Query psy3897
Match_columns 240
No_of_seqs 221 out of 1488
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 2.8E-33 9.4E-38 233.9 14.6 155 77-234 4-168 (189)
2 2p1j_A POLIII, DNA polymerase 100.0 4.3E-30 1.5E-34 213.9 13.9 159 76-240 10-181 (186)
3 2gui_A DNA polymerase III epsi 100.0 1.1E-28 3.7E-33 206.1 13.7 152 78-234 9-184 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 99.9 6.6E-28 2.3E-32 202.5 11.3 159 77-238 9-198 (204)
5 3mxm_B Three prime repair exon 99.9 2.3E-27 8E-32 205.6 7.9 155 77-235 11-215 (242)
6 2xri_A ERI1 exoribonuclease 3; 99.9 1.2E-26 4.1E-31 198.6 10.8 174 59-238 14-217 (224)
7 1zbh_A 3'-5' exonuclease ERI1; 99.9 2.3E-26 7.9E-31 205.0 12.9 157 77-236 77-264 (299)
8 2f96_A Ribonuclease T; RNAse, 99.9 3.4E-26 1.2E-30 195.4 12.1 156 76-237 27-215 (224)
9 1y97_A Three prime repair exon 99.9 2.5E-26 8.4E-31 197.5 11.1 156 78-236 10-211 (238)
10 3u3y_B Three prime repair exon 99.9 2.6E-26 8.9E-31 205.8 10.1 156 77-236 11-216 (314)
11 2igi_A Oligoribonuclease; RNAs 99.9 2.5E-25 8.7E-30 183.5 14.4 145 77-235 4-177 (180)
12 3cg7_A CRN-4, cell death-relat 99.9 7.3E-26 2.5E-30 202.8 8.3 155 78-236 19-210 (308)
13 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 1.1E-25 3.9E-30 204.7 9.5 157 77-236 127-314 (349)
14 3v9w_A Ribonuclease T; DEDD nu 99.9 9.4E-25 3.2E-29 187.6 12.0 155 76-236 35-222 (235)
15 2gbz_A Oligoribonuclease; ORN, 99.9 1.9E-24 6.6E-29 181.0 12.0 143 77-236 8-182 (194)
16 3tr8_A Oligoribonuclease; tran 99.9 2.3E-23 8E-28 174.1 10.6 149 75-237 6-183 (186)
17 2qxf_A Exodeoxyribonuclease I; 99.9 2.8E-23 9.4E-28 196.0 11.7 155 77-234 8-200 (482)
18 4hec_A Putative uncharacterize 99.0 2E-09 6.9E-14 89.7 12.4 148 78-234 22-181 (190)
19 2kfn_A Klenow fragment of DNA 98.8 5E-08 1.7E-12 94.3 14.3 139 79-234 27-192 (605)
20 1x9m_A DNA polymerase; DNA plo 98.5 6.3E-08 2.2E-12 95.0 4.7 129 80-234 1-182 (698)
21 4gmj_B CCR4-NOT transcription 98.1 5.2E-05 1.8E-09 66.7 12.9 153 77-233 33-243 (285)
22 3saf_A Exosome component 10; e 97.9 7.4E-05 2.5E-09 69.3 11.2 128 77-234 128-276 (428)
23 4dfk_A DNA polymerase I, therm 97.8 1.8E-05 6E-10 75.6 5.8 116 79-234 11-127 (540)
24 1vk0_A Hypothetical protein; h 97.7 8.4E-05 2.9E-09 62.4 7.0 84 150-233 100-205 (206)
25 1qht_A Protein (DNA polymerase 97.6 0.0004 1.4E-08 68.9 12.6 137 76-230 133-325 (775)
26 2e6m_A Werner syndrome ATP-dep 97.4 0.00065 2.2E-08 56.2 8.9 85 149-234 87-194 (208)
27 2d5r_A CCR4-NOT transcription 97.3 0.0048 1.6E-07 53.2 14.0 154 77-234 23-234 (252)
28 1noy_A Protein (DNA polymerase 97.3 0.0027 9.3E-08 57.8 13.0 149 77-230 105-334 (388)
29 2p51_A SPCC18.06C protein; DED 97.3 0.0063 2.2E-07 54.4 14.2 155 76-234 43-255 (333)
30 1yt3_A Ribonuclease D, RNAse D 97.3 0.0015 5.2E-08 59.1 10.4 83 150-234 66-169 (375)
31 1uoc_A POP2; hydrolase, DEDD n 97.1 0.0074 2.5E-07 53.0 12.9 157 76-234 36-264 (289)
32 2hbj_A Exosome complex exonucl 97.0 0.0021 7.2E-08 59.1 9.2 83 150-234 151-253 (410)
33 1s5j_A DNA polymerase I; repli 96.9 0.0074 2.5E-07 60.4 12.7 146 76-228 188-386 (847)
34 3k59_A POL II, DNA polymerase 96.8 0.011 3.6E-07 58.8 12.5 138 75-230 150-348 (786)
35 3pv8_A DNA polymerase I; DNA p 96.8 0.0015 5.3E-08 62.8 5.8 126 79-233 30-179 (592)
36 2a1r_A Poly(A)-specific ribonu 96.7 0.0058 2E-07 56.5 9.2 88 143-234 270-396 (430)
37 3cym_A Uncharacterized protein 96.6 0.018 6.1E-07 53.4 11.4 83 149-234 86-186 (440)
38 3qex_A DNA polymerase, GP43; d 96.5 0.018 6E-07 58.0 11.7 151 77-230 107-337 (903)
39 3iay_A DNA polymerase delta ca 96.5 0.013 4.4E-07 59.1 10.5 85 77-173 248-346 (919)
40 3d45_A Poly(A)-specific ribonu 96.4 0.0053 1.8E-07 58.0 6.8 78 155-233 274-390 (507)
41 2gv9_A DNA polymerase; polymer 95.5 0.16 5.3E-06 52.7 13.6 153 76-231 318-550 (1193)
42 2py5_A DNA polymerase; protein 88.5 1.4 4.8E-05 42.0 8.4 68 77-174 5-72 (575)
43 3q7c_A Nucleoprotein; deddh ex 84.1 1.2 4E-05 37.2 4.6 133 78-223 57-210 (243)
44 3mwp_A Nucleoprotein; structur 76.4 2.7 9.1E-05 38.8 4.6 133 78-223 391-544 (577)
45 3ikm_A DNA polymerase subunit 64.2 0.75 2.6E-05 46.9 -1.9 30 156-185 193-228 (1172)
46 2a1r_A Poly(A)-specific ribonu 32.3 23 0.0008 32.2 2.6 15 77-91 21-35 (430)
47 3d45_A Poly(A)-specific ribonu 28.6 29 0.00098 32.3 2.6 15 77-91 23-37 (507)
48 1bgx_T TAQ DNA polymerase; DNA 25.4 69 0.0023 31.8 4.8 76 148-233 340-418 (832)
49 3cwf_A Alkaline phosphatase sy 24.7 34 0.0012 24.5 1.9 16 97-112 49-64 (122)
50 1m33_A BIOH protein; alpha-bet 23.9 60 0.0021 25.5 3.5 29 143-171 61-89 (258)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=2.8e-33 Score=233.94 Aligned_cols=155 Identities=34% Similarity=0.465 Sum_probs=133.9
Q ss_pred CCcEEEEEEeecCCCCC--ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhh
Q psy3897 77 GYGVYALDTEMVYTVHG--LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFV 154 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g--~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i 154 (240)
..++|+|||||||+++. .+|++|++|+.+|+++|++||+|..+|+++++++||||++++.++|+ +++|+++|.+|+
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~--~~~v~~~~~~~l 81 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATP--FAVARLEILQLL 81 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEE--HHHHHHHHHHHH
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCC--HHHHHHHHHHHH
Confidence 45799999999999865 47899999999999999999999999999999999999999999988 999999999999
Q ss_pred cCCcEEEEEchHHHHHHHhccCCC--eeeccccCcccC--CCC--CCccHHHHHHHHcCCCCCCC--CCChHHHHHHHHH
Q psy3897 155 SKDSIIVGHGLENDLRALKLIHSN--IIDTSVLFPHSF--GLP--YRRSLKSIVSQLLHQSIQSG--THDSFEDARACID 226 (240)
Q Consensus 155 ~~~~iLVGH~~~~Dl~~L~~~~~~--~iDT~~l~~~~~--~~~--~~~sL~~L~~~~L~~~iq~~--~H~A~eDA~at~~ 226 (240)
+ +.+|||||+.||+++|+..++. ++||+.+++... +.+ .+++|+.|++.+||++++.+ +|+|++||++|++
T Consensus 82 ~-~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~ 160 (189)
T 1wlj_A 82 K-GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATME 160 (189)
T ss_dssp T-TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHH
T ss_pred C-CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHH
Confidence 5 8999999999999999987764 899998754221 221 35799999986689888765 8999999999999
Q ss_pred HHHHHHhh
Q psy3897 227 LILWKLLS 234 (240)
Q Consensus 227 L~~~~l~~ 234 (240)
||.+++++
T Consensus 161 l~~~l~~~ 168 (189)
T 1wlj_A 161 LYQISQRI 168 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.97 E-value=4.3e-30 Score=213.87 Aligned_cols=159 Identities=27% Similarity=0.350 Sum_probs=132.4
Q ss_pred CCCcEEEEEEeecCCCCC-ccEEEEEEEEc-CCcEE--EEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHH
Q psy3897 76 NGYGVYALDTEMVYTVHG-LEVARVTVVNV-DGRLI--YNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLM 151 (240)
Q Consensus 76 ~~~~~valD~E~tg~~~g-~ei~~v~vv~~-~g~~~--~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~ 151 (240)
...++|+|||||||+++. .+|++|++|.. +|+++ |++||+|..+|+++++++||||++++.++++ +++|+++|.
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~--~~~v~~~~~ 87 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRS--IEEVLPEFL 87 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCB--HHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCC--HHHHHHHHH
Confidence 346899999999999875 58999999985 67766 9999999999999999999999999999988 999999999
Q ss_pred hhhcCCcEEEEEchHHHHHHHhcc---------CCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHH
Q psy3897 152 GFVSKDSIIVGHGLENDLRALKLI---------HSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDAR 222 (240)
Q Consensus 152 ~~i~~~~iLVGH~~~~Dl~~L~~~---------~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~ 222 (240)
+|++ +.+|||||+.||+.+|+.. +.+++||+.+++...+ ..+++|+.|++ ++|++... +|+|++||+
T Consensus 88 ~~l~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~-~~gi~~~~-~H~Al~Da~ 163 (186)
T 2p1j_A 88 GFLE-DSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK-LRSYSLDSVVE-KLGLGPFR-HHRALDDAR 163 (186)
T ss_dssp HHSS-SCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC-CSCCSHHHHHH-HTTCCSTT-CCHHHHHHH
T ss_pred HHHC-CCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhh-cCCCCHHHHHH-HcCCCCCC-CcCHHHHHH
Confidence 9995 8999999999999999851 4578999988765432 23579999997 58976654 799999999
Q ss_pred HHHHHHHHHHhhhhccCC
Q psy3897 223 ACIDLILWKLLSDFRYNH 240 (240)
Q Consensus 223 at~~L~~~~l~~~~~~~~ 240 (240)
+|++||.+++++.-+.||
T Consensus 164 ~t~~l~~~l~~~~~~~~~ 181 (186)
T 2p1j_A 164 VTAQVFLRFVEMMKKEGH 181 (186)
T ss_dssp HHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999888777665
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.96 E-value=1.1e-28 Score=206.08 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=128.1
Q ss_pred CcEEEEEEeecCCCC------CccEEEEEEEEc-CCcE---EEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHH
Q psy3897 78 YGVYALDTEMVYTVH------GLEVARVTVVNV-DGRL---IYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQ 147 (240)
Q Consensus 78 ~~~valD~E~tg~~~------g~ei~~v~vv~~-~g~~---~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~ 147 (240)
.++|+|||||||+++ +.+|++|++|.. +|.+ .|++||+|..+|+++++++||||++++.++|+ +++|+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~--~~~v~ 86 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPT--FAEVA 86 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCC--HHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCC--HHHHH
Confidence 479999999999987 368999999986 5554 39999999999999999999999999999988 99999
Q ss_pred HHHHhhhcCCcEEEEEchHHHHHHHhcc-----------C--CCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCC-C
Q psy3897 148 NDLMGFVSKDSIIVGHGLENDLRALKLI-----------H--SNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQS-G 213 (240)
Q Consensus 148 ~~l~~~i~~~~iLVGH~~~~Dl~~L~~~-----------~--~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~-~ 213 (240)
++|.+|++ +.+|||||+.||+.+|+.. + ..++||..+++...+ ..+++|+.|++ ++|++..+ .
