Query psy3899
Match_columns 923
No_of_seqs 473 out of 4270
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 20:14:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.5E-62 8.7E-67 561.2 42.6 388 6-725 2-389 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.4E-57 4.8E-62 521.8 37.2 372 1-704 30-401 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 4.5E-46 1.5E-50 410.6 34.7 299 19-709 25-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 3.2E-45 1.1E-49 406.1 24.8 158 4-164 10-168 (351)
5 4g8k_A 2-5A-dependent ribonucl 100.0 4E-42 1.4E-46 379.0 31.0 164 1-165 41-214 (337)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-41 3.7E-46 365.7 31.2 129 19-149 5-134 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 3.8E-42 1.3E-46 381.3 22.4 133 40-179 12-145 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 1.7E-40 5.7E-45 356.5 28.5 123 50-179 3-126 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-40 3.6E-45 372.3 18.6 171 533-706 187-372 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 2.9E-39 1E-43 346.5 22.9 149 16-167 12-171 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 4.4E-39 1.5E-43 359.2 22.2 193 530-725 151-358 (373)
12 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-38 5.1E-43 336.6 21.7 146 19-167 3-148 (261)
13 3ljn_A Hypothetical protein; a 100.0 1.4E-39 4.9E-44 362.7 14.0 163 7-179 9-194 (364)
14 3ljn_A Hypothetical protein; a 100.0 1.9E-39 6.4E-44 361.8 14.0 166 539-707 132-316 (364)
15 3d9h_A CDNA FLJ77766, highly s 100.0 4E-38 1.4E-42 337.7 22.1 116 50-167 13-139 (285)
16 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-38 1.4E-42 333.1 20.0 114 51-167 2-115 (261)
17 1oy3_D Transcription factor in 100.0 7.4E-38 2.5E-42 335.5 20.6 124 533-656 146-269 (282)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 4.6E-37 1.6E-41 323.6 23.2 98 536-634 148-245 (253)
19 3b7b_A Euchromatic histone-lys 100.0 1.2E-35 4E-40 309.7 24.0 153 9-164 2-155 (237)
20 1k1a_A B-cell lymphoma 3-encod 100.0 2.9E-36 1E-40 315.0 19.3 150 12-164 3-161 (241)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 7.2E-36 2.5E-40 314.5 21.9 228 478-726 7-236 (253)
22 3b7b_A Euchromatic histone-lys 100.0 2.5E-35 8.6E-40 307.1 23.7 214 478-725 8-222 (237)
23 4b93_B Ankyrin repeat domain-c 100.0 2.2E-36 7.5E-41 320.2 13.4 147 19-167 11-166 (269)
24 1oy3_D Transcription factor in 100.0 1.5E-35 5.1E-40 317.6 19.8 213 478-724 6-269 (282)
25 3eu9_A Huntingtin-interacting 100.0 1.9E-34 6.6E-39 300.7 26.7 152 11-165 2-154 (240)
26 3aji_A 26S proteasome non-ATPa 100.0 3.7E-35 1.3E-39 304.6 20.9 146 18-165 5-151 (231)
27 1k1a_A B-cell lymphoma 3-encod 100.0 2.2E-35 7.4E-40 308.4 18.7 213 478-724 6-227 (241)
28 4b93_B Ankyrin repeat domain-c 100.0 1E-35 3.4E-40 315.2 15.6 197 525-724 24-229 (269)
29 1s70_B 130 kDa myosin-binding 100.0 6.1E-35 2.1E-39 315.8 20.6 149 24-179 3-160 (299)
30 2dzn_A Probable 26S proteasome 100.0 4E-35 1.4E-39 303.6 18.1 210 481-723 2-218 (228)
31 3kea_A K1L; tropism, ANK repea 100.0 2E-35 6.8E-40 316.5 16.1 141 29-179 9-150 (285)
32 1sw6_A Regulatory protein SWI6 100.0 3E-36 1E-40 329.7 8.6 166 1-179 35-226 (327)
33 3kea_A K1L; tropism, ANK repea 100.0 9.5E-36 3.3E-40 319.1 12.3 157 3-167 18-175 (285)
34 3aji_A 26S proteasome non-ATPa 100.0 3.7E-34 1.3E-38 297.0 21.9 210 480-723 5-215 (231)
35 3eu9_A Huntingtin-interacting 100.0 1.6E-33 5.5E-38 293.7 24.6 217 478-725 6-222 (240)
36 2f8y_A Notch homolog 1, transl 100.0 1.7E-33 5.9E-38 290.2 23.8 165 1-167 7-172 (223)
37 1sw6_A Regulatory protein SWI6 100.0 2.6E-35 9E-40 322.2 10.4 188 525-723 110-326 (327)
38 2dzn_A Probable 26S proteasome 100.0 1.2E-33 4.2E-38 292.4 20.1 148 18-167 1-154 (228)
39 1s70_B 130 kDa myosin-binding 100.0 4.7E-34 1.6E-38 308.8 16.7 196 525-723 53-275 (299)
40 2f8y_A Notch homolog 1, transl 100.0 3.8E-33 1.3E-37 287.7 20.5 198 525-725 4-203 (223)
41 4gpm_A Engineered protein OR26 100.0 3.5E-32 1.2E-36 265.5 19.4 159 547-708 6-164 (169)
42 4gpm_A Engineered protein OR26 100.0 2.3E-32 7.9E-37 266.8 17.1 152 21-179 6-157 (169)
43 1ikn_D Protein (I-kappa-B-alph 100.0 8E-33 2.8E-37 287.9 13.5 216 478-723 5-229 (236)
44 2rfa_A Transient receptor pote 100.0 4.7E-32 1.6E-36 281.3 17.9 184 525-710 16-227 (232)
45 2rfa_A Transient receptor pote 100.0 5E-31 1.7E-35 273.6 19.8 180 544-726 2-210 (232)
46 3hra_A Ankyrin repeat family p 100.0 9.7E-31 3.3E-35 264.8 20.4 180 543-725 3-190 (201)
47 2etb_A Transient receptor pote 100.0 8.4E-32 2.9E-36 284.0 11.5 198 481-706 2-247 (256)
48 3hra_A Ankyrin repeat family p 100.0 4.8E-30 1.6E-34 259.7 22.2 187 515-703 8-201 (201)
49 2pnn_A Transient receptor pote 100.0 3.3E-31 1.1E-35 282.4 13.8 213 478-718 10-272 (273)
50 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-31 7.3E-36 277.2 11.0 185 539-725 2-196 (236)
51 2rfm_A Putative ankyrin repeat 100.0 4.2E-30 1.4E-34 258.1 15.4 162 10-179 27-188 (192)
52 2etb_A Transient receptor pote 100.0 2E-30 6.9E-35 273.4 12.4 181 544-726 1-234 (256)
53 3v31_A Ankyrin repeat family A 100.0 2.3E-29 8E-34 246.4 16.9 154 19-179 3-156 (167)
54 3v30_A DNA-binding protein rfx 100.0 1.6E-29 5.5E-34 248.9 15.7 170 545-716 2-171 (172)
55 2pnn_A Transient receptor pote 100.0 4.2E-30 1.4E-34 273.8 10.9 189 535-725 3-245 (273)
56 3jxi_A Vanilloid receptor-rela 100.0 6.7E-30 2.3E-34 270.1 11.9 200 480-707 4-252 (260)
57 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.8E-29 1.3E-33 245.4 16.4 155 18-179 13-167 (169)
58 2rfm_A Putative ankyrin repeat 100.0 5.6E-29 1.9E-33 249.9 16.1 163 538-703 28-190 (192)
59 1awc_B Protein (GA binding pro 100.0 9.5E-29 3.2E-33 238.2 15.8 151 19-177 2-152 (153)
60 4hbd_A KN motif and ankyrin re 100.0 3E-29 1E-33 267.0 12.7 169 3-179 94-271 (276)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-28 5.3E-33 239.2 16.4 158 544-705 4-162 (162)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 9.1E-29 3.1E-33 240.8 14.2 153 19-179 5-158 (162)
63 3v30_A DNA-binding protein rfx 100.0 1.4E-28 4.6E-33 242.3 15.6 156 19-181 2-158 (172)
64 3v31_A Ankyrin repeat family A 100.0 2.2E-28 7.7E-33 239.4 16.5 161 544-707 2-162 (167)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.4E-28 1.9E-32 237.1 18.4 159 542-703 11-169 (169)
66 4hbd_A KN motif and ankyrin re 100.0 1.1E-28 3.8E-33 262.7 14.5 176 525-703 89-273 (276)
67 3jxi_A Vanilloid receptor-rela 100.0 6.2E-29 2.1E-33 262.6 9.9 183 542-726 2-238 (260)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.2E-28 1.8E-32 233.8 14.7 152 19-179 2-154 (156)
69 3twr_A Tankyrase-2; ankyrin re 100.0 3.4E-28 1.2E-32 237.6 13.3 155 17-179 6-161 (165)
