BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3897
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 184 bits (468), Expect = 3e-46, Method: Composition-based stats.
Identities = 88/177 (49%), Positives = 126/177 (71%), Gaps = 3/177 (1%)
Query: 61 LEGYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEI 120
LEG+V+T ++ P GV+ALD EM YT +GLE+ RVTVV+ D +++Y+T VKPD E+
Sbjct: 1033 LEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEV 1092
Query: 121 IDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII 180
+DYNT++SG++ D + TL+DVQ L+ S D+I++GH LE+DL ALK+IH ++
Sbjct: 1093 VDYNTRFSGVTEADLVDTSI-TLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVV 1151
Query: 181 DTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKLLSD 235
DTSVLFPH GLPY+RSL+++++ L Q IQ H S EDA AC+ L++WK+ D
Sbjct: 1152 DTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIRED 1208
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
Query: 61 LEGYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEI 120
L+G+V+T ++ G+YALD EM YT HGLE+ RVTVV+ D R++Y+T VKPD EI
Sbjct: 390 LDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEI 449
Query: 121 IDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII 180
+DYNT++SG++ D + TL VQ L+ F S +I++GH LE+DL ALKLIHS ++
Sbjct: 450 VDYNTRFSGVTEADVAKTSI-TLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVV 508
Query: 181 DTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKL 232
DT+VLFPH G PY+RSL+++ + L Q IQ H+S EDA AC+ L++WK+
Sbjct: 509 DTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKV 562
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
Query: 61 LEGYVKTKPRKSPPPNGY-GVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCE 119
L+G+V+T +K + Y G+YALD EM YT HGLE+ RVTVV+ D R++Y+T VKPD E
Sbjct: 482 LDGFVETF-KKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNE 540
Query: 120 IIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNI 179
I+DYNT++SG++ D + TL VQ L+ F S +I++GH LE+DL ALKLIHS +
Sbjct: 541 IVDYNTRFSGVTEADVAKTSI-TLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTV 599
Query: 180 IDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKL 232
+DT+VLFPH G PY+RSL+++ + L Q IQ H+S EDA AC+ L++WK+
Sbjct: 600 VDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKV 654
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 113/156 (72%), Gaps = 3/156 (1%)
Query: 79 GVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
G+YALD EM YT HGLE+ RVTVV+ D R++Y+T VKPD EI+DYNT++SG++ D +
Sbjct: 406 GIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 465
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSL 198
TL VQ L+ F S +I++GH LE+DL ALKLIHS ++DT+VLFPH G PY+RSL
Sbjct: 466 SI-TLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKRSL 524
Query: 199 KSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKL 232
+++ + L Q IQ H+S EDA AC+ L++WK+
Sbjct: 525 RNLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKV 560
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 168 bits (425), Expect = 4e-41, Method: Composition-based stats.
Identities = 90/177 (50%), Positives = 126/177 (71%), Gaps = 3/177 (1%)
Query: 61 LEGYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEI 120
LEG+VKT ++ G+YALD EM YT +GLE+ RVTVV+ D ++Y+T VKPD EI
Sbjct: 1041 LEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDTFVKPDNEI 1100
Query: 121 IDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII 180
+DYNT++SG++ D + + TL+DVQ L+ S D+I++GH LE+DL ALK+IHS ++
Sbjct: 1101 VDYNTRFSGVTEAD-LADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVV 1159
Query: 181 DTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKLLSD 235
DTSVLFPH GLPY+RSL+++++ L Q IQ H S EDA AC+ L++WK+ D
Sbjct: 1160 DTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKVRED 1216
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 109/162 (67%)
Query: 77 GYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI 136
G ++ALD EM + GL + R+++VN D +IY LVKPD I+DY T+YSGI+ +
Sbjct: 222 GSHIFALDCEMCLSEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLT 281
Query: 137 RNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRR 196
KTL++VQ DL+ +S+ I++GH L+NDL+ +KL H ++DT++++ H G P++
