BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3899
(923 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/193 (58%), Positives = 149/193 (77%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
+ VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQ
Sbjct: 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GHL VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT L
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709
MW+AY+ S+DPTRLL+TF S + DK H N ALHWA+ A N I+ L+ ++++
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 710 NAQGLTPFMLLEE 722
N +G + L ++
Sbjct: 207 NIKGESALDLAKQ 219
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 123/162 (75%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+KY+IS+GAIVD +GGDL +TPLHWATRQGHL VV L+++GADP+L+D EG +CIH AA
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+ S+DPTRLL+TF S + DK H
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177
Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 162
N ALHWA+ A N I+ L+ ++++ N +G + L ++
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
+ GQDV+ D +T L WAA + ++ + ++ V+ + T LHWA
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
G+ + LL++ GA+ + +G + + A Q + ++ +L
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRN 84
AT+ G + L++ G D D E T +H AA +V Y ++KG V+ L
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 144
T L W A + L L+ +GA ++ D G +H A + + L++
Sbjct: 76 NSTPLHW-ATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 145 SLEIPNAQGLTPFM 158
+++ + G+TP M
Sbjct: 134 DVDMMDQNGMTPLM 147
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRN 644
AT+ G + L++ G D D E T +H AA +V Y ++KG V+ L
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 704
T L W A + L L+ +GA ++ D G +H A + + L++
Sbjct: 76 NSTPLHW-ATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 705 SLEIPNAQGLTPFM 718
+++ + G+TP M
Sbjct: 134 DVDMMDQNGMTPLM 147
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 46 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 105
T +D + I +A Q+G LV G +V D+ +T L W+A +D +
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYY 61
Query: 106 ITFGASTTIQDKIHGNV---ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
I+ GA I D++ G++ LHWA + + L+ + + + + +G + L
Sbjct: 62 ISKGA---IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 606 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 665
T +D + I +A Q+G LV G +V D+ +T L W+A +D +
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYY 61
Query: 666 ITFGASTTIQDKIHGNV---ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
I+ GA I D++ G++ LHWA + + L+ + + + + +G + L
Sbjct: 62 ISKGA---IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 102 bits (254), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G DVN DS+ T LH+AA EI+K IS+GA V+A D + TPLH+A ++G
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
H + V LLI GAD DS+G T +H AA+ GH IV L++KG +VN D +G T L
Sbjct: 82 HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
AA N + +K I GA V+A D + TPLH+A ++GH + V LLI GAD DS+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH IV L++KG +VN +D +G T L ++A K + +LLI+ GA
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-KEGHKEIVKLLISKGAD 128
Query: 672 TTIQD 676
D
Sbjct: 129 VNTSD 133
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K I GA V+A D + TPLH+A ++GH + V LLI GAD DS+G T +H AA
Sbjct: 20 VKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 78
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
+ GH IV L++KG +VN +D +G T L ++A K + +LLI+ GA D
Sbjct: 79 KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-KEGHKEIVKLLISKGADVNTSD 133
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K IS+GA V+A D + TPLH+A ++GH + V LLI GAD DS+G T +H AA
Sbjct: 53 VKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH IV L++KG +VN D +G T L
Sbjct: 112 KEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G DVN DS+ T LH+AA EI+K IS+GA V+A D + TPLH+A ++G
Sbjct: 56 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEG 114
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
H + V LLI GAD DS+G T + A + G+ IV L +G
Sbjct: 115 HKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A G+ D V LI++GAD DS+G T +H AA+ GH IV L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L ++A K + +LLI+ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAA-KEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 146 LEIPNAQGLTPFMLLEEN 163
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A G+ D V LI++GAD DS+G T +H AA+ GH IV L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L ++A K + +LLI+ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAA-KEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K IS+GA V+A D + TPLH+A ++GH + V LLI GAD DS+G T + A
Sbjct: 86 VKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 61 QFGHTRIVAYLVAKG 75
+ G+ IV L +G
Sbjct: 145 EHGNEEIVKLLEKQG 159
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 99.4 bits (246), Expect = 8e-21, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G DVN DS+ T LH AA N E++K IS+GA V+A D + TPLH A G
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
H + V LLI GAD DS+G T +H AA+ GH +V L++KG +VN D +G T L
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
AA N + +K I GA V+A D + TPLH A GH + V LLI GAD DS+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L++KG +VN +D +G T L +A + +LLI+ GA
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK-EVVKLLISKGAD 128
Query: 672 TTIQD 676
D
Sbjct: 129 VNTSD 133
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K I GA V+A D + TPLH A GH + V LLI GAD DS+G T +H AA
Sbjct: 20 VKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
+ GH +V L++KG +VN +D +G T L +A + +LLI+ GA D
Sbjct: 79 ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK-EVVKLLISKGADVNTSD 133
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K IS+GA V+A D + TPLH A GH + V LLI GAD DS+G T +H AA
Sbjct: 53 VKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH +V L++KG +VN D +G T L
Sbjct: 112 ENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G DVN DS+ T LH AA N E++K IS+GA V+A D + TPLH A G
Sbjct: 56 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENG 114
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
H + V LLI GAD DS+G T + A + G+ +V L +G
Sbjct: 115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A G+ D V LI++GAD DS+G T +H AA+ GH +V L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L +A + +LLI+ GA +D G LH A + + L+S +
Sbjct: 71 RTPLHHAAENGHK-EVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 146 LEIPNAQGLTPFMLLEEN 163
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A G+ D V LI++GAD DS+G T +H AA+ GH +V L++KG +VN +D +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L +A + +LLI+ GA +D G LH A + + L+S +
Sbjct: 71 RTPLHHAAENGHK-EVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
+ ++ G TP L E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K IS+GA V+A D + TPLH A GH + V LLI GAD DS+G T + A
Sbjct: 86 VKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 61 QFGHTRIVAYLVAKG 75
+ G+ +V L +G
Sbjct: 145 EHGNEEVVKLLEKQG 159
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
LH AA ++I + GA +D D Q TPL A HL++V LI+ GA
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSA-YKVFSLDPTRLLI 666
D+EGSTC+H AA+ GH +V YL++ G ++VN QD G T ++W+ YK +D +LL+
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK--HVDLVKLLL 131
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 717
+ G+ I+D N+ LHWA ++ L++ L N G +P
Sbjct: 132 SKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Score = 89.7 bits (221), Expect = 6e-18, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
+ GA +D D Q TPL A HL++V LI+ GA D+EGSTC+H AA+ G
Sbjct: 30 LVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88
Query: 64 HTRIVAYLVAKG-INVNLQDRNGMTALMWSA-YKVFSLDPTRLLITFGASTTIQDKIHGN 121
H +V YL++ G ++VN QD G T ++W+ YK +D +LL++ G+ I+D N
Sbjct: 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK--HVDLVKLLLSKGSDINIRDN-EEN 145
Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157
+ LHWA ++ L++ L N G +P
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
Query: 529 YQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
+ V+AG +++ + T L AA NN +E +KY I GA+VD + +T LH A +
Sbjct: 28 HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE-GSTCLHLAAK 86
Query: 589 QGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
+GH + V L+ +G D D G T + A ++ H +V L++KG ++N++D
Sbjct: 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI 146
Query: 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 707
L W+A+ +D +L+ + IHG+ LH A + + +S S +
Sbjct: 147 CLHWAAFS-GCVDIAEILLAAKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDVT 204
Query: 708 IPNAQGLTPF 717
+ N +G TP
Sbjct: 205 LKNKEGETPL 214
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++Y +S G + D TP+ WAT H+D V LL+ G+D + D+E + C+H AA
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
G I L+A +++ + IHG
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVN-----------------------------------IHG 177
Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157
+ LH A + + +S S + + N +G TP
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
+Y DVN D T + WA ++++K +S+G+ ++ I + + LHWA
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAA 152
Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
G +D +L+ D ++ G + +H AA+ V +++ +V L+++ G T
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Query: 648 AL--------MWSAYKV 656
L +WSA ++
Sbjct: 213 PLQCASLNSQVWSALQM 229
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
I GD +PLH A R+ D VVL + +D TL + EG T + A+
Sbjct: 175 IHGD---SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G D N DS+ T LH+AA N EI+K +S+GA +A D + TPLH+A G
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
H + V LL+ GADP DS+G T +H AA+ GH IV L++KG + N D +G T L
Sbjct: 82 HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
AA N + +K + GA +A D + TPLH+A GH + V LL+ GADP DS+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH IV L++KG + N +D +G T L ++A + +LL++ GA
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK-EIVKLLLSKGAD 128
Query: 672 TTIQD 676
D
Sbjct: 129 PNTSD 133
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + GA +A D + TPLH+A GH + V LL+ GADP DS+G T +H AA
Sbjct: 20 VKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 78
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
+ GH IV L++KG + N +D +G T L ++A + +LL++ GA D
Sbjct: 79 ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK-EIVKLLLSKGADPNTSD 133
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G D N DS+ T LH+AA N EI+K +S+GA +A D + TPLH+A G
Sbjct: 56 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENG 114
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
H + V LL+ GADP DS+G T + A + G+ IV L +G
Sbjct: 115 HKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +S+GA +A D + TPLH+A GH + V LL+ GADP DS+G T +H AA
Sbjct: 53 VKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH IV L++KG + N D +G T L
Sbjct: 112 ENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A G+ D V L+++GADP DS+G T +H AA+ GH IV L++KG + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L ++A + +LL++ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAAENGHK-EIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 146 LEIPNAQGLTPFMLLEEN 163
++ G TP L E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A G+ D V L+++GADP DS+G T +H AA+ GH IV L++KG + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L ++A + +LL++ GA +D G LH+A + + L+S +
Sbjct: 71 RTPLHYAAENGHK-EIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
++ G TP L E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +S+GA +A D + TPLH+A GH + V LL+ GADP DS+G T + A
Sbjct: 86 VKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 61 QFGHTRIVAYLVAKG 75
+ G+ IV L +G
Sbjct: 145 EHGNEEIVKLLEKQG 159
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 95.5 bits (236), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G DVN DS+ T LH AA N E++K +SQGA +A D + TPLH A G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
H + V LL+ GADP DS+G T +H AA+ GH +V L+++G + N D +G T L
Sbjct: 82 HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPL 140
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
AA N + +K + GA V+A D + TPLH A GH + V LL+ GADP DS+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L+++G + N +D +G T L +A + +LL++ GA
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK-EVVKLLLSQGAD 128
Query: 672 TTIQD 676
D
Sbjct: 129 PNTSD 133
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + GA V+A D + TPLH A GH + V LL+ GADP DS+G T +H AA
Sbjct: 20 VKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 78
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
+ GH +V L+++G + N +D +G T L +A + +LL++ GA D
Sbjct: 79 ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK-EVVKLLLSQGADPNTSD 133
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G D N DS+ T LH AA N E++K +SQGA +A D + TPLH A G
Sbjct: 56 LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENG 114
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
H + V LL+ GADP DS+G T + A + G+ +V L +G
Sbjct: 115 HKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +SQGA +A D + TPLH A GH + V LL+ GADP DS+G T +H AA
Sbjct: 53 VKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH +V L+++G + N D +G T L
Sbjct: 112 ENGHKEVVKLLLSQGADPNTSDSDGRTPL 140
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A G+ D V L+++GAD DS+G T +H AA+ GH +V L+++G + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L +A + +LL++ GA +D G LH A + + L+S +
Sbjct: 71 KTPLHLAAENGHK-EVVKLLLSQGADPNAKDS-DGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 146 LEIPNAQGLTPFMLLEEN 163
++ G TP L E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +SQGA +A D + TPLH A GH + V LL+ GADP DS+G T + A
Sbjct: 86 VKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Query: 61 QFGHTRIVAYLVAKG 75
+ G+ +V L +G
Sbjct: 145 EHGNEEVVKLLEKQG 159
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 35/138 (25%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A G+ D V L+++GAD DS+G T +H AA+ GH +V L+++G + N +D +G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T LH A + + L+S +
Sbjct: 71 KTP-----------------------------------LHLAAENGHKEVVKLLLSQGAD 95
Query: 706 LEIPNAQGLTPFMLLEEN 723
++ G TP L EN
Sbjct: 96 PNAKDSDGKTPLHLAAEN 113
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 593
G DVN D++ T LH AA N +EI++ + GA V+A DL TPLH A GHL+
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--SDLTGITPLHLAAATGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++HGAD D++G T +H AA++GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ + GA V+A DL TPLH A GHL+ V +L++HGAD D++G T +H A
Sbjct: 63 VEVLLKNGADVNA--SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
A++GH IV L+ G +VN QD+ G TA
Sbjct: 121 AKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A GHL+ V +L+++GAD D G T +H AA
Sbjct: 30 VRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
GH IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 89 ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA-KYGHLEIVEVLLKHGADVNAQDK 144
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D TPLH A GHL+ V +L+++GAD D G T +H AA
Sbjct: 30 VRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
GH IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 89 ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA-KYGHLEIVEVLLKHGADVNAQDK 144
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DVN D +T LH AA +EI++ + GA V+A D TPLH A + G
Sbjct: 66 LLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TPLHLAAKYG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L++HGAD D G T
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKT 148
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D++G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G+T L +A L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNASDLTGITPLHLAA-ATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D++G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D G+T L +A L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNASDLTGITPLHLAA-ATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 90.1 bits (222), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D+ +T LH AA +EI++ + GA V+AI + +TPLH A GHL+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++HGAD +D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+AI + +TPLH A GHL+ V +L++HGAD +D+ G T +H AA
Sbjct: 63 VEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 122 IMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATR 588
++ G DVN D T LH AA+ +EI++ + GA V+A+ GD TPLH A
Sbjct: 66 LLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD---TPLHLAAI 122
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGST 614
GHL+ V +L++HGAD D G T
Sbjct: 123 MGHLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 90.1 bits (222), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D+ T LH AA + +EI++ + GA VDA TPLH A GHL+