70 3f6q_A Integrin-linked protein 100.0 1.1E-27 3.6E-32 237.5 16.5 168 543-713 3-171 (179)
71 2vge_A RELA-associated inhibit 99.9 4E-30 1.4E-34 265.3 -1.8 200 528-733 1-208 (229)
72 2aja_A Ankyrin repeat family p 99.9 5.5E-30 1.9E-34 282.3 -1.0 146 19-179 92-246 (376)
73 2vge_A RELA-associated inhibit 99.9 5.6E-29 1.9E-33 256.7 6.4 170 1-176 1-206 (229)
74 3f6q_A Integrin-linked protein 99.9 9.6E-28 3.3E-32 237.8 14.8 154 19-179 5-159 (179)
75 2aja_A Ankyrin repeat family p 99.9 3.9E-31 1.3E-35 291.5 -11.1 139 19-167 65-213 (376)
76 1awc_B Protein (GA binding pro 99.9 2.7E-27 9.4E-32 227.9 16.9 151 545-699 2-152 (153)
77 3twr_A Tankyrase-2; ankyrin re 99.9 1.5E-27 5.1E-32 233.0 13.7 160 541-704 4-164 (165)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.4E-28 8.2E-33 254.3 7.3 181 542-725 2-193 (239)
79 1d9s_A Cyclin-dependent kinase 99.9 1.4E-27 4.9E-32 224.9 11.4 134 8-145 2-136 (136)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.7E-26 5.8E-31 223.2 16.7 153 545-702 2-155 (156)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 2.4E-27 8.3E-32 229.1 10.0 146 12-161 6-152 (156)
82 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.3E-27 2.5E-31 243.1 13.0 158 18-183 4-164 (239)
83 3t8k_A Uncharacterized protein 99.9 8E-27 2.7E-31 231.6 8.6 153 19-179 6-175 (186)
84 3t8k_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 228.2 6.8 163 545-710 6-184 (186)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 3.1E-25 1.1E-29 208.7 14.3 124 18-143 13-136 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 1E-25 3.5E-30 217.6 10.3 142 577-721 10-152 (156)
87 1d9s_A Cyclin-dependent kinase 99.9 2.9E-25 1E-29 209.0 12.3 133 569-705 3-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.3E-25 3.2E-29 202.3 14.8 125 19-145 2-126 (126)
89 3c5r_A BARD-1, BRCA1-associate 99.9 2.8E-25 9.4E-30 209.5 7.8 133 8-144 1-133 (137)
90 3deo_A Signal recognition part 99.9 8.2E-25 2.8E-29 217.4 9.2 137 18-179 43-180 (183)
91 3c5r_A BARD-1, BRCA1-associate 99.9 2.3E-24 7.9E-29 203.1 9.2 130 42-179 1-130 (137)
92 2jab_A H10-2-G3; HER2, darpin, 99.9 2.1E-23 7E-28 196.3 14.6 124 578-703 13-136 (136)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.4E-23 1.2E-27 191.7 14.8 125 579-705 2-126 (126)
94 3ehr_A Osteoclast-stimulating 99.9 3.6E-24 1.2E-28 220.1 8.1 133 19-153 73-206 (222)
95 3ui2_A Signal recognition part 99.9 5.8E-24 2E-28 221.7 9.4 136 19-179 45-181 (244)
96 3aaa_C Myotrophin, protein V-1 99.9 1.5E-23 5.1E-28 193.4 10.0 117 17-135 5-121 (123)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-23 4.2E-28 225.8 10.8 140 19-166 151-299 (301)
98 3deo_A Signal recognition part 99.9 1.7E-22 5.8E-27 200.6 11.9 140 542-702 41-181 (183)
99 3aaa_C Myotrophin, protein V-1 99.9 1.2E-22 4.1E-27 187.3 9.4 114 49-164 4-117 (123)
100 3ui2_A Signal recognition part 99.9 2.4E-22 8.2E-27 209.4 12.3 142 543-705 43-185 (244)
101 3jue_A Arfgap with coiled-coil 99.9 9.1E-22 3.1E-26 215.8 12.7 144 19-164 199-348 (368)
102 1dcq_A PYK2-associated protein 99.9 7.1E-22 2.4E-26 209.6 10.9 125 19-145 130-263 (278)
103 2b0o_E UPLC1; arfgap, structur 99.9 7.3E-22 2.5E-26 211.9 10.9 137 547-691 153-297 (301)
104 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-21 4.5E-26 226.0 13.5 136 19-162 132-276 (497)
105 3ehr_A Osteoclast-stimulating 99.9 5.7E-22 1.9E-26 203.7 9.0 133 579-713 73-206 (222)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5E-21 1.7E-25 166.7 11.1 92 19-111 2-93 (93)
107 1dcq_A PYK2-associated protein 99.8 4E-20 1.4E-24 196.1 19.6 171 533-705 49-263 (278)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.2E-20 4E-25 164.3 10.9 93 51-145 1-93 (93)
109 3jue_A Arfgap with coiled-coil 99.8 3E-20 1E-24 203.7 12.9 143 579-723 199-347 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 4.3E-20 1.5E-24 213.3 14.5 127 581-709 134-269 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-20 4.2E-25 171.5 6.9 103 19-123 9-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.6E-20 5.4E-25 170.7 6.5 109 47-157 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 8.6E-18 2.9E-22 151.1 10.1 90 14-105 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.5E-17 5.2E-22 149.4 9.2 93 45-139 17-109 (110)
115 3j21_g 50S ribosomal protein L 69.8 1.6 5.4E-05 31.3 1.2 27 893-919 14-40 (51)
116 2ayj_A 50S ribosomal protein L 67.3 2 7E-05 31.1 1.3 28 892-919 18-45 (56)
117 2dkt_A Ring finger and CHY zin 41.8 5.5 0.00019 35.6 0.0 26 892-917 82-108 (143)
118 1joc_A EEA1, early endosomal a 32.5 9.3 0.00032 33.6 -0.0 22 894-915 70-93 (125)
119 1dvp_A HRS, hepatocyte growth 29.9 11 0.00038 36.9 0.0 23 894-916 162-186 (220)
120 1wfk_A Zinc finger, FYVE domai 29.8 15 0.00052 29.9 0.8 24 892-915 8-33 (88)
121 1vfy_A Phosphatidylinositol-3- 29.7 9.4 0.00032 29.9 -0.4 22 894-915 12-35 (73)
122 1gp8_A Protein (scaffolding pr 28.1 37 0.0013 22.4 2.2 20 21-40 15-34 (40)
123 1y02_A CARP2, FYVE-ring finger 26.8 12 0.0004 32.5 -0.4 22 894-915 20-43 (120)
124 2cr8_A MDM4 protein; ZF-ranbp 26.4 24 0.00083 24.8 1.2 19 895-913 13-31 (53)
125 1x4u_A Zinc finger, FYVE domai 26.1 12 0.0004 30.2 -0.5 22 894-915 15-38 (84)
126 2yw8_A RUN and FYVE domain-con 24.2 14 0.00047 29.7 -0.4 22 894-915 20-43 (82)
127 1z2q_A LM5-1; membrane protein 23.6 14 0.00049 29.7 -0.4 23 893-915 21-45 (84)
128 3zyq_A Hepatocyte growth facto 23.4 16 0.00054 35.9 -0.2 23 894-916 165-189 (226)
129 2c6a_A Ubiquitin-protein ligas 21.8 34 0.0012 23.6 1.2 19 895-913 15-33 (46)
130 3j20_Y 30S ribosomal protein S 20.9 20 0.00067 25.6 -0.1 22 893-914 19-44 (50)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-62 Score=561.19 Aligned_cols=388 Identities=26% Similarity=0.330 Sum_probs=352.4
Q ss_pred ccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCC
Q psy3899 6 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85 (923)
Q Consensus 6 ~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g 85 (923)
+.|+++|..+.. |.||||+||..|+.++|++|+++|++++.+|..|.||||+||..|+.+++++|+++|+++|.+|.+|
T Consensus 2 ~~g~~~~~~~~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 80 (437)
T 1n11_A 2 SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80 (437)
T ss_dssp --------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred CCCCCccccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence 479999998876 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 165 (923)
Q Consensus 86 ~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 165 (923)
.||||+|+..|+ .+++++|+++|++++..|. .|.||||+|+..|+.++|++|++++++.+..+..|.||||+|+..|+