Sbjct: 282 VGAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKP 341
Query: 197 SLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRY 238
SLK + L++SIQ+G HDS EDARAC++L K+L+ +
Sbjct: 342 SLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNGLAF 383
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 6/166 (3%)
Query: 69 PRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYS 128
P S PP + ALD EM T GLE+ RVT+V++ G+++ + LV P I DYNT+YS
Sbjct: 207 PSGSCPPE---IVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYS 263
Query: 129 GISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPH 188
GI+A + TLKD+Q + + V K++I+VGH LENDL +LK+ H+ +IDT+VL+ H
Sbjct: 264 GITAV-MMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKH 322
Query: 189 SFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKL 232
G Y+ L+ + + L + IQ HDS EDA+A +DL L K+
Sbjct: 323 PHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKI 368
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 4/173 (2%)
Query: 63 GYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIID 122
G+V + PP + A+D EMV T +GLE+ARVT+V++ +IY+ VKP+ + D
Sbjct: 259 GWVASAGDFHSPPINPKILAIDCEMVRTENGLEIARVTIVDMKSEVIYDEFVKPESPVTD 318
Query: 123 YNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDT 182
Y T+YSGI+ ++ +RN L DVQ+ L V +++++GH L +DL LK H +IIDT
Sbjct: 319 YVTQYSGIT-EEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDT 377
Query: 183 SVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG---THDSFEDARACIDLILWKL 232
+ ++ H+ G P + SLK + ++ L + IQ HDS EDA AC+DL+ K+
Sbjct: 378 ANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKV 430
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 14/163 (8%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNP 139
V A+D EM+YT G+E+ RVT ++ G+ + +V+P I+DYNT++SGIS I P
Sbjct: 597 VVAVDCEMLYTSLGMELCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISD---INEP 653
Query: 140 YKTLKDVQNDLMGF----------VSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHS 189
T + D + F ++K +I+VGHGLENDL A++LIH IIDTS+L+P
Sbjct: 654 IITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILYP-D 712
Query: 190 FGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKL 232
F Y+ +LK++ + L ++IQ+G HDS EDA A +D++ L
Sbjct: 713 FNPRYKTALKTLALKYLKRTIQTGEHDSMEDALAALDVVKCHL 755
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 11/168 (6%)
Query: 73 PPPN---GYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSG 129
P PN VYALD EMVYT+ G +AR+T+V++ + + VKP +++D NT++SG
Sbjct: 1468 PVPNDQRSTRVYALDCEMVYTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSG 1527
Query: 130 ISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHS 189
++ + P TLK L +V+ D+I++GH LE+DL+A++++H N+IDT++LF +
Sbjct: 1528 LTMEQINSAP-DTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFRST 1586
Query: 190 FGLPYRRSLKSIVSQLLHQSIQSGT-----HDSFEDARACIDLILWKL 232
+ +LK + ++LLH++IQ HDS EDA C+DLI + L
Sbjct: 1587 --RDTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIFYGL 1632
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 82 ALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGI-SAKDFIRNPY 140
ALD E+ YT +G+E+AR+TVV + +I + +KP +I+ NT++SGI AK+
Sbjct: 384 ALDCELCYTTNGMELARLTVVAKES-IIMDVFIKPKGKILSLNTRFSGIHDAKELESGIT 442
Query: 141 KTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSLKS 200
++ +G ++K++I++GHGLENDL A++LIH +IDT++LF H+ G P+R SLK
Sbjct: 443 MDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKY 501
Query: 201 IVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRYN 239
+ + L +IQ+ THDS EDA + + L+ +K S+ N
Sbjct: 502 LTKKYLGTTIQTSTHDSEEDAVSALQLVFYKTKSNESQN 540
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 6/154 (3%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVN-VDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
V +D EM +T G E+ R+T ++ + + + +KP EI+D+NT+YSGI + +
Sbjct: 241 VLGIDCEMGFTTKGFELMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGIHE---LTD 297
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGL-PYRR- 196
+ + + L + ++I++GHGLEND+ A++LIH NIIDTS+LFP+ + P RR
Sbjct: 298 DFLSWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKTGPTRRW 357
Query: 197 SLKSIVSQLLHQSIQSGTHDSFEDARACIDLILW 230