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD MDS+G T +H AA++G+ IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+GH IV L+ G +VN D +GMT L +A K L+ +L+ GA QDK
Sbjct: 89 YWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA-KWGYLEIVEVLLKHGADVNAQDK 144
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+GH IV L+ G +VN D +GMT L +A K L+ +L+ GA QDK
Sbjct: 89 YWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA-KWGYLEIVEVLLKHGADVNAQDK 144
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA VDA TPLH A GHL+ V +L+++GAD MDS+G T +H AA
Sbjct: 63 VEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
++G+ IV L+ G +VN QD+ G TA
Sbjct: 122 KWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DV+ D T LH AA +EI++ + GA V+A+ D TPLH A + G
Sbjct: 66 LLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD-GMTPLHLAAKWG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
+L+ V +L++HGAD D G T
Sbjct: 125 YLEIVEVLLKHGADVNAQDKFGKT 148
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D+ G+T +H AA GH IV L+
Sbjct: 11 GSDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +V+ D G T L +AY L+ +L+ GA D G LH A
Sbjct: 70 GADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D+ G+T +H AA GH IV L+
Sbjct: 11 GSDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +V+ D G T L +AY L+ +L+ GA D G LH A
Sbjct: 70 GADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 89.7 bits (221), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQ 589
+ G DVN D+ +T LH AA++ +EI++ + GA VDA D+ TPLH A
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA--ADVYGFTPLHLAAMT 90
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GHL+ V +L+++GAD D GST +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ I+ GA V+A+ + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILIANGADVNAVD-NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
GH IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE-GHLEIVEVLLKYGADVNAQDK 144
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ I+ GA V+A+ + TPLH A GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILIANGADVNAVD-NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
GH IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE-GHLEIVEVLLKYGADVNAQDK 144
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ + GA VDA D+ TPLH A GHL+ V +L+++GAD D GST +H A
Sbjct: 63 VEVLLKHGADVDA--ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
A GH IV L+ G +VN QD+ G TA
Sbjct: 121 ADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +LI +GAD +D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +V+ D G T L +A L+ +L+ +GA D + G+ LH A +
Sbjct: 70 GADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +LI +GAD +D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +V+ D G T L +A L+ +L+ +GA D + G+ LH A +
Sbjct: 70 GADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 89.7 bits (221), Expect = 7e-18, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 593
G DVN D+ +T LH AA +EI++ + GA V+AI D+ +TPLH A GHL+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAALIGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++HGAD +D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ AT PLH A GHL+ V +L++HGAD +D GST +H AA G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D G T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ + GA V+AI D+ +TPLH A GHL+ V +L++HGAD +D+ G T +H A
Sbjct: 63 VEVLLKHGADVNAI--DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
A GH IV L+ G +VN QD+ G TA
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D+ G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D G T L +A + L+ +L+ GA D G+ LH A +
Sbjct: 70 GADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAVDT-WGDTPLHLAAIMGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATR 588
++ G DVN D T LH AA+ +EI++ + GA V+A+ GD TPLH A
Sbjct: 66 LLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD---TPLHLAAI 122
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGST 614
GHL+ V +L++HGAD D G T
Sbjct: 123 MGHLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 30 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 144
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 30 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 144
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 63 VEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH IV L+ G +VN QD+ G TA
Sbjct: 122 REGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+G
Sbjct: 66 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L++ GAD D G T
Sbjct: 125 HLEIVEVLLKAGADVNAQDKFGKT 148
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D +G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN +D++G T L +A + L+ +L+ GA +DK G LH A +
Sbjct: 70 GADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + G T F
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAF 150
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D +G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN +D++G T L +A + L+ +L+ GA +DK G LH A +
Sbjct: 70 GADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + G T F
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAF 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D+ T LH AA N +EI++ + GA V+A+ TPL A GHL+
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D EG T +H AA FGH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A GHL+ V +L+++GAD +D G T + AA FG
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D G T L +A +F L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAA--MFGHLEIVEVLLKNGADVNAQDK 144
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A GHL+ V +L+++GAD +D G T + AA FG
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D G T L +A +F L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAA--MFGHLEIVEVLLKNGADVNAQDK 144
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A+ TPL A GHL+ V +L+++GAD D EG T +H AA
Sbjct: 63 VEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
FGH IV L+ G +VN QD+ G TA
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
G +VN D GMT L +A +F L+ +L+ GA D + G+ LH A +
Sbjct: 70 GADVNAVDHAGMTPLRLAA--LFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHL 126
Query: 134 VAITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAF 150
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D+ G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 693
G +VN D GMT L +A +F L+ +L+ GA D + G+ LH A +
Sbjct: 70 GADVNAVDHAGMTPLRLAA--LFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHL 126
Query: 694 VAITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAF 150
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQ 589
++ G DVN D +T L AA+ +EI++ + GA V+A D++ TPLH A
Sbjct: 66 LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA--NDMEGHTPLHLAAMF 123
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
GHL+ V +L+++GAD D G T
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKT 148
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.0 bits (214), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AA +EI++ + GA V+A L TPLH A R+GHL+
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD DS G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A L TPLH A R+GHL+ V +L+++GAD DS G T +H AA
Sbjct: 63 VEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH IV L+ G +VN QD+ G TA
Sbjct: 122 KRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA+ G
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAA-KRGHLEIVEVLLKNGADVNAQDK 144
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA+ G
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D +G T L +A K L+ +L+ GA QDK
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLHLAA-KRGHLEIVEVLLKNGADVNAQDK 144
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN +D G+T L +A + L+ +L+ GA D HG LH A +
Sbjct: 70 GADVNAKDSLGVTPLHLAARR-GHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAF 150
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN +D G+T L +A + L+ +L+ GA D HG LH A +
Sbjct: 70 GADVNAKDSLGVTPLHLAARR-GHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAF 150
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 492 NFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHW 551
N DFTGW+ L ++ EV ++ G DVN DS VT LH
Sbjct: 41 NARDFTGWTPLHL--AAHFGHLEIVEV------------LLKNGADVNAKDSLGVTPLHL 86
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDS 610
AA +EI++ + GA V+A D TPLH A ++GHL+ V +L+++GAD D
Sbjct: 87 AARRGHLEIVEVLLKNGADVNA--SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Query: 611 EGST 614
G T
Sbjct: 145 FGKT 148
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G T
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 51 VEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMT 87
+ GH IV L+ G +VN QD+ G T
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+G
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREG 112
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
HL+ V +L++ GAD D G T A + GH I L
Sbjct: 113 HLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 146 LEIPNAQGLTPFML 159
+ + G TPF L
Sbjct: 127 VNAQDKFGKTPFDL 140
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 706 LEIPNAQGLTPFML 719
+ + G TPF L
Sbjct: 127 VNAQDKFGKTPFDL 140
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A R+GHL+ V +L++ GAD D G T A
Sbjct: 84 VEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 61 QFGHTRIVAYL 71
+ GH I L
Sbjct: 143 REGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + T LH AA +EI++ + GA V+A D TPLH A R+GHL+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
V +L++ GAD D +G T +H AA+ GH IV L+ G +VN QD+ G T
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+ GH IV L+ G +VN +D++G T L +A + L+ +L+ GA QDK
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAQDK 132
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A R+GHL+ V +L++ GAD D +G T +H AA
Sbjct: 51 VEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMT 87
+ GH IV L+ G +VN QD+ G T
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 146 LEIPNAQGLTPFMLLEEN 163
+ + G TPF L +N
Sbjct: 127 VNAQDKFGKTPFDLAIDN 144
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN +D++G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L +A + L+ +L+ GA +DK G LH A + + L+ +
Sbjct: 69 YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 706 LEIPNAQGLTPFMLLEEN 723
+ + G TPF L +N
Sbjct: 127 VNAQDKFGKTPFDLAIDN 144
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++AG DVN D + T LH AA +EI++ + GA V+A D TPLH A R+G
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREG 112
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
HL+ V +L++ GAD D G T A G+ I L
Sbjct: 113 HLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A R+GHL+ V +L++ GAD D G T A
Sbjct: 84 VEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 61 QFGHTRIVAYL 71
G+ I L
Sbjct: 143 DNGNEDIAEVL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AAI +EI++ + GA V+A + TPLH A GHL+
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKMGDTPLHLAALYGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A +GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+GH IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA-DAGHLEIVEVLLKYGADVNAQDK 144
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D TPLH A +GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+GH IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA-DAGHLEIVEVLLKYGADVNAQDK 144
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A + TPLH A GHL+ V +L+++GAD D+ G T +H AA
Sbjct: 63 VEVLLKHGADVNA-ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 122 DAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D+ G T L +A L+ +L+ GA D +G LH A A +
Sbjct: 70 GADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D+ G T L +A L+ +L+ GA D +G LH A A +
Sbjct: 70 GADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DVN D T LH AA+ +EI++ + GA V+A TPLH A G
Sbjct: 66 LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD-TYGFTPLHLAADAG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L+++GAD D G T
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKT 148
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D +T LH AA N ++EI++ + GA V+A TPLH A GHL+
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSAGITPLHLAAYDGHLEI 87
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++HGAD D G T +H AA G IV L+ G +VN QD G+TA
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
GQD+ + LL AA E+ + ++ GA V+A D TPLH A G L+
Sbjct: 3 GQDLGK------KLLEAAAAGQDDEV-RILMANGADVNATD-DNGLTPLHLAAANGQLEI 54
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
V +L+++GAD DS G T +H AA GH IV L+ G +VN DR G T L +A
Sbjct: 55 VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL 114
Query: 655 KVFSLDPTRLLITFGASTTIQDKI 678
L+ +L+ GA QD +
Sbjct: 115 S-GQLEIVEVLLKHGADVNAQDAL 137
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D TPLH A G L+ V +L+++GAD DS G T +H AA
Sbjct: 22 VRILMANGADVNATD-DNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAA 80
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
GH IV L+ G +VN DR G T L +A L+ +L+ GA QD +
Sbjct: 81 YDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS-GQLEIVEVLLKHGADVNAQDAL 137
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 13 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 72
A G DL L A G D V +L+ +GAD D G T +H AA G IV L+
Sbjct: 1 AFGQDLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 73 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 132
G +VN D G+T L +AY L+ +L+ GA D+ G LH A +
Sbjct: 60 KNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQ 117
Query: 133 HVAITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + +A GLT F
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAF 142
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
A G DL L A G D V +L+ +GAD D G T +H AA G IV L+
Sbjct: 1 AFGQDLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 633 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 692
G +VN D G+T L +AY L+ +L+ GA D+ G LH A +
Sbjct: 60 KNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQ 117
Query: 693 HVAITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + +A GLT F
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAF 142
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 593
G DVN D+ T LH AA +EI++ + GA V+A+ D +TPLH A ++GHL+
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D+ GST +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A R GHL+ V +L+++GAD +D GST +H AA+ G
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNAQDK 144
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A R GHL+ V +L+++GAD +D GST +H AA+ G
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D G T L +A L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNAQDK 144
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ + GA V+A+ D +TPLH A ++GHL+ V +L+++GAD D+ GST +H A
Sbjct: 63 VEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
A GH IV L+ G +VN QD+ G TA
Sbjct: 121 ADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D+ G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D +G T L +A K L+ +L+ +GA D I G+ LH A +
Sbjct: 70 GADVNALDFSGSTPLHLAA-KRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D+ G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D +G T L +A K L+ +L+ +GA D I G+ LH A +
Sbjct: 70 GADVNALDFSGSTPLHLAA-KRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DVN D T LH AA +EI++ + GA V+A + +TPLH A G
Sbjct: 66 LLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA-DDTIGSTPLHLAADTG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L+++GAD D G T
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKT 148
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AA +EI++ + GA V+A + ATPLH A GHL+
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNYGATPLHLAADNGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L++HGAD D EG T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A L TPLH A + GHL+ V +L+++GAD D+ G+T +H AA
Sbjct: 30 VRILMANGADVNATDW-LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
GH IV L+ G +VN +D G T L +AY L+ +L+ +GA QDK
Sbjct: 89 DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD-GHLEIVEVLLKYGADVNAQDK 144
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A L TPLH A + GHL+ V +L+++GAD D+ G+T +H AA
Sbjct: 30 VRILMANGADVNATDW-LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
GH IV L+ G +VN +D G T L +AY L+ +L+ +GA QDK
Sbjct: 89 DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD-GHLEIVEVLLKYGADVNAQDK 144
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 43/70 (61%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
ATPLH A GHL+ V +L++HGAD D EG T +H AA GH IV L+ G +VN
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 80 LQDRNGMTAL 89
QD+ G TA
Sbjct: 141 AQDKFGKTAF 150
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQ 589
++ G DVN D+ T LH AA N +EI++ + GA V+A D + TPLH A
Sbjct: 66 LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA--KDYEGFTPLHLAAYD 123
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