T Consensus 81 ~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 81 QTPLHCAARIGH-TNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp CCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHCCC-HHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 999999999995 9999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy3899 166 APWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGT 245 (923)
Q Consensus 166 ~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (923)
.+ ++++|++...
T Consensus 159 ~~-----~v~~Ll~~g~--------------------------------------------------------------- 170 (437)
T 1n11_A 159 VR-----VAELLLERDA--------------------------------------------------------------- 170 (437)
T ss_dssp HH-----HHHHHHHTTC---------------------------------------------------------------
T ss_pred HH-----HHHHHHhCCC---------------------------------------------------------------
Confidence 99 8888876000
Q ss_pred hccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHH
Q psy3899 246 VMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELA 325 (923)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (923)
++.
T Consensus 171 ------------------------------------------------------------~~~----------------- 173 (437)
T 1n11_A 171 ------------------------------------------------------------HPN----------------- 173 (437)
T ss_dssp ------------------------------------------------------------CTT-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred hcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3899 326 ERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKC 405 (923)
Q Consensus 326 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~ 405 (923)
T Consensus 174 -------------------------------------------------------------------------------- 173 (437)
T 1n11_A 174 -------------------------------------------------------------------------------- 173 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcc
Q psy3899 406 QFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPF 485 (923)
Q Consensus 406 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 485 (923)
..+..|.|||
T Consensus 174 ----------------------------------------------------------------------~~~~~g~t~L 183 (437)
T 1n11_A 174 ----------------------------------------------------------------------AAGKNGLTPL 183 (437)
T ss_dssp ----------------------------------------------------------------------CCCSSCCCHH
T ss_pred ----------------------------------------------------------------------CCCCCCCCHH
Confidence 0022357899
Q ss_pred ccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHH
Q psy3899 486 HRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI 565 (923)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 565 (923)
|.|+..+. .+.++.|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus 184 ~~A~~~~~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 184 HVAVHHNN-------------------------------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHTTC-------------------------------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCC-------------------------------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 98887765 78888999999999999999999999999999999999999
Q ss_pred hCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC
Q psy3899 566 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645 (923)
Q Consensus 566 ~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 645 (923)
+.|++++..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|+++|++++.+|..|
T Consensus 233 ~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 311 (437)
T 1n11_A 233 QYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311 (437)
T ss_dssp HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC
T ss_pred HcCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC
Confidence 999999876554 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 725 (923)
Q Consensus 646 ~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~ 725 (923)
+||||+|+..| +.+++++|+++|++++.+|. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||+++|.+.+.
T Consensus 312 ~t~L~~A~~~g-~~~~v~~Ll~~gad~n~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 312 YTPLHVASHYG-NIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp CCHHHHHHHSS-CSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcC-cHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence 99999999988 89999999999999999998 99999999999999999999999999999999999999999998754
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-57 Score=521.80 Aligned_cols=372 Identities=25% Similarity=0.306 Sum_probs=345.9
Q ss_pred CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80 (923)
Q Consensus 1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~ 80 (923)
|++|+++|+++|..+.. |.||||+||..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++++.
T Consensus 30 v~~Ll~~g~~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 108 (437)
T 1n11_A 30 VKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108 (437)
T ss_dssp HHHHHHTTCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred HHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC
Confidence 57899999999999876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q psy3899 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL 160 (923)
Q Consensus 81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A 160 (923)
.|..|.||||+|+..|+ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 109 ~~~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 186 (437)
T 1n11_A 109 ATTAGHTPLHIAAREGH-VETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186 (437)
T ss_dssp CCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHH
T ss_pred CCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999995 9999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy3899 161 EENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM 240 (923)
Q Consensus 161 ~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (923)
+..|+.+ ++++|++...
T Consensus 187 ~~~~~~~-----~v~~Ll~~g~---------------------------------------------------------- 203 (437)
T 1n11_A 187 VHHNNLD-----IVKLLLPRGG---------------------------------------------------------- 203 (437)
T ss_dssp HHTTCHH-----HHHHHGGGTC----------------------------------------------------------
T ss_pred HHcCCHH-----HHHHHHhCCC----------------------------------------------------------
Confidence 9999999 8888875000
Q ss_pred HHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHH
Q psy3899 241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRY 320 (923)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (923)
++.