T Consensus 87 ~~~~~~l~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p-~~~~~L~~l~~-~~gi~~~~~~ 163 (194)
T 2gui_A 87 DEFMDYIR-GAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCA-RYEIDNSKRT 163 (194)
T ss_dssp HHHHHHHT-TSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHH-HTTCCCTTCS
T ss_pred HHHHHHHC-CCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcC-CCCCCHHHHHH-HcCcCCCCCC
Confidence 99999995 8999999999999999851 1 368999877654321 12468999997 58977664 3
Q ss_pred CCChHHHHHHHHHHHHHHHhh
Q psy3897 214 THDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 214 ~H~A~eDA~at~~L~~~~l~~ 234 (240)
+|+|++||++|++||.+++++
T Consensus 164 ~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 164 LHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp SCCHHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHHHHHHHHHHHHHhc
Confidence 799999999999999877654
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=6.6e-28 Score=202.46 Aligned_cols=159 Identities=13% Similarity=0.193 Sum_probs=131.2
Q ss_pred CCcEEEEEEeecCCCC-----CccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccceecCCCCHHhhccCCCCCHH
Q psy3897 77 GYGVYALDTEMVYTVH-----GLEVARVTVVNV---DGRLI--YNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLK 144 (240)
Q Consensus 77 ~~~~valD~E~tg~~~-----g~ei~~v~vv~~---~g~~~--~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ 144 (240)
...+|+||+||||.++ ..+|++|++|.. +|+++ |++||+|.. +|+++++++||||+++++++|+ ++
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~--~~ 86 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT--FP 86 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC--HH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCC--HH
Confidence 3579999999999985 358999998764 67776 999999998 9999999999999999999988 99
Q ss_pred HHHHHHHhhhcCCc------EEEEEchHHHHH-HHhcc-------CC----CeeeccccCcccCCCC-CCccHHHHHHHH
Q psy3897 145 DVQNDLMGFVSKDS------IIVGHGLENDLR-ALKLI-------HS----NIIDTSVLFPHSFGLP-YRRSLKSIVSQL 205 (240)
Q Consensus 145 ev~~~l~~~i~~~~------iLVGH~~~~Dl~-~L~~~-------~~----~~iDT~~l~~~~~~~~-~~~sL~~L~~~~ 205 (240)
+|+.+|.+|+++.. ++||||+.||+. +|+.. .+ .++||..+++...+.+ ..++|..|++ +
T Consensus 87 ~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~-~ 165 (204)
T 1w0h_A 87 QVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-K 165 (204)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHH-H
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHH-H
Confidence 99999999996332 599999999996 99741 12 6899998887543321 2368999996 5
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcc
Q psy3897 206 LHQSIQSGTHDSFEDARACIDLILWKLLSDFRY 238 (240)
Q Consensus 206 L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~~~ 238 (240)
+|++.++.+|+|++||++|++||.+++++...+
T Consensus 166 ~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~ 198 (204)
T 1w0h_A 166 LGMDYDGRPHCGLDDSKNIARIAVRMLQDGCEL 198 (204)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCCCCccCcHHHHHHHHHHHHHHHHCCCee
Confidence 897776447999999999999999998876443
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.94 E-value=2.3e-27 Score=205.62 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=126.5
Q ss_pred CCcEEEEEEeecCCCCC-ccEEEEEEEEcC-C-------------------cE--EEEEEEcCCCcccccceecCCCCHH
Q psy3897 77 GYGVYALDTEMVYTVHG-LEVARVTVVNVD-G-------------------RL--IYNTLVKPDCEIIDYNTKYSGISAK 133 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g-~ei~~v~vv~~~-g-------------------~~--~~d~lVkP~~~I~~~~t~~~GIt~e 133 (240)
-.+||+||+||||+++. .+|++|++|..+ | ++ .|+++|+|..+|++.++++||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 35799999999999864 689999998852 2 22 5999999999999999999999999
Q ss_pred hhccC--CCCCHH-HHHHHHHhhhcCC----cEEEEEch-HHHHHHHhcc----------CC-CeeeccccCcccC----
Q psy3897 134 DFIRN--PYKTLK-DVQNDLMGFVSKD----SIIVGHGL-ENDLRALKLI----------HS-NIIDTSVLFPHSF---- 190 (240)
Q Consensus 134 dl~~a--~~~~~~-ev~~~l~~~i~~~----~iLVGH~~-~~Dl~~L~~~----------~~-~~iDT~~l~~~~~---- 190 (240)
++.++ |. ++ +|+++|.+|++ + .+|||||. .||+.+|+.. .+ .++||+.+++...
T Consensus 91 ~l~~~g~p~--~~~ev~~~~~~fl~-~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~ 167 (242)
T 3mxm_B 91 ELEVQGRQR--FDDNLAILLRAFLQ-RQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASS 167 (242)
T ss_dssp HHHHTTCCC--SCHHHHHHHHHHHH-TSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHC
T ss_pred HHHhcCCCc--hhHHHHHHHHHHHh-cCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcC
Confidence 99999 66 86 99999999996 6 89999995 9999999852 12 5799988765321
Q ss_pred ----CCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q psy3897 191 ----GLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSD 235 (240)
Q Consensus 191 ----~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~~ 235 (240)
+...+++|..|++.++|++... +|+|++||++|++||+++.++-
T Consensus 168 p~~~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 168 PSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp C------CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSHHHH
T ss_pred ccccCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHHHHH
Confidence 1123679999998789977654 7999999999999998766543
No 6
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=198.58 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=132.9
Q ss_pred CCcccccccCCCCCCCCCCCcEEEEEEeecCCCCC---ccEEEEEEEEcC---CcEE--EEEEEcCCC--cccccceecC
Q psy3897 59 GPLEGYVKTKPRKSPPPNGYGVYALDTEMVYTVHG---LEVARVTVVNVD---GRLI--YNTLVKPDC--EIIDYNTKYS 128 (240)
Q Consensus 59 ~~~~~fv~t~~~~~~~~~~~~~valD~E~tg~~~g---~ei~~v~vv~~~---g~~~--~d~lVkP~~--~I~~~~t~~~ 128 (240)
.....|.++.+.... .-..+|+||+||||+++. .+|++|++|..+ |+++ |++||+|.. +|+++++++|
T Consensus 14 ~~~~~y~~~~~~~~~--~~~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~lt 91 (224)
T 2xri_A 14 GTENLYFQSMSFPPQ--RYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELT 91 (224)
T ss_dssp ---CGGGTTTSSCCC--SCSEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHH
T ss_pred ccccccccCCCCCCC--CCCeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHh
Confidence 334457777643221 225799999999999875 389999998742 4555 999999987 8999999999
Q ss_pred CCCHHhhccCCCCCHHHHHHHHHhhhcCCcEEEEEch--------HHHHHH-Hhcc-------C----CCeeeccccCcc
Q psy3897 129 GISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGL--------ENDLRA-LKLI-------H----SNIIDTSVLFPH 188 (240)
Q Consensus 129 GIt~edl~~a~~~~~~ev~~~l~~~i~~~~iLVGH~~--------~~Dl~~-L~~~-------~----~~~iDT~~l~~~ 188 (240)
|||+++++++|+ +++|+++|.+|++ +.+|||||+ .||+.+ |+.. . ..++|+...+..
T Consensus 92 GIt~~~v~~a~~--~~~v~~~f~~~l~-~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~ 168 (224)
T 2xri_A 92 GIIQAMVDGQPS--LQQVLERVDEWMA-KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSF 168 (224)
T ss_dssp CCCHHHHTTCCC--HHHHHHHHHHHHH-HTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHH
T ss_pred CcCHHHHcCCCC--HHHHHHHHHHHHh-hcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHH
Confidence 999999999988 9999999999996 889999999 999997 7421 1 268995443322
Q ss_pred cCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcc
Q psy3897 189 SFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRY 238 (240)
Q Consensus 189 ~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~~~ 238 (240)
..+...+++|..|++ ++|++.++.+|+|++||++|++||.++++++..+
T Consensus 169 ~~~~~p~~~L~~l~~-~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~ 217 (224)
T 2xri_A 169 AMGCWPKNGLLDMNK-GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIF 217 (224)
T ss_dssp HHTSCCTTTHHHHHH-HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhccCCCCCHHHHHH-HcCCCCCCCCcChHHHHHHHHHHHHHHHHcCCEE
Confidence 111111368999997 6997765447999999999999999999877554
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=205.02 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=131.1
Q ss_pred CCcEEEEEEeecCCCC-----CccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccceecCCCCHHhhccCCCCCHH
Q psy3897 77 GYGVYALDTEMVYTVH-----GLEVARVTVVNV---DGRLI--YNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLK 144 (240)
Q Consensus 77 ~~~~valD~E~tg~~~-----g~ei~~v~vv~~---~g~~~--~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ 144 (240)
...+|+||+||||.+. ..+|++|++|.. +|+++ |++||+|.. +|+++++++||||+++++++++ +.
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~--~~ 154 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT--FP 154 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC--HH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCC--HH
Confidence 3579999999999963 358999999875 35666 999999998 9999999999999999999988 99
Q ss_pred HHHHHHHhhhcCC------cEEEEEchHHHHH-HHhcc-------CC----CeeeccccCcccCCCCC-CccHHHHHHHH
Q psy3897 145 DVQNDLMGFVSKD------SIIVGHGLENDLR-ALKLI-------HS----NIIDTSVLFPHSFGLPY-RRSLKSIVSQL 205 (240)
Q Consensus 145 ev~~~l~~~i~~~------~iLVGH~~~~Dl~-~L~~~-------~~----~~iDT~~l~~~~~~~~~-~~sL~~L~~~~ 205 (240)
+|+++|.+|+.+. .++||||+.||+. +|+.. .+ .++||..+|+...+.+. .++|..|++ +
T Consensus 155 evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~-~ 233 (299)
T 1zbh_A 155 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-K 233 (299)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHH-H
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHH-H
Confidence 9999999999643 4999999999999 99752 12 58999888876543331 368999997 5
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 206 LHQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 206 L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
+|++.++.+|+|++||++|++||.+++++..
T Consensus 234 ~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 234 LGMDYDGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 9977664479999999999999999887653
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.93 E-value=3.4e-26 Score=195.36 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=129.1
Q ss_pred CCCcEEEEEEeecCCCCC-ccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccceecCCCCHHh-hccCCCCCH
Q psy3897 76 NGYGVYALDTEMVYTVHG-LEVARVTVVNV----DGRL----IYNTLVKP--DCEIIDYNTKYSGISAKD-FIRNPYKTL 143 (240)
Q Consensus 76 ~~~~~valD~E~tg~~~g-~ei~~v~vv~~----~g~~----~~d~lVkP--~~~I~~~~t~~~GIt~ed-l~~a~~~~~ 143 (240)
...++|+||+||||+++. .+|++|++|.. +|++ .|++||+| ..+|+++++++||||+++ +.+++. +
T Consensus 27 ~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~--~ 104 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQ--E 104 (224)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBC--H
T ss_pred cCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC--H
Confidence 456799999999999876 58999999975 5764 39999999 579999999999999985 888888 9
Q ss_pred HHHHHHHHhhhc--------CCcEEEEEchHHHHHHHhcc------------CCCeeeccccCcccCCCCCCccHHHHHH
Q psy3897 144 KDVQNDLMGFVS--------KDSIIVGHGLENDLRALKLI------------HSNIIDTSVLFPHSFGLPYRRSLKSIVS 203 (240)
Q Consensus 144 ~ev~~~l~~~i~--------~~~iLVGH~~~~Dl~~L~~~------------~~~~iDT~~l~~~~~~~~~~~sL~~L~~ 203 (240)
.+|+.+|.+++. ++.+|||||+.||+.+|+.. ...++||..+++...+ +++|..|++
T Consensus 105 ~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~ 181 (224)
T 2f96_A 105 EAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLAKACQ 181 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHHHHHH
Confidence 999999999884 47899999999999999741 1257999988775432 358999997
Q ss_pred HHcCCCCCC-CCCChHHHHHHHHHHHHHHHhhhhc
Q psy3897 204 QLLHQSIQS-GTHDSFEDARACIDLILWKLLSDFR 237 (240)
Q Consensus 204 ~~L~~~iq~-~~H~A~eDA~at~~L~~~~l~~~~~ 237 (240)
++|+++.. .+|+|++||++|++||.+++++-..
T Consensus 182 -~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 182 -AAGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp -HTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 58977643 4899999999999999988876433
No 9
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.93 E-value=2.5e-26 Score=197.48 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=123.4
Q ss_pred CcEEEEEEeecCCCCC-ccEEEEEEEEcCC-----------------cE--EEEEEEcCCCcccccceecCCCCHHhhc-
Q psy3897 78 YGVYALDTEMVYTVHG-LEVARVTVVNVDG-----------------RL--IYNTLVKPDCEIIDYNTKYSGISAKDFI- 136 (240)
Q Consensus 78 ~~~valD~E~tg~~~g-~ei~~v~vv~~~g-----------------~~--~~d~lVkP~~~I~~~~t~~~GIt~edl~- 136 (240)
.++|+||+||||+++. .+|++|++|..++ ++ .|++||+|..+|+++++++||||++++.