GHL+ V +L+++GAD D G T
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G T L +A L+ +L+ GA +D G LH A Y +
Sbjct: 70 GADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D G T L +A L+ +L+ GA +D G LH A Y +
Sbjct: 70 GADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AA +EI++ + GA V+A L TPLH A +GHL+
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEV 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA G
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H +V L+ G +VN D NG T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAA-NIGHLEIVEVLLKHGADVNAQDK 144
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A GHL+ V +L+++GAD DS G T +H AA G
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H +V L+ G +VN D NG T L +A + L+ +L+ GA QDK
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAA-NIGHLEIVEVLLKHGADVNAQDK 144
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A L TPLH A +GHL+ V +L+++GAD D G T +H AA
Sbjct: 63 VEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 122 NIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G+T L +A + L+ +L+ GA D +G LH A +
Sbjct: 70 GADVNADDSLGVTPLHLAADR-GHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H AA FGH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D G+T L +A + L+ +L+ GA D +G LH A +
Sbjct: 70 GADVNADDSLGVTPLHLAADR-GHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQ 589
++ G DVN DS VT LH AA +E+++ + GA V+A D TPLH A
Sbjct: 66 LLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA--NDHNGFTPLHLAANI 123
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
GHL+ V +L++HGAD D G T
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + T LH AA EI++ + GA V+A D TPLH A GHL+
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD-GWTPLHLAADNGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D+ G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A D +TPLH A GH + V +L++HGAD D++G T +H AA
Sbjct: 30 VRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
GH IV L+ G +VN QD G+T L +A + L+ +L+ GA QDK
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR-GHLEIVEVLLKHGADVNAQDK 144
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A D +TPLH A GH + V +L++HGAD D++G T +H AA
Sbjct: 30 VRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
GH IV L+ G +VN QD G+T L +A + L+ +L+ GA QDK
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR-GHLEIVEVLLKHGADVNAQDK 144
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D +GST +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN +D +G T L +A L+ +L+ +GA QD +G LH A +
Sbjct: 70 GADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D +GST +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN +D +G T L +A L+ +L+ +GA QD +G LH A +
Sbjct: 70 GADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + + G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A D TPLH A GHL+ V +L+++GAD D+ G T +H AA
Sbjct: 63 VEVLLKHGADVNARDTD-GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 122 DRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DVN D++ T LH AA N +EI++ + GA V+A TPLH A +G
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L++HGAD D G T
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKT 148
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AA +EI++ + GA V+A L +TPLH A GHL+
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D G T +H AA GH IV L+ G +VN QD+ G TA
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDS 610
AA R + ++ ++ GA V+A D+ TPLH A GHL+ V +L+++GAD D+
Sbjct: 21 AARAGRDDEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
GST +H AA FGH IV L+ G +VN +D NG+T L +A + L+ +L+ +GA
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGA 137
Query: 671 STTIQDKIHGNVALHWAIYAKN 692
QDK G A +I N
Sbjct: 138 DVNAQDKF-GKTAFDISINNGN 158
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A GHL+ V +L+++GAD D+ GST +H AA FG
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 123
H IV L+ G +VN +D NG+T L +A + L+ +L+ +GA QDK G A
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGADVNAQDKF-GKTA 149
Query: 124 LHWAIYAKN 132
+I N
Sbjct: 150 FDISINNGN 158
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A L +TPLH A GHL+ V +L+++GAD D G T +H AA
Sbjct: 63 VEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 122 NRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G DVN D+ T LH AA +EI++ + GA V+A D TPLH A +G
Sbjct: 66 LLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-KDDNGITPLHLAANRG 124
Query: 591 HLDSVVLLIQHGADPTLMDSEGST 614
HL+ V +L+++GAD D G T
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKT 148
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA +GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G +VN D G T L +A+ L+ +L+ GA +D +G LH A +
Sbjct: 70 GADVNAYDTLGSTPLHLAAH-FGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+AA+ G V L+A G +VN D G T L +AY L+ +L+ GA D
Sbjct: 20 EAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT 78
Query: 678 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
+ G+ LH A + + + L+ + + + + G+TP L
Sbjct: 79 L-GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL 119
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 593
G DVN D +T LH N +EI++ + A V+A D TPLH A +GHL+
Sbjct: 37 GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA--SDKSGWTPLHLAAYRGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD MD +G T +H AA+ GH IV L+ G +VN QD+ G TA
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A +GHL+ V +L+++GAD MD +G T +H AA+ GH IV L+ G +VN
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 81 QDRNGMTAL 89
QD+ G TA
Sbjct: 142 QDKFGKTAF 150
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH GHL+ + +L+++ AD D G T +H AA G
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAA-EDGHLEIVEVLLKYGADVNAQDK 144
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH GHL+ + +L+++ AD D G T +H AA G
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN D G T L +A + L+ +L+ +GA QDK
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAA-EDGHLEIVEVLLKYGADVNAQDK 144
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H GH I+ L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
+VN D++G T L +AY+ L+ +L+ +GA D G LH A +
Sbjct: 70 AADVNASDKSGWTPLHLAAYR-GHLEIVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLE 127
Query: 135 AITTLVSHTSSLEIPNAQGLTPF 157
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H GH I+ L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
+VN D++G T L +AY+ L+ +L+ +GA D G LH A +
Sbjct: 70 AADVNASDKSGWTPLHLAAYR-GHLEIVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ + + + + G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1 MKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
++ + GA V+A+ D Q TPLH A GHL+ V +L+++GAD D G T
Sbjct: 96 VEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKT 148
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R G
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNG 79
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
HL+ V LL++ GAD D G T +H AA+ GH +V L+ G
Sbjct: 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 139
+D+NG T L +A + L+ +LL+ GA +DK +G LH A A+N H+ + L
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLA--ARNGHLEVVKL 119
Query: 140 V 140
+
Sbjct: 120 L 120
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 699
+D+NG T L +A + L+ +LL+ GA +DK +G LH A A+N H+ + L
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLA--ARNGHLEVVKL 119
Query: 700 V 700
+
Sbjct: 120 L 120
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R G
Sbjct: 54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNG 112
Query: 591 HLDSVVLLIQHGA 603
HL+ V LL++ GA
Sbjct: 113 HLEVVKLLLEAGA 125
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + GA V+A + + TPLH A R GHL+ V LL++ GAD D G T +H AA
Sbjct: 51 VKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Query: 61 QFGHTRIVAYLVAKG 75
+ GH +V L+ G
Sbjct: 110 RNGHLEVVKLLLEAG 124
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
+DK +G LH A + + L+ + + + G TP L N
Sbjct: 61 VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
+DK +G LH A + + L+ + + + G TP L N
Sbjct: 61 VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
+K + GA V+A + + TPLH A R GHL+ V LL++ GA
Sbjct: 84 VKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G D N D T LH AA +EI++ + GA V+A+ + TPLH A GHL+
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+++GAD D+ G T ++ AA +GH IV L+ G +VN QD+ G TA
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D A TPLH A GHL+ V +L+++GAD +D+ G+T +H AA G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
H IV L+ G +VN +D G+T L +AY L+ +L+ GA QDK
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAY-WGHLEIVEVLLKHGADVNAQDK 132
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D A TPLH A GHL+ V +L+++GAD +D+ G+T +H AA G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
H IV L+ G +VN +D G+T L +AY L+ +L+ GA QDK
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAY-WGHLEIVEVLLKHGADVNAQDK 132
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A R G D V +L+ +GAD D G T +H AA GH IV L+ G +VN D NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
T L +A + L+ +L+ +GA +D G L+ A Y + + L+ H +
Sbjct: 69 TTPLHLAA-SLGHLEIVEVLLKYGADVNAKDAT-GITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 146 LEIPNAQGLTPF 157
+ + G T F
Sbjct: 127 VNAQDKFGKTAF 138
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A R G D V +L+ +GAD D G T +H AA GH IV L+ G +VN D NG
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
T L +A + L+ +L+ +GA +D G L+ A Y + + L+ H +
Sbjct: 69 TTPLHLAA-SLGHLEIVEVLLKYGADVNAKDAT-GITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 706 LEIPNAQGLTPF 717
+ + G T F
Sbjct: 127 VNAQDKFGKTAF 138
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A+ + TPLH A GHL+ V +L+++GAD D+ G T ++ AA
Sbjct: 51 VEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+GH IV L+ G +VN QD+ G TA
Sbjct: 110 YWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV---DAIGGDLQATPLHWATRQGH 591
G DVN D+ T LH AA +EI++ + GA V DA G TPL+ A GH
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG----ITPLYLAAYWGH 113
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
L+ V +L++HGAD D G T + G+ + L
Sbjct: 114 LEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 15 GGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 68
G D+ A TPL+ A GHL+ V +L++HGAD D G T + G+ +
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLA 150
Query: 69 AYL 71
L
Sbjct: 151 EIL 153
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A +
Sbjct: 60 LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKN 118
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ V+L++ GA+P D +T +H+AA G+ +++ L+ + N+QD G T L
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 178
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
+ + ++ +LL++ GAS I++K
Sbjct: 179 LACDEE-RVEEAKLLVSQGASIYIENK 204
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKM 155
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 721
+L+ + AST IQD GN LH A + LVS +S+ I N + TP + +
Sbjct: 156 IHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Query: 722 ENIG 725
+G
Sbjct: 215 GGLG 218
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 72/177 (40%), Gaps = 33/177 (18%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LHWA GH + V L+Q G D G + +H AA G IV L+ KG VN
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 81 QDRNGMTALMWSAYK--------------------------------VFSLDPTRLLITF 108
++NG T L ++A K +L +L+ +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 165
AST IQD GN LH A + LVS +S+ I N + TP + + +G
Sbjct: 163 KASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 218
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G VN + T LH+AA NR EI + GA DA +AT +H A +G+L
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKM 155
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
+ +L+ + A + D+EG+T +H A LV++G ++ ++++ T L
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 210
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
+AT +H A +G+L + +L+ + A + D+EG+T +H A LV++G ++
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Query: 79 NLQDRNGMTAL 89
++++ T L
Sbjct: 200 YIENKEEKTPL 210
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A +
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ V+L++ GA+P D +T +H+AA G+ +++ L+ + N+QD G T L
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
+ + ++ +LL++ GAS I++K
Sbjct: 178 LACDEE-RVEEAKLLVSQGASIYIENK 203
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKM 154
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 721
+L+ + AST IQD GN LH A + LVS +S+ I N + TP + +
Sbjct: 155 IHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Query: 722 ENIG 725
+G
Sbjct: 214 GGLG 217
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 72/177 (40%), Gaps = 33/177 (18%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LHWA GH + V L+Q G D G + +H AA G IV L+ KG VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 81 QDRNGMTALMWSAYK--------------------------------VFSLDPTRLLITF 108
++NG T L ++A K +L +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 165
AST IQD GN LH A + LVS +S+ I N + TP + + +G
Sbjct: 162 KASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 217
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G VN + T LH+AA NR EI + GA DA +AT +H A +G+L
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKM 154
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
+ +L+ + A + D+EG+T +H A LV++G ++ ++++ T L
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 209
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
+AT +H A +G+L + +L+ + A + D+EG+T +H A LV++G ++
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Query: 79 NLQDRNGMTAL 89
++++ T L
Sbjct: 199 YIENKEEKTPL 209
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G VN+ D + LH AA R EI+K + +GA V+A+ + TPLH+A +
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
+ + ++ + L+T GAS I++K
Sbjct: 178 LACDEE-RVEEAKFLVTQGASIYIENK 203
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKM 154
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 721
+L+ + AST IQD GN LH A + LV+ +S+ I N + TP + +
Sbjct: 155 VHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 722 ENIG 725
+G
Sbjct: 214 GGLG 217
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LHWA GH + V L+Q G D G + +H AA G IV L+ KG +VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
++NG T L ++A K + +L+ GA+ +D + A+H A N + L+
Sbjct: 102 VNQNGCTPLHYAASKN-RHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILL 159
Query: 141 SHTSSLEIPNAQGLTPFML 159
+ +S I + +G TP L
Sbjct: 160 FYKASTNIQDTEGNTPLHL 178
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G VN + T LH+AA NR EI + GA DA AT +H A +G+L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKM 154
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+ + A + D+EG+T +H A +LV +G ++ ++++ T L
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
AT +H A +G+L V +L+ + A + D+EG+T +H A +LV +G ++
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 80 LQDRNGMTAL 89
++++ T L
Sbjct: 200 IENKEEKTPL 209
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD DS G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD DS G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDSWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDSWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D VT LH AA +EI++ + GA V+A TPLH A GHL+
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDSWGRTPLHLAATVGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
V +L+++GAD D G T
Sbjct: 96 VEVLLEYGADVNAQDKFGKT 115
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
++ G N + + T LH AA E+ KY + A V+A D Q TPLH A R
Sbjct: 32 NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARI 90
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GH + V LL+++ A+P L + G T +H AA+ GH V L+ K + + G T L
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709
+A K + LL+ A K +G LH A++ N + L+ S P
Sbjct: 151 HVAA-KYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 710 NAQGLTPF 717
G TP
Sbjct: 209 AWNGYTPL 216
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A R+GH+++V+ L++ A M +G T +H AA++G R+ L+ + + N
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+NG+T L + + +LD +LL+ G S +G LH A +N V + +L
Sbjct: 175 AGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAK-QNQVEVARSL 231
Query: 140 VSHTSSLEIPNAQGLTPFML 159
+ + S + QG+TP L
Sbjct: 232 LQYGGSANAESVQGVTPLHL 251
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
KY + A V+A D Q TPLH A R GH + V LL+++ A+P L + G T +H AA+
Sbjct: 64 KYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
GH V L+ K + + G T L +A K + LL+ A K +G
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNAAGK-NGL 180
Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157
LH A++ N + L+ S P G TP
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 522 PTSLSDKYQFVEAGQDVNEPDSET-------VTLLHWAAINNRIEIMKYFISQGAIVDAI 574
P ++ KY V + + E D+ +T LH A +N ++I+K + +G +
