred e
Q psy3895 132 V 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 95 ~ 95 (114)
T 1v87_A 95 K 95 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.13 E-value=8.6e-07 Score=60.82 Aligned_cols=55 Identities=20% Similarity=0.463 Sum_probs=40.8
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
..++...|.||++...+. ....+.||. +.+|..||.+|+.. ...||+|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALG-ESVRQLPCN-----HLFHDSCIVPWLEQ--------HDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTT-SCEEECTTS-----CEEETTTTHHHHTT--------TCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCC-CCEEEeCCC-----CeecHHHHHHHHHc--------CCcCcCcCCccCCc
Confidence 345678999999887542 233445654 77999999999964 26899999998754
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2.7e-06 Score=59.16 Aligned_cols=58 Identities=17% Similarity=0.425 Sum_probs=44.1
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
..+...|.||++...+....+.+.||. +.+|..||.+|+..+ .....||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASS-----INGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHC-----SSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcC-----CCCcCCCCCCCcccch
Confidence 455688999999876532236667764 779999999999874 2468999999998753
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=5.9e-06 Score=57.15 Aligned_cols=50 Identities=14% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
+.++...|.||++... .+.+.||. +.+|..|+.+|+.. ...||+|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQ----NPVVTKCR-----HYFCESCALEHFRA--------TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCC----SEEECTTS-----CEEEHHHHHHHHHH--------CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhc----CeeEccCC-----CHhHHHHHHHHHHC--------CCcCCCcCcccc
Confidence 3455689999998864 36777765 67999999999975 368999999986
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=3.8e-06 Score=56.60 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=40.7
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++...|.||++... .+.+.||. +.+|..||.+|+... .....||+|+.++..
T Consensus 17 ~~~~~~C~IC~~~~~----~~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ----KPVTIDCG-----HNFCLKCITQIGETS-----CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS----SEEECTTC-----CEEEHHHHHHHCSSS-----CSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccC----CeEEcCCC-----ChhhHHHHHHHHHcC-----CCCCCCCCCCCcCCc
Confidence 456789999998764 35566654 779999999999732 246899999998865
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=4.1e-06 Score=55.51 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=39.1
Q ss_pred CCCCCeeeEecccccCC---CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 65 SVDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~---~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
..+...|.||++...+. .....+.||. +.+|..||.+|+.. ...||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--------ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--------CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--------CCCCCCCCCccC
Confidence 45678899999876531 1122556664 77999999999986 268999999875
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.88 E-value=9.4e-06 Score=60.18 Aligned_cols=54 Identities=20% Similarity=0.467 Sum_probs=38.3
Q ss_pred CCCCeeeEecccccCC-------------CCCc-eeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDD-------------RNAL-WVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~-------------~~~~-li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.+...|-||++..++. .+.+ ...| |. +.+|..||.+|+.. ...||+|+.+|.+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~--C~---H~FH~~Ci~~Wl~~--------~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CN---HAFHFHCISRWLKT--------RQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET--TS---CEEEHHHHHHHHTT--------CSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc--cC---cEECHHHHHHHHHc--------CCcCcCCCCccee
Confidence 3567899998875431 0112 3344 54 88999999999875 3789999999876
Q ss_pred e
Q psy3895 132 V 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 102 ~ 102 (106)
T 3dpl_R 102 Q 102 (106)
T ss_dssp E
T ss_pred e
Confidence 4
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.83 E-value=1.1e-05 Score=53.63 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=38.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
++...|.||++...+ ...+.||. +.+|..|+.+|+.. ...||+|+.++..
T Consensus 3 ~~~~~C~IC~~~~~~---~~~~~~C~-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN---YSMALPCL-----HAFCYVCITRWIRQ--------NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS---CEEETTTT-----EEESTTHHHHHHHH--------SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC---CcEecCCC-----CeeHHHHHHHHHhC--------cCcCcCCChhhHh
Confidence 456789999997643 23667764 77999999999975 2689999999864
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=54.18 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=40.1
Q ss_pred CCCCCCeeeEecccccCCCCCcee-eccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWV-QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li-~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+-++...|.||++...+ +.. .||. +.+|..||.+|+.. ...||+|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLID----ATTITECL-----HTFCKSCIVRHFYY--------SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSS----CEECSSSC-----CEECHHHHHHHHHH--------CSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHC----cCEECCCC-----CHHHHHHHHHHHHc--------CCcCCCcCcccCcc
Confidence 34556899999987643 444 4765 66999999999976 37899999998764
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=52.59 Aligned_cols=52 Identities=17% Similarity=0.390 Sum_probs=38.5
Q ss_pred CCCeeeEecccccCC---CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 67 DLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~---~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
+...|.||++...+. .....+.||. +.+|..|+.+|+.. ...||+|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--------ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--------CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--------CCCCCCCCccCCc
Confidence 467899999876431 1223556665 77999999999986 3699999998764
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=2.5e-05 Score=51.31 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=36.3
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCC
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 125 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~C 125 (185)
.-++...|.||++...+ +.+.||. +.+|..||.+|+... .....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK----PVTIDCG-----HNFCLKCITQIGETS-----CGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS----CEECTTS-----SEECHHHHHHHHHHC-----SSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC----eEEeCCC-----CcchHHHHHHHHHcC-----CCCCcCcCC
Confidence 34567899999987643 5666654 779999999999862 245789998
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.81 E-value=8.4e-06 Score=54.47 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=39.9
Q ss_pred CCCCCeeeEecccccCC---CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~---~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++...|-||++...+. .....+.||. +.+|..||.+|+..+ ..||+|+.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--------NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--------CCCCCCCCccCh
Confidence 35678899999876431 1223556665 779999999999862 589999999874
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=54.78 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=40.3
Q ss_pred CCCCCCeeeEecccccCCCCCceeec-cCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQP-CLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~P-C~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
+-.+...|.||++... .+.+.| |. +.+|..||.+|+..+ ....||+|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~----~p~~~~~Cg-----H~fC~~Ci~~~~~~~------~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMT----DAVVIPCCG-----NSYCDECIRTALLES------DEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCT----TCEECSSSC-----CEECTTHHHHHHHHS------SSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHh----CCeEcCCCC-----CHHHHHHHHHHHHhc------CCCcCCCCCCcCC
Confidence 3455689999998764 366776 54 779999999999873 3579999999754
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.80 E-value=2.7e-05 Score=53.31 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=42.2
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
-++...|.||++...+ +.+.||. +.+|..||.+|+..... ......||+|+.++..
T Consensus 16 ~~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE----PVSADCN-----HSFCRACITLNYESNRN--TDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSS----CEECTTS-----CCBCHHHHHHHHHHSBC--TTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCc----ceeCCCC-----CHHHHHHHHHHHHhccC--CCCCCCCCCCCCcCCH
Confidence 3456799999987643 5667754 67999999999987431 1246899999999874
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=6.8e-06 Score=55.54 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
..+...|.||++... ++...||. +.+|..||.+|+.. ...||+|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~----~~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCV----HPVSLPCK-----HVFCYLCVKGASWL--------GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCS----SEEEETTT-----EEEEHHHHHHCTTC--------SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccC----CCEEccCC-----CHHHHHHHHHHHHC--------CCcCcCcCchhCH
Confidence 456688999998763 35666754 77999999999964 3799999999864
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=1.7e-05 Score=55.52 Aligned_cols=57 Identities=21% Similarity=0.580 Sum_probs=42.5
Q ss_pred CCCCCeeeEecccccCCCCCceeecc-CCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeeecCcc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPC-LCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPYR 136 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC-~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~~p~~ 136 (185)
.+....|-||++..... . -| .|. +-+|..||.+|++.+ ...+||+|++++....+..
T Consensus 12 ~~~i~~C~IC~~~i~~g---~---~C~~C~---h~fH~~Ci~kWl~~~------~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG---Q---SCETCG---IRMHLPCVAKYFQSN------AEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSSSCBCSSSCCBCSSS---E---ECSSSC---CEECHHHHHHHSTTC------SSCCCTTTCSCCCSCCCCC
T ss_pred cCCCCcCcchhhHcccC---C---ccCCCC---chhhHHHHHHHHHhc------CCCCCCCCcCcCCCCCCCC
Confidence 45668999999987532 1 23 565 779999999999753 3479999999998765543
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.8e-05 Score=52.54 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
-.+...|.||++...+ +.+.||. +.+|..||.+|+...... .....||+|+.++...
T Consensus 16 ~~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~~~~--~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ----PLSLDCG-----HSFCQACLTANHKKSMLD--KGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS----CBCCSSS-----CCBCTTHHHHHHHHHHHT--TSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC----ceeCCCC-----CHHHHHHHHHHHHHhhcC--CCCCcCCCCCCccCHH
Confidence 3456889999998643 4555654 669999999999874321 2368999999998753
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=4.2e-06 Score=56.17 Aligned_cols=51 Identities=25% Similarity=0.690 Sum_probs=39.8
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
...+...|.||++...+ .+.||. +.+|..|+.+|+.. ...||+|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-----LILPCA-----HSFCQKCIDKWSDR--------HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-----EEETTT-----EEECHHHHHHSSCC--------CSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC-----cccCCC-----CcccHHHHHHHHHC--------cCcCCCcCCcccCC
Confidence 44567899999997632 667764 77999999999862 57899999987643
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.64 E-value=4.7e-05 Score=54.96 Aligned_cols=51 Identities=24% Similarity=0.745 Sum_probs=40.5
Q ss_pred CCCCeeeEecccccCCCCCcee-eccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWV-QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li-~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
++...|.||++...+ +.. .||. +.+|..||.+|+..+ ...||+|+.++...
T Consensus 20 ~~~~~C~IC~~~~~~----p~~~~~Cg-----H~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD----ARLCPHCS-----KLCCFSCIRRWLTEQ-------RAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSS----EEECTTTC-----CEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccC----ccccCCCC-----ChhhHHHHHHHHHHC-------cCCCCCCCCcCCHH
Confidence 346789999998743 555 6765 679999999999873 27999999999754
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.63 E-value=2.7e-05 Score=54.52 Aligned_cols=56 Identities=23% Similarity=0.469 Sum_probs=43.7
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+++..|.||++.-+. ..+.+.||.|. +.+++.||.+|... ....||+|+.+|...