T Consensus 204 -----------------------------------------------------------------~~~------------ 206 (437)
T 1n11_A 204 -----------------------------------------------------------------SPH------------ 206 (437)
T ss_dssp -----------------------------------------------------------------CSC------------
T ss_pred -----------------------------------------------------------------CCC------------
Confidence 000
Q ss_pred HHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899 321 IIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKY 400 (923)
Q Consensus 321 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 400 (923)
T Consensus 207 -------------------------------------------------------------------------------- 206 (437)
T 1n11_A 207 -------------------------------------------------------------------------------- 206 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCC
Q psy3899 401 WKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ 480 (923)
Q Consensus 401 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (923)
.+...
T Consensus 207 ---------------------------------------------------------------------------~~~~~ 211 (437)
T 1n11_A 207 ---------------------------------------------------------------------------SPAWN 211 (437)
T ss_dssp ---------------------------------------------------------------------------CCCTT
T ss_pred ---------------------------------------------------------------------------CcCCC
Confidence 00223
Q ss_pred CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHH
Q psy3899 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEI 560 (923)
Q Consensus 481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~ 560 (923)
|.||||.|+..+. .+.++.|++.|++++..+..|.||||+|+..|+.++
T Consensus 212 g~t~L~~A~~~~~-------------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 260 (437)
T 1n11_A 212 GYTPLHIAAKQNQ-------------------------------VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260 (437)
T ss_dssp CCCHHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHcCC-------------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 5688888887665 788999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCc
Q psy3899 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640 (923)
Q Consensus 561 v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~ 640 (923)
+++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++|.
T Consensus 261 v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 261 VALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHHTTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred HHHHHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence 99999999999876554 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 704 (923)
Q Consensus 641 ~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga 704 (923)
+|..|+||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|.....
T Consensus 340 ~~~~g~t~L~~A~~~g-~~~iv~~Ll~~ga~~~~~~~-~g~t~l~~A~~~g~~~~~~~l~~~~~ 401 (437)
T 1n11_A 340 KTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRLGYISVTDVLKVVTD 401 (437)
T ss_dssp CCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCS-SSCCHHHHHHHTTCHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHCC-hHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhccc
Confidence 9999999999999998 89999999999999999998 99999999999999999999976543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.5e-46 Score=410.60 Aligned_cols=299 Identities=25% Similarity=0.262 Sum_probs=266.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
|+||||.||+.|++++|++||++|+++|.++.+ |+||||+||..||.++|++|+++|++++.++..+.+|++.++..+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~- 103 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG- 103 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc-
Confidence 789999999999999999999999999998764 899999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
...++..+++.+++++..|. .|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~----------------------- 159 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE----------------------- 159 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------------
T ss_pred cchhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc-----------------------
Confidence 49999999999999999999 999999999999999999999999988654332110
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy3899 178 TELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILP 257 (923)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (923)
T Consensus 160 -------------------------------------------------------------------------------- 159 (337)
T 4g8k_A 160 -------------------------------------------------------------------------------- 159 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCcccc
Q psy3899 258 LPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCS 337 (923)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 337 (923)
T Consensus 160 -------------------------------------------------------------------------------- 159 (337)
T 4g8k_A 160 -------------------------------------------------------------------------------- 159 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHH
Q psy3899 338 TCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417 (923)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 417 (923)
T Consensus 160 -------------------------------------------------------------------------------- 159 (337)
T 4g8k_A 160 -------------------------------------------------------------------------------- 159 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccccccccccccc
Q psy3899 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFT 497 (923)
Q Consensus 418 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 497 (923)
T Consensus 160 -------------------------------------------------------------------------------- 159 (337)
T 4g8k_A 160 -------------------------------------------------------------------------------- 159 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHh-CCCcccccCC
Q psy3899 498 GWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS-QGAIVDAIGG 576 (923)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~ 576 (923)
+.+..+..|.||||+|+..|+.+++++|++ .|++++..+.
T Consensus 160 ---------------------------------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~ 200 (337)
T 4g8k_A 160 ---------------------------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200 (337)
T ss_dssp -------------------------------------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT
T ss_pred ---------------------------------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC
Confidence 011234578999999999999999999995 6999998765
Q ss_pred CCCchHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHH
Q psy3899 577 DLQATPLHWATRQGH----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW 651 (923)
Q Consensus 577 ~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~ 651 (923)
. |.||+|.++..++ .+++++|+++|++++.+|..|.||||+|++.|+.++++.|++. |++++.+|..|+||||+
T Consensus 201 ~-g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~ 279 (337)
T 4g8k_A 201 M-GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 279 (337)
T ss_dssp T-SCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH
T ss_pred C-CCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH
Confidence 5 9999998876544 4688999999999999999999999999999999999999986 89999999999999999
Q ss_pred HHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy3899 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709 (923)
Q Consensus 652 a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 709 (923)
|+..| +.+++++|+++|+++|. .||||+|+.+|+.++|++||++|||+|..
T Consensus 280 A~~~g-~~~iv~~Ll~~GAd~n~------~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 280 AVELK-LKKIAELLCKRGASTDC------GDLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTT-CHHHHHHHHTTSCSSTT------CCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHcC-CHHHHHHHHHCCCCCCC------CCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 99998 89999999999999864 46999999999999999999999999864
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.2e-45 Score=406.09 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=147.2
Q ss_pred ccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC
Q psy3899 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 82 (923)
Q Consensus 4 Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d 82 (923)
|.+.+++.+..+.. |.|+||.||+.|+.+.|+.|+.. +++++.+|..|+||||+|+..|+.++|++|+++|++++.+|
T Consensus 10 l~~~~~~~~~~~~~-~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 88 (351)
T 3utm_A 10 LADPSAKAVLTGEY-KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88 (351)
T ss_dssp --CHHHHHHHHHHH-HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ccCCceeeeeeccc-cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 45566677776655 99999999999999999999876 89999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHh
Q psy3899 83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 162 (923)
Q Consensus 83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~ 162 (923)
..|.||||+|+..|+ .+++++|+++|++++..|. .|.||||+|+..|+.++|++|+++|++++..+..|.||+++|+.
T Consensus 89 ~~g~t~L~~A~~~g~-~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~ 166 (351)
T 3utm_A 89 KGGLVPLHNACSYGH-YEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166 (351)
T ss_dssp TTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred CCCCcHHHHHHHCCC-HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence 999999999999995 9999999999999999998 99999999999999999999999999999999999999999886
Q ss_pred hc
Q psy3899 163 NI 164 (923)
Q Consensus 163 ~g 164 (923)
.+
T Consensus 167 ~~ 168 (351)
T 3utm_A 167 PE 168 (351)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4e-42 Score=378.99 Aligned_cols=164 Identities=26% Similarity=0.296 Sum_probs=152.7
Q ss_pred CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80 (923)
Q Consensus 1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~ 80 (923)
|++||++|+|||.+++..|.||||+||..|+.++|++||++|++++.+|..+.+|++.|+..++..+++.+++.+++++.
T Consensus 41 V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T 4g8k_A 41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE 120 (337)
T ss_dssp HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred HHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhh
Confidence 57899999999999887799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccc---------cCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCCCC
Q psy3899 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------IHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPN 150 (923)
Q Consensus 81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~---------~~g~T~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~ 150 (923)
.|..|.||||+|+..|+ .+++++|+++|++++..+. ..|.||||+|+..|+.++|++|++ .|++++.+|
T Consensus 121 ~d~~g~t~l~~A~~~~~-~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d 199 (337)
T 4g8k_A 121 CDFYGFTAFMEAAVYGK-VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199 (337)
T ss_dssp BCTTCCBHHHHHHHTTC-HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred hccCCCCHHHHHHHcCc-HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence 99999999999999994 9999999999999875432 158999999999999999999996 589999999
Q ss_pred CCCCChHHHHHhhcC
Q psy3899 151 AQGLTPFMLLEENIG 165 (923)
Q Consensus 151 ~~g~t~L~~A~~~g~ 165 (923)
..|.|+++.++..+.