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~ 89 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHhh
Confidence 5799999999999864 6899999987532 43 4999999999999999999999999994
Q ss_pred -cCCCCCH-HHHHHHHHhhhcC---CcEEEEEch-HHHHHHHhcc----------CCCeeeccccCcccC---------C
Q psy3897 137 -RNPYKTL-KDVQNDLMGFVSK---DSIIVGHGL-ENDLRALKLI----------HSNIIDTSVLFPHSF---------G 191 (240)
Q Consensus 137 -~a~~~~~-~ev~~~l~~~i~~---~~iLVGH~~-~~Dl~~L~~~----------~~~~iDT~~l~~~~~---------~ 191 (240)
++|. + +++.+.|.+|++. +.+|||||+ .||+.+|+.. +..++||..+++... +
T Consensus 90 ~~~p~--f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p 167 (238)
T 1y97_A 90 CRKAG--FDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRAR 167 (238)
T ss_dssp TTCCC--SCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------
T ss_pred cCCCc--cHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCC
Confidence 6677 7 5899999999963 289999999 9999999852 135899988765442 1
Q ss_pred CCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 192 LPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 192 ~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
...+++|..|++.++|++... +|+|++||++|++||.++.++.+
T Consensus 168 ~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 168 GRQGYSLGSLFHRYFRAEPSA-AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp ---CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCHHHHHHHHhCCCCcc-CccHHHHHHHHHHHHHHHHHHHH
Confidence 113579999997579966553 79999999999999998776543
No 10
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.93 E-value=2.6e-26 Score=205.83 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=126.7
Q ss_pred CCcEEEEEEeecCCCCC-ccEEEEEEEEcC-C-------------------c--EEEEEEEcCCCcccccceecCCCCHH
Q psy3897 77 GYGVYALDTEMVYTVHG-LEVARVTVVNVD-G-------------------R--LIYNTLVKPDCEIIDYNTKYSGISAK 133 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g-~ei~~v~vv~~~-g-------------------~--~~~d~lVkP~~~I~~~~t~~~GIt~e 133 (240)
-.+||+||+||||++.. .+|++|++|..+ + + ..|+++|+|..+|++.++++||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 45799999999999854 689999998853 2 1 35999999999999999999999999
Q ss_pred hhccC--CCCCH-HHHHHHHHhhhcCC----cEEEEEc-hHHHHHHHhcc------C-----CCeeeccccCc----cc-
Q psy3897 134 DFIRN--PYKTL-KDVQNDLMGFVSKD----SIIVGHG-LENDLRALKLI------H-----SNIIDTSVLFP----HS- 189 (240)
Q Consensus 134 dl~~a--~~~~~-~ev~~~l~~~i~~~----~iLVGH~-~~~Dl~~L~~~------~-----~~~iDT~~l~~----~~- 189 (240)
+++++ |. | ++|.++|.+|++ + .+||||| +.||+.||+.. . ..++||..+++ ..
T Consensus 91 ~l~~aG~P~--f~~ev~~~l~~fL~-~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~ 167 (314)
T 3u3y_B 91 ELEVQGRQR--FDDNLAILLRAFLQ-RQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASS 167 (314)
T ss_dssp HHHHTTCCB--SCHHHHHHHHHHHH-TSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-
T ss_pred HHHhCCCCC--cHHHHHHHHHHHHh-cCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhC
Confidence 99999 66 8 799999999996 6 8999999 99999999852 1 13789987443 11
Q ss_pred ---CCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 190 ---FGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 190 ---~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
.+...+++|..|++.|+|++... .|+|++||++|++||+++.++.+
T Consensus 168 P~~~~~~~~~~L~~L~~~l~gi~~~~-aHrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 168 PSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp ------CCCCSHHHHHHHHHSSCCSC-SSSHHHHHHHHHHHHHSSHHHHH
T ss_pred ccccccCCCCCHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 11123679999998669977653 89999999999999997766543
No 11
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.93 E-value=2.5e-25 Score=183.52 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=111.3
Q ss_pred CCcEEEEEEeecCCCCC-ccEEEEEEEEc--CCcEE---EEEEEcCCCccccc----c---eecCCCCHHhhccCCCCCH
Q psy3897 77 GYGVYALDTEMVYTVHG-LEVARVTVVNV--DGRLI---YNTLVKPDCEIIDY----N---TKYSGISAKDFIRNPYKTL 143 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g-~ei~~v~vv~~--~g~~~---~d~lVkP~~~I~~~----~---t~~~GIt~edl~~a~~~~~ 143 (240)
..++|+|||||||+++. .+|++|++|.. +|.++ |++||+|..+|+++ + +.+||||++++.++|+ +
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~--~ 81 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG--D 81 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC--H
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC--H
Confidence 34799999999999876 58999998864 45554 99999999887664 3 5679999999999988 9
Q ss_pred HHHHHHHHhhhcC-----CcEEEEEchHHHHHHHhcc--------CCCeee--ccc-cCcccCCCCCCccHHHHHHHHcC
Q psy3897 144 KDVQNDLMGFVSK-----DSIIVGHGLENDLRALKLI--------HSNIID--TSV-LFPHSFGLPYRRSLKSIVSQLLH 207 (240)
Q Consensus 144 ~ev~~~l~~~i~~-----~~iLVGH~~~~Dl~~L~~~--------~~~~iD--T~~-l~~~~~~~~~~~sL~~L~~~~L~ 207 (240)
++|+++|.+|+++ ..+|||||+.||+.+|+.. +.+++| |.. +.+... + .+ + .|
T Consensus 82 ~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~--p---~~---~---~~ 150 (180)
T 2igi_A 82 REAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWK--P---EI---L---DG 150 (180)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHC--G---GG---G---GG
T ss_pred HHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhC--h---Hh---h---hC
Confidence 9999999999964 3799999999999999863 345677 442 322211 0 11 1 13
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhhh
Q psy3897 208 QSIQSGTHDSFEDARACIDLILWKLLSD 235 (240)
Q Consensus 208 ~~iq~~~H~A~eDA~at~~L~~~~l~~~ 235 (240)
... .++|+|++||++|++||.++.++-
T Consensus 151 i~~-~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 151 FTK-QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp SCC-CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC-cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 322 238999999999999999887764
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.92 E-value=7.3e-26 Score=202.77 Aligned_cols=155 Identities=14% Similarity=0.192 Sum_probs=127.8
Q ss_pred CcEEEEEEeecCCCCC-c---cEEEEEEEEc---CCcE----EEEEEEcCCCc--ccccceecCCCCHHhhccCCCCCHH
Q psy3897 78 YGVYALDTEMVYTVHG-L---EVARVTVVNV---DGRL----IYNTLVKPDCE--IIDYNTKYSGISAKDFIRNPYKTLK 144 (240)
Q Consensus 78 ~~~valD~E~tg~~~g-~---ei~~v~vv~~---~g~~----~~d~lVkP~~~--I~~~~t~~~GIt~edl~~a~~~~~~ 144 (240)
.++|+||+||||.+++ . +|++|++|.. +|++ .|++||+|... |+++++++||||+++|.++|+ ++
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~--~~ 96 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADT--FD 96 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCB--HH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCC--HH
Confidence 4799999999999876 3 8999999864 5665 49999999984 999999999999999999988 99
Q ss_pred HHHHHHHhhhcCCcEEEEEch------HHHH-HHHhcc-------C----CCeeeccccCcccCCC------CCCccHHH
Q psy3897 145 DVQNDLMGFVSKDSIIVGHGL------ENDL-RALKLI-------H----SNIIDTSVLFPHSFGL------PYRRSLKS 200 (240)
Q Consensus 145 ev~~~l~~~i~~~~iLVGH~~------~~Dl-~~L~~~-------~----~~~iDT~~l~~~~~~~------~~~~sL~~ 200 (240)
+|+.+|.+|+. +.++||||+ .||+ .+|+.. . .+++||..+++...+. ..+++|..
T Consensus 97 evl~~f~~~l~-~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~ 175 (308)
T 3cg7_A 97 VVYEQFQQWLI-TLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHH-HHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHH
T ss_pred HHHHHHHHHHH-hCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHH
Confidence 99999999996 788899998 9999 688641 1 2589999877543111 11468999
Q ss_pred HHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 201 IVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 201 L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
|++ ++|++++...|+|++||++|++||.++++++.
T Consensus 176 l~~-~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~ 210 (308)
T 3cg7_A 176 MNE-YYDLPTIGRAHDAMDDCLNIATILQRMINMGA 210 (308)
T ss_dssp HHH-HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 996 69987765469999999999999999887654
No 13
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=204.69 Aligned_cols=157 Identities=13% Similarity=0.191 Sum_probs=130.9
Q ss_pred CCcEEEEEEeecCCCC-----CccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccceecCCCCHHhhccCCCCCHH
Q psy3897 77 GYGVYALDTEMVYTVH-----GLEVARVTVVNV---DGRLI--YNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLK 144 (240)
Q Consensus 77 ~~~~valD~E~tg~~~-----g~ei~~v~vv~~---~g~~~--~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ 144 (240)
...+|+||+||||++. ..+|++|++|.. +|+++ |++||+|.. +|+++++++||||+++|.+++. +.
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~--~~ 204 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT--FP 204 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEE--HH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCC--HH
Confidence 3578999999999852 358999999875 45665 999999998 9999999999999999999988 99
Q ss_pred HHHHHHHhhhcCC------cEEEEEchHHHHH-HHhcc-------CC----CeeeccccCcccCCCCC-CccHHHHHHHH
Q psy3897 145 DVQNDLMGFVSKD------SIIVGHGLENDLR-ALKLI-------HS----NIIDTSVLFPHSFGLPY-RRSLKSIVSQL 205 (240)
Q Consensus 145 ev~~~l~~~i~~~------~iLVGH~~~~Dl~-~L~~~-------~~----~~iDT~~l~~~~~~~~~-~~sL~~L~~~~ 205 (240)
+|+.+|.+|+.+. .++||||+.||+. ||+.. .+ .++||..+|+...+.+. .++|..|++ +
T Consensus 205 eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~-~ 283 (349)
T 1zbu_A 205 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-K 283 (349)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHH-H
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHH-H
Confidence 9999999999633 5999999999999 99752 22 58999988876544332 378999996 6
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 206 LHQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 206 L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
+|++.++.+|+|++||++|++||.+++++..
T Consensus 284 ~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 284 LGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9977764479999999999999999887653
No 14
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.92 E-value=9.4e-25 Score=187.55 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=129.2
Q ss_pred CCCcEEEEEEeecCCCCC-ccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccceecCCCCHH-hhccCCCCCH
Q psy3897 76 NGYGVYALDTEMVYTVHG-LEVARVTVVNV----DGRL----IYNTLVKP--DCEIIDYNTKYSGISAK-DFIRNPYKTL 143 (240)
Q Consensus 76 ~~~~~valD~E~tg~~~g-~ei~~v~vv~~----~g~~----~~d~lVkP--~~~I~~~~t~~~GIt~e-dl~~a~~~~~ 143 (240)
....+|+||+||||+++. .+|++|++|.. +|.+ .|++||+| ..+|+++++++||||++ ++.+++. +
T Consensus 35 ~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~--~ 112 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVS--G 112 (235)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBC--H
T ss_pred cCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC--H
Confidence 346799999999999865 58999999974 5653 39999999 56999999999999999 9999988 9
Q ss_pred HHHHHHHHhhhc--------CCcEEEEEchHHHHHHHhcc------C------CCeeeccccCcccCCCCCCccHHHHHH
Q psy3897 144 KDVQNDLMGFVS--------KDSIIVGHGLENDLRALKLI------H------SNIIDTSVLFPHSFGLPYRRSLKSIVS 203 (240)
Q Consensus 144 ~ev~~~l~~~i~--------~~~iLVGH~~~~Dl~~L~~~------~------~~~iDT~~l~~~~~~~~~~~sL~~L~~ 203 (240)
.+++++|.+++. ++.++||||+.||+.+|+.. . ..++||+.+++...+ .++|..|++
T Consensus 113 ~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~ 189 (235)
T 3v9w_A 113 YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVLSKACQ 189 (235)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCHHHHHH
Confidence 999999999984 47999999999999999752 1 247999988765532 358999997
Q ss_pred HHcCCCCCC-CCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 204 QLLHQSIQS-GTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 204 ~~L~~~iq~-~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
++|++++. ..|+|++||++|++||.+++++..