SLK + + L + IQ+G HDS ED+ A ID++ +
Sbjct: 358 SLKDLAFEFLSRRIQTGEHDSCEDSIAAIDIVKY 391
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 101/156 (64%), Gaps = 8/156 (5%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVNV-DGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
V ALD EM YT G E+ R+TVV ++++ +V+P EIID NT++SG+ D R
Sbjct: 223 VLALDCEMAYTSCGYELIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFSGVHEID--RA 280
Query: 139 PYKTLKDVQNDLM--GFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRR 196
KT ++ + + ++++SI++GHGLENDL L++IH IIDT++L+P+ ++
Sbjct: 281 VAKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIHDKIIDTAILYPNG---KFKS 337
Query: 197 SLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKL 232
SL+++ Q L + IQ+G HDS EDA A +D++ KL
Sbjct: 338 SLRNLAFQELSRRIQTGEHDSSEDAIAAMDVVKHKL 373
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 9/157 (5%)
Query: 79 GVYALDTEMVYTVHGLEVARVTVVNV-DGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR 137
V ALD EM +T G E+ R+T+V+ ++Y+ ++KP EIID N+K+SGI I
Sbjct: 319 NVLALDCEMAFTSKGYEMIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIH---HID 375
Query: 138 NPYKTLKDVQNDLM--GFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYR 195
+ T+ + + + ++++SI++GHGL+NDLR ++++H +IDT+VL+P Y+
Sbjct: 376 DTAPTIHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYPAG---KYK 432
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKL 232
SLK++ ++L + IQ G HDS EDA A +D+I KL
Sbjct: 433 SSLKNLSFEILSRRIQGGEHDSSEDAIAAMDVIKKKL 469
>sp|Q4WYA1|REXO3_ASPFU RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1
Length = 645
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 28/179 (15%)
Query: 83 LDTEMVYTVHGLEVARVTVVN-VDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN-PY 140
D EM YT GLE+ R+T V+ G+L+ + LV+P EI+D N+++SG+ + + + PY
Sbjct: 425 FDCEMGYTTLGLELIRLTAVSWPQGKLLLDILVRPMGEILDLNSRFSGVFPEHYQKAIPY 484
Query: 141 KT-----------LKDVQND------LMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTS 183
K+ L+ V++ L F+ D+ ++GH ++NDL A ++IH IIDT
Sbjct: 485 KSTSSPSTTGDGALQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRIIHPTIIDTV 544
Query: 184 VLFPHSFGLPYRRSLKSIVSQLLHQSIQ---SGTHDSFEDARACIDLI------LWKLL 233
+L+PH GLP R LK++V + L + IQ S HDS EDA A DL+ WK+L
Sbjct: 545 LLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIATGDLVRVKAAETWKIL 603
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
Query: 79 GVYALDTEMVYTVHGLEVARVTVVNV-DGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR 137
V ALD EM +T G E+ R+T+V+ + +Y+ +++P E+ID NT++SG+ +D +
Sbjct: 238 NVLALDCEMGFTTMGYEMVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDILY 297
Query: 138 NPYKTLKDVQNDLM--GFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYR 195
K +DV D++ ++++SI++GHGLENDL ++L H+ I+DT++++ S G ++
Sbjct: 298 A--KDYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMY--SVG-RFK 352
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWK 231
SLK++ ++L + IQ G HDS +DA A +D+I K
Sbjct: 353 NSLKNLSFEILSRKIQLGEHDSSQDAIAAMDIIKAK 388
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 9/170 (5%)
Query: 62 EGYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEII 121
E +V TK S N ++ LD EM T G E+ R+++V G + + LVKPD +I+
Sbjct: 213 ENFVPTKCNGSVTDNS-PLFGLDCEMCLTSKGRELTRISLVAEGGGCVMDELVKPDNKIV 271
Query: 122 DYNTKYSGISAKDFIRNPYKT-LKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII 180
DY T +SGI+ K I NP T LKDVQ L + D+++VGH L+ DLRALK+IH +I
Sbjct: 272 DYLTSFSGITKK--ILNPVTTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVI 329
Query: 181 DTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT---HDSFEDARACIDL 227
DTS+L+ G R LK + +L + IQ HD+ EDAR ++L
Sbjct: 330 DTSLLYVREQG--RRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLEL 377
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNP 139
++ LD EM T G E+ R+++V G + + LVKP+ +I+DY T +SGI+ K I NP
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKK--ILNP 285
Query: 140 YKT-LKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSL 198
T LKDVQ L + D+++VGH L+ DLRALK+IH +IDTS+L+ G R L
Sbjct: 286 VTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQG--RRFKL 343
Query: 199 KSIVSQLLHQSIQSGT---HDSFEDARACIDL 227