T Consensus 8 ~~~~~~CpICle~~~~--~d~~~~p~~CG---H~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI--DDINFFPCTCG---YQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCT--TTTTCCSSTTS---CCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCcc--ccccccccCCC---CCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 3566889999996643 34577899997 77999999988643 357999999999753
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.62 E-value=6.4e-05 Score=52.84 Aligned_cols=52 Identities=23% Similarity=0.530 Sum_probs=40.4
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
-.+...|.||++... .|.+.|| |. +.++..||.+|+... ....||+|+.++.
T Consensus 10 ~~~~~~C~IC~~~~~----~p~~~~~-Cg---H~fC~~Ci~~~~~~~------~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMT----DAVVIPC-CG---NSYCDECIRTALLES------DEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECS----SCEECTT-TC---CEECHHHHHHHHHHC------TTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhc----CceECCC-CC---CHHHHHHHHHHHHhc------CCCcCcCCCCcCC
Confidence 456789999998764 3677772 43 779999999999863 3479999999983
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.62 E-value=1e-05 Score=61.33 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=1.4
Q ss_pred CCCCeeeEecccccCC------------CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDD------------RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~------------~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+...|-||++..++. .+.-.+....|. +.+|..||.+|+..+ ..||+|+.+|.+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~---H~FH~~CI~~Wl~~~--------~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN---HAFHFHCISRWLKTR--------QVCPLDNREWEFQ 113 (117)
T ss_dssp CCC----------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcC---ceEcHHHHHHHHHcC--------CcCCCCCCeeeee
Confidence 3457899999876431 011122222454 889999999999863 6899999998753
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=2.5e-05 Score=51.84 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
-++...|.||++...+ +...||. +.+|..||.+|+.. ....||+|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS----PKQTECG-----HRFCESCMAALLSS-------SSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS----CCCCSSS-----CCCCHHHHHHHHTT-------SSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC----eeECCCC-----CHHHHHHHHHHHHh-------CcCCCCCCCcCCCh
Confidence 3456889999987643 4455654 66999999999962 35789999998764
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.56 E-value=1.7e-05 Score=56.75 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=38.2
Q ss_pred CCCCeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
++...|.||++...+ +... ||. +.+|..|+.+|+.. ...||+|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNI----AMIIPQCS-----HNYCSLCIRKFLSY--------KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSS----EEECTTTC-----CEEEHHHHHHHHTT--------CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCC----cCEECCCC-----CHhhHHHHHHHHHC--------CCCCCCCCCcCCh
Confidence 345789999987643 4444 555 67999999999974 3689999999885
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.55 E-value=3.8e-05 Score=50.81 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=37.6
Q ss_pred CCCeeeEecc-cccCCCCCc-eeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 67 DLKYCWVCFA-THEDDRNAL-WVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 67 ~~~~CrIC~~-~~~~~~~~~-li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
++..|.||++ ...+ +... .+.||. +.+|..||.+|+.. +...||+|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~-~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRN-PSLKLMVNVCG-----HTLCESCVDLLFVR-------GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHC-SSCCEEECTTC-----CCEEHHHHHHHHHT-------TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCC-CccCeecCCCC-----CHhHHHHHHHHHHc-------CCCcCCCCCCcccc
Confidence 4578999999 4433 1222 456765 66999999999874 24789999999864
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=5e-05 Score=48.66 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=35.2
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCC
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 125 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~C 125 (185)
.++...|.||++...+ +.+.||. +.+|..||.+|+... .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE----PVIIECG-----HNFCKACITRWWEDL-----ERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS----CCCCSSC-----CCCCHHHHHHHTTSS-----CCSCCCSCC
T ss_pred cccCCCCccCCcccCc----cEeCCCC-----CccCHHHHHHHHHhc-----CCCCCCCCC
Confidence 3456899999998753 4556654 669999999998642 246889998
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.46 E-value=6.3e-05 Score=54.42 Aligned_cols=52 Identities=15% Similarity=0.392 Sum_probs=39.6
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+...|.||++...+ +.+.||. +.+|..||.+|+..+ .....||+|+.++...
T Consensus 20 ~~~~C~IC~~~~~~----p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKE----PVSTKCD-----HIFCKFCMLKLLNQK-----KGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSS----CCBCTTS-----CCCCSHHHHHHHHSS-----SSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcC----eEECCCC-----CHHHHHHHHHHHHhC-----CCCCCCcCCCCcCCHh
Confidence 35689999987643 5556654 679999999999863 2347999999998753
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.41 E-value=0.00013 Score=54.22 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=39.1
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
+...|.||++... .+...||. +.+|..||.+|+.. +...||+|+.++..
T Consensus 51 ~~~~C~IC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF----RPITTVCQ-----HNVCKDCLDRSFRA-------QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS----SEEECTTS-----CEEEHHHHHHHHHT-------TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc----CcEEeeCC-----CcccHHHHHHHHhH-------CcCCCCCCCccCCC
Confidence 4578999998764 36666764 66999999999984 34699999999975
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.37 E-value=9.6e-05 Score=50.36 Aligned_cols=51 Identities=10% Similarity=0.303 Sum_probs=40.3
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+.-.|.||++... .|.+.||. +.++..||.+|+.. +...||+|+.++...
T Consensus 6 ~~~~~C~IC~~~~~----~Pv~~~Cg-----H~fc~~Ci~~~~~~-------~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMK----DPVIVSTG-----QTYERSSIQKWLDA-------GHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCS----SEEEETTT-----EEEEHHHHHHHHTT-------TCCBCTTTCCBCSSC
T ss_pred cccCCCCCcccccc----CCEEcCCC-----CeecHHHHHHHHHH-------CcCCCCCCcCCCChh
Confidence 45689999998764 36777754 77999999999964 257899999998753
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.35 E-value=7.8e-05 Score=56.69 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=37.8
Q ss_pred CCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 68 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 68 ~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
...|.||++... .+.+.||. +.+|..||.+|+.. ...||+|+.++...
T Consensus 53 ~~~C~iC~~~~~----~~~~~~Cg-----H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLNCA-----HSFCSYCINEWMKR--------KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS----SEEEETTS-----CEEEHHHHHHHTTT--------CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC----CceECCCC-----CCccHHHHHHHHHc--------CCcCCCCCCcCCCC
Confidence 457999998764 36677764 77999999999864 36799999998643
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00018 Score=55.83 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=39.2
Q ss_pred CCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 68 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 68 ~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
...|.||++... .+.+.||. +.++..||.+|+.. ....||+|+.++...
T Consensus 78 ~~~C~IC~~~~~----~pv~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECF-----HNVCKDCLQRSFKA-------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTS-----CEEEHHHHHHHHHT-------TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc----CCEEcCCC-----CchhHHHHHHHHHh-------CCCcCCCCCccCCCC
Confidence 468999998764 36677765 66999999999985 246899999999864
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.18 E-value=5.3e-05 Score=51.49 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=41.6
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
-++...|.||++...+ +.+.||. +.+|..||.+|+..... .......||+|+.++..
T Consensus 9 ~~~~~~C~IC~~~~~~----p~~l~Cg-----H~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE----PLSLDCG-----HSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS----CCCCSSS-----CCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC----eeECCCC-----CHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCH
Confidence 3457899999988643 4555654 67999999999976321 11246899999999875
No 42
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.16 E-value=0.00035 Score=62.21 Aligned_cols=65 Identities=25% Similarity=0.570 Sum_probs=45.2
Q ss_pred CCCCCeeeEecccccCCCCCceeecc---CCCCCCccccHHHHHHHHHHhccCCC---CCCccccCCCcceeeec
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPC---LCRGTSKWVHQACLNRWIDEKQKGNA---FTQVACPQCNTKYFIVY 133 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC---~C~GS~k~VH~~CL~~Wi~~~~~~~~---~~~~~Ce~Ck~~y~i~~ 133 (185)
++....|-||++...+++.-| ...| +|. +.+|..||.+|+.....++. .-.-.||.|+.++...+
T Consensus 305 ee~~~ECaICys~~l~~g~lP-dk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVP-LVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCC-CBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCc-cccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 456789999999876522222 2346 476 88999999999998653211 22368999999887543
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.14 E-value=0.00018 Score=52.22 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=39.3
Q ss_pred CCCCeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+...|.||++...+ +... ||. +.+|..||.+|+.. ...||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID----ATTIIECL-----HSFCKTCIVRYLET--------SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS----EEEETTTC-----CEEEHHHHHHHHTS--------CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC----cCEeCCCC-----ChhhHHHHHHHHHh--------CCcCcCCCcccccc
Confidence 456789999987643 5554 765 66999999999975 37899999998754
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.09 E-value=0.00025 Score=55.13 Aligned_cols=49 Identities=18% Similarity=0.476 Sum_probs=37.8
Q ss_pred CCCeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
+...|.||++...+ +... ||. +.+|..||.+|+.. ....||+|+.++..
T Consensus 53 ~~~~C~IC~~~~~~----p~~~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN----TMTTKECL-----HRFCADCIITALRS-------GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS----EEEETTTC-----CEEEHHHHHHHHHT-------TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC----cCEeCCCC-----ChhHHHHHHHHHHh-------CcCCCCCCCCcCCC
Confidence 45689999987643 4444 554 77999999999984 25789999999853
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.08 E-value=0.00039 Score=50.90 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=39.3
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+...|.||++... .+...||. +.+|..||.+|+... ...||+|+.++...
T Consensus 22 ~~~~C~IC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA----DPVETSCK-----HLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc----CcEEcCCC-----CcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 3578999998764 35666654 779999999999873 36899999998754
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.04 E-value=0.00017 Score=52.99 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=38.7
Q ss_pred CCCCeeeEecccccCC---CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDD---RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~---~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.+...|-||++...+. .....+.||. +.+|..||.+|+..+ ..||+|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--------NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--------SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--------CCCCCCCCcCcc
Confidence 4567899999876431 1223566665 779999999999752 589999988864
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.91 E-value=0.00052 Score=61.52 Aligned_cols=51 Identities=20% Similarity=0.609 Sum_probs=40.3
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.....|.||++... .+.+.||. +.+|..|+.+|+.. ....||+|+.++...