T Consensus 190 -~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 190 -TAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp -HHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 58977754 489999999999999998887643
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.9e-24 Score=181.02 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCcEEEEEEeecCCCCC-ccEEEEEEEEcCCc--EE---EEEEEcCCCcc----cccceec---CCCCHHhhccCCCCCH
Q psy3897 77 GYGVYALDTEMVYTVHG-LEVARVTVVNVDGR--LI---YNTLVKPDCEI----IDYNTKY---SGISAKDFIRNPYKTL 143 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g-~ei~~v~vv~~~g~--~~---~d~lVkP~~~I----~~~~t~~---~GIt~edl~~a~~~~~ 143 (240)
..++|+|||||||+++. .+|++|++|..+|. ++ |+++|+|..+| +++.+++ ||||++++.++|+ +
T Consensus 8 ~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~--~ 85 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT--H 85 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC--H
T ss_pred CCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC--H
Confidence 45799999999999875 58999999886555 33 78999999877 5555555 9999999999998 9
Q ss_pred HHHHHHHHhhhcCCcE------EEEEchHHHHHHHhccC--------CCeeeccccCcccCCCCCCccHHHHHHHHc---
Q psy3897 144 KDVQNDLMGFVSKDSI------IVGHGLENDLRALKLIH--------SNIIDTSVLFPHSFGLPYRRSLKSIVSQLL--- 206 (240)
Q Consensus 144 ~ev~~~l~~~i~~~~i------LVGH~~~~Dl~~L~~~~--------~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L--- 206 (240)
.+|+++|.+|++ +.+ |||||+.||+.||+... .+.+|+. +|..|++.++
T Consensus 86 ~ev~~~~~~~l~-~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-------------~l~~l~~~~~p~~ 151 (194)
T 2gbz_A 86 AQAEAQTVAFLG-EWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-------------TIKELARRWAPAV 151 (194)
T ss_dssp HHHHHHHHHHHT-TTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-------------HHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHH-HhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-------------HHHHHHHHhCHHH
Confidence 999999999995 777 99999999999998743 3445543 3555555433
Q ss_pred --CCCCCCCCCChHHHHHHHHHHHHHHHhhhh
Q psy3897 207 --HQSIQSGTHDSFEDARACIDLILWKLLSDF 236 (240)
Q Consensus 207 --~~~iq~~~H~A~eDA~at~~L~~~~l~~~~ 236 (240)
+... .++|+|++||++|++||.+..++-.
T Consensus 152 ~~~i~~-~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 152 ASGFAK-SSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp GTTCCC-CSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred HhCCCC-CCCcccHHHHHHHHHHHHHHHHHhc
Confidence 2222 2379999999999999998876543
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.89 E-value=2.3e-23 Score=174.05 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=111.3
Q ss_pred CCCCcEEEEEEeecCCCCC-ccEEEEEEEEcCC--cEE---EEEEEcCCC----ccccc---ceecCCCCHHhhccCCCC
Q psy3897 75 PNGYGVYALDTEMVYTVHG-LEVARVTVVNVDG--RLI---YNTLVKPDC----EIIDY---NTKYSGISAKDFIRNPYK 141 (240)
Q Consensus 75 ~~~~~~valD~E~tg~~~g-~ei~~v~vv~~~g--~~~---~d~lVkP~~----~I~~~---~t~~~GIt~edl~~a~~~ 141 (240)
+...++|+|||||||+++. .+|++|++|-.+| .++ ++.+|+|+. .+++. .+.+||||+++++++|.
T Consensus 6 ~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~- 84 (186)
T 3tr8_A 6 FSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD- 84 (186)
T ss_dssp CCTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC-
T ss_pred CCCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC-
Confidence 4566899999999999976 5788888885454 443 456786433 23444 44567999999999998
Q ss_pred CHHHHHHHHHhhhc-----CCcEEEEEchHHHHHHHhcc--------CCCeee--ccc-cCcccCCCCCCccHHHHHHHH
Q psy3897 142 TLKDVQNDLMGFVS-----KDSIIVGHGLENDLRALKLI--------HSNIID--TSV-LFPHSFGLPYRRSLKSIVSQL 205 (240)
Q Consensus 142 ~~~ev~~~l~~~i~-----~~~iLVGH~~~~Dl~~L~~~--------~~~~iD--T~~-l~~~~~~~~~~~sL~~L~~~~ 205 (240)
+++|.++|++|+. ++++|||||+.||+.||+.. +.++|| |.. |.+... +.+..
T Consensus 85 -~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~-----P~~~~----- 153 (186)
T 3tr8_A 85 -EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWA-----PQIAA----- 153 (186)
T ss_dssp -HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHC-----HHHHT-----
T ss_pred -HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHC-----ccccc-----
Confidence 9999999999994 48999999999999999863 567899 654 443321 12211
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHhhhhc
Q psy3897 206 LHQSIQSGTHDSFEDARACIDLILWKLLSDFR 237 (240)
Q Consensus 206 L~~~iq~~~H~A~eDA~at~~L~~~~l~~~~~ 237 (240)
|.... +.|+|++||++|.+++.+..+.-++
T Consensus 154 -~~~~~-~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 154 -AHIKE-SQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp -TSCCC-CCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -cCCCC-CCcChHHHHHHHHHHHHHHHHHhhc
Confidence 43333 3899999999999999998877554
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.89 E-value=2.8e-23 Score=196.03 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=123.4
Q ss_pred CCcEEEEEEeecCCCCC-ccEEEEEEEEc--CCcEE---EEEEEcCCCcc--cccceecCCCCHHhhccCCCCCHHHHHH
Q psy3897 77 GYGVYALDTEMVYTVHG-LEVARVTVVNV--DGRLI---YNTLVKPDCEI--IDYNTKYSGISAKDFIRNPYKTLKDVQN 148 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g-~ei~~v~vv~~--~g~~~---~d~lVkP~~~I--~~~~t~~~GIt~edl~~a~~~~~~ev~~ 148 (240)
..++|+||+||||+++. .+|++|++|.. +|.++ |++||+|..+| .+.++.+||||++++.++|.. +.+|+.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~-~~evl~ 86 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN-EAAFAA 86 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBC-HHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCC-HHHHHH
Confidence 45799999999999876 68999999875 57666 99999999988 567889999999999998874 799999
Q ss_pred HHHhhhc-CCcEEEEEc-hHHHHHHHhcc---------C------CCeeeccccCcccC-------C------CCCCccH
Q psy3897 149 DLMGFVS-KDSIIVGHG-LENDLRALKLI---------H------SNIIDTSVLFPHSF-------G------LPYRRSL 198 (240)
Q Consensus 149 ~l~~~i~-~~~iLVGH~-~~~Dl~~L~~~---------~------~~~iDT~~l~~~~~-------~------~~~~~sL 198 (240)
+|.++++ +++++|||| +.||+.+|+.. . ..++||..+++... . ...+++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 9999995 489999999 99999999852 1 34688876543211 0 1124689
Q ss_pred HHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 199 KSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 199 ~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
..|++ ++|++... +|+|++||++|++|+.+..++
T Consensus 167 ~~L~~-~~Gi~~~~-aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLTK-ANGIEHSN-AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHH-HTTCCCC----CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCCCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99996 68966543 799999999999999876654
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.05 E-value=2e-09 Score=89.68 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=93.9
Q ss_pred CcEEEEEEeecCCCCCccEEEEEEEEcCCcEEEEEEE--cCCCcccccce-e-cCCCCHHhhccCCCCCHHHHHHHHHhh
Q psy3897 78 YGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLV--KPDCEIIDYNT-K-YSGISAKDFIRNPYKTLKDVQNDLMGF 153 (240)
Q Consensus 78 ~~~valD~E~tg~~~g~ei~~v~vv~~~g~~~~d~lV--kP~~~I~~~~t-~-~~GIt~edl~~a~~~~~~ev~~~l~~~ 153 (240)
-.-|++|||+++.....+|++|++|..+|+..|-..- .|. .+.++.. . +.++.........+ ..++..+|.+|
T Consensus 22 m~r~FlDTEFt~d~~~~eLISIGlV~EdGrEFYav~~d~d~~-~~~~wVr~~Vlp~L~~~~~~~~~s--~~~i~~~L~~F 98 (190)
T 4hec_A 22 MVRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPE-RAGSWVRTHVLPKLPPPASQLWRS--RQQIRLDLEEF 98 (190)
T ss_dssp EEEEEEEEEEEECSSCEEEEEEEEEETTSCEEEEEETTSCGG-GCCHHHHHHTGGGSCCTTSTTEEC--HHHHHHHHHHH
T ss_pred eeEEEEeeeecCCCCCCCEEEEEEEcCCCCEEEEEecCCChh-hCcHHHHhccccCCCCCcccccCC--HHHHHHHHHHH
Confidence 3459999999986666799999999999987554332 122 2233322 1 34444322222223 89999999999
Q ss_pred hcC----CcEEEEEchHHHHHHHhccCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCC-C---CCCCChHHHHHHHH
Q psy3897 154 VSK----DSIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSI-Q---SGTHDSFEDARACI 225 (240)
Q Consensus 154 i~~----~~iLVGH~~~~Dl~~L~~~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~i-q---~~~H~A~eDA~at~ 225 (240)
+.. ...|+||+..+|..+|........+ .|... +.....|+.+.. .+|..- . .+.|+||.||++.+
T Consensus 99 L~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~----lP~~~-p~~~~dlr~~~~-~~g~~~lp~~~~~~H~AL~DAR~n~ 172 (190)
T 4hec_A 99 LRIDGTDSIELWAWVGAYDHVALCQLWGPMTA----LPPTV-PRFTRELRQLWE-DRGCPRMPPRPRDVHDALVDARDQL 172 (190)
T ss_dssp TTTTSSCEEEEEESSCHHHHHHHHTTTSSGGG----SCTTS-CSSCEEHHHHHH-HTTCCCCCC-----CCHHHHHHHHH
T ss_pred HHhcCCCCCEEEEecccccHHHHHHHhccccc----CCccc-chhhHHHHHHHH-HcCCCCCCCCCCCCcCcHHHHHHHH
Confidence 952 2259999999999999875433222 12111 112346888885 465431 1 12699999999999
Q ss_pred HHHHHHHhh
Q psy3897 226 DLILWKLLS 234 (240)
Q Consensus 226 ~L~~~~l~~ 234 (240)
..+..+...
T Consensus 173 ~~~~~~~~~ 181 (190)
T 4hec_A 173 RRFRLITST 181 (190)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhCc
Confidence 988766543
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.81 E-value=5e-08 Score=94.27 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=94.0
Q ss_pred cEEEEEEeecCCCC-CccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhcCC
Q psy3897 79 GVYALDTEMVYTVH-GLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKD 157 (240)
Q Consensus 79 ~~valD~E~tg~~~-g~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~~~ 157 (240)
++|+||+||+|.+. ..+++.|+++-.+|... ||.+... .+ |+ .+++. +.++.+.|..++.+.
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~~------~~-~~-----~~~l~--~~~vl~~L~~~L~d~ 89 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAHD------YL-DA-----PDQIS--RERALELLKPLLEDE 89 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCCC------ST-TC-----CCCCC--HHHHHHHHHHHHTCT
T ss_pred CeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEecccc------cc-cc-----ccccC--HHHHHHHHHHHHcCC
Confidence 67999999999976 45788888775455543 4422110 01 22 22344 889999999999632
Q ss_pred -cEEEEEchHHHHHHHhcc----CCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCC-------C-----C--C----
Q psy3897 158 -SIIVGHGLENDLRALKLI----HSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQ-------S-----G--T---- 214 (240)
Q Consensus 158 -~iLVGH~~~~Dl~~L~~~----~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq-------~-----~--~---- 214 (240)
.++||||+.||+.+|+.. .+.++||+.+.........+++|..|++.|||.... . . .
T Consensus 90 ~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le 169 (605)
T 2kfn_A 90 KALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE 169 (605)
T ss_dssp TSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHH
T ss_pred CCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHH
Confidence 389999999999999863 234899987543322112257899999988775421 0 0 1
Q ss_pred ---CChHHHHHHHHHHHHHHHhh
Q psy3897 215 ---HDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 215 ---H~A~eDA~at~~L~~~~l~~ 234 (240)
|.|..||.++++|+..+..+
T Consensus 170 ~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 170 EAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999998866543
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.50 E-value=6.3e-08 Score=95.02 Aligned_cols=129 Identities=17% Similarity=0.068 Sum_probs=82.8
Q ss_pred EEEEEEeecCCCCC-ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhcCCc
Q psy3897 80 VYALDTEMVYTVHG-LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDS 158 (240)
Q Consensus 80 ~valD~E~tg~~~g-~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~~~~ 158 (240)
+|+||+||||+... .+|+.|.+.+..+...+ .+.|. . ++++.+.|..++.++.
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~--~~~p~----------------------~--i~~~l~~L~~~l~~~~ 54 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SYRPS----------------------D--FGAYLDALEAEVARGG 54 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EECGG----------------------G--HHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE--EEChH----------------------H--HHHHHHHHHHHHhcCC
Confidence 58999999999864 57888888885432221 12221 1 4556667777775468
Q ss_pred EEEEEch-HHHHHHHhcc-----------C-CCeeeccccCcccCCCCCCccHHHHHHHHc-------CCC---------
Q psy3897 159 IIVGHGL-ENDLRALKLI-----------H-SNIIDTSVLFPHSFGLPYRRSLKSIVSQLL-------HQS--------- 209 (240)
Q Consensus 159 iLVGH~~-~~Dl~~L~~~-----------~-~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L-------~~~--------- 209 (240)
++||||+ .||+.+|... . ..++||+.+.........+++|..|++.|| |..