K + +L + IQ HD+ EDAR ++L
Sbjct: 344 KFLAKAILGKDIQCPDRLGHDATEDARIILEL 375
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNP 139
++ LD EM T G E+ R+++V G + + LVKP+ +I+DY T +SGI+ K I NP
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKK--ILNP 285
Query: 140 YKT-LKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSL 198
T LKDVQ L + D+++VGH L+ DLRALK+IH +IDTS+L+ G R L
Sbjct: 286 VTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQG--RRFKL 343
Query: 199 KSIVSQLLHQSIQSGT---HDSFEDARACIDL 227
K + +L + IQ HD+ EDAR ++L
Sbjct: 344 KFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
>sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX3 PE=1 SV=1
Length = 404
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 102/159 (64%), Gaps = 12/159 (7%)
Query: 79 GVYALDTEMVYTVHGLEVARVTVVNV-DGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR 137
V +LD EM +T G E+ R+T+V+ G+ +++ +++P +I+D N+ +SG+ D
Sbjct: 242 NVLSLDCEMAFTSLGYEMIRLTIVDFFTGKTLFDHVIQPIGDIVDLNSDFSGVHEIDRTN 301
Query: 138 NP-YKTLKDV---QNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLP 193
P YK DV +N ++K+SI++GHGLENDL ++L H+ +IDT++L+ +
Sbjct: 302 CPTYKEALDVFLSEN----LINKNSILIGHGLENDLNVMRLFHNKVIDTAILYSRT---K 354
Query: 194 YRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKL 232
++ SLK++ ++L + IQ+G HDS +DA A +D++ K+
Sbjct: 355 FKVSLKNLAFEVLSRKIQNGEHDSSQDAIATMDVVKVKI 393
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 80 VYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNP 139
++ LD E+ T G E+ R+++V G + + LVKPD +I+DY T +SGI+ + I NP
Sbjct: 222 LFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKE--ILNP 279
Query: 140 YKT-LKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSL 198
T LKDVQ L + D+++VGH L+ DLR LK+IH +IDTS+L+ G R L
Sbjct: 280 VTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQG--RRFKL 337
Query: 199 KSIVSQLLHQSIQSGT---HDSFEDARACIDLILWKL 232
+ +L + IQ HD EDAR ++L+ + L
Sbjct: 338 TFLAKVILGKDIQCPNKLGHDGIEDARTALELVQYFL 374
>sp|Q5B367|REXO3_EMENI RNA exonuclease 3 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rex3 PE=3 SV=2
Length = 638
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 30/177 (16%)
Query: 82 ALDTEMVYTVHGLEVARVTVVN-VDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN-P 139
D EM YT G+E+ R+T V+ +G+ + + LV+P E++D N+++SG+ + + P
Sbjct: 409 CFDCEMGYTTLGMELIRLTAVSWPEGKKVLDVLVRPLGEVLDLNSRFSGVFPEHYTNALP 468
Query: 140 YKTLKD---------------------VQNDLMGFVSKDSIIVGHGLENDLRALKLIHSN 178
Y T + L ++ + ++GH ++NDL A ++IH
Sbjct: 469 YSTAPTKSSAPSSSSPSQLQLVSSPAAARTLLFNLLTPSTPLIGHAIDNDLNACRIIHPT 528
Query: 179 IIDTSVLFPH-SFGLPYRRSLKSIVSQLLHQSIQSG------THDSFEDARACIDLI 228
+IDT++L+PH GLPYR SL+++ + L + IQ+G HDS EDA A DL+
Sbjct: 529 VIDTAILYPHPGGGLPYRMSLRTLAKKHLDREIQTGGASGKQGHDSVEDALATGDLV 585
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 28/242 (11%)
Query: 10 KRLKAKSLTSMSVWERKSLFRK-----LPPRTGFNPVCTS-GLRISALDHVGGINGPLEG 63
KR K +S RK+L ++ +PP G +P+ T G + D G P G
Sbjct: 28 KRHKRRSRQHQRFMARKALLQEQGLLSMPPEPGSSPLPTPFGAVTATEDASSGKQCPRAG 87
Query: 64 Y------VKTKPRKSPPPNGYGVYALDTEMVYT-VHGL--EVARVTVVNVDGRLIYNTLV 114
+ P K+ P A+D EMV T G E+AR ++V+ G ++Y+ +
Sbjct: 88 SGGAPCSRRPAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYI 147
Query: 115 KPDCEIIDYNTKYSGISAKDFIRN-PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALK 173
+P+ I+DY T++SGI+ + + P++ Q +++ + K ++VGH L ND +ALK
Sbjct: 148 RPEMPIVDYRTRWSGITRQHMCKAIPFQV---AQKEILKLL-KGKVVVGHALHNDFQALK 203
Query: 174 LIH--SNIIDTS----VLFPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACI 225
+H S DT+ L S + R SLK + QLLH+ IQ G H S EDA +
Sbjct: 204 YVHPRSQTRDTTYVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAM 263
Query: 226 DL 227
+L
Sbjct: 264 EL 265
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 62 EGYVKTK-PRKSPPPNGYGVYALDTEMVYTVHGLE-VARVTVVNVDGRLIYNTLVKPDCE 119
E +V+T +K P + A+D EMV G E V RV V+ D ++I + VKP+
Sbjct: 123 EDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQP 182
Query: 120 IIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNI 179
++DY T +G++A+D + + D+Q L+ F+S+D+I+VG L +DL+ LK+ H+ +
Sbjct: 183 VVDYRTFITGLTAQDLEKATISVV-DIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARV 241