T Consensus 330 ~~~~~C~ICle~~~----~pv~lpCG-----H~FC~~Ci~~wl~~-------~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDK----DVKIEPCG-----HLMCTSCLTSWQES-------EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBC----CEEEETTC-----CEECHHHHHHHHHH-------TCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCC----CeEEeCCC-----ChhhHHHHHHHHhc-------CCCCCCCCCCccCCc
Confidence 34579999998763 46778886 55899999999985 247899999998754
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.89 E-value=0.0007 Score=49.92 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=40.1
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
-++...|.||++... .+...|| . +.++..||.+|+... ...||+|+.++...
T Consensus 15 ~~~~~~C~IC~~~~~----~p~~~~C--g---H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALR----EAVQTPC--G---HRFCKACIIKSIRDA-------GHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCS----SEEECTT--S---CEEEHHHHHHHHHHH-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhc----CeEECCc--C---ChhhHHHHHHHHhhC-------CCCCCCCCCCcCHH
Confidence 345679999998764 3566665 4 779999999999875 24899999998753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.85 E-value=0.00035 Score=51.29 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=39.2
Q ss_pred CCCCCeeeEecccccCC-CCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDD-RNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~-~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++...|-||++...+. .......-..|. +.+|..|+.+|+.. ...||+|+..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg---H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG---HVFCSQCLRDSLKN--------ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS---BEEEHHHHHHHHHH--------CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC---ChhhHHHHHHHHHc--------CCCCCCCCCcCCh
Confidence 45678899999876431 011222233454 88999999999986 2699999998864
No 50
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.62 E-value=0.0013 Score=46.47 Aligned_cols=58 Identities=17% Similarity=0.384 Sum_probs=41.6
Q ss_pred CCCeeeEecccccCCCCCcee--eccCCCCCCccccHHHHHHHHHHhccCCCCCCccccC--CCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWV--QPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li--~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~--Ck~~y~i~ 132 (185)
+...|.||++.... ..++ .||. +.+-.+||.+++..+...+......||. |+..+.+.
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 4 GSSGCKLCLGEYPV---EQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp SBCCCSSSCCCCBG---GGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC
T ss_pred CCcCCcccCccccc---ccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC
Confidence 45689999987643 2344 3665 6699999999999875422234689999 99986543
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.58 E-value=0.00025 Score=51.87 Aligned_cols=50 Identities=16% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.+...|.||++... .+.+.||. +.+|..||.+|+.. ....||+|+..+..
T Consensus 13 ~~~~~C~iC~~~~~----~p~~~~Cg-----H~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV----EPVTLPCN-----HTLCKPCFQSTVEK-------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS----SCEECTTS-----CEECHHHHCCCCCT-------TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC----ceeEcCCC-----CHHhHHHHHHHHhH-------CcCCCCCCCcccCc
Confidence 34578999998764 35666765 67999999999964 24799999999864
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.39 E-value=0.0009 Score=49.24 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=37.4
Q ss_pred CCCCeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+...|.||++...+ |.+. ||. +.++..||.+|+. ..||+|+.++...
T Consensus 20 ~~~~~C~IC~~~~~~----pv~~~~Cg-----H~fC~~Ci~~~~~----------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE----PVCLGGCE-----HIFCSNCVSDCIG----------TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSS----CBCCCSSS-----CCBCTTTGGGGTT----------TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhC----ccEeCCCC-----CHHHHHHHHHHhc----------CCCcCCCCcCccc
Confidence 356899999987643 5555 665 6799999999974 6799999998653
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.92 E-value=0.0099 Score=41.58 Aligned_cols=50 Identities=8% Similarity=-0.184 Sum_probs=40.5
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+.-.|-||++--. .|.+.||. +.+-+.|+.+|+.. ..+||+|+.++...
T Consensus 12 p~~~~CpI~~~~m~----dPV~~~cG-----htf~r~~I~~~l~~--------~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT----DPVRLPSG-----TVMDRSIILRHLLN--------SPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHHHH--------CSBCTTTCCBCCGG
T ss_pred chheECcccCchhc----CCeECCCC-----CEECHHHHHHHHhc--------CCCCCCCcCCCChH
Confidence 45789999998764 48888853 56899999999985 26899999998754
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.87 E-value=0.0018 Score=41.83 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=36.7
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+++...|.||++...+ +.+.||. +.++..||.+| ...||+|+.++.+.
T Consensus 3 e~~~~~C~IC~~~~~~----p~~l~Cg-----H~fC~~Ci~~~-----------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC----PKLLPCL-----HTLCSGCLEAS-----------GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBC----CSCSTTS-----CCSBTTTCSSS-----------SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCC----eEEcCCC-----CcccHHHHccC-----------CCCCCcCCcEeecC
Confidence 4567889999987653 5667765 55899998662 47899999998764
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.65 E-value=0.0041 Score=41.31 Aligned_cols=50 Identities=12% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCCeeeEecccccCCCCCceee--ccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
++...|.||++...+ ..+. ||. +. +=..|+.+|... ...||+|+.++.-.
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pCg-----H~~~C~~C~~~~~~~--------~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKTG-----HLMACFTCAKKLKKR--------NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTEE-----EEEECHHHHHHHHHT--------TCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCCC----EEEECCCCC-----ChhhHHHHHHHHHHc--------CCcCCCcCcchhce
Confidence 456789999987643 4544 875 44 348999999864 36899999988643
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.02 Score=40.55 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCCCeeeEecccccCCCCCceeec-cCCCCCCccccHHHHHHHHHHhccCCCCCCccccC--CCcc
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQP-CLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTK 128 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~P-C~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~--Ck~~ 128 (185)
.+.-.|.||++-.. +|.+.| |. +.+-+.||.+|+..... ......||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~----dPV~~~~cG-----h~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK----KPVKNKVCG-----HTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS----SEEEESSSC-----CEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc----CCEEcCCCC-----CeecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 45678999998764 478886 65 66999999999987521 124589999 9876
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.64 E-value=0.0013 Score=50.55 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=38.3
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
-++.-.|.||++.-. .|...||. +.++..||.+|+.. +...||+|+.++.
T Consensus 28 l~~~~~C~IC~~~~~----~pv~~~Cg-----H~FC~~Ci~~~~~~-------~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLR----RPFQAQCG-----HRYCSFCLASILSS-------GPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHGGG-------SCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhc----CcEECCCC-----CccCHHHHHHHHhc-------CCCCCCCCCCccc
Confidence 356689999998764 35666554 67999999999964 2468999999764
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.61 E-value=0.0045 Score=40.96 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCCCCeeeEecccccCCCCCceee--ccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.+....|.||++...+ ..+- ||. +. +-..|+.+|... ...||+|+.++.-
T Consensus 4 ~~~~~~C~IC~~~~~~----~~~~~~pCg-----H~~~C~~C~~~~~~~--------~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRD----GNIIHGRTG-----HLVTCFHCARRLKKA--------GASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSC----EEEEETTEE-----EEEECHHHHHHHHHT--------TCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCC----eEEEecCCC-----CHhHHHHHHHHHHHh--------CCcCCCcCchhhc
Confidence 4556899999997543 3333 876 44 678999999864 3689999998864
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.55 E-value=0.0032 Score=42.82 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=35.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
++...|.||++... ++...||. +. +...|+.+| ..||+|+.++.-.
T Consensus 22 ~~~~~C~iC~~~~~----~~~~~pCg-----H~~~C~~C~~~~------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNI----AIVFVPCG-----HLVTCKQCAEAV------------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBC----CEEEETTC-----CBCCCHHHHTTC------------SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCC----CEEEcCCC-----ChhHHHHhhhcC------------ccCCCcCcCccCc
Confidence 34578999998753 46777875 66 999999877 6899999988643
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.54 E-value=0.0096 Score=46.16 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=40.2
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
-++.-.|.||++... .|...| |. +.+...||.+|+..+ ...||+|+.++...
T Consensus 15 ~~~~~~C~IC~~~~~----~pv~~~--Cg---H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALR----EAVQTP--CG---HRFCKACIIKSIRDA-------GHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCS----SEEECT--TS---CEEEHHHHHHHHHHH-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhc----CcEECC--CC---CHHHHHHHHHHHHhC-------CCCCCCCccCcchh
Confidence 345689999998764 356655 54 779999999999874 24999999988753
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.48 E-value=0.013 Score=42.19 Aligned_cols=51 Identities=12% Similarity=-0.058 Sum_probs=39.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.++-.|-||++--. +|.+.||- | +.+-+.||.+|+.. ..+||+|+.++...
T Consensus 20 p~~~~CpI~~~~m~----dPV~~~cG--~--htf~r~cI~~~l~~--------~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC----DPVVLPSS--R--VTVDRSTIARHLLS--------DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS----SEEECTTT--C--CEEEHHHHHHHTTT--------SCBCTTTCSBCCTT
T ss_pred cHhcCCcCcccccc----CCeECCCC--C--eEECHHHHHHHHHh--------CCCCCCCCCCCChh
Confidence 45789999998764 47888865 1 45889999999974 25899999998753
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.43 E-value=0.0099 Score=43.04 Aligned_cols=49 Identities=8% Similarity=-0.165 Sum_probs=39.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.+.-.|.||++--. +|.+.||. +.+-+.|+.+|+.. ..+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~----dPV~~~cG-----htf~r~~I~~~l~~--------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT----DPVRLPSG-----TIMDRSIILRHLLN--------SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS----SEEEETTT-----EEEEHHHHHHHTTS--------CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc----CCeECCCC-----CEEchHHHHHHHHc--------CCCCCCCCCCCCh
Confidence 45789999998764 48899853 66899999999973 3689999999875
No 63
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.32 E-value=0.021 Score=41.35 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=41.3
Q ss_pred CCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
.....|.||-+.-.-..+..+.-.|. |. --|=+.|+..=+++ ....|++||++|+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErke-------G~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERRE-------GTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHHT-------SCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHhc-------cCccccccCCccc
Confidence 35689999988754333455666676 65 55889999877765 5689999999997
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.20 E-value=0.016 Score=47.35 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=39.9
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+.-.|.||++--. .|.+.||. +.+-+.||.+|+... ...||+|+.++...