T Consensus 200 ~~g~t~l~~~~~~~~ 214 (337)
T 4g8k_A 200 NMGRNALIHALLSSD 214 (337)
T ss_dssp TTSCCHHHHHHHHSC
T ss_pred CCCCcHHHHHHHHcC
Confidence 999999998876543
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-41 Score=365.68 Aligned_cols=129 Identities=24% Similarity=0.286 Sum_probs=124.0
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLM-DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
|.||||.|++.|+.++|+.|++.|++++.+ +..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 83 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG- 83 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-
Confidence 889999999999999999999999999988 888999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 149 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 149 (923)
+.+++++|+++|++++..|. .|.||||+|+..|+.+++++|+++|++++..
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 134 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence 59999999999999999998 9999999999999999999999999887554
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.8e-42 Score=381.35 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=122.6
Q ss_pred HcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCccccccc
Q psy3899 40 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118 (923)
Q Consensus 40 ~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~ 118 (923)
+.+++.+..+..|.|+||.||+.|+.+.++.|+.. +++++.+|..|.||||+|+..|+ .+++++|+++|++++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~- 89 (351)
T 3utm_A 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR-VRIVQLLLQHGADVHAKDK- 89 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-
T ss_pred CCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCccCC-
Confidence 33445555677889999999999999999988875 89999999999999999999994 9999999999999999999
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 119 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 119 ~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
.|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+ ++++|++
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~ 145 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE-----VCSLLLS 145 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH-----HHHHHHH
Confidence 9999999999999999999999999999999999999999999999888 8888876
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-40 Score=356.47 Aligned_cols=123 Identities=22% Similarity=0.250 Sum_probs=117.2
Q ss_pred CCCChHHHHHHHhCcHHHHHHHHHCCCccccc-CCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHH
Q psy3899 50 SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ-DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 128 (923)
Q Consensus 50 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~ 128 (923)
.+|.||||.|++.|+.+++++|+++|++++.. +..|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~ 80 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLRHGADPVLRKK-NGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHH
Confidence 35889999999999999999999999999998 888999999999999 59999999999999999998 9999999999
Q ss_pred HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 129 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 129 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+ ++++|++
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~~~~Ll~ 126 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK-----ALKFLYK 126 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH-----HHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH-----HHHHHHH
Confidence 999999999999999999999999999999999999888 8888776
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-40 Score=372.32 Aligned_cols=171 Identities=26% Similarity=0.328 Sum_probs=146.6
Q ss_pred HhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCC---CcccccCCCCCchHHHHHHHcC---CHHHHHHHHHCCCCCC
Q psy3899 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG---AIVDAIGGDLQATPLHWATRQG---HLDSVVLLIQHGADPT 606 (923)
Q Consensus 533 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~~ 606 (923)
+.|++++..|..|.||||+|+..|+.+++++|++++ ++++..+.. |.||||+|+..+ +.+++++|+++|++++
T Consensus 187 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~ 265 (373)
T 2fo1_E 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVD 265 (373)
T ss_dssp HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS
T ss_pred HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHHCCCCcc
Confidence 345566777788889999999999999999998887 677765544 889999988887 7888999999888887
Q ss_pred C--------CCCCCChHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCccccc
Q psy3899 607 L--------MDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677 (923)
Q Consensus 607 ~--------~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~ 677 (923)
. .|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..| +.+++++|+++|++++.+|.
T Consensus 266 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gad~~~~d~ 344 (373)
T 2fo1_E 266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA 344 (373)
T ss_dssp CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCS
T ss_pred cccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccCCCC
Confidence 5 5778999999999999999999999875 999999999999999999888 89999999999999999998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899 678 IHGNVALHWAIYAKNHVAITTLVSHTSSL 706 (923)
Q Consensus 678 ~~g~TpLh~A~~~~~~~~v~~Ll~~gad~ 706 (923)
.|+||||+|+.+|+.+++++|+++|++.
T Consensus 345 -~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 345 -TDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp -SSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred -CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 8999999999999999999999998763
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=346.51 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=109.2
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcC-----------CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC
Q psy3899 16 GDLQATPLHWATRQGHLDSVVLLIQHG-----------ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 84 (923)
Q Consensus 16 ~~~g~T~Lh~Aa~~g~~~~V~~Ll~~g-----------a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~ 84 (923)
...|.|+||+|+..|+.+.+..++..+ -.++.+|.+|+||||+||..|+.+++++|+++|++++.+|.+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 345899999999999987777765442 235668899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899 85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164 (923)
Q Consensus 85 g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g 164 (923)
|.||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++..+ .|.||||+|+..|
T Consensus 92 g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g 168 (285)
T 3d9h_A 92 HVSPLHEACLGG-HLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 168 (285)
T ss_dssp CCCHHHHHHHTT-CHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT
T ss_pred CCCHHHHHHHCC-cHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC
Confidence 999999999999 49999999999999999998 99999999999999999999999998876544 4788888887776
Q ss_pred CCC
Q psy3899 165 GAP 167 (923)
Q Consensus 165 ~~~ 167 (923)
+.+
T Consensus 169 ~~~ 171 (285)
T 3d9h_A 169 HVE 171 (285)
T ss_dssp CHH
T ss_pred CHH
Confidence 555
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.4e-39 Score=359.22 Aligned_cols=193 Identities=23% Similarity=0.293 Sum_probs=181.8
Q ss_pred HHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC---CCCC
Q psy3899 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG---ADPT 606 (923)
Q Consensus 530 ~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g---~~~~ 606 (923)
.+++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++| ++++
T Consensus 151 ~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 229 (373)
T 2fo1_E 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229 (373)
T ss_dssp HHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS
T ss_pred HHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCccccChh
Confidence 355778899999999999999999999999999999999999977654 999999999999999999999998 8999
Q ss_pred CCCCCCChHHHHHHHcC---cHHHHHHHHHcCCCCCc--------cCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcc
Q psy3899 607 LMDSEGSTCIHQAAQFG---HTRIVAYLVAKGINVNL--------QDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTI 674 (923)
Q Consensus 607 ~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~ 674 (923)
..|..|.||||+|+..+ +.+++++|+++|++++. .|..|.||||+|+..| +.+++++|++.+ ++++.