Query: 180 IDTSVLFPHSFG-----LPYRR-SLKSIVSQLLHQSIQSG--THDSFEDARACIDLIL 229
IDTS++F +++ L +R SL + +L +Q H+ DA A + L+L
Sbjct: 242 IDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVL 299
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 89.0 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 82 ALDTEMVYTVHGLE-VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPY 140
++D EMV G + + RV V+ D +++ + VKPD +IDY T +G++A+D R
Sbjct: 147 SIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERATL 206
Query: 141 KTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRR-SLK 199
++ D+Q L F+S +I+VGHGL NDL+ L++ H+ +IDTS +F +R SL
Sbjct: 207 -SVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSLN 265
Query: 200 SIVSQLLHQSIQ--SGTHDSFEDARACIDLIL 229
++ +L Q ++ H+ DA A + L+L
Sbjct: 266 NLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVL 297
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 79 GVYALDTEMVYTVHGLE-VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR 137
+ A+D EMV G E + RV VV+ D ++I + VKP+ ++DY T +GI+A+D I
Sbjct: 139 NMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAED-IE 197
Query: 138 NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRR- 196
N ++ D+Q L F+S +I+VGH L DL LK+ H +IDT+++F + RR
Sbjct: 198 NASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRP 257
Query: 197 SLKSIVSQLLHQSI-QSGT-HDSFEDARACIDLIL 229
SL ++ +L + ++G HD DA A + L L
Sbjct: 258 SLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLAL 292
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 18/175 (10%)
Query: 66 KTKPRKSPPPNGYGVYALDTEMVYT-VHGL--EVARVTVVNVDGRLIYNTLVKPDCEIID 122
K+ PR++P P A+D EMV T G E+AR +VV+ G ++Y+ ++P+ I+D
Sbjct: 95 KSVPREAPRPGPIKCVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVD 154
Query: 123 YNTKYSGISAKDFIRN-PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNI 179
Y T++SGI+ + + P++ Q +++ + K ++VGH L ND +ALK +H S
Sbjct: 155 YRTRWSGITRQHMHKAIPFQV---AQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQT 210
Query: 180 IDTSVLFPHSFGLP-----YRRSLKSIVSQLLHQSIQSG--THDSFEDARACIDL 227
DT+ + P+ P R SLK + LLH+ IQ G H S EDA ++L
Sbjct: 211 RDTTYV-PNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 16/160 (10%)
Query: 80 VYALDTEMVYTV---HGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI 136
+ A+D EMV T H +AR ++VN DG ++Y+ + P C I+DY T++SGI + +
Sbjct: 175 MVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 234
Query: 137 R-NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTS--VLFPHSFG 191
P+K +N ++ ++ I+VGH + ND +AL+ IH + DTS L
Sbjct: 235 NATPFKI---ARNQILKILA-GKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKAD 290
Query: 192 LPYRR--SLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
P SLKS+ +LL++ IQ+G H S EDA+A ++L
Sbjct: 291 CPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 93/177 (52%), Gaps = 20/177 (11%)
Query: 76 NGYGVY-ALDTEMVYTVHGLE-----VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSG 129
N G Y A+D E V G E +ARV++VN G ++ + VKP + D+ T SG
Sbjct: 90 NKIGKYIAMDCEFVGV--GPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSG 147
Query: 130 ISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTSVLFP 187
I+ D ++N + K Q L + KD I+VGH +++DL AL L H S +IDT+ P
Sbjct: 148 ITP-DHMKNAV-SFKQAQQQLSDIL-KDKILVGHAVKHDLEALMLSHPKSKVIDTARHLP 204
Query: 188 HSFGLPYRR----SLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRYNH 240
F Y + SLK + ++L+ IQSG H S EDARA + LI DF H
Sbjct: 205 --FRQKYAKGKSPSLKKLAKEILNMDIQSGQHSSVEDARATM-LIYKSAKQDFDKEH 258
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 18/172 (10%)
Query: 69 PRKSPPPNGYGVYALDTEMVYT-VHGL--EVARVTVVNVDGRLIYNTLVKPDCEIIDYNT 125
PR++P A+D EMV T G E+AR +VV+ G ++Y+ ++P+ I+DY T
Sbjct: 94 PREAPSSGPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRT 153
Query: 126 KYSGISAKDFIRN-PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDT 182
++SGI+ + + P++ Q +++ + K ++VGH L ND +ALK +H S I DT
Sbjct: 154 RWSGITRQHMHKAIPFQV---AQKEILKLL-KGKVVVGHALHNDFQALKYVHPGSQIRDT 209
Query: 183 SVLFPHSFGLP-----YRRSLKSIVSQLLHQSIQSG--THDSFEDARACIDL 227
+ + P+ P R SLK + LLH+ IQ G H S EDA ++L
Sbjct: 210 TYV-PNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 10 KRLKAKSLTSMSVWERKSLFRK-----LPPRTGFNPVCTS-GLRISALDHVGGI------ 57