T Consensus 206 ~~~~~c~i~~~~~~----dPv~~~~g-----h~f~~~~i~~~~~~~-------~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR----EPCITPSG-----ITYDRKDIEEHLQRV-------GHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS----SEEECSSC-----CEEETTHHHHHHHHT-------CSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhc----CCeECCCC-----CEECHHHHHHHHHHC-------CCCCcCCCCCCchh
Confidence 35678999999864 48999964 568899999999873 23499999999743
No 65
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=49.09 Aligned_cols=56 Identities=23% Similarity=0.585 Sum_probs=41.8
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeeecCc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIVYPY 135 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~~p~ 135 (185)
.+....|-||.+--..+ .-|. |. .-+|..|+.+|+.. .....||.|+.++....|.
T Consensus 177 ~~~i~~C~iC~~iv~~g------~~C~~C~---~~~H~~C~~~~~~~------~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQG------QSCETCG---IRMHLPCVAKYFQS------NAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TTTCCBCTTTCSBCSSC------EECSSSC---CEECHHHHHHHTTT------CSSCBCTTTCCBCCSCCCC
T ss_pred CCCCCcCcchhhHHhCC------cccCccC---hHHHHHHHHHHHHh------CCCCCCCCCCCCCCCCCCC
Confidence 34588999999876431 2343 65 66999999999975 2457999999998876554
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.20 E-value=0.037 Score=37.11 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=35.3
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.++...|.||++... +..+.||. +. +-..|+.+ ...||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~----~~v~~pCg-----H~~~C~~C~~~------------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV----NWVLLPCR-----HTCLCDGCVKY------------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCC----CCEETTTT-----BCCSCTTHHHH------------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCC----CEEEECCC-----ChhhhHHHHhc------------CCCCCCCCcchhce
Confidence 345789999998753 46888987 34 77789862 37899999988754
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.50 E-value=0.033 Score=37.62 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=33.6
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+...|.||++... ++.+.||. +. +...|+.+ ...||+|+.++...
T Consensus 24 ~~~~C~IC~~~~~----~~~~~pCg-----H~~~C~~C~~~------------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNI----AIVFVPCG-----HLVTCKQCAEA------------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCC----CBCCSSSC-----CCCBCHHHHHH------------CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCC----CEEEecCC-----CHHHHHHHhhC------------CCCCccCCceecCc
Confidence 4568999998753 46777875 55 88999842 27899999988643
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.52 E-value=0.097 Score=41.97 Aligned_cols=51 Identities=8% Similarity=-0.034 Sum_probs=40.0
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.+.-.|.||++--. .|.+.||. +.+=+.|+.+|+... + ..||+|+.++...
T Consensus 104 p~~f~CPI~~elm~----DPV~~~~G-----htfer~~I~~~l~~~------~-~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR----EPCITPSG-----ITYDRKDIEEHLQRV------G-HFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS----SEEECTTS-----CEEEHHHHHHHHHHT------C-SBCTTTCCBCCGG
T ss_pred cHhhcccCccccCC----CCeECCCC-----CEECHHHHHHHHHhC------C-CCCCCCcCCCChh
Confidence 45679999998764 48888864 568899999999863 1 2699999998754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=91.41 E-value=0.036 Score=48.63 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=36.1
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
++...|.||++... ++...||. +. +...|+.+| ..||+|+.++.-.
T Consensus 293 ~~~~~C~IC~~~~~----~~v~lpCg-----H~~fC~~C~~~~------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEV----SVVFIPCG-----HLVVCQECAPSL------------RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBC----CEEEETTC-----CEEECTTTGGGC------------SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCC----ceEEcCCC-----ChhHhHHHHhcC------------CcCCCCCCCccCe
Confidence 45689999999764 46777876 55 889998766 5799999998754
No 70
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.13 E-value=0.16 Score=36.40 Aligned_cols=56 Identities=25% Similarity=0.478 Sum_probs=36.6
Q ss_pred CCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHH--H------hccCCCCCCccccCCCcce
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWID--E------KQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~--~------~~~~~~~~~~~Ce~Ck~~y 129 (185)
.....|-||-.-+.+ -+.||+ |. +.+|..||.+--. . ..+.+......|+.|+.=.
T Consensus 13 ~~D~~C~VC~~~t~~-----~l~pCRvC~---RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-----SLFPCRVCT---RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CCSCCCTTTCCCCSS-----CCSSCSSSS---SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCCcccCcccccccc-----ceecccccc---ccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 356899999754332 357898 76 9999999987411 1 0111235668999996543
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.33 E-value=0.58 Score=39.87 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCCCCeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccC--CCcceeee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ--CNTKYFIV 132 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~--Ck~~y~i~ 132 (185)
.......|.||++-..+ |..+ .|. +.+=+.||.+|+... ....||+ |+..+...
T Consensus 177 ~~~~el~CPIcl~~f~D----PVts~~CG-----HsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 177 GGKIELTCPITCKPYEA----PLISRKCN-----HVFDRDGIQNYLQGY------TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SSBCCSBCTTTSSBCSS----EEEESSSC-----CEEEHHHHHHHSTTC------SCEECSGGGCSCEECGG
T ss_pred CCceeeECcCccCcccC----CeeeCCCC-----CcccHHHHHHHHHhC------CCCCCCcccccCcCchh
Confidence 34567899999997643 6664 554 668999999999742 3579999 99988754
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=86.84 E-value=0.16 Score=34.86 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=33.2
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCcc-ccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKW-VHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~-VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
+...|.||++... ++...||. +. +=..|+.+| ..||+|+.++.-.
T Consensus 17 ~~~~C~IC~~~~~----~~v~~pCg-----H~~~C~~C~~~~------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEI----NSTFCPCG-----HTVCCESCAAQL------------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBC----CEEEETTC-----BCCBCHHHHTTC------------SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccC----cEEEECCC-----CHHHHHHHHHhc------------CcCCCCCchhhCe
Confidence 4578999998753 46778876 33 557887544 3899999998754
No 73
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.94 E-value=0.6 Score=31.82 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=34.1
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
..+...|.||...+.++ .+.|+- |. +=-..+|+.||.- ..-+.....|+.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~-~~~ll~-CD--~C~~~~H~~Cl~~------~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQN-SNVILF-CD--MCNLAVHQECYGV------PYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCS-SSCEEE-CS--SSCCEEEHHHHTC------SSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CCCEEE-CC--CCCCccccccCCC------CcCCCCCcCCccCcC
Confidence 45678999999876433 345554 44 3337899999842 112345688888865
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.78 E-value=0.29 Score=34.70 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=34.7
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
++...|.||...+.++ .+.|+. |. +-...+|..||.-= .-+.....|+.|...-
T Consensus 23 ~~~~~C~vC~~~~s~~-~~~ll~-CD--~C~~~fH~~Cl~p~------~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQN-SNVILF-CD--MCNLAVHQECYGVP------YIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCS-EEEEEE-CS--SSCCCCCHHHHTCS------SCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCC-CCCEEE-CC--CCCchhhcccCCCC------ccCCCceECccccCcc
Confidence 4568999999876432 345554 43 33378999998421 1234678999997653
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=82.39 E-value=0.89 Score=30.89 Aligned_cols=52 Identities=23% Similarity=0.686 Sum_probs=34.1
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccC---CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCL---CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~---C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
++++...| ||..... +.||. |. |. ..|+|..||. |.. .+.....|+.|...-
T Consensus 12 d~~~~~~C-~C~~~~~----g~MI~-CD~~~C~--~~wfH~~Cvg--l~~----~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY----GEMIG-CDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC----SSEEC-CSCSSCS--CCCEETTTTT--CSS----CCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC----CCEeE-eeCCCCC--CccEecccCC--cCc----CCCCCEECCCCCccc
Confidence 34567788 8987542 35665 43 54 2699999996 322 234679999997643
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=81.61 E-value=1.1 Score=29.20 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=34.5
Q ss_pred CeeeEecccccCCCCCceee-ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 69 KYCWVCFATHEDDRNALWVQ-PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 69 ~~CrIC~~~~~~~~~~~li~-PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
..|.||++--. +|.+. ||. ..+=+.|+.+|+... .+||+++.++..
T Consensus 4 ~~CpIs~~~m~----dPV~~~~sG-----~~yer~~I~~~l~~~--------~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR----RPVLSPKSR-----TIFEKSLLEQYVKDT--------GNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS----SEEEETTTT-----EEEEHHHHHHHHHHH--------SBCTTTCCBCCG
T ss_pred EEecCCCCCCC----CCEEeCCCC-----cEEcHHHHHHHHHhC--------CCCcCCcCCCCh
Confidence 46888887654 36777 433 668899999999863 349999998864
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.56 E-value=0.99 Score=34.89 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=36.0
Q ss_pred cCCCCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhcc---CCCCCCccccCCCc
Q psy3895 63 ERSVDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQK---GNAFTQVACPQCNT 127 (185)
Q Consensus 63 ~~~~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~---~~~~~~~~Ce~Ck~ 127 (185)
+++..+..|++|.++. .|+- |. |. +.+|..||..=+....- ........|+.|..
T Consensus 58 d~Dg~~d~C~vC~~GG------~Llc-CD~Cp---r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEGG------NLIC-CDFCH---NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CTTSCBCSCSSSCCCS------SEEE-CSSSC---CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred cCCCCCCeecccCCCC------cEEe-CCCCC---CeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456678999999875 2442 33 55 78999999865531100 01356799999974
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.46 E-value=0.83 Score=30.56 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=23.5
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC--CCCCCccccHHHH
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL--CRGTSKWVHQACL 104 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~--C~GS~k~VH~~CL 104 (185)
++....|-+|.....+ +..+|. |. |. .|+|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~--~~~mI~-CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVND--DQDAIL-CEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCT--TSCEEE-BTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCC--CCCeEe-cccCcc---ccCchhcc
Confidence 4567889999987654 356776 74 66 99999997
No 79
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=78.32 E-value=0.43 Score=34.19 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=32.1
Q ss_pred cCCCCCCeeeEecccccCCCCCceee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccC-CCc
Q psy3895 63 ERSVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQ-CNT 127 (185)
Q Consensus 63 ~~~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~-Ck~ 127 (185)
.++++...| ||..... +.||. =|.|. ..|+|..|+. |.. .......|+. |..
