RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3895
(185 letters)
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 38.7 bits (89), Expect = 2e-05
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 67 DLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCN 126
D+ CW+C ++ + C C G + VH++CL+ W+ AC C
Sbjct: 5 DVPVCWICN----EELGNERFRACGCTGELENVHRSCLSTWLTI------SRNTACQICG 54
Query: 127 TKYFI 131
Y
Sbjct: 55 VVYNT 59
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 33.7 bits (76), Expect = 0.003
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
C VC N L C+ HQ C + +K+ + C +C +
Sbjct: 18 ACVVCRQMTVASGNQL----VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 31.2 bits (70), Expect = 0.017
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKYF 130
C +C + + + C C CL ++++ K T ++CP
Sbjct: 8 CKLCLGEYPVE-QMTTIAQCQCI-----FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61
Query: 131 IVYPYRGL 138
+
Sbjct: 62 GHLQENEI 69
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 30.3 bits (68), Expect = 0.017
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 125
C VC EDD+ LC +K H CL + E G CP C
Sbjct: 3 CKVCRKKGEDDK------LILCDECNKAFHLFCLRPALYEVPDGEWQ----CPAC 47
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.2 bits (69), Expect = 0.028
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 37 TSSSVQSPPGVIQSKSDSAGVVVLEIERSVDLKYCWVCFATHEDDRNALWVQPCLCRGT- 95
+S S P VI+ ++ V E + + ++ V + + + R T
Sbjct: 2 SSGSSGEPEQVIRKYTEELKVAPEE-DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK 60
Query: 96 -SKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129
S H CL K + CP C T Y
Sbjct: 61 CSHAFHLLCLLAMYCNGNKDGSLQ---CPSCKTIY 92
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 29.9 bits (67), Expect = 0.030
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+C VC +D L C H CLN + E G CP+C
Sbjct: 11 FCRVC----KDGGELL-----CCDTCPSSYHIHCLNPPLPEIPNGEWL----CPRCTCP 56
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 30.0 bits (67), Expect = 0.034
Identities = 6/58 (10%), Positives = 12/58 (20%), Gaps = 10/58 (17%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
+C + +C H C + + C C+
Sbjct: 7 ATICRVCQKPGD------LVMCNQCEFCFHLDCHLPALQDVPGEEWS----CSLCHVL 54
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 29.6 bits (66), Expect = 0.045
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
C C ++ D W+ C W H C+ + + CP C+ K
Sbjct: 9 CGACGESYAADEF--WIC---CDLCEMWFHGKCVKITPARAEHIKQYK---CPSCSNK 58
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 28.5 bits (63), Expect = 0.11
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 63 ERSVDLKYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVAC 122
ER VD + C +DD + C G W H C+ + C
Sbjct: 9 ERGVD-NWKVDCKCGTKDDDGERMLA---CDGCGVWHHTRCIGINNADALPSKFL----C 60
Query: 123 PQCNTK 128
+C
Sbjct: 61 FRCIEL 66
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 26.9 bits (59), Expect = 0.50
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTKY 129
YC +C + + ++ LC+ W H +C+ + + + CP C +
Sbjct: 14 YC-LCRQPYNVNH--FMIECGLCQ---DWFHGSCVGIEEENAVDIDIYH---CPDCEAVF 64
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 24.1 bits (52), Expect = 3.1
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 71 CWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQC 125
C VC A ED A ++ C H C++ W+ CP C
Sbjct: 8 CAVCLAELEDGEEARFLPRC-----GHGFHAECVDMWLGSHST--------CPLC 49
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 23.2 bits (50), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 121 ACPQCNTKYFIVYPYRGLLV 140
CPQCN++Y Y LLV
Sbjct: 5 PCPQCNSEY--TYEDGALLV 22
>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 24.3 bits (53), Expect = 5.7
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 41 VQSPPGVIQSKSDSAGVVVLEI-ERSVDLKYCWVCFATHEDDRNAL 85
++ P G + S + +LE E + + ++CF + +DR AL
Sbjct: 48 IELPAGPLPEGSKDSFAALLEFAEEQLRADHVFICFPKNREDRAAL 93
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 23.5 bits (50), Expect = 7.0
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQV-ACPQC 125
YC +C + N + C +W H C+ + + CP C
Sbjct: 18 YC-IC---RQPHNNRFMIC---CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 23.9 bits (51), Expect = 7.2
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 69 KYCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLNRWIDEKQKGNAFTQVACPQCNTK 128
C A+ + + C + H C++RW+ +Q CP N +
Sbjct: 36 IECQANQASATSEECTVAWGVC-----NHAFHFHCISRWLKTRQV--------CPLDNRE 82
Query: 129 Y 129
+
Sbjct: 83 W 83
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 23.6 bits (50), Expect = 8.0
Identities = 11/57 (19%), Positives = 13/57 (22%), Gaps = 6/57 (10%)
Query: 70 YCWVCFATHEDDRNALWVQPCLCRGTSKWVHQACLN-RWIDEKQKGNAFTQVACPQC 125
C VC + E D C W H C+ C C
Sbjct: 18 RC-VCGNSLETDSMIQ----CEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.429
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 661,911
Number of extensions: 27316
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 20
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)