KR K +S RK+L ++ +PP G +P+ T G + G
Sbjct: 28 KRHKRRSRQHQRFMARKALLQEQGLLSMPPEPGSSPLPTPFGAATATEAASSGKQCLRAG 87
Query: 58 NGPLEGYVKTKPRKSPPPNGYGVYALDTEMVYT-VHGL--EVARVTVVNVDGRLIYNTLV 114
+G + P K+ P A+D EMV T G E+AR ++V+ G ++Y+ +
Sbjct: 88 SGSAPCSRRPAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYI 147
Query: 115 KPDCEIIDYNTKYSGISAKDFIRN-PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALK 173
+P+ I DY T++SGI+ + + P++ Q +++ + K ++VGH L ND +ALK
Sbjct: 148 RPEMPIADYRTRWSGITRQHMRKAVPFQV---AQKEILKLL-KGKVVVGHALHNDFQALK 203
Query: 174 LIH--SNIIDTSVLFPHSFGLP-----YRRSLKSIVSQLLHQSIQSGT--HDSFEDARAC 224
+H S DT+ + P+ P R SLK + QLLH+ IQ G H S EDA
Sbjct: 204 YVHPRSQTRDTTYV-PNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTA 262
Query: 225 IDL 227
++L
Sbjct: 263 MEL 265
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 80 VYALDTEMVYTV---HGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI 136
+ A+D EMV T H +AR ++VN +G ++Y+ + P C I+DY T++SGI + +
Sbjct: 179 MVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 238
Query: 137 R-NPYKTLK-DVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVLFP--HSF 190
P+K + + L G I+VGH + ND +AL+ H + DTS + P
Sbjct: 239 NATPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKA 293
Query: 191 GLPYRR--SLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
P SLK + +LL++ IQ G H S EDA+A ++L
Sbjct: 294 DCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 24/164 (14%)
Query: 80 VYALDTEMVYTVHGLEV---ARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI 136
+ A+D EMV T V AR ++VN +G ++Y+ ++P C I+DY T++SGI +
Sbjct: 195 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHMV 254
Query: 137 R-NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVL-------- 185
P+KT ++ ++ +S ++VGH + ND +AL+ H + DTS +
Sbjct: 255 NATPFKT---ARSQILKILS-GKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKAD 310
Query: 186 FPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
P + L SLK + +LL + IQ+G H S EDA+A ++L
Sbjct: 311 CPENVTL----SLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 75 PNGYGVYALDTEMVYTV-HGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGIS 131
P Y A+D EMV G E +ARV++VN G IY+ V+P ++ DY T SG+
Sbjct: 132 PGNY--LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVR 189
Query: 132 AKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVLFP-H 188
KD P + VQ ++ + K ++VGH ++NDL+AL L H ++ DT+ P
Sbjct: 190 PKDLKGAP--SFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLR 246
Query: 189 SFGLPYRRSLKSIVSQLLHQSIQ--SGTHDSFEDARACI 225
SLK + +L IQ +H S EDARA +
Sbjct: 247 DLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATM 285
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 82 ALDTEMVYTV---HGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKD--FI 136
A+D EMV H +ARV++V+ G IY++ VKP ++ ++ T SGIS K F
Sbjct: 135 AIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRFA 194
Query: 137 RNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTSVLFP-HSFGLP 193
R+ ++VQ ++ + + I+VGH L++DL AL L H +I DT+ +
Sbjct: 195 RD----FEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANG 249
Query: 194 YRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRYNH 240
+ SL+ + QLL IQ G H S EDARA + L+ K S F +H
Sbjct: 250 RKPSLRVLAQQLLGVEIQGGEHSSIEDARATM-LLFRKHKSAFDVDH 295
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 17/163 (10%)
Query: 74 PPNGYGVY-ALDTEMVYTV----HGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYS 128
P G Y A+D EMV + +ARV++VN +G +Y++ V+P I D+ T S
Sbjct: 109 PTAEIGKYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVS 168
Query: 129 GISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTSVLF 186
GIS K ++L+ VQ D+ + I+VGH + NDL AL L H +I DTS
Sbjct: 169 GISPKHMAE--ARSLEQVQKDVAEILD-GRILVGHAVSNDLDALLLGHPKRDIRDTSKHP 225
Query: 187 PH----SFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACI 225
P+ G P LK + S+ L +IQ G H S EDA+A +
Sbjct: 226 PYRKIAGGGSPR---LKILASEFLGLNIQDGAHSSVEDAKATM 265
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
A+D EMV + G E +ARV++VN+ G+ +Y+ V+P + DY T SGI D I+N
Sbjct: 230 AMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDD-IKN 288