T Consensus 21 ~~~~~~~yC-iC~~~~~----g~MI~CD~c~C~--~eWfH~~CVg--l~~----~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY----GPMVACDNPACP--FEWFHYGCVG--LKQ----APKGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCS----SSEECCCSSSCS--CSCEETTTSS--CSS----CTTSCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCC----CCEEEecCCCCc--cccCcCccCC--CCc----CCCCCccCChhhcc
Confidence 445667888 9987542 24663 34454 3799999985 222 2345799999 874
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=77.09 E-value=0.62 Score=31.28 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
....|.||.++. .|+. |. +=-+.+|..||.-.+... +.....|+.|...-
T Consensus 11 ~~~~C~vC~~~~------~ll~-Cd--~C~~~~H~~Cl~P~l~~~----P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGT------DVLR-CT--HCAAAFHWRCHFPAGTSR----PGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCT------TCEE-CS--SSCCEECHHHHCTTTCCC----CSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCC------eEEE-CC--CCCCceecccCCCccCcC----CCCCEECccccCCC
Confidence 456799997542 2443 43 334889999996665543 34679999998653
No 81
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=71.97 E-value=0.73 Score=30.50 Aligned_cols=51 Identities=20% Similarity=0.562 Sum_probs=31.0
Q ss_pred CCCCCCeeeEecccccCCCCCceee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
+.++...| ||..... +.||. =|.|+ ..|+|..|+. |.. .+.....|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~----g~MI~CD~c~C~--~~WfH~~Cvg--l~~----~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY----GEMIGCDNEQCP--IEWFHFSCVS--LTY----KPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC----SEEEECSCTTCS--SCEEETGGGT--CSS----CCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC----CCeeeeeCCCCC--cccEecccCC--cCc----CCCCCEECcCccc
Confidence 34566778 8987532 35765 22254 3799999986 222 2346788998864
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.89 E-value=1.5 Score=28.61 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=35.3
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
++.+...|.||.....++ .+.|+. |. +=-+.+|+.||.-=+..... .+.....|+.|...
T Consensus 2 ~~~~~~~C~vC~~~~~~~-~~~ll~-Cd--~C~~~~H~~C~~p~l~~~~~-~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEA-PNEMVI-CD--KCGQGYHQLCHTPHIDSSVI-DSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCCBSSSCCCCCBT-TBCEEE-CS--SSCCEEETTTSSSCCCHHHH-HSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCC-CCCEEE-CC--CCChHHHhhhCCCccccccc-CCCCCEECCCCcCc
Confidence 356778999999875432 344554 33 33388999998532211100 02356888888653
No 83
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.52 E-value=1.4 Score=29.52 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred cceeeeecCCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 56 GVVVLEIERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 56 ~~~~~e~~~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
+++..|..++++...| ||.....+ +..||.==.|. .|+|..|+.-= . .........|+.|+.+-
T Consensus 4 ~~~~~e~~~~~~~~~C-~C~~~~~~--g~~mI~Cd~C~---~W~H~~Cvg~~--~--~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 4 GSSGMERGVDNWKVDC-KCGTKDDD--GERMLACDGCG---VWHHTRCIGIN--N--ADALPSKFLCFRCIELS 67 (72)
T ss_dssp CSCCCSCSSCSSEECC-TTCCCSCC--SSCEEECSSSC---EEEETTTTTCC--T--TSCCCSCCCCHHHHHHC
T ss_pred ccccccCCCCCcceEe-eCCCccCC--CCcEEECCCCC---CccCCeeeccC--c--cccCCCcEECCCccCCC
Confidence 3444454556667788 79776432 34688722364 99999997321 0 01123568899887643
No 84
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=65.04 E-value=1.1 Score=29.36 Aligned_cols=50 Identities=22% Similarity=0.617 Sum_probs=30.6
Q ss_pred CCCCCeeeEecccccCCCCCceee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
+++...| ||..... +.||. =|.|. ..|+|..||. |.. .+.+...|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~----g~mi~CD~cdC~--~~wfH~~Cvg--l~~----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY----GEMIGCDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC----SEEEECSCTTCS--SCEEETGGGT--CSS----CCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC----CCEEEeCCCCCC--CceEehhcCC--CCc----CCCCCEECcCccC
Confidence 4556777 8987642 35664 12253 3799999996 332 2346788988864
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.94 E-value=5.1 Score=27.19 Aligned_cols=58 Identities=21% Similarity=0.543 Sum_probs=38.0
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
.+.+...| ||....++ +..||.==.|. .|+|..|+.-=.... .......|+.|.....
T Consensus 8 ~~~~~~~C-~C~~~~d~--~~~MIqCd~C~---~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNV--NHFMIECGLCQ---DWFHGSCVGIEEENA---VDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCCS-TTSCSCCS--SSCEEEBTTTC---CEEEHHHHTCCHHHH---TTCSBBCCTTTTTTSC
T ss_pred ccCCccEE-EcCCccCC--CCceEEcCCCC---CcEEeeecCcccccc---cCCCeEECCCcccccC
Confidence 45566778 89876532 45788733475 999999985322221 1135799999997654
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.67 E-value=14 Score=26.16 Aligned_cols=53 Identities=21% Similarity=0.576 Sum_probs=34.0
Q ss_pred CCCCCCeeeEecccccCCCCCceee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
+.++...| ||..... ..||. =|.|. ..|+|..|+. |.. .......|+.|...-
T Consensus 32 d~~e~~yC-iC~~~~~----g~MI~CD~~dC~--~~WfH~~CVg--l~~----~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY----GEMIGCDNPDCS--IEWFHFACVG--LTT----KPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC----SCCCCCSCSSCS--CCCCCSTTTT--CSS----CCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC----CCEeEecCCCCC--CCCEecccCC--cCc----CCCCCEECcCccCcC
Confidence 34566788 9987642 24654 23354 2699999986 222 234679999997643
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.94 E-value=1.4 Score=27.83 Aligned_cols=47 Identities=28% Similarity=0.646 Sum_probs=29.4
Q ss_pred eeeEecccccCCCCCceeeccC--CCCCCccccHHHHHHHHHHhccCCCCCCccccCCC
Q psy3895 70 YCWVCFATHEDDRNALWVQPCL--CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 126 (185)
Q Consensus 70 ~CrIC~~~~~~~~~~~li~PC~--C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck 126 (185)
.|-||.....+ +..||. |. |. .|+|..|+.-=..... .....|+.|+
T Consensus 4 ~cc~C~~p~~~--~~~mI~-Cd~~C~---~WfH~~Cvgl~~~~~~----~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD--KVDWVQ-CDGGCD---EWFHQVCVGVSPEMAE----NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT--TCCEEE-CTTTTC---CEEETTTTTCCHHHHH----HSCCCCSCC-
T ss_pred cCCCCcCccCC--CCcEEE-eCCCCC---ccCcccccCCCccccC----CCCEECCCCC
Confidence 46678776543 457887 54 76 9999999753222211 1457888884
No 88
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=63.05 E-value=1.2 Score=29.03 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=30.5
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC---CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL---CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~---C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
+++...| ||..... +.||. |. |. ..|+|..|+. |.. .+.+...|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~----g~mi~-CD~~~C~--~~wfH~~Cvg--l~~----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY----GEMIG-CDNPDCP--IEWFHFACVD--LTT----KPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC----SEEEE-CSCTTCS--SCEEETGGGT--CSS----CCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC----CCeeE-eeCCCCC--CCCEecccCC--ccc----CCCCCEECcCccC
Confidence 3566778 8987542 35665 33 54 2699999996 322 2345788988864
No 89
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.61 E-value=6.4 Score=26.71 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=34.1
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC---CCCCCccccHHHHHHHHHHhccC---CCCCCccccCCCcc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL---CRGTSKWVHQACLNRWIDEKQKG---NAFTQVACPQCNTK 128 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~---C~GS~k~VH~~CL~~Wi~~~~~~---~~~~~~~Ce~Ck~~ 128 (185)
+++...| ||..... ...+|. |. |. .|+|..|+.- ...... +......|+.|+..
T Consensus 13 ~~~~~~C-iC~~~~~---~g~MI~-CD~~~C~---~W~H~~CVgi--~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSLE---TDSMIQ-CEDPRCH---VWQHVGCVIL--PDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCCC---CSCEEE-CSSTTTC---CEEEHHHHSC--CCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcCC---CCCEEE-ECCccCC---ccccCEEEcc--ccccccccccCCCCEECCCCCcc
Confidence 3567788 8987732 357887 65 77 6999999731 111000 12357899999764
No 90
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.36 E-value=1.6 Score=33.64 Aligned_cols=56 Identities=23% Similarity=0.657 Sum_probs=35.6
Q ss_pred CCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
+++...| ||....++ +..||.=-.|. .|+|..|+.--.... .......|+.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~--~~~mi~Cd~C~---~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDE--SKFYIGCDRCQ---NWYHGRCVGILQSEA---ELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCT--TSCEEECTTTC---CEEEHHHHTCCHHHH---TTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCC--CCCEeECCCCC---chhChhhcCCchhhc---cCccCeecCCCcchh
Confidence 4567889 99876533 35688733465 999999984221111 124578999998754
No 91
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.31 E-value=3.1 Score=30.53 Aligned_cols=31 Identities=35% Similarity=0.696 Sum_probs=23.2
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC---CCCCCccccHHHHH
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL---CRGTSKWVHQACLN 105 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~---C~GS~k~VH~~CL~ 105 (185)
.+++..|.+|.++ +.|+. |. |. +++|..||.