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
+ TPLH A +Q ++ L+Q+G +G T +H AAQ GH +VA L++K
Sbjct: 209 AWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
N NL +++G+T L A + + +LI G ++ G LH A + N
Sbjct: 268 QANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDATTRM-GYTPLHVASHYGNIK 325
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
+ L+ H + + G +P
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPL 348
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 546 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 605
+T LH A + + I G +VDA + TPLH A+ G++ V L+QH AD
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 606 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
G + +HQAAQ GHT IV L+ G + N +G T L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT + YL+ VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
+ ++ T L +A ++ + +LL+ A+ + G+ LH A + + L+
Sbjct: 76 KAKDDQTPLHCAA-RIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALL 133
Query: 141 SHTSSLEIPNAQGLTPF 157
+S +G TP
Sbjct: 134 EKEASQACMTKKGFTPL 150
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT + YL+ VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
+ ++ T L +A ++ + +LL+ A+ + G+ LH A + + L+
Sbjct: 76 KAKDDQTPLHCAA-RIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALL 133
Query: 701 SHTSSLEIPNAQGLTPF 717
+S +G TP
Sbjct: 134 EKEASQACMTKKGFTPL 150
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G N + VT LH AA E++ +S+ A + +G TPLH ++G
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEG 289
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
H+ +LI+HG G T +H A+ +G+ ++V +L+ +VN + + G + L
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Query: 651 WSAYKVFSLDPTRLLITFGAS 671
+A + + D LL+ GAS
Sbjct: 350 QAAQQGHT-DIVTLLLKNGAS 369
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A +Q ++ L+Q+G +G T +H AAQ GH +VA L++K N NL
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
+++G+T L A + + +LI G ++ G LH A + N + L+
Sbjct: 274 GNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDATTRM-GYTPLHVASHYGNIKLVKFLL 331
Query: 141 SHTSSLEIPNAQGLTPF 157
H + + G +P
Sbjct: 332 QHQADVNAKTKLGYSPL 348
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I G +VDA + TPLH A+ G++ V L+QH AD G + +HQAAQ G
Sbjct: 297 LIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
HT IV L+ G + N +G T L
Sbjct: 356 HTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
T LH A+ I+++K+ + A V+A L +PLH A +QGH D V LL+++GA P
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYL 631
+ S+G+T + A + G+ + L
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
+G TPLH ++GH+ +LI+HG G T +H A+ +G+ ++V +L+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
+VN + + G + L +A + + D LL+ GAS
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLKNGAS 369
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K+ + A V+A L +PLH A +QGH D V LL+++GA P + S+G+T + A
Sbjct: 327 VKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Query: 61 QFGHTRIVAYL 71
+ G+ + L
Sbjct: 386 RLGYISVTDVL 396
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+D+NG T L +A + L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+D+NG T L +A + L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R G
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNG 79
Query: 591 HLDSVVLLIQHGA 603
HL+ V LL++ GA
Sbjct: 80 HLEVVKLLLEAGA 92
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 112 TTIQDKIHGNVALHWAIYAKN-HVAITTLV 140
+DK +G LH A A+N H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLA--ARNGHLEVVKLL 87
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L+ G +VN +D+NG T L +A + L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 672 TTIQDKIHGNVALHWAIYAKN-HVAITTLV 700
+DK +G LH A A+N H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLA--ARNGHLEVVKLL 87
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G VN+ D + LH AA EI+K + +GA V+A+ + TPLH+A +
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
+ + ++ + L+T GAS I++K
Sbjct: 178 LACDEE-RVEEAKFLVTQGASIYIENK 203
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
D ++ T LHWA EI+++ + G V+ D +PLH A G + V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
GA ++ G T +H AA I L+ G N + +D TA+ +A K +L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKM 154
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 721
+L+ + AST IQD GN LH A + LV+ +S+ I N + TP + +
Sbjct: 155 VHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 722 ENIG 725
+G
Sbjct: 214 GGLG 217
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LHWA GH + V L+Q G D G + +H AA G IV L+ KG +VN
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
++NG T L ++A K + +L+ GA+ +D + A+H A N + L+
Sbjct: 102 VNQNGCTPLHYAASKN-RHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILL 159
Query: 141 SHTSSLEIPNAQGLTPFML 159
+ +S I + +G TP L
Sbjct: 160 FYKASTNIQDTEGNTPLHL 178
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G VN + T LH+AA NR EI + GA DA AT +H A +G+L
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKM 154
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V +L+ + A + D+EG+T +H A +LV +G ++ ++++ T L
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
AT +H A +G+L V +L+ + A + D+EG+T +H A +LV +G ++
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 80 LQDRNGMTAL 89
++++ T L
Sbjct: 200 IENKEEKTPL 209
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN +D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNARDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN +D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNARDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
G DVN D VT LH AA +EI++ + GA V+A I G TPLH A GHL
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG---RTPLHLAATVGHL 93
Query: 593 DSVVLLIQHGADPTLMDSEGST 614
+ V +L+++GAD D G T
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKT 115
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A+ D TPLH A ++GHL+ V +L++HGAD D G T +H AA
Sbjct: 30 VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GH IV L+ G +VN QD+ G TA
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L ATR G D V +L+ +GAD MD G T +H AA+ GH IV L+
Sbjct: 11 GSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN D G T L +A V L+ +L+ +GA QDK
Sbjct: 70 GADVNASDIWGRTPLHLAA-TVGHLEIVEVLLEYGADVNAQDK 111
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 593
G DVN D VT LH AA +EI++ + GA V+A D+ TPLH A GHL+
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA--SDIWGRTPLHLAATVGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGST 614
V +L+++GAD D G T
Sbjct: 95 IVEVLLEYGADVNAQDKFGKT 115
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A HL+ V +L++HGAD D++GST +H AA FG
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A HL+ V +L++HGAD D++GST +H AA FG
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D +G+T +H AA + H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 117
G +VN D +G T L +A +F L+ +L+ GA QDK
Sbjct: 70 GADVNAHDNDGSTPLHLAA--LFGHLEIVEVLLKHGADVNAQDK 111
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D +G+T +H AA + H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 677
G +VN D +G T L +A +F L+ +L+ GA QDK
Sbjct: 70 GADVNAHDNDGSTPLHLAA--LFGHLEIVEVLLKHGADVNAQDK 111
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + T LH AA + +EI++ + GA V+A D +TPLH A GHL+
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND-GSTPLHLAALFGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
++ + GA V+A D +TPLH A GHL+ V +L++HGAD D G T
Sbjct: 63 VEVLLKHGADVNAHDND-GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+G VN + + LH AA++ R +++ + GA A D QA PLH A +QGH
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD-QAVPLHLACQQGHFQ 133
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
V L+ A P D G+T + A GH +VA L+ G ++N + G TAL +
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 654 YK--VFSLDPTRLLITFGASTTIQDK 677
+ VF ++ LL+ GAS + +K
Sbjct: 194 IEKHVFVVE---LLLLHGASVQVLNK 216
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
++PLH A G D + LL++HGA+ +++ + +H A Q GH ++V L+ N
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 139
+D +G T L+++ + LL+ GAS + GN ALH A+ K+ + L
Sbjct: 147 KKDLSGNTPLIYACSGGHH-ELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELL 204
Query: 140 VSHTSSLEIPNAQGLTPFMLLEEN 163
+ H +S+++ N + T E+N
Sbjct: 205 LLHGASVQVLNKRQRTAVDCAEQN 228
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
+ GA A D QA PLH A +QGH V L+ A P D G+T + A G
Sbjct: 105 LLKHGANAGARNAD-QAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYK--VFSLDPTRLLITFGASTTIQDK 117
H +VA L+ G ++N + G TAL + + VF ++ LL+ GAS + +K
Sbjct: 164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE---LLLLHGASVQVLNK 216
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ ++ GA V+A+ D TPLH A + GHL+ V +L+++GAD D+ G T +H AA
Sbjct: 30 VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L+ G +VN QD+ G TA
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
++ ++ GA V+A+ D TPLH A + GHL+ V +L+++GAD D+ G T +H AA
Sbjct: 30 VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
GH IV L+ G +VN QD+ G TA
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD +D +G T +H AAQ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN +D G+T L +A + L+ +L+ GA QDK
Sbjct: 70 GADVNAEDNFGITPLHLAAIR-GHLEIVEVLLKHGADVNAQDK 111
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD +D +G T +H AAQ GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN +D G+T L +A + L+ +L+ GA QDK
Sbjct: 70 GADVNAEDNFGITPLHLAAIR-GHLEIVEVLLKHGADVNAQDK 111
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D + +T LH AA +EI++ + GA V+A + TPLH A +GHL+
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-EDNFGITPLHLAAIRGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
T LH AA N E +K +S+GA V+A D TPLH A + GH + V LL+ GAD
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
+G+T H A + GH IV L AKG +VN
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 81 QDRNGMT 87
+ ++G T
Sbjct: 71 RSKDGNT 77
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 641 QDRNGMT 647
+ ++G T
Sbjct: 71 RSKDGNT 77
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +S+GA V+A D TPLH A + GH + V LL+ GAD +G+T H A
Sbjct: 25 VKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83
Query: 61 QFGHTRIVAYLVAKGINVN 79
+ GH IV L AKG +VN
Sbjct: 84 KNGHHEIVKLLDAKGADVN 102
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
+ + G DVN + T LH AA N EI+K +++GA V+A D TP H A +
Sbjct: 27 KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKN 85
Query: 590 GHLDSVVLLIQHGAD 604
GH + V LL GAD
Sbjct: 86 GHHEIVKLLDAKGAD 100
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+G+T +H AA+ GH V L++KG +VN + ++G T L +A K + +LL+ GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGA 66
Query: 111 STTIQDKIHGNVALHWAIYAKNHVAITTL 139
+ K GN H A +H + L
Sbjct: 67 DVNARSK-DGNTPEHLAKKNGHHEIVKLL 94
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+G+T +H AA+ GH V L++KG +VN + ++G T L +A K + +LL+ GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGA 66
Query: 671 STTIQDKIHGNVALHWAIYAKNHVAITTL 699
+ K GN H A +H + L
Sbjct: 67 DVNARSK-DGNTPEHLAKKNGHHEIVKLL 94
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D +T LH AA+N+ +EI++ + GA V+AI + TPLH GHL+
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A HL+ V +L+++GAD +D+ G T +H A +G
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A HL+ V +L+++GAD +D+ G T +H A +G
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T +H AA H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN D G T L A L+ +L+ GA QDK
Sbjct: 70 GADVNAIDAIGETPLHLVAM-YGHLEIVEVLLKHGADVNAQDK 111
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T +H AA H IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN D G T L A L+ +L+ GA QDK
Sbjct: 70 GADVNAIDAIGETPLHLVAM-YGHLEIVEVLLKHGADVNAQDK 111
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
++ + GA V+AI + TPLH GHL+ V +L++HGAD D G T
Sbjct: 63 VEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 62.8 bits (151), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATR 588
+ VE + + D E T L WA NNR+ I + +S+G+ V+ D TPL W+
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSII 110
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
G+ + L++HGA+ + EG T + A+++G + IV L+ G +++ +D G+TA
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL W+ G+ + L++HGA+ + EG T + A+++G + IV L+ G +++
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 81 QDRNGMTA 88
+D G+TA
Sbjct: 163 RDLTGLTA 170
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL A G +++ L+++ D EGST + A + I L++KG NVN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 81 QDRNGMTALMWS 92
+D +G T LMWS
Sbjct: 97 KDFSGKTPLMWS 108
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL A G +++ L+++ D EGST + A + I L++KG NVN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 641 QDRNGMTALMWS 652
+D +G T LMWS
Sbjct: 97 KDFSGKTPLMWS 108
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
+T L WA + L L+ G++ D G T + + FG++ + +L+ G NVN
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
++ G T L+ A K + + L+ GA + +D
Sbjct: 129 DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARD 164
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 580 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
+T L WA + L L+ G++ D G T + + FG++ + +L+ G NVN
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 640 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 676
++ G T L+ A K + + L+ GA + +D
Sbjct: 129 DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARD 164
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATR 588
+ + G +VN D T L W+ I E+ + + GA V+ +L+ TPL A++
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLIVASK 143
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
G + V L++ GAD + D G T A FG ++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
DS T + A G + LV + +D G TAL+W A K L L++
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIW-AVKNNRLGIAEKLLSK 90
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
G++ +D G L W+I L+ H +++ N +G TP ++
Sbjct: 91 GSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIV 140
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
DS T + A G + LV + +D G TAL+W A K L L++
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIW-AVKNNRLGIAEKLLSK 90
Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G++ +D G L W+I L+ H +++ N +G TP ++
Sbjct: 91 GSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIV 140
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPL+ AT GHL+ V +L+++GAD +D+ G T +H AA G
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H I L+ G +VN QD+ G TA
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPL+ AT GHL+ V +L+++GAD +D+ G T +H AA G
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
H I L+ G +VN QD+ G TA
Sbjct: 92 HLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L+ +GAD D G T ++ A GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN D G T L +A+ + L+ +L+ GA QDK
Sbjct: 70 GADVNAVDAIGFTPLHLAAF-IGHLEIAEVLLKHGADVNAQDK 111
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L+ +GAD D G T ++ A GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN D G T L +A+ + L+ +L+ GA QDK
Sbjct: 70 GADVNAVDAIGFTPLHLAAF-IGHLEIAEVLLKHGADVNAQDK 111
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D +T L+ A + +EI++ + GA V+A+ + TPLH A GHL+
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
+L++HGAD D G T
Sbjct: 96 AEVLLKHGADVNAQDKFGKT 115
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 595
D+N+ D + LHWA R +++ I +GA ++ + GD TPLH A GH D V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 83
Query: 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 75 GINVNLQDRNGMTALMWSAY 94
++N + +G L ++ +
Sbjct: 90 KADINAVNEHGNVPLHYACF 109
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 635 GINVNLQDRNGMTALMWSAY 654
++N + +G L ++ +
Sbjct: 90 KADINAVNEHGNVPLHYACF 109
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 1 MKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ I +GA ++ + GD TPLH A GH D V L+Q+ AD ++ G+ +H A
Sbjct: 50 VEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 107
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNG 85
+G ++ LVA G V++ ++ G
Sbjct: 108 CFWGQDQVAEDLVANGALVSICNKYG 133
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 595
D+N+ D + LHWA R +++ I +GA ++ + GD TPLH A GH D V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 88
Query: 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G
Sbjct: 89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 75 GINVNLQDRNGMTALMWSAY 94
++N + +G L ++ +
Sbjct: 95 KADINAVNEHGNVPLHYACF 114
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G D +PLHWA R+G V +LI GA +M+ T +H AA GH IV L+
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 635 GINVNLQDRNGMTALMWSAY 654
++N + +G L ++ +
Sbjct: 95 KADINAVNEHGNVPLHYACF 114
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 1 MKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
++ I +GA ++ + GD TPLH A GH D V L+Q+ AD ++ G+ +H A