T Consensus 230 ~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCCCTTC
T ss_pred hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC-CHHHHHHHHHhcCCCccC
Confidence 99999999999999998 89999999999999886 6779999999999988 899999999876 99999
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899 675 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 725 (923)
Q Consensus 675 ~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~ 725 (923)
+|. .|+||||+|+..|+.++|++|+++|++++.+|..|+||+++|+.+++
T Consensus 309 ~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 309 QDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp CCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 998 99999999999999999999999999999999999999999999864
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=336.62 Aligned_cols=146 Identities=24% Similarity=0.245 Sum_probs=125.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
|.||||+||..|+.++|+.|++.|++++.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~ 81 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-S 81 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-C
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999988 4
Q ss_pred CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 167 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 167 (923)
.+++++|+++|++++..+ .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 82 ~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 148 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 148 (261)
T ss_dssp HHHHHHHHHTTCCSSCSC--TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHH
Confidence 899999999999888644 5889999999999999999999888887777777777777776665444
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.4e-39 Score=362.68 Aligned_cols=163 Identities=24% Similarity=0.295 Sum_probs=143.8
Q ss_pred cCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCC
Q psy3899 7 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 86 (923)
Q Consensus 7 ~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~ 86 (923)
.+.+++..|.. |.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++. .+|.
T Consensus 9 ~~~~~~~~d~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~ 85 (364)
T 3ljn_A 9 PKLNRIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQ 85 (364)
T ss_dssp -------CCHH-HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTB
T ss_pred cCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCC
Confidence 45678888766 99999999999999999999999999999999999999999999999999999999996655 4699
Q ss_pred cHHHHHHHhcCCCchhHHHHhc----CCCccc-----------------ccccCCCcHHHHHHHhC--cHHHHHHHHhcC
Q psy3899 87 TALMWSAYKVFSLDPTRLLITF----GASTTI-----------------QDKIHGNVALHWAIYAK--NHVAITTLVSHT 143 (923)
Q Consensus 87 TpL~~Aa~~g~~~~vv~lLl~~----ga~~~~-----------------~d~~~g~T~L~~A~~~g--~~~iv~~Ll~~g 143 (923)
||||+|+..|+ .+++++|++. |++++. .|. .|.||||+|+..| +.++|++|+++|
T Consensus 86 t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~g 163 (364)
T 3ljn_A 86 KPIHLAVMANK-TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLG 163 (364)
T ss_dssp CHHHHHHHTTC-HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred CHHHHHHHcCC-HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence 99999999995 9999999999 888887 888 8999999999999 999999999999
Q ss_pred CCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 144 SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 144 a~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
++++.+|..|.||||+|+..|+.+ ++++|++
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~-----~v~~Ll~ 194 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNRE-----ALDLMMD 194 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence 999999999999999999988887 7777665
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-39 Score=361.77 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=142.1
Q ss_pred CCCCCCCCcHhHHHHHcC--cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCC
Q psy3899 539 NEPDSETVTLLHWAAINN--RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD-----PTLMDSE 611 (923)
Q Consensus 539 ~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~ 611 (923)
+..|..|.||||+|+..| +.+++++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++ ++..|..
T Consensus 132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210 (364)
T ss_dssp EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence 345567889999999999 899999999999998876544 88999999999999999999988888 8888899
Q ss_pred CChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcc------------cccCC
Q psy3899 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI------------QDKIH 679 (923)
Q Consensus 612 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~------------~d~~~ 679 (923)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++. .+. .
T Consensus 211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~ 288 (364)
T 3ljn_A 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQACPYHNGTTVLPDR-V 288 (364)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC-CHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGG-C
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC-hHHHHHHHHHcCCchhhhcCcccCcccccccc-c
Confidence 999999999999999999999999999999999999999999887 88999999998877543 344 7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899 680 GNVALHWAIYAKNHVAITTLVSHTSSLE 707 (923)
Q Consensus 680 g~TpLh~A~~~~~~~~v~~Ll~~gad~~ 707 (923)
|+|||++|+..|+.+.+..|++.++|..
T Consensus 289 ~~~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 289 VWLDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp CCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccCHHHHHHHHHHHHHHH
Confidence 9999999999999998888888876543
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=337.71 Aligned_cols=116 Identities=16% Similarity=0.003 Sum_probs=53.5
Q ss_pred CCCChHHHHHHHhCcHHHHHHHHHCC-----------CcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCccccccc
Q psy3899 50 SEGSTCIHQAAQFGHTRIVAYLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118 (923)
Q Consensus 50 ~~g~TpLh~Aa~~g~~~iv~~Ll~~g-----------a~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~ 118 (923)
..|.|+||+|+..|+.+.+..+++.+ ..++.+|.+|+||||+||..| +.+++++|++.|++++.+|.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~~~- 90 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA- 90 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTT-CHHHHHHHHHTTCCSCEECT-
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-
Confidence 45677777777777755555544432 124455566666666666666 36666666666666666665
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899 119 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 167 (923)
Q Consensus 119 ~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 167 (923)
.|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~ 139 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 139 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence 6666666666666666666666666665555555555555555554433
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=333.14 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHh
Q psy3899 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130 (923)
Q Consensus 51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~ 130 (923)
+|+||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQVNGVTA-DWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHc
Confidence 5899999999999999999999999999999999999999999999 49999999999999999998 999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899 131 KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 167 (923)
Q Consensus 131 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 167 (923)
|+.++|++|+++|++++. +..|.||||+|+..|+.+
T Consensus 80 ~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~ 115 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE 115 (261)
T ss_dssp TCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHH
Confidence 999999999999887754 334667777766665444
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.4e-38 Score=335.48 Aligned_cols=124 Identities=22% Similarity=0.212 Sum_probs=104.2
Q ss_pred HhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy3899 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEG 612 (923)
Q Consensus 533 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g 612 (923)
..+.+++.++..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.++|++|+++|++++.+|..|
T Consensus 146 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g 225 (282)
T 1oy3_D 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225 (282)
T ss_dssp CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence 34567888999999999999999999999999999999998876669999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhh
Q psy3899 613 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656 (923)
Q Consensus 613 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~ 656 (923)
.||||+|++.|+.+++++|+++|++++.+|..|.|||++|....
T Consensus 226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 99999999999999999999999999999999999999988654
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.6e-37 Score=323.59 Aligned_cols=98 Identities=29% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q psy3899 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 615 (923)
Q Consensus 536 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 615 (923)
++++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226 (253)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence 445556667778888888888888888888888887765544 7888888888888888888888888888888888888
Q ss_pred HHHHHHcCcHHHHHHHHHc
Q psy3899 616 IHQAAQFGHTRIVAYLVAK 634 (923)
Q Consensus 616 Lh~A~~~~~~~~v~~Ll~~ 634 (923)
||+|++.|+.+++++|...