T Consensus 55 ~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~ 134 (698)
T 1x9m_A 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYK 134 (698)
T ss_dssp CEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHH
Confidence 8999998 9999999643 2 358999874332211112456666666554 211
Q ss_pred -------------------CCC-C---CCChHHHHHHHHHHHHHHHhh
Q psy3897 210 -------------------IQS-G---THDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 210 -------------------iq~-~---~H~A~eDA~at~~L~~~~l~~ 234 (240)
+.. . .|-|..||.++++|+..+..+
T Consensus 135 ~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~ 182 (698)
T 1x9m_A 135 DDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp HHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0 255789999999998877664
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.06 E-value=5.2e-05 Score=66.73 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred CCcEEEEEEeecCCCCC---c-------------------cEEEEEEE--EcCCcE-------EEEEEEcCCCccc-ccc
Q psy3897 77 GYGVYALDTEMVYTVHG---L-------------------EVARVTVV--NVDGRL-------IYNTLVKPDCEII-DYN 124 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g---~-------------------ei~~v~vv--~~~g~~-------~~d~lVkP~~~I~-~~~ 124 (240)
..+|||+|+|++|+... . .|+++++. +.+|+. .|+..+.|...+- ...
T Consensus 33 ~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~S 112 (285)
T 4gmj_B 33 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDS 112 (285)
T ss_dssp HCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHH
T ss_pred cCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHH
Confidence 35799999999997421 0 26776654 445542 2555555544321 112
Q ss_pred eec---CCCCHHhhccCCCCCHHHHHHHHHh---hhcCCcEEEEEchHHHHHHHhc--------------------cCCC
Q psy3897 125 TKY---SGISAKDFIRNPYKTLKDVQNDLMG---FVSKDSIIVGHGLENDLRALKL--------------------IHSN 178 (240)
Q Consensus 125 t~~---~GIt~edl~~a~~~~~~ev~~~l~~---~i~~~~iLVGH~~~~Dl~~L~~--------------------~~~~ 178 (240)
..+ |||.=......+.+ ..+..+.+.. .++++..+|.|+..+|+.+|-. ..|.
T Consensus 113 I~fL~~~G~DF~k~~~~GI~-~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~ 191 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIE-TQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBC-HHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSC
T ss_pred HHHHHHcCCCHHHHHHcCCC-HHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCch
Confidence 222 77776666555553 4444444432 2345667777776789988643 2357
Q ss_pred eeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHh
Q psy3897 179 IIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLL 233 (240)
Q Consensus 179 ~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~ 233 (240)
+.||-.+.....+. +.+|+.+|+. |+..--+..|.|-.|++.|+.+|.++.+
T Consensus 192 vYD~K~l~~~~~~l--~ggL~~lA~~-L~v~r~g~~HqAGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 192 IYDVKYLMKSCKNL--KGGLQEVAEQ-LELERIGPQHQAGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp EEEHHHHGGGSTTC--CSCHHHHHHH-TTCCCCSCTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcccc--CChHHHHHHh-CCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 88998887766433 4589999975 9865433479999999999999987654
No 22
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=97.89 E-value=7.4e-05 Score=69.31 Aligned_cols=128 Identities=15% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCcEEEEEEeecCCCCCc-cEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhc
Q psy3897 77 GYGVYALDTEMVYTVHGL-EVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVS 155 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g~-ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~ 155 (240)
....|+||+|++...... .++-|.+-..++ ..+|.|..- .++ ...|..++.
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~----~~lidpl~l------------~~~------------l~~L~~lL~ 179 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQISTRTE----DFIIDTLEL------------RSD------------MYILNESLT 179 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEEEECSSC----EEEEETTTT------------GGG------------GGGGHHHHT
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEEEEeCCc----EEEEEeccc------------hhh------------HHHHHHHHc
Confidence 357899999998766432 444444443332 234444321 011 112333443
Q ss_pred -CCcEEEEEchHHHHHHHh-c---cCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCC------C---------C
Q psy3897 156 -KDSIIVGHGLENDLRALK-L---IHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG------T---------H 215 (240)
Q Consensus 156 -~~~iLVGH~~~~Dl~~L~-~---~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~------~---------H 215 (240)
.+-+-||||+.+|+.+|. . ....++||....... +.+ +.+|..|++.|||..+..+ + +
T Consensus 180 dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL-~~~-~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~ 257 (428)
T 3saf_A 180 DPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL-NLG-RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLS 257 (428)
T ss_dssp CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHT-TCS-CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHH
T ss_pred CCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHh-CCC-CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHH
Confidence 345679999999999996 3 234689998654333 222 4699999999999877542 1 2
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q psy3897 216 DSFEDARACIDLILWKLLS 234 (240)
Q Consensus 216 ~A~eDA~at~~L~~~~l~~ 234 (240)
-|..||.++.+|+..+..+
T Consensus 258 YAA~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 258 YARDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2568999999887755443
No 23
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.82 E-value=1.8e-05 Score=75.56 Aligned_cols=116 Identities=9% Similarity=-0.098 Sum_probs=80.6
Q ss_pred cEEEEEEeecCCCCC-ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhcCC
Q psy3897 79 GVYALDTEMVYTVHG-LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKD 157 (240)
Q Consensus 79 ~~valD~E~tg~~~g-~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~~~ 157 (240)
+.+++|+|+.+.+.- .+++-|++-. .|+. | +| . ++...|..|+. +
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a-~--~i----------------~-------------~~l~~l~~~l~-d 56 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRV-H--RA----------------P-------------EPYKALRDLKE-A 56 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEE-E--EC----------------S-------------SHHHHHTTCSS-B
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEE-E--Ee----------------h-------------hhHHHHHHHHc-C
Confidence 569999999998754 3566666553 3332 2 11 0 14567888885 6
Q ss_pred cEEEEEchHHHHHHHhccCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 158 SIIVGHGLENDLRALKLIHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 158 ~iLVGH~~~~Dl~~L~~~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
..+||||+.+|+.........++||+....... +. +++|..||+.|++. -+|.+.+||.++++|+..+..+
T Consensus 57 ~~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~-p~-~~~L~~La~~yl~~----~gk~a~~DA~~t~~L~~~L~~~ 127 (540)
T 4dfk_A 57 RGLLAKDLSVLALREGLGLPPGDDPMLLAYLLD-PS-NTTPEGVARRYGGE----WTEEAGERAALSERLFANLWGR 127 (540)
T ss_dssp CSTTHHHHHHHHHHTTCCCCBCCCHHHHHHHHC-TT-CCCHHHHHHHHTSC----CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeccHHHHHHcCCCCCcceeHHHHHHHhC-CC-CCCHHHHHHHHhhh----hccchHHHHHHHHHHHHHHHHH
Confidence 889999999999922222236789986543332 22 67899999999884 3688999999999998765543
No 24
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.67 E-value=8.4e-05 Score=62.36 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHhhhc-CCcEEEEEchHHHHHHHhcc----CCCeeeccccCcccCCC--CCCccHHHHHHHHcCCCC-CCC--------
Q psy3897 150 LMGFVS-KDSIIVGHGLENDLRALKLI----HSNIIDTSVLFPHSFGL--PYRRSLKSIVSQLLHQSI-QSG-------- 213 (240)
Q Consensus 150 l~~~i~-~~~iLVGH~~~~Dl~~L~~~----~~~~iDT~~l~~~~~~~--~~~~sL~~L~~~~L~~~i-q~~-------- 213 (240)
|.+++. ++-+.|||++.+|+..|+.. ...++|+..++....|. ..+.+|+.|++++||..+ +..
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 445553 45678999999999999863 35799998665443333 235799999999999888 210
Q ss_pred ------CCChHHHHHHHHHHHHHHHh
Q psy3897 214 ------THDSFEDARACIDLILWKLL 233 (240)
Q Consensus 214 ------~H~A~eDA~at~~L~~~~l~ 233 (240)
-+=|..||+++.+|+....+
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 13367899999998876543
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.64 E-value=0.0004 Score=68.86 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=86.5
Q ss_pred CCCcEEEEEEeecC---CCCC-ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHH
Q psy3897 76 NGYGVYALDTEMVY---TVHG-LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLM 151 (240)
Q Consensus 76 ~~~~~valD~E~tg---~~~g-~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~ 151 (240)
.+.++++||+||++ .++. .+|+.|+..+.++..++.. +| |....+...+. -.+++..|.
T Consensus 133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~--~~-------------i~~~~v~~~~~--E~~LL~~f~ 195 (775)
T 1qht_A 133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITW--KK-------------IDLPYVDVVST--EKEMIKRFL 195 (775)
T ss_dssp CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEES--SC-------------CCCSSEEECSC--HHHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEee--cc-------------ccccceEEcCC--HHHHHHHHH
Confidence 35689999999998 3333 4699999887665543321 11 11123444455 678888888
Q ss_pred hhhcC--CcEEEEEch-HHHHHHHhcc------C------------------------CC-eeeccccCcccCCCCCCcc
Q psy3897 152 GFVSK--DSIIVGHGL-ENDLRALKLI------H------------------------SN-IIDTSVLFPHSFGLPYRRS 197 (240)
Q Consensus 152 ~~i~~--~~iLVGH~~-~~Dl~~L~~~------~------------------------~~-~iDT~~l~~~~~~~~~~~s 197 (240)
+++.. -.+|||||. .||+.+|..- . .+ .+|+..+++.....+ +++
T Consensus 196 ~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~-sys 274 (775)
T 1qht_A 196 RVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP-TYT 274 (775)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCS-CCC
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcC-cCC
Confidence 88852 349999997 6799997531 0 01 356655544432222 579
Q ss_pred HHHHHHHHcCCCCCCC-----------CC-------ChHHHHHHHHHHHHH
Q psy3897 198 LKSIVSQLLHQSIQSG-----------TH-------DSFEDARACIDLILW 230 (240)
Q Consensus 198 L~~L~~~~L~~~iq~~-----------~H-------~A~eDA~at~~L~~~ 230 (240)
|+.+|+.+||.....- +. -.+.||..+..|+.+
T Consensus 275 L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~ 325 (775)
T 1qht_A 275 LEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGRE 325 (775)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988899653321 11 125788888888654
No 26
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.40 E-value=0.00065 Score=56.15 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHhhhcC-CcEEEEEchHHHHHHHhc-c---CCCeee-ccccCcccCCCCCCccHHHHHHHHcCCCCCCC---------
Q psy3897 149 DLMGFVSK-DSIIVGHGLENDLRALKL-I---HSNIID-TSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG--------- 213 (240)
Q Consensus 149 ~l~~~i~~-~~iLVGH~~~~Dl~~L~~-~---~~~~iD-T~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~--------- 213 (240)
.|..++.. +.+.||||+.+|+..|.. . ...++| |.. .....++..+++|+.|++.+||..+..+
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~l-Aayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~ 165 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDV-ANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWS 165 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHH-HHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTT
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHH-HHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCC
Confidence 35556643 457899999999999976 2 234899 653 3222222346799999999988665221
Q ss_pred C--------CChHHHHHHHHHHHHHHHhh
Q psy3897 214 T--------HDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 214 ~--------H~A~eDA~at~~L~~~~l~~ 234 (240)
. +-|..||.++.+|+.....+
T Consensus 166 ~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 166 NFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11468999999887765543
No 27
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.35 E-value=0.0048 Score=53.23 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=97.4
Q ss_pred CCcEEEEEEeecCCCC---Cc-------------------cEEEEEE--EEcCCcE-----E--EEEEEcCCCc-ccccc
Q psy3897 77 GYGVYALDTEMVYTVH---GL-------------------EVARVTV--VNVDGRL-----I--YNTLVKPDCE-IIDYN 124 (240)
Q Consensus 77 ~~~~valD~E~tg~~~---g~-------------------ei~~v~v--v~~~g~~-----~--~d~lVkP~~~-I~~~~ 124 (240)
..++||+|+|++|+.. |. .|+++++ .+.+|+. . |+........ .....
T Consensus 23 ~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~S 102 (252)
T 2d5r_A 23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDS 102 (252)
T ss_dssp HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHH
T ss_pred hCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHH
Confidence 3579999999999852 20 2566555 4556653 2 3333222211 11111
Q ss_pred e---ecCCCCHHhhccCCCCCHHHHHHHHHh---hhcCCcEEEEEchHHHHHHHhc--------------------cCCC
Q psy3897 125 T---KYSGISAKDFIRNPYKTLKDVQNDLMG---FVSKDSIIVGHGLENDLRALKL--------------------IHSN 178 (240)
Q Consensus 125 t---~~~GIt~edl~~a~~~~~~ev~~~l~~---~i~~~~iLVGH~~~~Dl~~L~~--------------------~~~~ 178 (240)
. +-+||.=+.....+.+ ..+..+.+.. .++++-.+|.++..+|+.+|=. ..|.
T Consensus 103 i~fL~~~G~DF~k~~~~GI~-~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~ 181 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIE-TQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 181 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBC-HHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSC
T ss_pred HHHHHHcCCChhHHHhcCCC-HHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcc
Confidence 1 2357766666655554 4444444443 3345667889999999987632 2357
Q ss_pred eeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 179 IIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 179 ~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
+.||-.+.....+. +.+|+.||+ .||..--+..|.|-.|+..|+..|.++.+.