Sbjct: 55 VEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNG 85
+G ++ LVA G V++ ++ G
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYG 138
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 43/258 (16%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
+ +E G D+N + + +T LH A I++ ++++K+ + GA ++ + PLH A
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASC 116
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIH----------------------QAAQFGHTRI 627
G+LD LI GA ++SEG T + +AA+ RI
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176
Query: 628 V-----AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 682
+ +L + IN ++G TAL +A K ++ + +LLI I+D G
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EVLKLLIQARYDVNIKD-YDGWT 234
Query: 683 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD 742
LH A + A LV + +E N G T F + +E+I + + EL+
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---------LGYLEELQ- 284
Query: 743 HYNTQQNIIHRFSKSKTT 760
+QN++H + K +
Sbjct: 285 ---KKQNLLHSEKREKKS 299
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LH A ++D V L+++GA+ D+EG +H AA G+ I YL+++G +V
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Query: 81 QDRNGMTAL 89
+ G T L
Sbjct: 135 VNSEGDTPL 143
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A G + V+ L++ GAD + +G T +HQA + +V +LV G N+N D G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 86 MTALMWSAYKVFSLDPTRLLITFGA 110
L +A + LD LI+ GA
Sbjct: 107 WIPLHAAASCGY-LDIAEYLISQGA 130
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A G + V+ L++ GAD + +G T +HQA + +V +LV G N+N D G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 646 MTALMWSAYKVFSLDPTRLLITFGA 670
L +A + LD LI+ GA
Sbjct: 107 WIPLHAAASCGY-LDIAEYLISQGA 130
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ +++ G I D T LH A +G+ + + LLIQ D + D +G T +H AA
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+G LV ++ ++ G TA
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 94
G T +H AA G+T ++ L+ +VN++D +G T L +A+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 33 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 89
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 90 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 148
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
L+ G T IQD + G+ AL
Sbjct: 149 -------------LVKDG-DTDIQDLLRGDAAL 167
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
Q+TPLH+A + V L+QHGAD D G +H A +GH + LV G V
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Query: 79 NLQDRNGMTALMWSA----YKVFSL------DPTR--------LLITFGASTTIQDKIHG 120
N+ D T L +A Y++ L DPT+ L + T IQD + G
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRG 163
Query: 121 NVAL 124
+ AL
Sbjct: 164 DAAL 167
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQ 589
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAK 120
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
G + LL+QHGADPT + +G+T
Sbjct: 121 GKYEICKLLLQHGADPTKKNRDGNT 145
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 87
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 146
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
L+ G T IQD + G+ AL
Sbjct: 147 -------------LVKDG-DTDIQDLLRGDAAL 165
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
Q+TPLH+A + V L+QHGAD D G +H A +GH + LV G V
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 79 NLQDRNGMTALMWSA----YKVFSL------DPTR--------LLITFGASTTIQDKIHG 120
N+ D T L +A Y++ L DPT+ L + T IQD + G
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRG 161
Query: 121 NVAL 124
+ AL
Sbjct: 162 DAAL 165
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQ 589
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAK 118
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
G + LL+QHGADPT + +G+T
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNT 143
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
Q VN D E T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 35 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 91
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 92 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 150
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
L+ G T IQD + G+ AL
Sbjct: 151 -------------LVKDG-DTDIQDLLRGDAAL 169
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
Q+TPLH+A + V L+QHGAD D G +H A +GH + LV G V
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105
Query: 79 NLQDRNGMTALMWSA----YKVFSL------DPTR--------LLITFGASTTIQDKIHG 120
N+ D T L +A Y++ L DPT+ L + T IQD + G
Sbjct: 106 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRG 165
Query: 121 NVAL 124
+ AL
Sbjct: 166 DAAL 169
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDL-QATPLHWATRQ 589
++ G DV+ D + LH A E+ + + GA+V+ DL + TPLH A +
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAK 122
Query: 590 GHLDSVVLLIQHGADPTLMDSEGST 614
G + LL+QHGADPT + +G+T
Sbjct: 123 GKYEICKLLLQHGADPTKKNRDGNT 147
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 81 QDRNGMTAL 89
+D G+T L
Sbjct: 129 RDARGLTPL 137
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 641 QDRNGMTAL 649
+D G+T L
Sbjct: 129 RDARGLTPL 137
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 21 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 80 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 157 FML 159
L
Sbjct: 137 LEL 139
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 21 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 80 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 717 FML 719
L
Sbjct: 137 LEL 139
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
+ ++ G N D+ + +H AA ++ +K + GA V+ G A P+H A ++
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQE 111
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
GH +VV + +D D+ G T + A Q G +V L
Sbjct: 112 GH-TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 81 QDRNGMTAL 89
+D G+T L
Sbjct: 135 RDARGLTPL 143
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+P+H A R G LD++ +L++HGAD + D G+ IH A Q GHT +V++L A+ +++
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 641 QDRNGMTAL 649
+D G+T L
Sbjct: 135 RDARGLTPL 143
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
Query: 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 142
Query: 157 FML 159
L
Sbjct: 143 LEL 145
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
LL + P ++ G T + Q FG T I L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
F LD ++L+ GA + D G + +H A+ + H A+ + ++ S L +A+GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 142
Query: 717 FML 719
L
Sbjct: 143 LEL 145
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI--VDAIGGDLQATPLHWATR 588
VE G DVN PD +H A ++ + ++ + DA G TPL A +
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG----LTPLELALQ 148
Query: 589 QGHLDSVVLLIQHGADP 605
+G D V +L H P
Sbjct: 149 RGAQDLVDILQGHMVAP 165
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 4 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 62 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 564 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 62 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 29 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
Query: 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 88 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 144
Query: 157 FMLLEE 162
L +
Sbjct: 145 LELARQ 150
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 29 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 88 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 144
Query: 717 FMLLEE 722
L +
Sbjct: 145 LELARQ 150
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 4 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 60 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 564 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
+ QGA + DA G +P+H A R G LD++ +L++HGAD +DS GS IH A
Sbjct: 60 LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
+ GH+ +V++L + +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
Query: 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 142
Query: 157 FMLLEE 162
L +
Sbjct: 143 LELARQ 148
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
LL + P ++ G T + Q FG + L+ +G + N+QD +G + + +A
Sbjct: 27 LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
F LD ++L+ GA D G++ +H AI + H ++ + ++ S L +A GLTP
Sbjct: 86 F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 142
Query: 717 FMLLEE 722
L +
Sbjct: 143 LELARQ 148
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
I+ A G D+ A TPLH A GHL+ V +L+++GAD + G T +H AA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
I+ A G D+ A TPLH A GHL+ V +L+++GAD + G T +H AA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
H IV L+ G +VN QD+ G TA
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G DVN D T LH AA+ +EI++ + GA V+A G + TPLH A HL+
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
V +L++HGAD D G T
Sbjct: 96 VEVLLKHGADVNAQDKFGKT 115
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 74
G DL L A R G D V +L +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
G +VN G T L +A+ L+ +L+ GA QDK
Sbjct: 70 GADVNATGNTGRTPLHLAAW-ADHLEIVEVLLKHGADVNAQDK 111
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
G DL L A R G D V +L +GAD D G T +H AA GH IV L+
Sbjct: 11 GSDLGKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
G +VN G T L +A+ L+ +L+ GA QDK
Sbjct: 70 GADVNATGNTGRTPLHLAAW-ADHLEIVEVLLKHGADVNAQDK 111
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
++ + GA V+A G + TPLH A HL+ V +L++HGAD D G T
Sbjct: 63 VEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKT 115
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
D NG T L+++ + + ++L+ GA TI+
Sbjct: 98 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
D NG T L+++ + + ++L+ GA TI+
Sbjct: 98 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E +N D E T L WAA + +I ++++ + GA +G ++ L A +G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSLACSKGY 81
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D V +L+ G D D G T + A H + V L+ G + ++ +G ++
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
TPL +A H+ V +L++ GADPT+ G + A G+ +
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV 150
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
F+ Q + G + + L A +G+ D V +L+ G D D G T + A
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H + V L+ G + ++ +G ++
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSM 139
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
D NG T L+++ + + ++L+ GA TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
D NG T L+++ + + ++L+ GA TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E +N D E T L WAA + +I ++++ + GA +G ++ L A +G+
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSLACSKGY 97
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D V +L+ G D D G T + A H + V L+ G + ++ +G ++
Sbjct: 98 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
TPL +A H+ V +L++ GADPT+ G + A G+ +
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV 166
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
F+ Q + G + + L A +G+ D V +L+ G D D G T + A
Sbjct: 70 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 129
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H + V L+ G + ++ +G ++
Sbjct: 130 HVKCVKMLLESGADPTIETDSGYNSM 155
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
D NG T L+++ + + ++L+ GA TI+
Sbjct: 96 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL WA G + V L+Q+GADP L+ + + A G+T IV L+ G++VN
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
D NG T L+++ + + ++L+ GA TI+
Sbjct: 96 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E +N D E T L WAA + +I ++++ + GA +G ++ L A +G+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA-LSLACSKGY 79
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D V +L+ G D D G T + A H + V L+ G + ++ +G ++
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
TPL +A H+ V +L++ GADPT+ G + A G+ +
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV 148
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
F+ Q + G + + L A +G+ D V +L+ G D D G T + A
Sbjct: 52 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 111
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
H + V L+ G + ++ +G ++
Sbjct: 112 HVKCVKMLLESGADPTIETDSGYNSM 137
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 548 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 607
LL A N +++++ + GA V+ + TPLH A + D V LL++HGADP L
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY--KVFSLDPTRLL 665
G+T AA G +++ ++KG +VN D G TA M +A KV +L + L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL---KFL 124
Query: 666 ITFGASTTIQDK 677
GA+ ++ K
Sbjct: 125 YKRGANVNLRRK 136
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A + D V LL++HGADP L G+T AA G +++ ++KG +VN
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Query: 81 QDRNGMTALMWSAY--KVFSLDPTRLLITFGASTTIQDK 117
D G TA M +A KV +L + L GA+ ++ K
Sbjct: 101 CDFYGFTAFMEAAVYGKVKAL---KFLYKRGANVNLRRK 136
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 38/201 (18%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
F+ G DVNE D T AA+ +++ +K+ +GA V+ L T++
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN----------LRRKTKE- 139
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTAL 649
D + G+T + AA+ GH ++ L+ + G +VN D G AL
Sbjct: 140 -------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 650 MWSAYKVFSLDP------TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 703
+ + + S D T LL+ GA ++ + G L A+ K H+ + +
Sbjct: 187 I---HALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAV-EKKHLGLVQRLLEQ 241
Query: 704 SSLEI--PNAQGLTPFMLLEE 722
+EI ++ G T +L E
Sbjct: 242 EHIEINDTDSDGKTALLLAVE 262
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYK 95
LL+ HGAD + G T + A + H +V L+ + I +N D +G TAL+ A +
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVE 262
Query: 96 VFSLDPTRLLITFGASTTIQDKI 118
+ LL GAST D +
Sbjct: 263 LKLKKIAELLCKRGASTDCGDLV 285
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 58 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+A Q +V L+ G NVN Q+ G + +A ++ D LL+ GA ++ K
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 118 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177
+G A A + + +S + + + G T FM A K+
Sbjct: 71 -NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-----------EAAVYGKV 118
Query: 178 TELKDHYNTQQNI-IHRFSKSKTTRAR 203
LK Y N+ + R +K R R
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLR 145
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
+A Q +V L+ G NVN Q+ G + +A ++ D LL+ GA ++ K
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 678 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 737
+G A A + + +S + + + G T FM A K+
Sbjct: 71 -NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-----------EAAVYGKV 118
Query: 738 TELKDHYNTQQNI-IHRFSKSKTTRAR 763
LK Y N+ + R +K R R
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLR 145
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 96/244 (39%), Gaps = 57/244 (23%)
Query: 522 PTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 581
PTS S + VE LL A N +++++ + GA V+ + T
Sbjct: 13 PTSSSGRRAAVEDNH-----------LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT 61
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGS---------------------------- 613
PLH A + D V LL++HGADP L G+
Sbjct: 62 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC 121
Query: 614 -----TCIHQAAQFGHTRIVAYLVAKGINVNL-------QDR---NGMTALMWSAYKVFS 658
T +AA +G + + +L +G NVNL Q+R G TALM +A K
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181
Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLT 715
LL GA D + N +H + + + AIT L+ H + + + +G T
Sbjct: 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 716 PFML 719
P +L
Sbjct: 242 PLIL 245
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 46/185 (24%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS--------------------------- 53
TPLH A + D V LL++HGADP L G+
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE 120
Query: 54 ------TCIHQAAQFGHTRIVAYLVAKGINVNL-------QDR---NGMTALMWSAYKVF 97
T +AA +G + + +L +G NVNL Q+R G TALM +A K
Sbjct: 121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGL 154
LL GA D + N +H + + + AIT L+ H + + + +G
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 155 TPFML 159
TP +L
Sbjct: 241 TPLIL 245
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
F+ G DVNE D T AA+ +++ +K+ +GA V+ L T++
Sbjct: 111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN----------LRRKTKE- 159
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTAL 649
D + G+T + AA+ GH ++ L+ + G +VN D G AL
Sbjct: 160 -------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Query: 650 MWSAYKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 706
+ + D T LL+ GA ++ + G L A+ K H+ + + +
Sbjct: 207 IHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGLVQRLLEQEHI 264
Query: 707 EI--PNAQGLTPFML 719
EI ++ G T +L