T Consensus 12 ~~~~~~C~~C~~~------G~ll~-CD~~~Cp---~~fH~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGDG------GELVM-CDKKDCP---KAYHLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCCC------SEEEE-CCSTTCC---CEECTGGGT
T ss_pred CCCCCCCCcCCCC------CcEeE-ECCCCCC---cccccccCc
Confidence 4567889999843 24665 76 66 899999996
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.28 E-value=0.85 Score=36.58 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
++.....|.+|..++ .|+- | .|--+.+|..||.--+.. .+.....|+.|...-
T Consensus 3 ~d~~~~~C~~C~~~g------~ll~-C--d~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGG------DLLC-C--EKCPKVFHLTCHVPTLLS----FPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCCE------EEEE-C--SSSSCEECTTTSSSCCSS----CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCC------ceEE-c--CCCCCccCCccCCCCCCC----CCCCCEEeCceeCcc
Confidence 345667899998653 2443 3 344488999998543332 134568999998754
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=60.17 E-value=1.9 Score=28.14 Aligned_cols=52 Identities=21% Similarity=0.489 Sum_probs=33.7
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
+++....|.||.... .|+. |. +--+.+|..||.-=+.. .+.....|+.|..+
T Consensus 7 ~~~~~~~C~vC~~~g------~ll~-CD--~C~~~fH~~Cl~p~l~~----~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGG------EIIL-CD--TCPRAYHMVCLDPDMEK----APEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCS------SEEE-CS--SSSCEEEHHHHCTTCCS----CCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCC------cEEE-CC--CCChhhhhhccCCCCCC----CCCCceECcccccc
Confidence 345678999998742 3443 33 33489999998542222 23467999999764
No 94
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=60.01 E-value=0.35 Score=32.39 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=30.0
Q ss_pred CCCCeeeEecccccCCCCCceeeccC---CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCL---CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~---C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
++...| ||....+ ++.+|. |. |. .|.|..|+.-=-......+......|+.|+.
T Consensus 8 e~~v~C-~C~~~~~---~g~mI~-CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMV---NDSMIQ-CEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSC---CSCEEE-CSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcC---CCCEEE-ECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 7865433 346787 74 86 8999999721000000001123578999874
No 95
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=59.65 E-value=0.88 Score=35.69 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
+...|.+|..++ .|+- | .+--+.+|..||.--+.. .+.....|+.|+..-
T Consensus 3 ~~~~C~~C~~~g------~ll~-C--d~C~~~~H~~C~~p~l~~----~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG------ELLC-C--EKCPKVFHLSCHVPTLTN----FPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS------SCEE-C--SSSSCEECTTTSSSCCSS----CCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC------eeee-c--CCCCcccCccccCCCCCC----CCCCCEECccccCcc
Confidence 457799998653 2332 3 333488999997443322 134568999998754
No 96
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=58.14 E-value=6.3 Score=26.25 Aligned_cols=57 Identities=19% Similarity=0.394 Sum_probs=35.4
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
+.++...|.||..... +..||. |. +--.|+|..||.--.. ........|+.|..+..
T Consensus 14 ~~~~~~~C~~C~~~~~---~~~mi~-CD--~C~~wfH~~Cv~~~~~----~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD---GSPMIG-CD--DCDDWYHWPCVGIMAA----PPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCS---SCCEEE-CS--SSSSEEEHHHHTCSSC----CCSSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCC---CCCEEE-cC--CCCcccccccCCCCcc----CCCCCCEEChhccCchh
Confidence 3455677999987653 235665 43 3349999999842111 11235689999987653
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.54 E-value=7.1 Score=24.02 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=29.5
Q ss_pred eeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 70 ~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
.|.||....++ +.|+. |. +--+++|..||.-=+. ..+.....|+.|..
T Consensus 2 ~C~vC~~~~~~---~~ll~-Cd--~C~~~~H~~Cl~p~l~----~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED---DKLIL-CD--ECNKAFHLFCLRPALY----EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC---SCCEE-CT--TTCCEECHHHHCTTCC----SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC---CCEEE-CC--CCChhhCcccCCCCcC----CCCCCcEECcCccc
Confidence 58889876532 34443 33 3348999999842111 12345789999975
No 98
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=54.48 E-value=5.1 Score=31.94 Aligned_cols=59 Identities=25% Similarity=0.520 Sum_probs=35.1
Q ss_pred CCeeeEecccccCCC-CCceeeccC-CCCCCccccHHHHHHHHH--HhccCC-CCCCccccCCCccee
Q psy3895 68 LKYCWVCFATHEDDR-NALWVQPCL-CRGTSKWVHQACLNRWID--EKQKGN-AFTQVACPQCNTKYF 130 (185)
Q Consensus 68 ~~~CrIC~~~~~~~~-~~~li~PC~-C~GS~k~VH~~CL~~Wi~--~~~~~~-~~~~~~Ce~Ck~~y~ 130 (185)
+..|.||.....++. +..||. |. |. .|+|..|..-=-. +..... ......|+.|.....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIq-Cd~C~---~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQ-CGKCD---RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEE-CTTTC---CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEE-CCCCC---cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 467999987765432 346887 54 65 9999999731000 000000 012689999988654
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=50.55 E-value=9.1 Score=27.14 Aligned_cols=51 Identities=24% Similarity=0.623 Sum_probs=31.7
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
++...| ||....+ ++.||.==.|. .|+|..|+.- . .........|+.|+.+
T Consensus 26 ~d~vrC-iC~~~~~---~~~mi~Cd~C~---~w~H~~C~~~--~---~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHD---DGYMICCDKCS---VWQHIDCMGI--D---RQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSC---SSCEEEBTTTC---BEEETTTTTC--C---TTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCccC---CCcEEEcCCCC---CcCcCcCCCC--C---ccCCCCCEECCCCcCC
Confidence 344678 8876643 24677622365 9999999831 1 0112346999999753
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=48.18 E-value=6.3 Score=28.46 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCeeeEecccccCCCCCceeecc-CCCCCCccccHHHHHHHH--HHhccCCCCCCccccCCCcceee
Q psy3895 68 LKYCWVCFATHEDDRNALWVQPC-LCRGTSKWVHQACLNRWI--DEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 68 ~~~CrIC~~~~~~~~~~~li~PC-~C~GS~k~VH~~CL~~Wi--~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
...|.||.....+ +..|+.=| .|. .|+|..|+.-=- ......+......|+.|...-.+
T Consensus 3 ~~~C~iC~~p~~~--~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVND--DQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCT--TSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCC--CCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 3579999988644 34688855 787 999999973111 00000012356899999876554
No 101
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=46.55 E-value=1.5 Score=28.66 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=32.5
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
++.....|.||.... .|+. | .+--+.+|..||.-=+.+ .+.....|+.|..+
T Consensus 5 ~d~~~~~C~vC~~~g------~ll~-C--d~C~~~fH~~Cl~ppl~~----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGG------ELLC-C--DTCPSSYHIHCLNPPLPE----IPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCS------SCBC-C--SSSCCCBCSSSSSSCCSS----CCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCC------CEEE-c--CCCCHHHcccccCCCcCc----CCCCccCChhhcCc
Confidence 345678899998642 2332 3 333477999998532221 23457899999764
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.09 E-value=4.7 Score=28.43 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=33.1
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
..+...|.||.....+ +.|+. |. |. +.+|..||.-=+. .-+.....|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~---~~ll~-CD~C~---~~~H~~Cl~Ppl~----~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED---DKLLF-CDGCD---DNYHIFCLLPPLP----EIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG---GGCEE-CTTTC---CEECSSSSSSCCS----SCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC---CCEEE-cCCCC---chhccccCCCCcc----cCCCCCcCCccCcCc
Confidence 4456789999987643 23443 43 54 7899999841111 113456889999654
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.21 E-value=24 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=35.1
Q ss_pred cCCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHH-----HHhccCCCCCCccccCCCc
Q psy3895 63 ERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWI-----DEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 63 ~~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi-----~~~~~~~~~~~~~Ce~Ck~ 127 (185)
+++..+..|+||.++. .|+- |. +--+.+|..||.+=+ .+.. +......|..|..
T Consensus 52 d~Dg~~~~C~vC~dGG------~Llc-Cd--~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGG------NLIC-CD--FCHNAFCKKCILRNLGRRELSTIM--DENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCCS------EEEE-CS--SSSCEEEHHHHHHHTCHHHHHHHT--CTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCCC------eeEe-cC--CCchhhhHHHhCCCcchhHHHHhc--cCCCCeEcCCcCC
Confidence 4456678899999864 2442 32 334889999998752 2211 1356799999954
No 104
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.26 E-value=8.7 Score=24.74 Aligned_cols=55 Identities=25% Similarity=0.646 Sum_probs=35.3
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcc
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~ 128 (185)
+++...|.||.....+ +..||. |. |. .|+|..|+.--.... .......|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~--~~~mI~-Cd~C~---~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAA--DEFWIC-CDLCE---MWFHGKCVKITPARA---EHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCS--SSCEEE-CSSSC---CEEETTTTTCCTTGG---GGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCC--CCCEEE-ccCCC---CCCCccccCcChhHh---cCCCcEECCCCcCc
Confidence 4567889999877543 356887 43 54 999999973221110 01356889988654
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.88 E-value=18 Score=25.94 Aligned_cols=36 Identities=25% Similarity=0.644 Sum_probs=24.5
Q ss_pred CCCeeeEecccccCC---CCCceeeccC-CCCCCccccHHHHHH
Q psy3895 67 DLKYCWVCFATHEDD---RNALWVQPCL-CRGTSKWVHQACLNR 106 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~---~~~~li~PC~-C~GS~k~VH~~CL~~ 106 (185)
....|.+|+...+.. ..++|+. |. |. +.+|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~-C~~C~---~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS-CADCG---NSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE-CTTTC---CEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE-hhhcC---CCCCCchhcC
Confidence 457899999875321 2346776 43 54 7899999963
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.24 E-value=5.2 Score=27.92 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=37.5
Q ss_pred CCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
....|.||.....+. .+.|+- |. |. +.+|+.||.==+.............|+.|......