T Consensus 227 l~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 227 RDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 8888888888888887765
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.2e-35 Score=309.67 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=106.6
Q ss_pred cccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcH
Q psy3899 9 AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 88 (923)
Q Consensus 9 ~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~Tp 88 (923)
.|++..+.. |.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 2 ~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 2 MNFKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCCSSCC-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred CCcccccCC-CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 355666554 7777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCchhHHHHhcC-CCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899 89 LMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164 (923)
Q Consensus 89 L~~Aa~~g~~~~vv~lLl~~g-a~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g 164 (923)
||+|+..| +.+++++|++.| ++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 81 L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 81 LHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155 (237)
T ss_dssp HHHHHHTT-CHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHcC-CHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence 77777776 377777777776 66666666 6777777777777777777777766665555555555555555443
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.9e-36 Score=314.97 Aligned_cols=150 Identities=25% Similarity=0.301 Sum_probs=111.0
Q ss_pred ccccCCCCccHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc
Q psy3899 12 DAIGGDLQATPLHWATRQGHLDSVVLLIQ----HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 87 (923)
Q Consensus 12 n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~----~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T 87 (923)
+.+|.+ |+||||+||..|+.++|+.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 3 ~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 3 TRADED-GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp ----CT-TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCC-CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 445554 8888888888888888888876 57788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCchhHHHHhcCC----CcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCC-CCCCChHHHHHh
Q psy3899 88 ALMWSAYKVFSLDPTRLLITFGA----STTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN-AQGLTPFMLLEE 162 (923)
Q Consensus 88 pL~~Aa~~g~~~~vv~lLl~~ga----~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~~ 162 (923)
|||+|+..| +.+++++|++.|+ +++..|. .|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 82 ~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 82 AAHLACEHR-SPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 888888777 4788888888776 6777777 77888888888888888888887777665554 445555555554
Q ss_pred hc
Q psy3899 163 NI 164 (923)
Q Consensus 163 ~g 164 (923)
.|
T Consensus 160 ~~ 161 (241)
T 1k1a_A 160 NN 161 (241)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.2e-36 Score=314.47 Aligned_cols=228 Identities=21% Similarity=0.208 Sum_probs=176.1
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcC
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE-PDSETVTLLHWAAINN 556 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g 556 (923)
+..|.||||.|+..+.... ....+....+.+.++.|++.|++++. .|..|.||||+|+..|
T Consensus 7 d~~g~tpL~~A~~~g~~~~------------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g 68 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLE------------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68 (253)
T ss_dssp ---------------------------------------------------------------CCCTTSCCHHHHHHHTT
T ss_pred CCCCCcHHHHHHhcccccc------------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcC
Confidence 4568899999998763110 00113344568999999999999865 4899999999999999
Q ss_pred cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899 557 RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635 (923)
Q Consensus 557 ~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 635 (923)
+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 69 ~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 69 RSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp CHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 999999999999999987654 9999999999999999999999987 99999999999999999999999999999999
Q ss_pred CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Q psy3899 636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT 715 (923)
Q Consensus 636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 715 (923)
++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus 148 ~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 225 (253)
T 1yyh_A 148 ADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225 (253)
T ss_dssp CCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCC
Confidence 999999999999999999998 89999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q psy3899 716 PFMLLEENIGA 726 (923)
Q Consensus 716 pl~~a~~~~~~ 726 (923)
|+++|+++++.
T Consensus 226 pl~~A~~~g~~ 236 (253)
T 1yyh_A 226 PRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCH
Confidence 99999998653
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.5e-35 Score=307.11 Aligned_cols=214 Identities=27% Similarity=0.409 Sum_probs=204.3
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR 557 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~ 557 (923)
+..|.||||.|+..+. .+.++.|++.|++++..+..|.||||+|+..|+
T Consensus 8 ~~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 56 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGH-------------------------------VDICHMLVQAGANIDTCSEDQRTPLMEAAENNH 56 (237)
T ss_dssp SCCSCCHHHHHHHHTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHcCc-------------------------------HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC
Confidence 5678999999998875 788999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCC
Q psy3899 558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636 (923)
Q Consensus 558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~ 636 (923)
.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 57 ~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 135 (237)
T 3b7b_A 57 LEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135 (237)
T ss_dssp HHHHHHHHTTTCCCCCCCTT-SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999876654 999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Q psy3899 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716 (923)
Q Consensus 637 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 716 (923)
+++.+|..|.||||+|+..+ +.+++++|++.|++++.+|. .|.||||+|+..|+.+++++|+++|+|++.+|.+|+||
T Consensus 136 ~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 213 (237)
T 3b7b_A 136 DINIRDNEENICLHWAAFSG-CVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213 (237)
T ss_dssp CTTCCCTTSCCHHHHHHHHC-CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCCccCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence 99999999999999999998 89999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q psy3899 717 FMLLEENIG 725 (923)
Q Consensus 717 l~~a~~~~~ 725 (923)
+++|+.++.
T Consensus 214 l~~A~~~~~ 222 (237)
T 3b7b_A 214 LQCASLNSQ 222 (237)
T ss_dssp HHHSCTTCH
T ss_pred HHHHHHHHH
Confidence 999998753
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=320.25 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=70.9
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHHhCcH-HHHHHHHHCCCcccccCCCCCcHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGAD--------PTLMDSEGSTCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGMTAL 89 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~--------~~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~ga~vn~~d~~g~TpL 89 (923)
+.|||+.||..|+.++|++||+.|++ ++..|..|.||||.|+..++. +++++|++.|+++|.+|.+|+|||
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL 90 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL 90 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 56777777777777777777766654 334455556666666655543 355566666666666666666666
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 167 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 167 (923)
|+||..| +.+++++|++.|++++..+. .|.||+|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 91 h~A~~~g-~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 91 HVAALHG-RADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp HHHHHTT-CTTHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred HHHHHcC-cHHHHHHHHhcCCCcCccCC-CCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 6666655 35666666666666665555 5666666666666666666666655555555555555555555444333
No 24
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-35 Score=317.56 Aligned_cols=213 Identities=19% Similarity=0.162 Sum_probs=187.8
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCC---CCCCCCCCCcHhHHHHH
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQD---VNEPDSETVTLLHWAAI 554 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~Lh~A~~ 554 (923)
+..|.||||.|+..+. .+.++.|++.|++ ++.+|..|.||||+|+.
T Consensus 6 d~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~ 54 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQH-------------------------------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54 (282)
T ss_dssp CTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCC-------------------------------HHHHHHHHhcCCCcccccccCCCCCCHHHHHHH
Confidence 5678999999998876 7889999999998 88999999999999999
Q ss_pred cCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC------------------------------
Q psy3899 555 NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD------------------------------ 604 (923)
Q Consensus 555 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~------------------------------ 604 (923)
.|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 55 ~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (282)
T 1oy3_D 55 LGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133 (282)
T ss_dssp HTCHHHHHHHHHTTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------
T ss_pred cCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccc
Confidence 99999999999999999977654 99999999999999999999998765
Q ss_pred -----------------CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHhhCCcchHHHHH
Q psy3899 605 -----------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLI 666 (923)
Q Consensus 605 -----------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~t~Lh~a~~~~~~~~~~~~Ll 666 (923)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..+ +.+++++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll 212 (282)
T 1oy3_D 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-AASVLELLL 212 (282)
T ss_dssp ----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHH
T ss_pred cccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHH
Confidence 6778899999999999999999999999999999999865 999999999988 899999999
Q ss_pred hcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 724 (923)
Q Consensus 667 ~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~ 724 (923)
++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|.+|.||+++|....