Sbjct: 265 EINDTDSDGKTALLL 279
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 487 RGRLQNFVDFTGWSCF------GLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE 540
+G N DF G++ F G K + + + V + D+ + + G
Sbjct: 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG----- 168
Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLH--WATRQGHLDSVV- 596
T L AA +E++K + + GA V+A + +H ++ ++++
Sbjct: 169 -----ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 223
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 655
LL+ HGAD + G T + A + H +V L+ + I +N D +G TAL+ A +
Sbjct: 224 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVE 282
Query: 656 VFSLDPTRLLITFGASTTIQD 676
+ LL GAST D
Sbjct: 283 LKLKKIAELLCKRGASTDCGD 303
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 37 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 95
LL+ HGAD + G T + A + H +V L+ + I +N D +G TAL+ A +
Sbjct: 224 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVE 282
Query: 96 VFSLDPTRLLITFGASTTIQD 116
+ LL GAST D
Sbjct: 283 LKLKKIAELLCKRGASTDCGD 303
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 81 QDRNGMTALMWSAY 94
D NG T L+++ +
Sbjct: 98 YDWNGGTPLLYAVH 111
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 641 QDRNGMTALMWSAY 654
D NG T L+++ +
Sbjct: 98 YDWNGGTPLLYAVH 111
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
VN+PD T L WA+ IE +++ + GA + + ++ L A+ G+ D V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA-LSLASTGGYTDIVGL 87
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L++ D + D G T + A H + V L+A+G ++ + +G T +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
+ + L A+ G+ D V LL++ D + D G T + A H + V L+A+G ++
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 79 NLQDRNGMTAL 89
+ +G T +
Sbjct: 129 TTEADSGYTPM 139
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 53 STCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
S IHQ A G + + KG N VN D G T L+W A ++ R L+ +GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLLEWGAD 61
Query: 112 TTIQDK 117
I K
Sbjct: 62 PHILAK 67
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
L +PLH A + GH + +L++ G T +H AA GH IV L+ G +
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 78 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
VN +D MTAL W+ + LLI +GA Q K
Sbjct: 93 VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
L +PLH A + GH + +L++ G T +H AA GH IV L+ G +
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
VN +D MTAL W+ + LLI +GA Q K
Sbjct: 93 VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
LH AA + + G DA + TPLH A +GH + V +L++HGAD
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D T +H A + H +V L+ G +V+ Q + TA
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A +GH + V +L++HGAD D T +H A + H +V L+ G +V+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 81 QDRNGMTAL 89
Q + TA
Sbjct: 129 QSKFCKTAF 137
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A R G D V +L+ +GA P D G++ +H AAQ+GH L+ G++ + + +
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
T L +A + + + +L+ GA +D + ALHWA NH + L+
Sbjct: 68 RTPLHMAASEGHA-NIVEVLLKHGADVNAKDMLK-MTALHWAT-EHNHQEVVELL 119
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A R G D V +L+ +GA P D G++ +H AAQ+GH L+ G++ + + +
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
T L +A + + + +L+ GA +D + ALHWA NH + L+
Sbjct: 68 RTPLHMAASEGHA-NIVEVLLKHGADVNAKDMLK-MTALHWAT-EHNHQEVVELL 119
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV 571
++ G DVN D +T LHWA +N E+++ I GA V
Sbjct: 86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 81 QDRNGMTALMWS 92
D NG T L+++
Sbjct: 98 YDWNGGTPLLYA 109
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPL WA+ G +++V L++ GADP ++ E + + A+ G+T IV L+ + +++N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 641 QDRNGMTALMWS 652
D NG T L+++
Sbjct: 98 YDWNGGTPLLYA 109
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
VN+PD T L WA+ IE +++ + GA + + ++ L A+ G+ D V L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA-LSLASTGGYTDIVGL 87
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L++ D + D G T + A + H + V L+A+G ++ + +G T +
Sbjct: 88 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
+ + L A+ G+ D V LL++ D + D G T + A + H + V L+A+G ++
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 79 NLQDRNGMTAL 89
+ +G T +
Sbjct: 129 TTEADSGYTPM 139
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
I D GG TPL +A R H+ V L+ GAD T G T + A G+ ++
Sbjct: 97 IYDWNGG----TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 53 STCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
S IHQ A G + + KG N VN D G T L+W A ++ R L+ +GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLLEWGAD 61
Query: 112 TTIQDK 117
I K
Sbjct: 62 PHILAK 67
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 613 STCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
S IHQ A G + + KG N VN D G T L+W A ++ R L+ +GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLLEWGAD 61
Query: 672 TTIQDK 677
I K
Sbjct: 62 PHILAK 67
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
+LQ TPLH A + L+ G DP L D G+T +H A + G V L
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 77 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130
+L + NG T L ++ + L LL++ GA Q+ +G ALH A+
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 131 KNHVAITTLVSHTSSLEIPNAQGLTPFML 159
+N ++ L+ + + QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
+LQ TPLH A + L+ G DP L D G+T +H A + G V L
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 637 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
+L + NG T L ++ + L LL++ GA Q+ +G ALH A+
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFML 719
+N ++ L+ + + QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
+LQ TPLH A + L+ G DP L D G+T +H A + G V L
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 77 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130
+L + NG T L ++ + L LL++ GA Q+ +G ALH A+
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 131 KNHVAITTLVSHTSSLEIPNAQGLTPFML 159
+N ++ L+ + + QG +P+ L
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
+LQ TPLH A + L+ G DP L D G+T +H A + G V L
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 637 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
+L + NG T L ++ + L LL++ GA Q+ +G ALH A+
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFML 719
+N ++ L+ + + QG +P+ L
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 2 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 74 KGINVNLQDRNGMTAL 89
G +VN QD+ G TA
Sbjct: 61 AGADVNAQDKFGKTAF 76
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 2 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 634 KGINVNLQDRNGMTAL 649
G +VN QD+ G TA
Sbjct: 61 AGADVNAQDKFGKTAF 76
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 614
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 26/196 (13%)
Query: 547 TLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
T+LHW A N+ E K I+ GA V+A D + TPL A V L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCD-ENTPLXLAVLARRRRLVAYL 185
Query: 599 IQHGADPTLMDSEGSTCIHQAA---QFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSA 653
+ GADPT+ + + +HQAA FG V L + + +++ DRNG TAL A
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXX--VYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 654 YKV--FSLDPTRLLIT-------FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT- 703
+ + +LL+ GA+ +K G ALH+A N + LV
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 704 SSLEIPNAQGLTPFML 719
S+ + + G TP L
Sbjct: 304 SNKDKQDEDGKTPIXL 319
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA- 60
K I+ GA V+A D + TPL A V L + GADPT+ + + +HQAA
Sbjct: 150 KECIAAGADVNAXDCD-ENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 61 --QFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSAYKV--FSLDPTRLLIT------- 107
FG V L + + +++ DRNG TAL A+ + +LL+
Sbjct: 209 NRDFGXX--VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDY 266
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT-SSLEIPNAQGLTPFML 159
GA+ +K G ALH+A N + LV S+ + + G TP L
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 537 DVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQ-------ATPLHWA 586
D+ E D T L A N +++ K + +GA VD G + T LH+A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 587 TRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
+ + V L+ + G++ D +G T I AAQ G +V YL+ +G +V D
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 646 MTA 648
TA
Sbjct: 347 HTA 349
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 2 KYFISQGAIVDAIGGDLQ-------ATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGS 53
K + +GA VD G + T LH+A + + V L+ + G++ D +G
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 88
T I AAQ G +V YL+ +G +V D TA
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 531 FVEAGQDVN-----EPDSET---VTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQAT 581
VE G V+ DSE T LH+AA + I+KY + + G+ D D + T
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK-T 315
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
P+ A ++G ++ V LIQ GA +D+ T A H IV
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 574
KY E G + ++ D + T + AA RIE++ Y I QGA V+A+
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1 MKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+KY + + G+ D D + TP+ A ++G ++ V LIQ GA +D+ T A
Sbjct: 295 VKYLVGEKGSNKDKQDEDGK-TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
Query: 60 AQFGHTRIV 68
H IV
Sbjct: 354 QANNHHNIV 362
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 513 MKRYEV--YTEPTSLSDKYQFVEAGQD----VNEPDSETVTLLHWAAINNRIEIMKYFIS 566
MK YEV E + D + E QD V+E D+E T L+ A NN IEI K I
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL--MDSEGSTCIHQAAQFGH 624
+GA ++ + + +P +A QG + + +++H A P L + G + AA+ GH
Sbjct: 61 RGADIN-LQNSISDSPYLYAGAQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGH 118
Query: 625 TRIVAYLVAKGI-NVNLQDRNGMTALMWS-----AYKVFSLDPTRLLITFGASTTIQDKI 678
V L+ G +++ Q+ G TAL+ + +++ D +LL+ GA +I+D
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ-DIVKLLMENGADQSIKDN- 176
Query: 679 HGNVALHWA 687
G A+ +A
Sbjct: 177 SGRTAMDYA 185
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVN 79
TPL+ A ++ LI GAD L +S + A G T I+AY++ ++N
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFG 109
+R G AL+ +A K +D +LL+ G
Sbjct: 101 KHNRYGGNALIPAAEK-GHIDNVKLLLEDG 129
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 529 YQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT- 587
Y A D+N+ + L AA I+ +K + G D T L A
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 588 -RQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
R+G + D V LL+++GAD ++ D+ G T + A Q G+T I L
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 32.7 bits (73), Expect = 0.89, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 29 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
Q + D V LL+++GAD ++ D+ G T + A Q G+T I L
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 26 ATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFG-----HTRIVAYLVAKGINVN 79
A +GH+D+V LL++ G D + G T + +A + IV L+ G + +
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172
Query: 80 LQDRNGMTALMWSAYKVFS 98
++D +G TA+ ++ K ++
Sbjct: 173 IKDNSGRTAMDYANQKGYT 191
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 86 MTALMWSAYKVFSLDPTRLLITFGAS 111
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 646 MTALMWSAYKVFSLDPTRLLITFGAS 671
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 13 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 72
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 73 AKGINV 78
G V
Sbjct: 124 ESGAAV 129
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 633 AKGINV 638
G V
Sbjct: 124 ESGAAV 129
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 574
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 547 TLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 603
TLLH A+I I ++Y + G+ + D G TPLH A GHL V LL+QH A
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW----TPLHEACNHGHLKVVELLLQHKA 67
Query: 604 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
+ + +H AA+ GH IV L++ G + N
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
+ L A K +D +LL+++GAS
Sbjct: 72 TGYQNDSPLH-DAAKNGHVDIVKLLLSYGAS 101
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
+ L A K +D +LL+++GAS
Sbjct: 72 TGYQNDSPLH-DAAKNGHVDIVKLLLSYGAS 101
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
TPLH A GHL V LL+QH A + + +H AA+ GH IV L++ G + N
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
G DP + G T +H A+ G V YL+ G + N++D G T L A L
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH-EACNHGHLKV 58
Query: 102 TRLLITFGA---STTIQDKIHGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 156
LL+ A +T Q+ + LH A AKN HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGYQN----DSPLHDA--AKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
G DP + G T +H A+ G V YL+ G + N++D G T L A L
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH-EACNHGHLKV 58
Query: 662 TRLLITFGA---STTIQDKIHGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 716
LL+ A +T Q+ + LH A AKN HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGYQN----DSPLHDA--AKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 86 MTALMWSAYKVFSLDPTRLLITFGAS 111
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
++ +G D V +I DP+L + EG T +H A GHT IV +LV G+NVN D +G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 646 MTALMWSAYKVFSLDPTRLLITFGAS 671
T L +A ++ + L+ GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 13 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 72
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 73 AKGINV 78
G V
Sbjct: 124 ESGAAV 129
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
++ D T LH A GH + V L+Q G + DS+G T +H AA + ++ +LV
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 633 AKGINV 638
G V
Sbjct: 124 ESGAAV 129
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 574
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN QD+ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 86 MTAL 89
TA
Sbjct: 69 KTAF 72
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A R G D V +L+ +GAD D +G T +H AA+ GH IV L+ G +VN QD+ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 646 MTAL 649
TA
Sbjct: 69 KTAF 72
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D G T
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 614
++ ++ GA V+A D TPLH A R+GHL+ V +L++ GAD D G T
Sbjct: 18 VRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
G DVN D + T LH AA +EI++ + GA V+A
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 74 KGINVNLQDRNGMTAL 89
G +V QD+ G TA
Sbjct: 79 AGADVXAQDKFGKTAF 94
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
+G DL L A R G D V +L+ +GAD D GST +H AA+ GH +V L+
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 634 KGINVNLQDRNGMTAL 649
G +V QD+ G TA
Sbjct: 79 AGADVXAQDKFGKTAF 94
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 10 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 614
I+ A G D+ A TPLH A R GHL+ V LL++ GAD D G T
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 530 QFVEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 581
+F ++ D+ +P ++ V LL A N ++M A G ++T
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KST 60
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
PLH A + V LL+QHGAD D G +H A +GH + L+ G VN
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 687
D T L +A K ++ LL++ GA T+ + HG A+ A
Sbjct: 121 DLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVN-CHGKSAVDMA 164
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 547 TLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 603
T LH A + R ++ + + +GA V+ D TPLH A + H D + +L +HGA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGA 271
Query: 604 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
+DS G T +H+AA GH + L++ G + ++ G TA
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
++TPLH A + V LL+QHGAD D G +H A +GH + L+ G V
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 79 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 127
N D T L +A K ++ LL++ GA T+ + HG A+ A
Sbjct: 118 NAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVN-CHGKSAVDMA 164
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + +GA V+ D TPLH A + H D + +L +HGA +DS G T +H+AA
Sbjct: 231 ELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTA 88
GH + L++ G + ++ G TA
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 33/221 (14%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA---IVDAIGG---DLQATP-- 582
++ G VN D T LH AA NR+E+ +S GA +V+ G D+ TP
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169
Query: 583 ------------LHWATRQGHLDSV----VLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
L A R+ L V L I + P + T +H A H +
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE----TALHCAVASLHPK 225
