RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3897
(240 letters)
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein,
ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 75.0 bits (183), Expect = 2e-17
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 80 VYALDTEMVYTVHGLE--VARVTVVNVDGRLIYNTLVKPDCEIIDYNTKYSGISAKDFIR 137
V A+D EMV E +AR ++VNV G ++Y+ ++P+ EI DY T+ SG++
Sbjct: 2 VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT--PQHM 59
Query: 138 NPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKL------IHSNIIDTSVLFPHSFG 191
+ +++ + K ++VGH L++D +ALK I+ D +
Sbjct: 60 VGATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 118
Query: 192 LPYRRSLKSIVSQLLHQSIQSGT--HDSFEDARACIDLILWKLLSDFRYNH 240
R SL+ + +LLH+SIQ+ H S EDARA ++ L+++ R
Sbjct: 119 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATME--LYQISQRIRARR 167
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 226
Score = 37.3 bits (85), Expect = 8e-04
Identities = 10/151 (6%), Positives = 31/151 (20%), Gaps = 24/151 (15%)
Query: 110 YNTLVKPDCEIIDYNTKYSGISAKDFIRNP----YKTLKDVQNDLMGFVSKDSIIVGHGL 165
+ + P ++ +G+S + L + + + +V H
Sbjct: 59 LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNG 118
Query: 166 ENDLRA----------LKLIHSNIIDTSVL---------FPHSFGLPYRRSLKSIVSQLL 206
+ + S + + L
Sbjct: 119 DRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 178
Query: 207 HQSIQSGTHDSFEDARACIDLILWKLLSDFR 237
+ + +H + D + +
Sbjct: 179 YWQAPTDSHTAEGDVLTLLSI-CQWKPQALL 208
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 35.7 bits (81), Expect = 0.002
Identities = 22/184 (11%), Positives = 57/184 (30%), Gaps = 33/184 (17%)
Query: 82 ALDTEMVYTVHGL--------EVARVTVVNVDGRLI--YNTLVKPDC--EIIDYNTKYSG 129
+D E E V + + + V+P+ ++ D+ +G
Sbjct: 10 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 69
Query: 130 ISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHG--------------LENDLRALKLI 175
I+ R V ++ ++ + + L + +L
Sbjct: 70 ITQDQVDRADTF--PQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 127
Query: 176 HSNI----IDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWK 231
+ I+ + + + +P ++ +I+ + L H +D++ I +
Sbjct: 128 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIAR-IAVR 186
Query: 232 LLSD 235
+L D
Sbjct: 187 MLQD 190
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 33.4 bits (76), Expect = 0.015
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 133 KDFIRNPYKTLKDVQNDLMGFVSKDSII-VGHGLENDLRALKLIH----SNIIDTSVLFP 187
K D DL F + + VG +E DL L+ H N I+ L
Sbjct: 83 LCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAA 142
Query: 188 HSFGLPYRR--SLKSIVSQLLHQSI 210
+ G + + ++L +
Sbjct: 143 EARGTLVLEFLGTRELAHRVLWSDL 167
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 33.0 bits (74), Expect = 0.021
Identities = 16/151 (10%), Positives = 37/151 (24%), Gaps = 24/151 (15%)
Query: 110 YNTLVKPDCEIIDYNTKYSGISAKDFIRNP----YKTLKDVQNDLMGFVSKDSIIVGH-G 164
+ P+ ++ +G+S++ R + + + +V H G
Sbjct: 60 LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNG 119
Query: 165 LENDLRALK--------------LIHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSI 210
+ D L + + L R + L
Sbjct: 120 FDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY 179
Query: 211 ----QSGTHDSFEDARACIDLILWKLLSDFR 237
S H + D + + L ++
Sbjct: 180 FRAEPSAAHSAEGDVHTLLLIFL-HRAAELL 209
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 27.6 bits (60), Expect = 1.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 128 SGISAKDFIRNPYKTLKDVQNDLMGFVSK--DSIIVGHGLENDLRALKLIH 176
+G +A ++P T V++ L +K DS G GL N A + H
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLINVQAAAQHHH 278
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 26.1 bits (57), Expect = 4.0
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 75 PNGYGV--YALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLVKPDCEII 121
P + + E Y ++G ARVT+V+ GR + + + D
Sbjct: 81 PGAIRELHWHKEAEWAYMIYG--SARVTIVDEKGRSFIDDVGEGDLWYF 127
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the
epsilon subunit of DNA polymerase III {Escherichia coli
[TaxId: 562]}
Length = 174
Score = 25.7 bits (55), Expect = 4.2
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 175 IHSNIIDTSVLFPHSFGLPYRRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLIL 229
+ D+ + F R SL ++ ++ + + H + DA+ ++ L
Sbjct: 117 TFCKVTDSLAVARKMFP-GKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYL 170
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 3/125 (2%)
Query: 115 KPDCEIIDYNTKYSGISAKDFIRNPYKTLKDVQNDLMGFVSKDSIIVGHGLENDLRALKL 174
+ + + R K LK V +S L + +
Sbjct: 73 GIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 132
Query: 175 IHSNIIDTSVLFPHSFGLPY--RRSLKSIVSQLLHQSIQSGTHDSFEDARACIDLILWKL 232
+ S + + L + H + D +L +
Sbjct: 133 KRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAEL-FCGI 191
Query: 233 LSDFR 237
++ ++
Sbjct: 192 VNRWK 196
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 24.4 bits (53), Expect = 7.2
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 201 IVSQLLHQSIQSGTHDSFEDARACIDLILWKLLSDFRYN 239
I S ++++ + S +DAR I+ + +L+ ++
Sbjct: 5 IASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKE 43
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 25.4 bits (54), Expect = 7.4
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 171 ALKLIHSNIIDTSVLFPHSFGLP 193
+ L + +LF H+ G+
Sbjct: 290 LVDLARKGELGEKILFIHTGGIS 312
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 25.1 bits (53), Expect = 9.0
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 55 GGINGPLEGYVKTKPRKSPPPNGYGVYALDTEMVYTVHGLEVARVTVVNVDGRLIYNTLV 114
G P + +++ P + +L + + VT + G+ ++ T +
Sbjct: 240 GNFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITP-KEMSVTYIEASGKSLFKTKL 298
Query: 115 KP 116
Sbjct: 299 PR 300
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,930
Number of extensions: 40914
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 13
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)