T Consensus 182 iyD~K~l~~~~~~l--~~gL~~la~-~L~v~r~g~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 182 IYDVKYLMKSCKNL--KGGLQEVAE-QLELERIGPQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp EEEHHHHGGGCTTC--CSSHHHHHH-HHTCCCCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccc--CCCHHHHHH-HcCCCccCcccchhhhHHHHHHHHHHHHHH
Confidence 89998877766433 468999997 588554344799999999999999877654
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.33 E-value=0.0027 Score=57.77 Aligned_cols=149 Identities=12% Similarity=0.085 Sum_probs=86.5
Q ss_pred CCcEEEEEEeecCC---CC---CccEEEEEEEEcCCcE--EEEEEEcC-CCcccccce-------ec--CCCCHH---hh
Q psy3897 77 GYGVYALDTEMVYT---VH---GLEVARVTVVNVDGRL--IYNTLVKP-DCEIIDYNT-------KY--SGISAK---DF 135 (240)
Q Consensus 77 ~~~~valD~E~tg~---~~---g~ei~~v~vv~~~g~~--~~d~lVkP-~~~I~~~~t-------~~--~GIt~e---dl 135 (240)
+.++++||+||++. ++ ..+|+.|++++..+.. +| .++++ .....++.. .+ ..-.+. .+
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v 183 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRV 183 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEE-EEeeccCCCCCccccccccccccccccccccccCCCe
Confidence 45799999999871 11 2379999999875543 23 23543 221111100 01 111111 11
Q ss_pred --ccCCCCCHHHHHHHHHhhhc--CCcEEEEEch-HHHHHHHhcc----C-----------C------------------
Q psy3897 136 --IRNPYKTLKDVQNDLMGFVS--KDSIIVGHGL-ENDLRALKLI----H-----------S------------------ 177 (240)
Q Consensus 136 --~~a~~~~~~ev~~~l~~~i~--~~~iLVGH~~-~~Dl~~L~~~----~-----------~------------------ 177 (240)
...+. -.+++..|.+++. .-.|++|||+ .||+.+|..- + .
T Consensus 184 ~v~~~~~--E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~ 261 (388)
T 1noy_A 184 IYMPFDN--ERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYS 261 (388)
T ss_dssp EEEEESC--HHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEE
T ss_pred EEEEcCC--HHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEE
Confidence 12334 6788889888884 3469999997 6799986420 0 0
Q ss_pred ---C-eeeccccCccc-CCCCCCccHHHHHHHHcCCCCCCCCC-C----------------hHHHHHHHHHHHHH
Q psy3897 178 ---N-IIDTSVLFPHS-FGLPYRRSLKSIVSQLLHQSIQSGTH-D----------------SFEDARACIDLILW 230 (240)
Q Consensus 178 ---~-~iDT~~l~~~~-~~~~~~~sL~~L~~~~L~~~iq~~~H-~----------------A~eDA~at~~L~~~ 230 (240)
+ ++|+..+++.. ...-.+++|+.+|+.+||..-. .| . .+.||..+++|+.+
T Consensus 262 i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~--d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 262 IDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL--PYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp ETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC--CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC--CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 34555444431 1102257999999989985422 23 2 36789999988875
No 29
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.27 E-value=0.0063 Score=54.39 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCCcEEEEEEeecCCCCC---c-------------------cEEEEEE--EEcCCcE-----E--EEEEEcCCCcc-ccc
Q psy3897 76 NGYGVYALDTEMVYTVHG---L-------------------EVARVTV--VNVDGRL-----I--YNTLVKPDCEI-IDY 123 (240)
Q Consensus 76 ~~~~~valD~E~tg~~~g---~-------------------ei~~v~v--v~~~g~~-----~--~d~lVkP~~~I-~~~ 123 (240)
...++||+|+|++|+... . .|+++++ .+.+|+. . |+.+......+ ...
T Consensus 43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~~ 122 (333)
T 2p51_A 43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPE 122 (333)
T ss_dssp TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHH
T ss_pred hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHH
Confidence 356899999999998621 0 2566555 4556653 2 44442222111 111
Q ss_pred ce---ecCCCCHHhhccCCCCCHHHHHHHHHh---hhcCCcEEEEEchHHHHHHHhc--------------------cCC
Q psy3897 124 NT---KYSGISAKDFIRNPYKTLKDVQNDLMG---FVSKDSIIVGHGLENDLRALKL--------------------IHS 177 (240)
Q Consensus 124 ~t---~~~GIt~edl~~a~~~~~~ev~~~l~~---~i~~~~iLVGH~~~~Dl~~L~~--------------------~~~ 177 (240)
.. +-+||.=+.....+.+ ..+..+.|.. .++++-.+|.++..+|+.+|=. ..+
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~-~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP 201 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIE-PADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP 201 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBC-HHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCChhHHHHcCCC-HHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCc
Confidence 11 2267776666655554 5555555443 3445667888888999987532 235
Q ss_pred CeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 178 NIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 178 ~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
.+.||-.+.....+. +.+|+.+|+ .||..-.+..|.|-.|++.|+.+|.++.+.
T Consensus 202 ~iYD~K~l~~~~~~l--~ggL~~lA~-~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 202 KNYDIKYIMKSVLNN--SKGLQDIAD-DLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp SEEEHHHHHTTTTCC--CCCHHHHHH-HTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhccc--cCCHHHHHH-HcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 788988777665432 458999997 588554444799999999999999877653
No 30
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.26 E-value=0.0015 Score=59.09 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=57.1
Q ss_pred HHhhhcC-CcEEEEEchHHHHHHHhc----cCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCC---------
Q psy3897 150 LMGFVSK-DSIIVGHGLENDLRALKL----IHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTH--------- 215 (240)
Q Consensus 150 l~~~i~~-~~iLVGH~~~~Dl~~L~~----~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H--------- 215 (240)
|..++.. +-+.||||+.+|+.+|.. ....++||....... +...+++|..|++.|||..+..+ +
T Consensus 66 L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL-~~~~~~~L~~L~~~~l~~~l~K~-~~~sdw~~rp 143 (375)
T 1yt3_A 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKS-ESRTDWLARP 143 (375)
T ss_dssp HHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHT-TCCTTCCHHHHHHHHHCCCCCCT-TTTSCTTSSS
T ss_pred HHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHc-CCCCChhHHHHHHHHcCCCCCCC-cccCCCCCCC
Confidence 4455543 456899999999999964 234689998654333 33446899999999988765432 2
Q ss_pred -C------hHHHHHHHHHHHHHHHhh
Q psy3897 216 -D------SFEDARACIDLILWKLLS 234 (240)
Q Consensus 216 -~------A~eDA~at~~L~~~~l~~ 234 (240)
. |..||.++.+|+..+..+
T Consensus 144 L~~~q~~YAa~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 144 LTERQCEYAAADVWYLLPITAKLMVE 169 (375)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 457888888887755443
No 31
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.11 E-value=0.0074 Score=53.03 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=93.4
Q ss_pred CCCcEEEEEEeecCCCC---C-------------------ccEEEEEEE--EcCCcE------E--EEEEEcCCCcc-cc
Q psy3897 76 NGYGVYALDTEMVYTVH---G-------------------LEVARVTVV--NVDGRL------I--YNTLVKPDCEI-ID 122 (240)
Q Consensus 76 ~~~~~valD~E~tg~~~---g-------------------~ei~~v~vv--~~~g~~------~--~d~lVkP~~~I-~~ 122 (240)
...++||+|+|++|+.. | ..|+++++. +.+|+. . |+.+......+ ..
T Consensus 36 ~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~ 115 (289)
T 1uoc_A 36 SQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMST 115 (289)
T ss_dssp TTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCH
T ss_pred hhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCccccccH
Confidence 35689999999999752 1 036776664 445542 2 44432222110 01
Q ss_pred cc---eecCCCCHHhhccCCCCCHHHHHHHHHh---hhcCCcEEEEEchHHHHHHHhc--------------------cC
Q psy3897 123 YN---TKYSGISAKDFIRNPYKTLKDVQNDLMG---FVSKDSIIVGHGLENDLRALKL--------------------IH 176 (240)
Q Consensus 123 ~~---t~~~GIt~edl~~a~~~~~~ev~~~l~~---~i~~~~iLVGH~~~~Dl~~L~~--------------------~~ 176 (240)
.. .+-+||.=+.....+.+ ..+..+.+.. .++++-.+|.++..+|+.+|=. ..
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~-~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F 194 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGID-VFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBC-HHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChhHHHHcCCC-HHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhC
Confidence 01 12367766666555554 4444443333 2345668888888999987632 23
Q ss_pred CCeeeccccCcccCCC-------------CCCccHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 177 SNIIDTSVLFPHSFGL-------------PYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 177 ~~~iDT~~l~~~~~~~-------------~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
+.+.||-.+.+...+. +.+.+|+.||+ .||.+..+..|.|-.|++.|+..|.++.+.
T Consensus 195 P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~-~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 195 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLAD-ELGLPRFSIFTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHHH-HTTCCCCGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHH-HcCCCccCcccccHHHHHHHHHHHHHHHHH
Confidence 5788887655432211 22468999997 599665444799999999999999877654
No 32
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.05 E-value=0.0021 Score=59.09 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=56.2
Q ss_pred HHhhhcC-CcEEEEEchHHHHHHHhc----cCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCC------CC---
Q psy3897 150 LMGFVSK-DSIIVGHGLENDLRALKL----IHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG------TH--- 215 (240)
Q Consensus 150 l~~~i~~-~~iLVGH~~~~Dl~~L~~----~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~------~H--- 215 (240)
|..++.. +-+.||||+.+|+.+|.. ....++||....... +.. +++|..|++.|||..+..+ .-
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL-~~~-~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL 228 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI-GLP-RHSLAYLLENFANFKTSKKYQLADWRIRPL 228 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHH-TCS-CCSHHHHHHHHSCCCCCCTTTTSCTTCSSC
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHh-CCC-ccCHHHHHHHHcCCCCCccccccCCCCCCC
Confidence 4455543 456799999999999965 233599998654333 222 5799999999988766432 01
Q ss_pred C------hHHHHHHHHHHHHHHHhh
Q psy3897 216 D------SFEDARACIDLILWKLLS 234 (240)
Q Consensus 216 ~------A~eDA~at~~L~~~~l~~ 234 (240)
. |..||.++.+|+..+..+
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 468888888887755443
No 33
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.94 E-value=0.0074 Score=60.38 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=87.7
Q ss_pred CCCcEEEEEEee-cCCCCC--------ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHH
Q psy3897 76 NGYGVYALDTEM-VYTVHG--------LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDV 146 (240)
Q Consensus 76 ~~~~~valD~E~-tg~~~g--------~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev 146 (240)
.+.++++||+|| ++...+ .+|+.|++++.+|...+ .+++|... ......+.| ..+...+. -.++
T Consensus 188 p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~~---~~v~~~~~--E~~L 260 (847)
T 1s5j_A 188 PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLDG---ISVERFNT--EYEL 260 (847)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEETT---EEEEEESS--HHHH
T ss_pred CCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCCC---CeEEEeCC--HHHH
Confidence 356899999999 643221 36999999877764321 24454321 111112222 22333445 7899
Q ss_pred HHHHHhhhcCCcEEEEEch-HHHHHHHhcc---C--------------------CC-eeeccccCcc-------cCCCCC
Q psy3897 147 QNDLMGFVSKDSIIVGHGL-ENDLRALKLI---H--------------------SN-IIDTSVLFPH-------SFGLPY 194 (240)
Q Consensus 147 ~~~l~~~i~~~~iLVGH~~-~~Dl~~L~~~---~--------------------~~-~iDT~~l~~~-------~~~~~~ 194 (240)
+..|.+++..-.+|||||. .||+.+|..- + .. .+|....+.. +.+.-.
T Consensus 261 L~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~ 340 (847)
T 1s5j_A 261 LGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYN 340 (847)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCS
T ss_pred HHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccccc
Confidence 9999999976669999997 6899998631 0 01 2444443322 011112
Q ss_pred CccHHHHHHHHcCCCCCC-------C-----CCChHHHHHHHHHHH
Q psy3897 195 RRSLKSIVSQLLHQSIQS-------G-----THDSFEDARACIDLI 228 (240)
Q Consensus 195 ~~sL~~L~~~~L~~~iq~-------~-----~H~A~eDA~at~~L~ 228 (240)
.++|+.+|+.+||..-.. . ..=.+.||..+++|+
T Consensus 341 sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 341 EYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp SCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 579999999899864221 0 111356999999885
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=96.82 E-value=0.011 Score=58.78 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=79.9
Q ss_pred CCCCcEEEEEEeecCCCCCccEEEEEEEEcCCcEEEEEEEcCCC--cccccceecCCCCHHhhccCCCCCHHHHHHHHHh
Q psy3897 75 PNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMG 152 (240)
Q Consensus 75 ~~~~~~valD~E~tg~~~g~ei~~v~vv~~~g~~~~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~ 152 (240)
+.+.++++||+|+.+ .| ++..|+..+..-+.++- +=.|.. ++.+ -.+...+. -.+++..|.+
T Consensus 150 ~p~lrilsfDIE~~~--~g-~i~~I~~~~~~~~~v~~-l~~~~~~~~~~~----------~~V~~f~~--E~~lL~~f~~ 213 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG-ELYCIGLEGCGQRIVYM-LGPENGDASSLD----------FELEYVAS--RPQLLEKLNA 213 (786)
T ss_dssp CCCCCEEEEEEEECT--TS-CEEEEEEEETTEEEEEE-ESSCCSCCTTCS----------SEEEEESS--HHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC-CEEEEEecCCCCCeEEE-EecCCCCCCCCC----------ceEEEeCC--HHHHHHHHHH
Confidence 456799999999983 33 67888766543233321 111221 2221 12232334 5678888888
Q ss_pred hhcC--CcEEEEEch-HHHHHHHhcc------C---------------------------CC-eeeccccCcccCCCCCC
Q psy3897 153 FVSK--DSIIVGHGL-ENDLRALKLI------H---------------------------SN-IIDTSVLFPHSFGLPYR 195 (240)
Q Consensus 153 ~i~~--~~iLVGH~~-~~Dl~~L~~~------~---------------------------~~-~iDT~~l~~~~~~~~~~ 195 (240)
++.. -.||||||. .||+.+|..- . .+ .+|...+.+.....-..