T Consensus 15 ~~~~C~vC~~~~~~~-~~~ll~-CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVAS-GNQLVE-CQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCT-TCCEEE-CSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCC-CCceEE-CCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 467899999876532 345554 33 54 78999998533322100013457899999877654
No 107
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.10 E-value=13 Score=18.19 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=10.9
Q ss_pred CCccccCCCcceee
Q psy3895 118 TQVACPQCNTKYFI 131 (185)
Q Consensus 118 ~~~~Ce~Ck~~y~i 131 (185)
+...|++|+..|.-
T Consensus 2 k~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 2 KPFSCSLCPQRSRD 15 (27)
T ss_dssp CCEECSSSSCEESS
T ss_pred cCccCCCcChhhCC
Confidence 35789999998863
No 108
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=35.31 E-value=14 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=28.2
Q ss_pred EecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccC-CCCCCccccCCCc
Q psy3895 73 VCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKG-NAFTQVACPQCNT 127 (185)
Q Consensus 73 IC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~-~~~~~~~Ce~Ck~ 127 (185)
.|+.+..-+-+...+.=+.|+ +|+|..||+.=. .+... -..-...|.+|..
T Consensus 7 yCYCG~~~~~~~~mLqC~~C~---qWFH~~Cl~~~~-~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 7 SVDEENGRQLGEVELQCGICT---KWFTADTFGIDT-SSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ----CTTCCTTSCEEECTTTC---CEEEGGGGTCCC-TTCCTTCCSEEEECTTTST
T ss_pred EEEcCCCCCCCceeEeecccc---ceecHHHhcccc-cCccccceeEEEEccccCC
Confidence 677665433356677777887 999999985111 00000 0122367999986
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.08 E-value=5.7 Score=28.41 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCCeeeEecccccCCCCCceeeccC-CCCCCccccHHHHHHHH
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQPCL-CRGTSKWVHQACLNRWI 108 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~PC~-C~GS~k~VH~~CL~~Wi 108 (185)
..++..|.||.+..+. .+|+. |. |. +.+|..||.-.+
T Consensus 4 ~~~~~~C~~C~~~g~~---~~ll~-C~~C~---~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL---LDQFF-CTTCG---QHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCCCCT---TTSEE-CSSSC---CEECTTTTTCCC
T ss_pred CCCCCCCcCCCCCCCC---cCCeE-CCCCC---CCcChHHhCCcc
Confidence 4567899999987642 34553 43 44 889999997654
No 110
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.56 E-value=15 Score=17.87 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=10.3
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998864
No 111
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.82 E-value=18 Score=19.07 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|+.|+..|.-
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR 23 (37)
T ss_dssp SSSBCCTTTCCCBSS
T ss_pred CCCccCCCCCcccCc
Confidence 456899999998863
No 112
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.77 E-value=16 Score=17.88 Aligned_cols=14 Identities=14% Similarity=0.710 Sum_probs=10.8
Q ss_pred CCccccCCCcceee
Q psy3895 118 TQVACPQCNTKYFI 131 (185)
Q Consensus 118 ~~~~Ce~Ck~~y~i 131 (185)
+...|++|+..|.-
T Consensus 2 k~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 2 RPYSCSVCGKRFSL 15 (28)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 35789999998864
No 113
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.57 E-value=18 Score=17.47 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=10.2
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|+.|+..|.-
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4679999988763
No 114
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.55 E-value=34 Score=22.62 Aligned_cols=57 Identities=21% Similarity=0.509 Sum_probs=33.0
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhcc-CCCCCCccccCCCcce
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQK-GNAFTQVACPQCNTKY 129 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~-~~~~~~~~Ce~Ck~~y 129 (185)
.+...| ||..... +..||.==.|. .|+|..|+.-=...... ........|+.|....
T Consensus 14 ~~~~~C-~C~~~~~---~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHN---NRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCC---SSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccC---CCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345778 8877653 24688722465 99999998422111000 0012468899987654
No 115
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.28 E-value=14 Score=18.28 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.5
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 4789999998863
No 116
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=31.71 E-value=12 Score=27.14 Aligned_cols=48 Identities=19% Similarity=0.523 Sum_probs=34.3
Q ss_pred CCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 67 ~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
....|..|+-... .||. |. .+|.=..||..-+. ....|++|+.++...
T Consensus 27 G~~nCKsCWf~~k-----~LV~-C~----dHYLCl~CLtlmL~--------~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVE-CN----NHYLCLNCLTLLLS--------VSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEE-CS----SCEEEHHHHHHTCS--------SSSEETTTTEECCCC
T ss_pred CcccChhhccccC-----Ceee-ec----chhhHHHHHHHHHh--------hccCCcccCCcCCcc
Confidence 4567888876542 4776 33 48999999865553 358999999988654
No 117
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.64 E-value=10 Score=18.43 Aligned_cols=13 Identities=15% Similarity=0.751 Sum_probs=10.3
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|+.|+..|.-
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3679999988864
No 118
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.28 E-value=16 Score=17.90 Aligned_cols=13 Identities=31% Similarity=1.088 Sum_probs=10.3
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 1rik_A 2 KFACPECPKRFMR 14 (29)
T ss_dssp CEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 3679999998864
No 119
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.27 E-value=18 Score=18.64 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 5 ~k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 5 SSGYVCALCLKKFVS 19 (35)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeECCCCcchhCC
Confidence 356899999998864
No 120
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.00 E-value=18 Score=17.58 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.3
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3689999998864
No 121
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.55 E-value=24 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 7 GKTHLCDMCGKKFKS 21 (36)
T ss_dssp CSSCBCTTTCCBCSS
T ss_pred CCCeecCcCCCCcCc
Confidence 456899999998863
No 122
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.45 E-value=16 Score=17.67 Aligned_cols=13 Identities=15% Similarity=0.751 Sum_probs=10.0
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 4679999988753
No 123
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.14 E-value=15 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 68 LKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 68 ~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
...|.+|..++ .|+. | .+--+.+|..||.-=+. ..+.....|+.|...-.
T Consensus 2 ~~~C~~C~~~g------~ll~-C--d~C~~~~H~~Cl~p~l~----~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKPG------DLVM-C--NQCEFCFHLDCHLPALQ----DVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCCS------SCCC-C--TTTCCBCCSTTSTTCCS----SCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCCC------ceeE-C--CCCCchhccccCCCCcc----cCCCCCCCCcCccCCCC
Confidence 46799998654 2333 3 34448899999832111 12346789999987643
No 124
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.12 E-value=21 Score=18.54 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|..
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 7 GKPYKCPQCSYASAI 21 (36)
T ss_dssp CCSEECSSSSCEESS
T ss_pred CCCCCCCCCCcccCC
Confidence 456899999998864
No 125
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.00 E-value=20 Score=17.61 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.2
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|+.|+..|.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 4689999988753
No 126
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.85 E-value=20 Score=18.57 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 5 ~k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 5 KRPFVCRICLSAFTT 19 (35)
T ss_dssp CSCEECSSSCCEESS
T ss_pred CcCeeCCCCCcccCC
Confidence 356899999998864
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=28.49 E-value=8.8 Score=34.00 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCceeeccCCCCCCccccHHHHH--HHHHHhccCCCCCCccccCCCcceeee
Q psy3895 83 NALWVQPCLCRGTSKWVHQACLN--RWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 83 ~~~li~PC~C~GS~k~VH~~CL~--~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
..++..||+-. ..-|..|+. .|+....+ ...+.||+|+..+.+.
T Consensus 256 ~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~---~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 256 YTRMKYPSKSI---NCKHLQCFDALWFLHSQLQ---IPTWQCPVCQIDIALE 301 (371)
T ss_dssp SSBCSSEEEET---TCCSSCCEEHHHHHHHHHH---SCCCBCTTTCCBCCGG
T ss_pred cccccccCcCC---cCCCcceECHHHHHHHhhc---CCceeCCCCCcccCHH
Confidence 34677787754 667998854 46665432 4679999999988764
No 128
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=28.02 E-value=20 Score=31.62 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=29.7
Q ss_pred CceeeccCCCCCCccccHHHH--HHHHHHhccCCCCCCccccCCCcceeee
Q psy3895 84 ALWVQPCLCRGTSKWVHQACL--NRWIDEKQKGNAFTQVACPQCNTKYFIV 132 (185)
Q Consensus 84 ~~li~PC~C~GS~k~VH~~CL--~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i~ 132 (185)
.++..||+-. ..-|..|+ ..|+....+ ...+.||+|+..+.+.
T Consensus 223 ~ri~~P~Rg~---~C~HlqCFDl~sfL~~~~~---~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 223 MRLTIPCRAV---TCTHLQCFDAALYLQMNEK---KPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCSSEEEET---TCCCCCCEEHHHHHHHHHH---SCCCBCTTTCSBCCGG
T ss_pred ceeccCCcCC---CCCCCccCCHHHHHHHHhh---CCCeECCCCCcccCHH
Confidence 4566777633 55798884 556665443 4679999999998764
No 129
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.65 E-value=23 Score=18.53 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.1
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 7 GKPFKCSLCEYATRS 21 (36)
T ss_dssp CCSEECSSSSCEESC
T ss_pred CCCccCCCCCchhCC
Confidence 456899999998864
No 130
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.17 E-value=24 Score=18.55 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 7 GRAMKCPYCDFYFMK 21 (37)
T ss_dssp CCCEECSSSSCEECS
T ss_pred CCCeECCCCChhhcc
Confidence 356899999998863
No 131
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.11 E-value=23 Score=18.51 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=11.7
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 7 GLLYDCHICERKFKN 21 (36)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCCCCCccCC
Confidence 456899999988763
No 132
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.98 E-value=22 Score=17.24 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=10.7
Q ss_pred CCccccCCCcceee
Q psy3895 118 TQVACPQCNTKYFI 131 (185)
Q Consensus 118 ~~~~Ce~Ck~~y~i 131 (185)
+...|+.|+..|.-
T Consensus 2 k~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 2 KPYQCDYCGRSFSD 15 (30)
T ss_dssp CCEECTTTCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 34689999998763
No 133
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.94 E-value=23 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2els_A 7 GKIFTCEYCNKVFKF 21 (36)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CCCEECCCCCceeCC
Confidence 456899999998864
No 134
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.80 E-value=16 Score=22.95 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCc
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNT 127 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~ 127 (185)
.+.....|.||.... .|+. |. +--+.+|..||.-=+.. .+.....|+.|..