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSN--IIDTSVLFPHSFGLPY-R 195
+ KDVQ ++ + + +VGH + NDL+ L L H I DT P + R
Sbjct: 289 -GEAFKDVQAEVAEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGR 346
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
SLK + ++L+ +Q+G H S +DA+A + L
Sbjct: 347 PSLKLLCEKILNVKVQTGEHCSVQDAQAAMRL 378
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR- 137
A+D EMV + G E +ARV++VN+ G+ +Y+ VKP + DY T SGI +D +
Sbjct: 236 AMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKKG 295
Query: 138 NPYKTL-KDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSN--IIDTSVLFPHSFGLPY 194
P+K + K+V L G +VGH + NDL+ L L H I DT P +
Sbjct: 296 EPFKVVQKEVSEILRG-----RTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKS 350
Query: 195 -RRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLIL-----WKLLSDFRYN 239
R SLK + ++L+ +Q+G H S +DA+A + L W++ +Y
Sbjct: 351 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIKAKYT 401
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 82 ALDTEMVYTVHGLEV-ARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPY 140
A+D EMV + V ARV++VN G ++Y+T V+P ++ D+ T SG+ K F
Sbjct: 95 AMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGV--KSFHMRDA 152
Query: 141 KTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSN--IIDTSVLFPHSFGLPYRRS- 197
+ + VQ ++ + + ++VGH + NDL+ L L H I DTS F L R+
Sbjct: 153 PSFEKVQAEVAKILD-NRVLVGHAVHNDLKVLLLSHPRRMIRDTS-RFSGYRKLAKGRTP 210
Query: 198 -LKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
LK + +L + IQSG H S +DA+A ++L
Sbjct: 211 GLKKLAEVILGRDIQSGQHSSVQDAQATMEL 241
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
A+D EMV +G+E +ARV++VN G +I +T V+P + DY T SG+ D +
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVLFP-HSFGLPYR 195
P D N + + D I++GH ++NDL+ L L H + DT P R
Sbjct: 194 PQ---FDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKR 250
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
LK + LL IQ+G H S DAR + L
Sbjct: 251 PGLKKLSELLLGVQIQTGAHSSVVDARVAMAL 282
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
A+D EMV +G+E +ARV++VN G +I +T V+P + DY T SG+ D +
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVLFP-HSFGLPYR 195
P D N + + D I++GH ++NDL+ L L H + DT P R
Sbjct: 194 PQ---FDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKR 250
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
LK + LL IQ+G H S DAR + L
Sbjct: 251 PGLKKLSELLLGVQIQTGAHSSVVDARVAMAL 282
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 19/161 (11%)
Query: 80 VYALDTEMV----YTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDF 135
V A+D EMV + GL AR ++VNV G ++Y+ ++P+ EI DY T+ SG++ +
Sbjct: 7 VVAMDCEMVGLGPHRESGL--ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 136 I-RNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHS--NIIDTSV--LFPHSF 190
+ P+ + L+ K ++VGH L++D +ALK S I DTS L
Sbjct: 65 VGATPFAVARLEILQLL----KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREA 120
Query: 191 GLPY--RRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
L + R SL+ + +LLH+SIQ+ H S EDARA ++L
Sbjct: 121 KLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 19/170 (11%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
A+D E V G E +AR+++VN G ++ + VKP +++++ T SGI + ++N
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKP-EHMKN 181
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRR-- 196
T K+ Q + + I+VGH L++DL AL L H S+L S LP+R+
Sbjct: 182 AI-TFKEAQKKTADIL-EGRILVGHALKHDLEALMLSHPK----SLLRDTSRHLPFRKLY 235
Query: 197 ------SLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRYNH 240
SLK + ++L SIQ G H S EDARA + L+ K ++F H
Sbjct: 236 AKGKTPSLKKLTREVLKISIQEGEHSSVEDARATM-LLYKKEKTEFEKIH 284
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Query: 80 VYALDTEMVYTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI- 136
V A+D EMV E +AR ++VNV G ++Y+ ++P+ EI DY T+ SG++ + +
Sbjct: 7 VVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMVG 66
Query: 137 RNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALK--LIHSNIIDTS--VLFPHSFGL 192
P+ + L+ K ++VGH L++D +ALK + I DTS +L L
Sbjct: 67 ATPFAVARLEILQLL----KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKL 122