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 7752 349999997 5799998520 0 01 24443333221111226
Q ss_pred ccHHHHHHHHcCCCCCCCCCCh----------------------HHHHHHHHHHHHH
Q psy3897 196 RSLKSIVSQLLHQSIQSGTHDS----------------------FEDARACIDLILW 230 (240)
Q Consensus 196 ~sL~~L~~~~L~~~iq~~~H~A----------------------~eDA~at~~L~~~ 230 (240)
++|+++|+.+||..-. .|+. +.||..+++|+.+
T Consensus 294 ysL~~Va~~~Lg~~K~--~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~k 348 (786)
T 3k59_A 294 FSLETVAQELLGEGKS--IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHK 348 (786)
T ss_dssp CSHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCc--ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999985422 2332 4788888888765
No 35
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=96.75 E-value=0.0015 Score=62.81 Aligned_cols=126 Identities=13% Similarity=-0.026 Sum_probs=78.3
Q ss_pred cEEEEEEeecCCCCC-ccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhc-C
Q psy3897 79 GVYALDTEMVYTVHG-LEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVS-K 156 (240)
Q Consensus 79 ~~valD~E~tg~~~g-~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~-~ 156 (240)
.-.++|+|+.+.+.- .+++-|++-...+ . .|| |.. . .++.+.|..++. +
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~--a--~yI-p~~---~---------------------~~~l~~Lk~lLed~ 80 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHG--R--FFL-RPE---T---------------------ALADPQFVAWLGDE 80 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTE--E--EEE-CHH---H---------------------HTTCHHHHHHHTCT
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCc--e--EEE-ccc---h---------------------hhHHHHHHHHHhCC
Confidence 356999999998864 3666666655432 1 334 210 0 012234555663 3
Q ss_pred CcEEEEEchHHHHHHHhcc----CCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCC------------------C
Q psy3897 157 DSIIVGHGLENDLRALKLI----HSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG------------------T 214 (240)
Q Consensus 157 ~~iLVGH~~~~Dl~~L~~~----~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~------------------~ 214 (240)
+...||||+.+|+.+|+.. ...++||+...--......+++|..|++.|||..+... .
T Consensus 81 ~i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~ 160 (592)
T 3pv8_A 81 TKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLA 160 (592)
T ss_dssp TSEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHH
T ss_pred CCeEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHH
Confidence 4689999999999999753 23578998532221111125689999999999765421 1
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy3897 215 HDSFEDARACIDLILWKLL 233 (240)
Q Consensus 215 H~A~eDA~at~~L~~~~l~ 233 (240)
.-|.+||.++.+|+.....
T Consensus 161 ~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 161 EHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2246789999888765543
No 36
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.71 E-value=0.0058 Score=56.54 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEchHHHHHHHhc-------------------cCCCeeeccccCcccC--CCCCCccHHHH
Q psy3897 143 LKDVQNDLMGFVSKDSIIVGHGLENDLRALKL-------------------IHSNIIDTSVLFPHSF--GLPYRRSLKSI 201 (240)
Q Consensus 143 ~~ev~~~l~~~i~~~~iLVGH~~~~Dl~~L~~-------------------~~~~~iDT~~l~~~~~--~~~~~~sL~~L 201 (240)
+..|.+.|.+ .+.+|||||.-.|+-++-. ..|.++||-.|..... ......+|..|
T Consensus 270 fr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l 346 (430)
T 2a1r_A 270 FSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAEL 346 (430)
T ss_dssp THHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHH
T ss_pred HHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHH
Confidence 4555555444 4789999999999997542 2468999977654321 11123589999
Q ss_pred HHHHcCCC-C-----------------CCCCCChHHHHHHHHHHHHHHHhh
Q psy3897 202 VSQLLHQS-I-----------------QSGTHDSFEDARACIDLILWKLLS 234 (240)
Q Consensus 202 ~~~~L~~~-i-----------------q~~~H~A~eDA~at~~L~~~~l~~ 234 (240)
... |... . ....|.|-.||+.|+.+|+++...
T Consensus 347 ~~~-l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 347 EKR-LKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp HHH-TTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 864 5432 1 011599999999999999977654
No 37
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.55 E-value=0.018 Score=53.38 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHhhhcCCcEEEEEchHHHHHHHhc---cCCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCC---------CCC
Q psy3897 149 DLMGFVSKDSIIVGHGLENDLRALKL---IHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSG---------THD 216 (240)
Q Consensus 149 ~l~~~i~~~~iLVGH~~~~Dl~~L~~---~~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~---------~H~ 216 (240)
.|..++. +...|||++.+|+.+|+. ....++||...... .+.. +++|..|++.|||.....+ .-+
T Consensus 86 ~L~~lL~-d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~l-L~~~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs 162 (440)
T 3cym_A 86 DFNRAVG-DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARL-LGLK-RFGLAAVTEHFLGLTLAKEHSAADWSYRPLP 162 (440)
T ss_dssp HHHHHHT-TCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHH-TTCS-SCSHHHHHHHHHCEECCCCCTTCCTTCSSCC
T ss_pred HHHHHHC-CCCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHH-hCCC-CCCHHHHHHHHhCCCcccccccCCCcCCCCC
Confidence 4556664 557999999999999963 23467999643322 2333 7899999999888654332 112
Q ss_pred ------hHHHHHHHHHHHHHHHhh
Q psy3897 217 ------SFEDARACIDLILWKLLS 234 (240)
Q Consensus 217 ------A~eDA~at~~L~~~~l~~ 234 (240)
|..||.++.+|+.....+
T Consensus 163 ~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 163 RDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899888887755543
No 38
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.50 E-value=0.018 Score=57.97 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=91.8
Q ss_pred CCcEEEEEEeecCCC----C---CccEEEEEEEEcCCcE--EEEEEEcCCCccccccee---------cCCCCHHhhccC
Q psy3897 77 GYGVYALDTEMVYTV----H---GLEVARVTVVNVDGRL--IYNTLVKPDCEIIDYNTK---------YSGISAKDFIRN 138 (240)
Q Consensus 77 ~~~~valD~E~tg~~----~---g~ei~~v~vv~~~g~~--~~d~lVkP~~~I~~~~t~---------~~GIt~edl~~a 138 (240)
.-++++||+|+..-. + ..+|+.|+..|..+.. +|+.+-.|...+.++... -..+..+.+.+.
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 186 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKI 186 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCe
Confidence 468999999986522 1 2379999999986654 344445454433333321 122344433332
Q ss_pred -----CCCCHHHHHHHHHhhhc--CCcEEEEEch-HHHHHHHhc----cC------------------------------
Q psy3897 139 -----PYKTLKDVQNDLMGFVS--KDSIIVGHGL-ENDLRALKL----IH------------------------------ 176 (240)
Q Consensus 139 -----~~~~~~ev~~~l~~~i~--~~~iLVGH~~-~~Dl~~L~~----~~------------------------------ 176 (240)
+. -.+++..|.+++. .-.||+|||+ .||+.+|.. .+
T Consensus 187 ~v~~f~s--E~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~ 264 (903)
T 3qex_A 187 IYMPFDN--EKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIIT 264 (903)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEE
T ss_pred EEEEcCC--HHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEE
Confidence 33 6788888888885 4579999997 679998732 00
Q ss_pred --CC-eeeccccCcccCC-CCCCccHHHHHHHHcCCCCCCCCCC----------------hHHHHHHHHHHHHH
Q psy3897 177 --SN-IIDTSVLFPHSFG-LPYRRSLKSIVSQLLHQSIQSGTHD----------------SFEDARACIDLILW 230 (240)
Q Consensus 177 --~~-~iDT~~l~~~~~~-~~~~~sL~~L~~~~L~~~iq~~~H~----------------A~eDA~at~~L~~~ 230 (240)
.+ ++|+..+.+.... ....++|+.+|+.+||.....- +. .+.||..+++|+.+
T Consensus 265 i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~-~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 265 LFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKY-DGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp ETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCC-SSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCcccc-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 01 3454444443111 1225799999999998654321 11 15788889888765
No 39
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.013 Score=59.14 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCcEEEEEEeecCCC-----CC-ccEEEEEEE-EcCCcE---EEEEE-EcCCCcccccceecCCCCHHhhccCCCCCHHH
Q psy3897 77 GYGVYALDTEMVYTV-----HG-LEVARVTVV-NVDGRL---IYNTL-VKPDCEIIDYNTKYSGISAKDFIRNPYKTLKD 145 (240)
Q Consensus 77 ~~~~valD~E~tg~~-----~g-~ei~~v~vv-~~~g~~---~~d~l-VkP~~~I~~~~t~~~GIt~edl~~a~~~~~~e 145 (240)
+.++++||+||.+.. +. ++|+.|+.+ ..+|.. .-..| +.+..++ ....+...+. -.+
T Consensus 248 plrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~----------~~~~V~~~~s--E~e 315 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI----------TGSMIFSHAT--EEE 315 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCB----------TTBEEEEESS--HHH
T ss_pred CceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCC----------CCCeEEECCC--HHH
Confidence 457999999998532 11 479999864 445521 11111 2222221 1223444455 688
Q ss_pred HHHHHHhhhc--CCcEEEEEch-HHHHHHHh
Q psy3897 146 VQNDLMGFVS--KDSIIVGHGL-ENDLRALK 173 (240)
Q Consensus 146 v~~~l~~~i~--~~~iLVGH~~-~~Dl~~L~ 173 (240)
++..|.+++. .-.||+|||+ .||+.+|.
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~ 346 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLL 346 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHH
Confidence 8899888884 2579999998 68999984
No 40
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.39 E-value=0.0053 Score=57.96 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred cCCcEEEEEchHHHHHHHhc-------------------cCCCeeeccccCccc--CCCCCCccHHHHHHHHcCCC----
Q psy3897 155 SKDSIIVGHGLENDLRALKL-------------------IHSNIIDTSVLFPHS--FGLPYRRSLKSIVSQLLHQS---- 209 (240)
Q Consensus 155 ~~~~iLVGH~~~~Dl~~L~~-------------------~~~~~iDT~~l~~~~--~~~~~~~sL~~L~~~~L~~~---- 209 (240)
..+.+|||||.-.|+.+|-. ..|.++||-.|.... .......+|..|.+. |+..
T Consensus 274 ~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~-l~~~~~~~ 352 (507)
T 3d45_A 274 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKR-LKETPFDP 352 (507)
T ss_dssp HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHH-TTSTTCCC
T ss_pred hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHH-HhccCCCC
Confidence 35899999999999998753 246799998776542 111113589999974 6521
Q ss_pred --C------------CCCCCChHHHHHHHHHHHHHHHh
Q psy3897 210 --I------------QSGTHDSFEDARACIDLILWKLL 233 (240)
Q Consensus 210 --i------------q~~~H~A~eDA~at~~L~~~~l~ 233 (240)
| .+..|.|-.||+.|+.+|.++..
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~ 390 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 0 11159999999999999987654
No 41
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=95.53 E-value=0.16 Score=52.67 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=82.9
Q ss_pred CCCcEEEEEEeecCCC-----------CCccEEEEEEE-EcCC-cEEEEEEEcCCC---cccccce--ecCCCCHHhhcc
Q psy3897 76 NGYGVYALDTEMVYTV-----------HGLEVARVTVV-NVDG-RLIYNTLVKPDC---EIIDYNT--KYSGISAKDFIR 137 (240)
Q Consensus 76 ~~~~~valD~E~tg~~-----------~g~ei~~v~vv-~~~g-~~~~d~lVkP~~---~I~~~~t--~~~GIt~edl~~ 137 (240)
.+.++++||+||++.. ..++|+.|+.+ ...| ......+|.+.+ .+.++.. +-.|+....+..