Query: 627 ---IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
+ L+ KG NVN ++++ MT L +A + + D +L GA D + G A
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN-DVMEVLHKHGAKMNALDSL-GQTA 283
Query: 684 LHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 724
LH A A + L+S+ S I + QG T + E +
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 66 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
++ L+ KG NVN ++++ MT L +A + + D +L GA D + G ALH
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHN-DVMEVLHKHGAKMNALDSL-GQTALH 285
Query: 126 WAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164
A A + L+S+ S I + QG T + E +
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
+++ ++QGA ++A T LH A R D+ L+ GAD D+ G T +H
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 619 AAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
A + L+ + N+N + +G T L+ +A ++ LIT A D
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA-RLAIEGMVEDLITADADINAADN 149
Query: 678 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 737
G ALHWA N A+ L+ H ++ + + + TP L G+ KA +D
Sbjct: 150 -SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE-GSYEASKALLDNF 207
Query: 738 T--ELKDHYN 745
E+ DH +
Sbjct: 208 ANREITDHMD 217
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
++QGA ++A T LH A R D+ L+ GAD D+ G T +H A
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + N+N + +G T L+ +A ++ LIT A D G
Sbjct: 96 AMGVFQILLRNRATNLNARMHDGTTPLILAA-RLAIEGMVEDLITADADINAADN-SGKT 153
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT--EL 180
ALHWA N A+ L+ H ++ + + + TP L G+ KA +D E+
Sbjct: 154 ALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE-GSYEASKALLDNFANREI 212
Query: 181 KDHYN 185
DH +
Sbjct: 213 TDHMD 217
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQ 589
++AG D N D+ T LH A + + + + + A ++A D TPL A R
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD-GTTPLILAARL 128
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
V LI AD D+ G T +H AA +T V L+ N + QD T L
Sbjct: 129 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+A + S + ++ L+ A+ I D +
Sbjct: 189 FLAA-REGSYEASKALLDNFANREITDHM 216
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MKYFISQGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
M ++ GA V+ + GG ATPL AT L + L+Q+GA+ DS G +H A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GHT + + +G ++ +D G L
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 516 YEVYTEPTSLSDKYQFVEAGQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIV-- 571
+ P SL + G DVN + T L A N + ++ + GA V
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 572 -DAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 630
D+ G PLH AT GH L ++ GAD DSEG + A + + IV
Sbjct: 264 ADSAG----RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 631 L 631
L
Sbjct: 320 L 320
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
PLH AT GH L ++ GAD DSEG + A + + IV L
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MKYFISQGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
M ++ GA V+ + GG ATPL AT L + L+Q+GA+ DS G +H A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GHT + + +G ++ +D G L
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 516 YEVYTEPTSLSDKYQFVEAGQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
+ P SL + G DVN + T L A N + ++ + GA V+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
+ PLH AT GH L ++ GAD DSEG + A + + IV L
Sbjct: 264 ADSAGRG-PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
PLH AT GH L ++ GAD DSEG + A + + IV L
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
EP SE + LH A+ R + M ++ GA V+ + GG ATPL AT
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L + L+Q+GA+ DS G +H A GHT + + +G ++ +D G L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MKYFISQGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
M ++ GA V+ + GG ATPL AT L + L+Q+GA+ DS G +H A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GHT + + +G ++ +D G L
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 516 YEVYTEPTSLSDKYQFVEAGQDVN--EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
+ P SL + G DVN + T L A N + ++ + GA V+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
+ PLH AT GH L ++ GAD DSEG + A + + IV L
Sbjct: 264 ADSAGRG-PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
PLH AT GH L ++ GAD DSEG + A + + IV L
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 56/114 (49%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
D+ + + +T LH A E ++ + +GA +DA+ +PL A L V
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
LL+QHGA+ GS+ +H A+ G +V LV G + +L++ + T LM
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + +GA +DA+ +PL A L V LL+QHGA+ GS+ +H A+
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALM 90
G +V LV G + +L++ + T LM
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFIS---QGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
D + T LH A + + + ++ QG I +L+ TPLH A V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV--AKGINVNLQDRN--GMTALMWSAY 654
+ GA P +D G T H A + + L+ A ++L+ RN G+TAL A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAV 124
Query: 655 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH-----------T 703
+ +LL+ GA D G L A+ + + L+ H +
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 704 SSLEIPNAQGLTPFM 718
S+L + +GL P +
Sbjct: 185 SALHSASGRGLLPLV 199
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
QG I +L+ TPLH A V LL+ GA P +D G T H A +
Sbjct: 31 LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 90
Query: 64 HTRIVAYLV--AKGINVNLQDRN--GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
+ L+ A ++L+ RN G+TAL A + +LL+ GA D
Sbjct: 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQLLLERGADIDAVDIKS 149
Query: 120 GNVALHWAIYAKNHVAITTLVSH-----------TSSLEIPNAQGLTPFM 158
G L A+ + + L+ H +S+L + +GL P +
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 199
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 21 TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
TPLH A QG+L +V L+ Q G + + ++ T +H A +V LV G
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPT--RLLITFGASTTIQ---DKIHGNVALHWAIYAK 131
+ DR+G TA + PT R L+ A T+ G ALH A+ +
Sbjct: 71 SPMALDRHGQTAAHLACEH---RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 132 NHVAITTLVSHTSSLEIPNAQ-GLTPFMLLEEN 163
+ L+ + ++ + + G +P + EN
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLH 584
L + +V G+DVN LH+AA ++EI+++ + +GA ++A TPL
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLL 73
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCI 616
A +GH+ V LL+ GAD T+ +G T +
Sbjct: 74 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 25 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 84
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
+T L+ + Y+ + +LL++ GA T++
Sbjct: 68 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 97
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
+T L+ + Y+ + +LL++ GA T++
Sbjct: 68 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 97
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 551 WAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGG---RKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D T + A GH V L++KG + ++ +G+TAL
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 81
PLH+A G L+ + L+ GAD D T + A GH V L++KG + ++
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 82 DRNGMTAL 89
+G+TAL
Sbjct: 98 GPDGLTAL 105
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI 56
+++ + +GA ++A TPL A +GH+ V LL+ GAD T+ +G T +
Sbjct: 51 LEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 16 GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 68
G + T LH A +L++ ++L++ A P L M SE G T +H A + +V
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 69 AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
L+A+G +V+ + G L ++A V S + RLLI GA Q
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 116 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 163
D + GN LH I N + + H SLE +PN QGLTPF L +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 164 I 164
I
Sbjct: 210 I 210
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 576 GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 628
G + T LH A +L++ ++L++ A P L M SE G T +H A + +V
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 629 AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
L+A+G +V+ + G L ++A V S + RLLI GA Q
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 676 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 723
D + GN LH I N + + H SLE +PN QGLTPF L +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 724 I 724
I
Sbjct: 210 I 210
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLH 584
L + +V G+DVN LH+AA ++EI+++ + +GA ++A TPL
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLL 78
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGST 614
A +GH+ V LL+ GAD T+ +G T
Sbjct: 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 25 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 84
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
+T L+ + Y+ + +LL++ GA T++
Sbjct: 73 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 102
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
WA + G LD V + G D G +H AA G I+ +L+ KG ++N D++
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
+T L+ + Y+ + +LL++ GA T++
Sbjct: 73 HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 102
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 551 WAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGG---RKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
D T + A GH V L++KG + ++ +G+TA
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 81
PLH+A G L+ + L+ GAD D T + A GH V L++KG + ++
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 82 DRNGMTAL 89
+G+TA
Sbjct: 103 GPDGLTAF 110
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 54
+++ + +GA ++A TPL A +GH+ V LL+ GAD T+ +G T
Sbjct: 56 LEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
+H A R G LD++ L+++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82 DRNGMTA 88
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
+H A R G LD++ L+++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
A++ A + LD + L+ A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
A++ A + LD + L+ A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 38 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA-KEG 114
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 134
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA-KEG 114
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 694
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G + + D ++H AA ++ ++ + A V+ I + PLH A ++GHL
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN-IEDNEGNLPLHLAAKEGHLRV 118
Query: 595 VVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQ 641
V L++H A + +G T A +G +V+ + A G NLQ
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 78
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 79 NLQ 81
NLQ
Sbjct: 166 NLQ 168
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82 DRNGMTA 88
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 38 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 134
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 694
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G + + D ++H AA +++ ++ + A V+ I + PLH A ++GHL
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRV 118
Query: 595 VVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQ 641
V L++H A + +G T A +G +V+ + A G NLQ
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 78
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 79 NLQ 81
NLQ
Sbjct: 166 NLQ 168
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82 DRNGMTA 88
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 38 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 134
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 694
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 75
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82 DRNGMTA 88
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 -NAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 -NAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 38 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97
L+ GA+P L D G+ IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 134
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ GA+P L D G+ IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 694
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 78
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 79 NLQ 81
NLQ
Sbjct: 166 NLQ 168
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 638
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 639 NLQ 641
NLQ
Sbjct: 166 NLQ 168
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82 DRNGMTA 88
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
+H A R G LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
+ G TA
Sbjct: 134 NHKGDTA 140
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
A +G L+ + L+Q+ + + G T + Q + G+ I L+ +G N +L+DR G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
A++ A + LD + L+ F A I+D GN+ LH A + + LV HT+S
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 38 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 98 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 134
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ GA+P L D G IH AA+ G + L+ +VN++D G L +A K
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-KEG 114
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA-IYAKNHV 694
L L+ AS G+ A A +Y +N V
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 78
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 79 NLQ 81
NLQ
Sbjct: 166 NLQ 168
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--V 638
PLH A ++GHL V L++H A + +G T A +G +V+ + A G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 639 NLQ 641
NLQ
Sbjct: 166 NLQ 168
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 70
++A T L A G +D V L+ AD + D +GST + A + GH I
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 71 LVA-KGINVNLQDRNGMTALM 90
L+A +++L DR+G TALM
Sbjct: 235 LLAVPSCDISLTDRDGSTALM 255
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 630
++A T L A G +D V L+ AD + D +GST + A + GH I
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 631 LVA-KGINVNLQDRNGMTALM 650
L+A +++L DR+G TALM
Sbjct: 235 LLAVPSCDISLTDRDGSTALM 255
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VD----AIGGDLQATPLHWATRQGHL 592
VN DS T LH++ + +++ + G VD A + T L Q +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
++V+ L + G G T + A G +V L+A +VN+QD +G TALM
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T L Q +++V+ L + G G T + A G +V L+A +VN+
Sbjct: 152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV 211
Query: 81 QDRNGMTALM 90
QD +G TALM
Sbjct: 212 QDDDGSTALM 221
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 80
PLH A ++G+L + + + +D GST ++ A GH IV L + I +N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
Q++ G TAL +A+K ++ D +LL+ GA T +++
Sbjct: 136 QNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN 170
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 640
PLH A ++G+L + + + +D GST ++ A GH IV L + I +N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 676
Q++ G TAL +A+K ++ D +LL+ GA T +++
Sbjct: 136 QNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN 170
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 20 ATPLHWATRQGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
+T L+WA GH D V L Q + + G T +H AA G+ IV L+AKG
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Query: 79 NLQD 82
+L++
Sbjct: 167 DLRN 170
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 580 ATPLHWATRQGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
+T L+WA GH D V L Q + + G T +H AA G+ IV L+AKG
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Query: 639 NLQD 642
+L++
Sbjct: 167 DLRN 170
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
VN D T L+WA +I++ +Q I L T LH A +G+ D V L
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 598 LIQHGADPTLMDSE 611
L+ GA L + E
Sbjct: 159 LLAKGARTDLRNIE 172
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 592
+H AAI+ ++ ISQG V+ I D +PLH A GHL
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 593 -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 636 INVN 639
N++
Sbjct: 125 GNID 128
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
DW +E LS + + G VN ++ V+ LH A + + +K + GA
Sbjct: 3 DWSPMHEAAIHGHQLSLR-NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 571 VDAIGGD--------------------LQ-----------ATPLHWATRQGHLDSVVLLI 599
V+ + D LQ A+P+H A R+GH++ V LI
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
+G + S T ++ A + V L+ G +VN G + + + + S
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASE 179
Query: 660 DPTRLLITFGASTTIQD 676
+ LL+ FGA T ++
Sbjct: 180 ELACLLMDFGADTQAKN 196