T Consensus 5 ~~~~~~~C~vC~~~g------~ll~-Cd--~C~~~~H~~Cl~ppl~~----~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSG------QLLM-CD--TCSRVYHLDCLDPPLKT----IPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSS------CCEE-CS--SSSCEECSSSSSSCCCS----CCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCC------eEEE-cC--CCCcceECccCCCCcCC----CCCCceEChhhhC
Confidence 456678899998752 2443 33 33488999998532221 1345678888754
No 135
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.20 E-value=22 Score=18.65 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elo_A 7 GRSYSCPVCEKSFSE 21 (37)
T ss_dssp CCCCEETTTTEECSS
T ss_pred CCCcCCCCCCCccCC
Confidence 456899999998864
No 136
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.69 E-value=23 Score=18.90 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 7 GHLYYCSQCHYSSIT 21 (37)
T ss_dssp SCEEECSSSSCEEEC
T ss_pred CcCeECCCCCcccCC
Confidence 356899999998864
No 137
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.30 E-value=23 Score=16.95 Aligned_cols=12 Identities=17% Similarity=0.600 Sum_probs=9.4
Q ss_pred ccccCCCcceee
Q psy3895 120 VACPQCNTKYFI 131 (185)
Q Consensus 120 ~~Ce~Ck~~y~i 131 (185)
..|++|+..|.-
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 479999988753
No 138
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.18 E-value=15 Score=18.12 Aligned_cols=13 Identities=15% Similarity=0.536 Sum_probs=10.2
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2lvt_A 2 PCQCVMCGKAFTQ 14 (29)
Confidence 3679999988864
No 139
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=24.73 E-value=58 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.3
Q ss_pred eeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 87 VQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 87 i~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
+-||+ +.+=.+|...|... +...|+.|+.++.-
T Consensus 17 mIPCk-----HvFCydCa~~~~~~-------~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKK-------GDKMCPGCSDPVQR 49 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHT-------TCCBCTTTCCBCSE
T ss_pred ecccc-----ccHHHHHHHHHHhc-------cCCCCcCcCCeeee
Confidence 46777 56888999999875 35899999999864
No 140
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.30 E-value=32 Score=18.53 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (42)
T 2yte_A 8 EKPYSCAECKETFSD 22 (42)
T ss_dssp CCSCBCTTTCCBCSS
T ss_pred CCCeECCCCCCccCC
Confidence 456899999998864
No 141
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.26 E-value=27 Score=18.16 Aligned_cols=13 Identities=31% Similarity=1.088 Sum_probs=10.3
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 4689999998863
No 142
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.99 E-value=16 Score=17.94 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=10.4
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|+.|+..|.-
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4689999988864
No 143
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=24.14 E-value=26 Score=18.07 Aligned_cols=13 Identities=31% Similarity=0.996 Sum_probs=10.1
Q ss_pred CccccCCCcceee
Q psy3895 119 QVACPQCNTKYFI 131 (185)
Q Consensus 119 ~~~Ce~Ck~~y~i 131 (185)
...|++|+..|.-
T Consensus 2 p~~C~~C~k~f~~ 14 (32)
T 2kfq_A 2 AFACPACPKRFMR 14 (32)
T ss_dssp CSSSSSSCTTHHH
T ss_pred CCCCCCCCcccCC
Confidence 4689999988763
No 144
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.32 E-value=27 Score=19.56 Aligned_cols=12 Identities=25% Similarity=0.922 Sum_probs=9.3
Q ss_pred CCccccCCCcce
Q psy3895 118 TQVACPQCNTKY 129 (185)
Q Consensus 118 ~~~~Ce~Ck~~y 129 (185)
.+..|++|++..
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 357899999854
No 145
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.94 E-value=28 Score=23.13 Aligned_cols=52 Identities=27% Similarity=0.584 Sum_probs=31.4
Q ss_pred CCCCCeeeEecccccCCCCCceee--ccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcce
Q psy3895 65 SVDLKYCWVCFATHEDDRNALWVQ--PCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129 (185)
Q Consensus 65 ~~~~~~CrIC~~~~~~~~~~~li~--PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y 129 (185)
+++...| ||..... +.||. =|.|. ..|+|..|+. |.. .......|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~----g~MI~CD~cdC~--~~WfH~~Cvg--l~~----~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY----GEMVGCDNQDCP--IEWFHYGCVG--LTE----APKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC----SSEECCSCTTCS--CCCEEHHHHT--CSS----CCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC----CCEeEeCCCCCC--ccCCcccccc--cCc----CCCCCEECCCCCccc
Confidence 3455677 4766532 25664 23353 4899999985 221 234668899987653
No 146
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.63 E-value=15 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCCCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCcceee
Q psy3895 64 RSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYFI 131 (185)
Q Consensus 64 ~~~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~i 131 (185)
.++....|.+|..+. .|+- |.+--+.+|..||.-=+. .-+.....|+.|...-.+
T Consensus 21 ~d~n~~~C~vC~~~g------~LL~---CD~C~~~fH~~Cl~PpL~----~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 21 LDDSATICRVCQKPG------DLVM---CNQCEFCFHLDCHLPALQ----DVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSSSCCSSSCSSS------CCEE---CTTSSCEECTTSSSTTCC----CCCSSSCCCCSCCCCCSS
T ss_pred cCCCCCcCcCcCCCC------CEEE---CCCCCCceecccCCCCCC----CCcCCCcCCccccCCCcc
Confidence 345667999999763 2443 334448899999833221 123567999999876444
No 147
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.48 E-value=36 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQ 23 (42)
T ss_dssp CCSBCCTTTTCCBSS
T ss_pred CCCeeCCCccchhCC
Confidence 456899999998864
No 148
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.34 E-value=37 Score=18.96 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=12.1
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 10 EKPYKCQVCGKAFRV 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CcccCCCCCCcccCc
Confidence 456899999998864
No 149
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.17 E-value=32 Score=19.01 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 10 EKPYECNECGKAFIW 24 (44)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCCcccCc
Confidence 456899999998853
No 150
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=36 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (42)
T 2eos_A 9 EKPYPCEICGTRFRH 23 (42)
T ss_dssp SCCBCCSSSCCCBSS
T ss_pred CCCEECCCCCCccCC
Confidence 456899999998864
No 151
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.94 E-value=31 Score=18.44 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=11.4
Q ss_pred CCccccCCCcceee
Q psy3895 118 TQVACPQCNTKYFI 131 (185)
Q Consensus 118 ~~~~Ce~Ck~~y~i 131 (185)
+...|++|+..|.-
T Consensus 5 k~~~C~~C~k~f~~ 18 (39)
T 1njq_A 5 RSYTCSFCKREFRS 18 (39)
T ss_dssp SSEECTTTCCEESS
T ss_pred CceECCCCCcccCC
Confidence 56899999998864
No 152
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.72 E-value=48 Score=21.94 Aligned_cols=56 Identities=21% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCCCeeeEecccccCCCCCceeeccCCCCCCccccHHHHHHHHHHhccCCCCCCccccCCCccee
Q psy3895 66 VDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130 (185)
Q Consensus 66 ~~~~~CrIC~~~~~~~~~~~li~PC~C~GS~k~VH~~CL~~Wi~~~~~~~~~~~~~Ce~Ck~~y~ 130 (185)
.+...| ||.....+ +..||.=-.|. .|+|..|+.-=-... .......|+.|.....
T Consensus 8 ~~~~yC-iC~~~~~~--~~~MI~Cd~C~---~WfH~~Cvg~~~~~~---~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 8 TVPVYC-VCRLPYDV--TRFMIECDACK---DWFHGSCVGVEEEEA---PDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCCEET-TTTEECCT--TSCEEECTTTC---CEEEHHHHTCCTTTG---GGBSSCCCHHHHHHHC
T ss_pred CCeeEE-ECCCcCCC--CCCEEEcCCCC---CCEeccccccccccc---CCCCEEECCCCcccCC
Confidence 344455 78765432 45788833465 999999983111000 0124688999986643
No 153
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.03 E-value=41 Score=18.64 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emg_A 10 ENPFICSECGKVFTH 24 (46)
T ss_dssp CCSCBCTTTCCBCSS
T ss_pred CCCEECCccCcccCC
Confidence 456899999998864
No 154
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.90 E-value=42 Score=18.55 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.1
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2enf_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CcCeECCCCCcccCC
Confidence 456899999998864
No 155
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.86 E-value=40 Score=18.73 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=12.1
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2enh_A 10 EKPYECDVCRKAFSH 24 (46)
T ss_dssp SSSCBCTTTCCBCSS
T ss_pred CCCcCCCCcCchhCC
Confidence 456899999998864
No 156
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.76 E-value=38 Score=18.46 Aligned_cols=15 Identities=13% Similarity=0.545 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (44)
T 2en7_A 10 MKPYVCNECGKAFRS 24 (44)
T ss_dssp SSSSCCTTTCCCCSS
T ss_pred CcCeECCCCCCccCC
Confidence 356899999998864
No 157
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=36 Score=18.32 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=11.9
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (41)
T 2ept_A 8 QRVYECQECGKSFRQ 22 (41)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCCCCCCcCC
Confidence 456899999998864
No 158
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.48 E-value=35 Score=18.39 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 9 ~~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQ 23 (42)
T ss_dssp SCCEECSSSCCEESS
T ss_pred CCCeECCCCCcccCC
Confidence 456899999998864
No 159
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.23 E-value=37 Score=18.34 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=12.0
Q ss_pred CCCccccCCCcceee
Q psy3895 117 FTQVACPQCNTKYFI 131 (185)
Q Consensus 117 ~~~~~Ce~Ck~~y~i 131 (185)
.+...|++|+..|.-
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (42)
T 2el5_A 8 ENPYECSECGKAFNR 22 (42)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCccCCCcChhhCC
Confidence 456899999998864
Done!