T Consensus 318 P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 318 PAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp CCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 4568999999998541 12469999864 3222 112222222111 1111110 000111111333
Q ss_pred CCCCCHHHHHHHHHhhhcC--CcEEEEEch-HHHHHHHhcc----C----C-----------------------------
Q psy3897 138 NPYKTLKDVQNDLMGFVSK--DSIIVGHGL-ENDLRALKLI----H----S----------------------------- 177 (240)
Q Consensus 138 a~~~~~~ev~~~l~~~i~~--~~iLVGH~~-~~Dl~~L~~~----~----~----------------------------- 177 (240)
... -.+++..|.+++.. -.||||||+ .||+.+|..- + +
T Consensus 398 ~~s--E~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i 475 (1193)
T 2gv9_A 398 FDS--EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKV 475 (1193)
T ss_dssp ESS--HHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEE
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEE
Confidence 344 67888888888852 459999997 6799987521 0 0
Q ss_pred ---CeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCC-------------------hHHHHHHHHHHHHHH
Q psy3897 178 ---NIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHD-------------------SFEDARACIDLILWK 231 (240)
Q Consensus 178 ---~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~-------------------A~eDA~at~~L~~~~ 231 (240)
-.+|+..+...... -..++|+.+|+.+||.....-.+. .+.||+.+++|+.+.
T Consensus 476 ~GRv~lDl~~~~~~~~k-l~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 476 NGMVNIDMYGIITDKIK-LSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TTBEEEEHHHHHTTTCC-CSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEeehHHHHHHHHhc-cCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 02344433322222 225799999998899654321111 246888888887754
No 42
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=88.47 E-value=1.4 Score=42.00 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=40.4
Q ss_pred CCcEEEEEEeecCCCCCccEEEEEEEEcCCcEEEEEEEcCCCcccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhcC
Q psy3897 77 GYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSK 156 (240)
Q Consensus 77 ~~~~valD~E~tg~~~g~ei~~v~vv~~~g~~~~d~lVkP~~~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~~ 156 (240)
+++++++|+||+.-.....+..+++.+......|. | ... +.+..+.+.+ .
T Consensus 5 ~~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~-----------------~--------~~~--l~~fi~~~~~---~ 54 (575)
T 2py5_A 5 PRKMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYK-----------------I--------GNS--LDEFMAWVLK---V 54 (575)
T ss_dssp CCCEEEEEEEECCBTTBCCEEEEEEEESSCTTCEE-----------------E--------ESC--HHHHHHHHHH---H
T ss_pred cceEEEEEEEeecCCCCCceEEEEEEeCCceEEEE-----------------e--------chh--HHHHHHHHHH---c
Confidence 35799999998543222357777776642211111 0 011 4444444332 3
Q ss_pred CcEEEEEchHHHHHHHhc
Q psy3897 157 DSIIVGHGLENDLRALKL 174 (240)
Q Consensus 157 ~~iLVGH~~~~Dl~~L~~ 174 (240)
+.++++||+.||+.+|-.
T Consensus 55 ~~~i~~hNl~FD~~~l~~ 72 (575)
T 2py5_A 55 QADLYFHNLKFAGAFIIN 72 (575)
T ss_dssp CCEEEETTHHHHHHHHHH
T ss_pred CCEEEEEChhhhHHHHHH
Confidence 578999999999999753
No 43
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=84.10 E-value=1.2 Score=37.19 Aligned_cols=133 Identities=12% Similarity=0.178 Sum_probs=90.0
Q ss_pred CcEEEEEEeecCCCCCccEEEEEEEEcCCcEEEEEEEcCCC--cccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhc
Q psy3897 78 YGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVS 155 (240)
Q Consensus 78 ~~~valD~E~tg~~~g~ei~~v~vv~~~g~~~~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~ 155 (240)
..-..||+| ++-.+.+++++.-.+..-....|-+|.. ...+....-|||--.||.++.+- +...+...+.
T Consensus 57 ~~ttWiDIE----G~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPG----L~S~vi~~LP 128 (243)
T 3q7c_A 57 NAKTWMDIE----GRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG----LTSAVIDALP 128 (243)
T ss_dssp TSCCEEEEE----SCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTT----HHHHHHHHSC
T ss_pred CCCeEEecC----CCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCc----hHHHHHHhCC
Confidence 345789999 4445788899998765566778888865 56666777899999999988663 5777888887
Q ss_pred CCcEEEEEchHHHHHHHhccCC----Ceeeccc------cCcccCCCCCCccHHHHHHHHcCCCCCC---------CCCC
Q psy3897 156 KDSIIVGHGLENDLRALKLIHS----NIIDTSV------LFPHSFGLPYRRSLKSIVSQLLHQSIQS---------GTHD 216 (240)
Q Consensus 156 ~~~iLVGH~~~~Dl~~L~~~~~----~~iDT~~------l~~~~~~~~~~~sL~~L~~~~L~~~iq~---------~~H~ 216 (240)
.+-||-+.+ .-|++-|=..|. ++||... .|..... -....||..+-|+.+.. .+|.
T Consensus 129 ~nMVlT~QG-sDDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VW----d~f~~LC~~H~GvVv~KKKkg~~~s~~PHC 203 (243)
T 3q7c_A 129 RNMVITCQG-SDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVW----DQYKDLCHMHTGVVVEKKKRGGKEEITPHC 203 (243)
T ss_dssp TTCEEEESS-HHHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHH----HHHGGGCCCBCSCEECCCSSSSCCEECCCC
T ss_pred cCcEEEeeC-hHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHH----HHHHHHHHhcCceEEeccccCCCCCCCchH
Confidence 666666666 667777766554 5899852 3332210 12445565555544431 2799
Q ss_pred hHHHHHH
Q psy3897 217 SFEDARA 223 (240)
Q Consensus 217 A~eDA~a 223 (240)
|+=|+..
T Consensus 204 ALLDCIM 210 (243)
T 3q7c_A 204 ALMDCIM 210 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 44
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=76.41 E-value=2.7 Score=38.80 Aligned_cols=133 Identities=12% Similarity=0.178 Sum_probs=89.7
Q ss_pred CcEEEEEEeecCCCCCccEEEEEEEEcCCcEEEEEEEcCCC--cccccceecCCCCHHhhccCCCCCHHHHHHHHHhhhc
Q psy3897 78 YGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDC--EIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVS 155 (240)
Q Consensus 78 ~~~valD~E~tg~~~g~ei~~v~vv~~~g~~~~d~lVkP~~--~I~~~~t~~~GIt~edl~~a~~~~~~ev~~~l~~~i~ 155 (240)
..-..+|+| .+-.+.+++++.-.+..-.++.|-+|.. ...+....-|||--.||.++.+- ....+...+.
T Consensus 391 ~~ttWiDIE----G~p~DPVE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPG----L~S~vi~~LP 462 (577)
T 3mwp_A 391 NAKTWMDIE----GRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG----LTSAVIDALP 462 (577)
T ss_dssp TSCEEEEEE----SCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTT----HHHHHHHHSC
T ss_pred CCCeEEecC----CCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCc----hHHHHHHhCC
Confidence 345789999 4445778899998766666788888865 56666778899999999998663 5677888886
Q ss_pred CCcEEEEEchHHHHHHHhccCC----Ceeeccc------cCcccCCCCCCccHHHHHHHHcCCCCCC---------CCCC
Q psy3897 156 KDSIIVGHGLENDLRALKLIHS----NIIDTSV------LFPHSFGLPYRRSLKSIVSQLLHQSIQS---------GTHD 216 (240)
Q Consensus 156 ~~~iLVGH~~~~Dl~~L~~~~~----~~iDT~~------l~~~~~~~~~~~sL~~L~~~~L~~~iq~---------~~H~ 216 (240)
.+-|+-+.+ .-|++-|=..|. ++||... .|..... -....||..+-|+.+.. .+|.
T Consensus 463 ~~mV~T~QG-sdDI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW----~~~~~LC~~H~GiVv~kKKkg~~~~~~pHC 537 (577)
T 3mwp_A 463 RNMVITCQG-SDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVW----DQYKDLCHMHTGVVVEKKKRGGKEEITPHC 537 (577)
T ss_dssp TTCEEEESS-HHHHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHH----HHHGGGCCCBCSCEEECC-----EEECCCC
T ss_pred cCcEEEeeC-hHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHH----HHHHHHHHhcCceEEecccCCCCCCCCchH
Confidence 566666665 667777766554 5788752 3332210 13445555545544321 2799
Q ss_pred hHHHHHH
Q psy3897 217 SFEDARA 223 (240)
Q Consensus 217 A~eDA~a 223 (240)
|+=|+..
T Consensus 538 ALlDCiM 544 (577)
T 3mwp_A 538 ALMDCIM 544 (577)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 45
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=64.22 E-value=0.75 Score=46.90 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCcEEEEEchHHHHHHHhcc------CCCeeecccc
Q psy3897 156 KDSIIVGHGLENDLRALKLI------HSNIIDTSVL 185 (240)
Q Consensus 156 ~~~iLVGH~~~~Dl~~L~~~------~~~~iDT~~l 185 (240)
..+|+||||+.||...++.. ..+++||+-|
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSL 228 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSM 228 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHH
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhh
Confidence 47999999999999988763 2478999753
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=32.27 E-value=23 Score=32.22 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.1
Q ss_pred CCcEEEEEEeecCCC
Q psy3897 77 GYGVYALDTEMVYTV 91 (240)
Q Consensus 77 ~~~~valD~E~tg~~ 91 (240)
..+|||+|+|++|+.
T Consensus 21 ~~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 21 EADFFAIDGEFSGIS 35 (430)
T ss_dssp HCSEEEEEEEESCSC
T ss_pred cCCEEEEeeeecccc
Confidence 458999999999985
No 47
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=28.59 E-value=29 Score=32.33 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=13.1
Q ss_pred CCcEEEEEEeecCCC
Q psy3897 77 GYGVYALDTEMVYTV 91 (240)
Q Consensus 77 ~~~~valD~E~tg~~ 91 (240)
..+|||+|+|++|..
T Consensus 23 ~~~fvaiD~Ef~Gi~ 37 (507)
T 3d45_A 23 EADFFAIDGEFSGIS 37 (507)
T ss_dssp HCSEEEEEEEESCSC
T ss_pred cCCEEEEeeeccCcC
Confidence 457999999999985
No 48
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=25.39 E-value=69 Score=31.75 Aligned_cols=76 Identities=8% Similarity=-0.169 Sum_probs=48.2
Q ss_pred HHHHhhhcCCcEEEEEchHHHHHHHhcc---CCCeeeccccCcccCCCCCCccHHHHHHHHcCCCCCCCCCChHHHHHHH
Q psy3897 148 NDLMGFVSKDSIIVGHGLENDLRALKLI---HSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARAC 224 (240)
Q Consensus 148 ~~l~~~i~~~~iLVGH~~~~Dl~~L~~~---~~~~iDT~~l~~~~~~~~~~~sL~~L~~~~L~~~iq~~~H~A~eDA~at 224 (240)
+.|..++....+ |+.+|+.+|... ...+.||+...--.. +. +++|+.|+..| |... ... ..+||.++
T Consensus 340 ~~Lk~lLed~~i----n~K~d~~~L~~~Gi~~~~~~Dt~laayLl~-p~-~~~l~~l~~~~-gk~~-~~~--ya~da~~~ 409 (832)
T 1bgx_T 340 KALRDLKEARGL----LAKDLSVLALREGLGLPPGDDPMLLAYLLD-PS-NTTPEGVARRY-GGEW-TEE--AGERAALS 409 (832)
T ss_dssp HHHHHCSSBCBT----THHHHHHHHHHHTCCCCBCCCHHHHHHHHC-TT-CCSTTHHHHHH-SCCC-CSS--HHHHHHHH
T ss_pred HHHHHHHhCCCC----ChHHHHHHHHHcCCccCcccCHHHHHHHcC-CC-CCCHHHHHHHh-CCCc-hHH--HHHHHHHH
Confidence 346777754445 999999999752 225579986432221 11 56899999875 6421 111 23799999
Q ss_pred HHHHHHHHh
Q psy3897 225 IDLILWKLL 233 (240)
Q Consensus 225 ~~L~~~~l~ 233 (240)
.+|+.....
T Consensus 410 ~~l~~~l~~ 418 (832)
T 1bgx_T 410 ERLFANLWG 418 (832)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776543
No 49
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=24.74 E-value=34 Score=24.54 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=15.0
Q ss_pred EEEEEEEcCCcEEEEE
Q psy3897 97 ARVTVVNVDGRLIYNT 112 (240)
Q Consensus 97 ~~v~vv~~~g~~~~d~ 112 (240)
+||+++|.+|.+++|+
T Consensus 49 ~rItiiD~~G~Vl~dS 64 (122)
T 3cwf_A 49 VSASVIDTDGKVLYGS 64 (122)
T ss_dssp CEEEEEETTSCEEEET
T ss_pred cEEEEECCCCcEEEeC
Confidence 5899999999999998
No 50
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26
Probab=23.95 E-value=60 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEEchHHHHHH
Q psy3897 143 LKDVQNDLMGFVSKDSIIVGHGLENDLRA 171 (240)
Q Consensus 143 ~~ev~~~l~~~i~~~~iLVGH~~~~Dl~~ 171 (240)
+.+..+.+.+.+++..+||||+..-=+..
T Consensus 61 ~~~~~~~l~~~l~~~~~lvGhS~Gg~va~ 89 (258)
T 1m33_A 61 LADMAEAVLQQAPDKAIWLGWSLGGLVAS 89 (258)
T ss_dssp HHHHHHHHHTTSCSSEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEECHHHHHHH
Confidence 77777888888877789999997654443
Done!