Query: 193 PY--RRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
+ R SL+ + +LLH+SIQ+ H S EDA+A ++L
Sbjct: 123 DHCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMEL 161
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 70 RKSPPPNGYGVY-ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNT 125
RK P G Y A+D E V G E +ARV++VN G +++ VKP + D+ T
Sbjct: 92 RKKEP----GKYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRT 147
Query: 126 KYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTS 183
SG++ K N + ++ QN+ + + I+VGH + +DL AL L H S I DTS
Sbjct: 148 WVSGVTPKHM--NEAISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTS 204
Query: 184 VLFP-HSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLI 228
P S + SLK + S L IQ H S EDARA + L
Sbjct: 205 QYKPFRSISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLF 250
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 24/164 (14%)
Query: 80 VYALDTEMVYTVHGLEV---ARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFI 136
+ A+D EMV T V AR ++VN +G ++Y+ V P C I++Y T++SGI +
Sbjct: 194 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMV 253
Query: 137 R-NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIHSNII--DTSVL-------- 185
P+KT ++ ++ +S +++GH + ND +AL+ H + DTS +
Sbjct: 254 NATPFKT---ARSQILKILS-GKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKAD 309
Query: 186 FPHSFGLPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDL 227
P + L SLK + +LL + IQ G H S EDA+A ++L
Sbjct: 310 CPENVTL----SLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRN 138
ALD EMV G E ARV++VN G+ +Y+ VKP + DY T SGI ++ +
Sbjct: 245 ALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 304
Query: 139 PYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTSVLFPHSFGLPY-R 195
+ L+ VQ ++ + K I+VGH L NDL+ L L H I DT P + R
Sbjct: 305 --EELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGR 361
Query: 196 RSLKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
SL+ + ++L +Q H S +DA+A + L
Sbjct: 362 PSLRLLSEKILGLQVQQAEHCSIQDAQAAMRL 393
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 96 VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVS 155
+ARV+VVN G+ + + V+P ++ D+ T SGI+ + TL++ Q + +
Sbjct: 132 LARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHMKQAV--TLEEAQRRVAAML- 188
Query: 156 KDSIIVGHGLENDLRALKLIH--SNIIDTSVLFP--HSFGLPYRRSLKSIVSQLLHQSIQ 211
K+ +++GHGL +DL L + H + I DTS+ P +G SLK + ++L+ IQ
Sbjct: 189 KNRVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPFREKYGAGKTPSLKKLAREVLNIDIQ 248
Query: 212 SGTHDSFEDARACIDLILWK 231
H S EDARA L+L+K
Sbjct: 249 GKEHSSVEDARAA--LLLYK 266
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 11/153 (7%)
Query: 82 ALDTEMV-YTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR- 137
ALD EMV G E ARV++VN G+ +Y+ VKP + DY T SGI ++ +
Sbjct: 255 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 314
Query: 138 NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKLIH--SNIIDTSVLFP-HSFGLPY 194
++ +K +++ K I+VGH L NDL+ L L H I DT P S
Sbjct: 315 EEFEVVKKEVAEML----KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSG 370
Query: 195 RRSLKSIVSQLLHQSIQSGTHDSFEDARACIDL 227
R SLK + ++L +Q H S +DA+A + L
Sbjct: 371 RPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRL 403
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 80 VYALDTEMV----YTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDF 135
V A+D EMV V GL AR ++VN+ G ++Y+ ++P+ EI DY T+ SG++ +
Sbjct: 7 VVAMDCEMVGLGPQRVSGL--ARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHM 64
Query: 136 IRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALK--LIHSNIIDTSV--LFPHSFG 191
+R + + +++ + K ++VGH L++D ALK + I DTS L H
Sbjct: 65 VRA--TPFGEARLEILQLL-KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAK 121
Query: 192 LPY--RRSLKSIVSQLLHQSIQ 211
L Y R SL+ + +LLH++IQ
Sbjct: 122 LQYYSRVSLRLLCKRLLHKNIQ 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,374,073
Number of Sequences: 539616
Number of extensions: 3646671
Number of successful extensions: 8946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 8723
Number of HSP's gapped (non-prelim): 121
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)