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 35/112 (31%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------------------- 32
++ ISQG V+ I D +PLH A GHL
Sbjct: 19 LRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 77
Query: 33 -----DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++
Sbjct: 78 VSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYGGNID 128
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
+ T L ++A S D LL+ GAS + + +H A + + +L+
Sbjct: 65 VTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLI 121
Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
++ +++ + TP L EN
Sbjct: 122 AYGGNIDHKISHLGTPLYLACEN 144
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
+ T L ++A S D LL+ GAS + + +H A + + +L+
Sbjct: 65 VTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLI 121
Query: 701 SHTSSLEIPNAQGLTPFMLLEEN 723
++ +++ + TP L EN
Sbjct: 122 AYGGNIDHKISHLGTPLYLACEN 144
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
A+P+H A R+GH++ V LI +G + S T ++ A + V L+ G +VN
Sbjct: 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
G + + + + S + LL+ FGA T ++
Sbjct: 162 --QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G +++ S T L+ A N + +K + GA V+ G Q +PLH R
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVARTA 177
Query: 591 HLDSVVLLIQHGADPTLMDSEG 612
+ LL+ GAD ++EG
Sbjct: 178 SEELACLLMDFGADTQAKNAEG 199
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 592
+H AAI+ ++ ISQG V+ I D +PLH A GHL
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 593 -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 636 INVN 639
N++
Sbjct: 181 GNID 184
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
DW +E LS + + G VN ++ V+ LH A + + +K + GA
Sbjct: 59 DWSPMHEAAIHGHQLSLR-NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 571 VDAIGGD--------------------LQ-----------ATPLHWATRQGHLDSVVLLI 599
V+ + D LQ A+P+H A R+GH++ V LI
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 177
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
+G + S T ++ A + V L+ G +VN G + + + + S
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASE 235
Query: 660 DPTRLLITFGASTTIQD 676
+ LL+ FGA T ++
Sbjct: 236 ELACLLMDFGADTQAKN 252
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 35/112 (31%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------------------- 32
++ ISQG V+ I D +PLH A GHL
Sbjct: 75 LRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133
Query: 33 -----DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++
Sbjct: 134 VSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYGGNID 184
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
+ T L ++A S D LL+ GAS + + +H A + + +L+
Sbjct: 121 VTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLI 177
Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
++ +++ + TP L EN
Sbjct: 178 AYGGNIDHKISHLGTPLYLACEN 200
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
+ T L ++A S D LL+ GAS + + +H A + + +L+
Sbjct: 121 VTADWHTPL-FNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLI 177
Query: 701 SHTSSLEIPNAQGLTPFMLLEEN 723
++ +++ + TP L EN
Sbjct: 178 AYGGNIDHKISHLGTPLYLACEN 200
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
A+P+H A R+GH++ V LI +G + S T ++ A + V L+ G +VN
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
G + + + + S + LL+ FGA T ++
Sbjct: 218 --QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G +++ S T L+ A N + +K + GA V+ G Q +PLH R
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTA 233
Query: 591 HLDSVVLLIQHGADPTLMDSEG 612
+ LL+ GAD ++EG
Sbjct: 234 SEELACLLMDFGADTQAKNAEG 255
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 75
D +H A R+G D V LI+ G PT+ + G T +H A +FG YL + G
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
D +H A R+G D V LI+ G PT+ + G T +H A +FG YL + G
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
D E IH AA+ G T V L+ G++ +Q+R G TAL A K +D + L +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVDTAKYLASV 75
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 162
G ++ HG +H A+ A + LV E +G P LL E
Sbjct: 76 GEVHSL---WHGQKPIHLAVXANKTDLVVALV------EGAKERGQXPESLLNE 120
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
D E IH AA+ G T V L+ G++ +Q+R G TAL A K +D + L +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVDTAKYLASV 75
Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 722
G ++ HG +H A+ A + LV E +G P LL E
Sbjct: 76 GEVHSL---WHGQKPIHLAVXANKTDLVVALV------EGAKERGQXPESLLNE 120
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 21 TPLHWATRQG--HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF 62
T LHW G +L+ + +L+Q GA PT D T + +A +F
Sbjct: 140 TALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEF 183
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 581 TPLHWATRQG--HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF 622
T LHW G +L+ + +L+Q GA PT D T + +A +F
Sbjct: 140 TALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEF 183
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 620 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 124
Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 125 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + +++ + +G T L+ +A ++ LI A D + G
Sbjct: 70 AQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL-GKS 127
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREG 169
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 170 SYETAKVLLDHFANRDITD 188
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 620 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 156
Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + +++ + +G T L+ +A ++ LI A D + G
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL-GKS 159
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREG 201
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 202 SYETAKVLLDHFANRDITD 220
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 620 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 157
Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 158 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 102
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + +++ + +G T L+ +A ++ LI A D + G
Sbjct: 103 AQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL-GKS 160
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 161 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 144 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREG 202
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 203 SYETAKVLLDHFANRDITD 221
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 620 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+ L+ + +++ + +G T L+ +A L+ + + D
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL- 121
Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 122 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSAD 66
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + +++ + +G T L+ +A L+ + + D G
Sbjct: 67 AQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL--GKS 124
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 125 ALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 108 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREG 166
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 167 SYETAKVLLDHFANRDITD 185
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ FI QGA + AT LH A D+ L++ AD + D+ G T +H A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 620 AQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
+ L+ + +++ + +G T L+ +A ++ LI A D +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL 156
Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
G ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 157 -GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
FI QGA + AT LH A D+ L++ AD + D+ G T +H A
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 64 HTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
+ L+ + +++ + +G T L+ +A ++ LI A D + G
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVNAVDDL-GKS 159
Query: 123 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
ALHWA N A L+ + ++ ++ N + TP L
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREG 201
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 202 SYETAKVLLDHFANRDITD 220
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human
Iaspp
Length = 229
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 30 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
G L+ V ++ DP+ + EG T +H A + IV +L+ G NVN D +G T L
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 90 MWSA 93
+A
Sbjct: 92 HCAA 95
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
G L+ V ++ DP+ + EG T +H A + IV +L+ G NVN D +G T L
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 650 MWSA 653
+A
Sbjct: 92 HCAA 95
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT--R 588
+ AG +VN PDS T LH AA N I + GA + A AT R
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR 132
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCI-HQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
+G+ D L LM+S + +A+FG +++ + + V +D T
Sbjct: 133 EGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE--LSFREGESVTVLRRDGPEET 190
Query: 648 ALMWSA 653
W+A
Sbjct: 191 DWWWAA 196
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+EAG + N P+S + + + + + GA + P+H A R+G
Sbjct: 31 LLEAGANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG 89
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
P+H A R+G LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
P+H A R+G LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
P+H A R+G LD++V+L + GA + D+ G + A + GH + YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
P+H A R+G LD++V+L + GA + D+ G + A + GH I YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
P+H A R+G LD++V+L + GA + D+ G + A + GH I YL A
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVA 69
VDA+ + + T L + G V LL + GAD D G T +H AA + +V
Sbjct: 70 VDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 70 YLVAKGINVNLQDRNGMTAL 89
LV G ++ ++D G+TAL
Sbjct: 129 ALVELGADIEVEDERGLTAL 148
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVA 629
VDA+ + + T L + G V LL + GAD D G T +H AA + +V
Sbjct: 70 VDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 630 YLVAKGINVNLQDRNGMTAL 649
LV G ++ ++D G+TAL
Sbjct: 129 ALVELGADIEVEDERGLTAL 148
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 135
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 69 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 126
Query: 136 ITTLVSHTSSLEIPNAQGLTPFMLLEE 162
+ LV + +E+ + +GLT L E
Sbjct: 127 VEALVELGADIEVEDERGLTALELARE 153
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 695
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 69 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 126
Query: 696 ITTLVSHTSSLEIPNAQGLTPFMLLEE 722
+ LV + +E+ + +GLT L E
Sbjct: 127 VEALVELGADIEVEDERGLTALELARE 153
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVA 69
VDA+ + + T L + G V LL + GAD D G T +H AA + +V
Sbjct: 69 VDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 70 YLVAKGINVNLQDRNGMTAL 89
LV G ++ ++D G+TAL
Sbjct: 128 ALVELGADIEVEDERGLTAL 147
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQFGHTRIVA 629
VDA+ + + T L + G V LL + GAD D G T +H AA + +V
Sbjct: 69 VDAVDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 630 YLVAKGINVNLQDRNGMTAL 649
LV G ++ ++D G+TAL
Sbjct: 128 ALVELGADIEVEDERGLTAL 147
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 135
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 68 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 125
Query: 136 ITTLVSHTSSLEIPNAQGLTPFMLLEE 162
+ LV + +E+ + +GLT L E
Sbjct: 126 VEALVELGADIEVEDERGLTALELARE 152
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVA 695
+V+ D NG TAL++ A + S RLL GA +D G ALH A Y + V
Sbjct: 68 DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV- 125
Query: 696 ITTLVSHTSSLEIPNAQGLTPFMLLEE 722
+ LV + +E+ + +GLT L E
Sbjct: 126 VEALVELGADIEVEDERGLTALELARE 152
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLI 599
PD T H A +E++K + D Q T LH A + + LI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTAL 649
++GA + D +H+AA G +++ L G + VN QD+ G T L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 79
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 80 LQDRNGMTAL 89
QD+ G T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLI 599
PD T H A +E++K + D Q T LH A + + LI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTAL 649
++GA + D +H+AA G +++ L G + VN QD+ G T L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 79
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 80 LQDRNGMTAL 89
QD+ G T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLI 599
PD T H A +E++K + D Q T LH A + + LI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTAL 649
++GA + D +H+AA G +++ L G + VN QD+ G T L
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VN 79
T LH A + + LI++GA + D +H+AA G +++ L G + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 80 LQDRNGMTAL 89
QD+ G T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+ +D + D + ++A +N + ++ ++ GA+ + + + PLH A
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF---PLHQAATLEDTK 76
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
V +L+ G D + D +G+T ++ A G+ + V V K + + G + A
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHA 136
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 81
PLH A V +L+ G D + D +G+T ++ A G+ + V V K +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 82 DRNGMTALMWSA 93
+ G + A
Sbjct: 125 GKTGWKTSFYHA 136
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
TPLHW T +L+ V L++HG++ D+ G +C+ +A +
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621
TPLHW T +L+ V L++HG++ D+ G +C+ +A +
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ + DVN D + LHWAA N ++ + GA D + + + TPL A R+G
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREG 92
Query: 591 HLDSVVLLIQHGADPTLMD 609
++ +L+ H A+ + D
Sbjct: 93 SYETAKVLLDHFANRDITD 111
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 507 PERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
P +D E EP + Q D + P LH A I+ E+++
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP-------LHVAVIHKDAEMVRLLRD 179
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
GA ++ TPLH A + LL++ GADPT G T + A
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGIN 77
T LH A H + L+ A +D + G T +H AA G V L A G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 78 VNLQDRNGMTAL 89
V + +R G TAL
Sbjct: 71 VLVAERGGHTAL 82
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGIN 637
T LH A H + L+ A +D + G T +H AA G V L A G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 638 VNLQDRNGMTAL 649
V + +R G TAL
Sbjct: 71 VLVAERGGHTAL 82
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 507 PERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
P +D E EP + Q D + P LH A I+ E+++
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP-------LHVAVIHKDAEMVRLLRD 179
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
GA ++ TPLH A + LL++ GADPT G T + A
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGIN 77
T LH A H + L+ A +D + G T +H AA G V L A G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 78 VNLQDRNGMTAL 89
V + +R G TAL
Sbjct: 71 VLVAERGGHTAL 82
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGIN 637
T LH A H + L+ A +D + G T +H AA G V L A G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 638 VNLQDRNGMTAL 649
V + +R G TAL
Sbjct: 71 VLVAERGGHTAL 82
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAK 359
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAK 919
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAK 359
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAK 919
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAK 359
SFC TC+VR SK+C IC+ V K
Sbjct: 33 SFCKTCIVRYLETSKYCPICDVQVHK 58
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAK 919
SFC TC+VR SK+C IC+ V K
Sbjct: 33 SFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 554 INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
I+ R+E++ F+SQGAI+ +G D P+ R G + S +
Sbjct: 2 ISKRLELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAI 43
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 551 WAAINNR--IEIMKYFISQGAIVDAIGG-DLQATP---LHWATR---QGHLDSVVLLIQH 601
W AI NR + +++ F + + G D QA LH A + Q L V +IQ+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
G ++G+T +H AA + + L+ V + G TAL
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,753,904
Number of Sequences: 62578
Number of extensions: 1062326
Number of successful extensions: 3560
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2342
Number of HSP's gapped (non-prelim): 753
length of query: 923
length of database: 14,973,337
effective HSP length: 108
effective length of query: 815
effective length of database: 8,214,913
effective search space: 6695154095
effective search space used: 6695154095
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)