T Consensus 213 ~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 213 KAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HTTCCTTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HcCCCCccccc-CCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 99999999998 9999999999999999999999999999999999999999998864
No 25
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=300.73 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=140.7
Q ss_pred cccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHH
Q psy3899 11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTAL 89 (923)
Q Consensus 11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL 89 (923)
++..|+. |.||||.|+..|+.++|+.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||
T Consensus 2 ~~~~d~~-~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 2 MTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCCSCG-GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred ccccccc-cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 4556655 9999999999999999999999999999999999999999999999999999999999988665 4599999
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 165 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 165 (923)
|+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus 81 ~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 81 HWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence 9999999 49999999999999999998 99999999999999999999999999999999999999999987654
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.7e-35 Score=304.57 Aligned_cols=146 Identities=22% Similarity=0.254 Sum_probs=112.9
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga-~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g 96 (923)
.++||||.||..|+.+.|+.|++.+. .++.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 36788888888888888888887753 35667888888888888888888888888888888888888888888888887
Q ss_pred CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 165 (923)
Q Consensus 97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 165 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 85 -~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 85 -XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp -CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred -HHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 48888888888888888877 78888888888888888888887777666555555555555554443
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.2e-35 Score=308.39 Aligned_cols=213 Identities=23% Similarity=0.289 Sum_probs=199.6
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHH----hcCCCCCCCCCCCcHhHHHH
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVE----AGQDVNEPDSETVTLLHWAA 553 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~Lh~A~ 553 (923)
+..|.||||.|+..+. .+.++.+++ .|.+++..|..|.||||+|+
T Consensus 6 d~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~ 54 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGN-------------------------------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54 (241)
T ss_dssp -CTTCCHHHHHHHTTC-------------------------------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred CCCCCcHHHHHHHcCC-------------------------------HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH
Confidence 5678999999998886 556666664 79999999999999999999
Q ss_pred HcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCcHHHHH
Q psy3899 554 INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA----DPTLMDSEGSTCIHQAAQFGHTRIVA 629 (923)
Q Consensus 554 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~Lh~A~~~~~~~~v~ 629 (923)
..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++ +++..|..|.||||+|+..|+.++++
T Consensus 55 ~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 133 (241)
T 1k1a_A 55 ITTLPSVVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133 (241)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHH
Confidence 999999999999999999987654 9999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHcCCCCCccC-CCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy3899 630 YLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI 708 (923)
Q Consensus 630 ~Ll~~g~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~ 708 (923)
+|+++|++++..| ..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.
T Consensus 134 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 134 LLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence 9999999999999 88999999999988 89999999999999999998 999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHhcc
Q psy3899 709 PNAQGLTPFMLLEENI 724 (923)
Q Consensus 709 ~d~~g~tpl~~a~~~~ 724 (923)
+|..|+||+++|++++
T Consensus 212 ~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 212 KNCHNDTPLMVARSRR 227 (241)
T ss_dssp CCTTSCCTTTTCSSHH
T ss_pred cCCCCCCHHHHHHhcC
Confidence 9999999999998864
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=315.15 Aligned_cols=197 Identities=26% Similarity=0.333 Sum_probs=159.0
Q ss_pred hhhHHHHHHhcCC--------CCCCCCCCCcHhHHHHHcCcH-HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHH
Q psy3899 525 LSDKYQFVEAGQD--------VNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 595 (923)
Q Consensus 525 ~~~~~~ll~~~~~--------~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v 595 (923)
.+.++.|++.|.+ ++..+..|.||||.|+..++. .++++|++.|+++|..+.. |+||||+|+..|+.++|
T Consensus 24 ~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~-G~TpLh~A~~~g~~~~v 102 (269)
T 4b93_B 24 LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD-GSSPLHVAALHGRADLI 102 (269)
T ss_dssp HHHHHHHHTCC----------------------------------------CCCCTTCCCTT-SCCHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCcHHHH
Confidence 7788888877764 567788899999999988875 5889999999999987655 99999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCccc
Q psy3899 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675 (923)
Q Consensus 596 ~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~ 675 (923)
++|+++|++++.++..|.||+|.|+..++.+++++|++.|++++.+|..|+||||+|+..| +.+++++|+++|+++|.+
T Consensus 103 ~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g-~~~~v~~Ll~~gadvn~~ 181 (269)
T 4b93_B 103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG-HHELVALLLQHGASINAS 181 (269)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-CGGGHHHHHHTTCCTTCB
T ss_pred HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHHCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899 676 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 724 (923)
Q Consensus 676 d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~ 724 (923)
|. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+|||++|++++
T Consensus 182 ~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 182 NN-KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp CT-TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred cc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 98 9999999999999999999999999999999999999999998764
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.1e-35 Score=315.75 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=133.8
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCc---------cCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q psy3899 24 HWATRQGHLDSVVLLIQHGADPTL---------MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 94 (923)
Q Consensus 24 h~Aa~~g~~~~V~~Ll~~ga~~~~---------~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~ 94 (923)
+.++..|+.+.++.++..+.++.. .+.+|.||||.||..|+.++|++|+++|+++|..|..|.||||+||.
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI 82 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 467888889999888887554433 23367799999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhh
Q psy3899 95 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATV 174 (923)
Q Consensus 95 ~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v 174 (923)
.| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..++.+ ++
T Consensus 83 ~g-~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~ 155 (299)
T 1s70_B 83 DD-NVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE-----LL 155 (299)
T ss_dssp TT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHH-----HH
T ss_pred cC-CHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHH-----HH
Confidence 99 49999999999999999999 9999999999999999999999999999999999999999999988777 77
Q ss_pred hHHHH
Q psy3899 175 DKITE 179 (923)
Q Consensus 175 ~~L~~ 179 (923)
+.++.
T Consensus 156 ~~ll~ 160 (299)
T 1s70_B 156 QNEVN 160 (299)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4e-35 Score=303.55 Aligned_cols=210 Identities=22% Similarity=0.296 Sum_probs=195.3
Q ss_pred CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcCcHH
Q psy3899 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE-PDSETVTLLHWAAINNRIE 559 (923)
Q Consensus 481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g~~~ 559 (923)
|.||||.|+..+. .+.++.+++.+.++.. .|..|.||||+|+..|+.+
T Consensus 2 g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 50 (228)
T 2dzn_A 2 SNYPLHQACMENE-------------------------------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 50 (228)
T ss_dssp -CCHHHHHHHTTC-------------------------------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred CccHHHHHHHhCC-------------------------------HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHH
Confidence 5799999998775 7888999998887654 8999999999999999999
Q ss_pred HHHHHHhCC--CcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899 560 IMKYFISQG--AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG--ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635 (923)
Q Consensus 560 ~v~~Ll~~g--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 635 (923)
++++|+++| .+++...+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 51 ~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 130 (228)
T 2dzn_A 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130 (228)
T ss_dssp HHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence 999999999 5565534556999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcccccCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCC
Q psy3899 636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQG 713 (923)
Q Consensus 636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g 713 (923)
++++.+|..|.||||+|+..+ +.+++++|++.| ++++.+|. .|+||||+|+..|+.+++++|+ ++|+|++.+|.+|
T Consensus 131 ~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g 208 (228)
T 2dzn_A 131 ASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208 (228)
T ss_dssp CCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred CCccccCCCCCCHHHHHHHcC-CHHHHHHHHhcCcccccCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence 999999999999999999988 899999999999 99999998 9999999999999999999999 9999999999999
Q ss_pred CCHHHHHHhc
Q psy3899 714 LTPFMLLEEN 723 (923)
Q Consensus 714 ~tpl~~a~~~ 723 (923)
+||+++|.+.
T Consensus 209 ~t~l~~A~~~ 218 (228)
T 2dzn_A 209 AKAEDVALNE 218 (228)
T ss_dssp CBGGGGCSST
T ss_pred CcHHHHHHHH
Confidence 9999999764
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2e-35 Score=316.54 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=122.5
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhc
Q psy3899 29 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108 (923)
Q Consensus 29 ~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ 108 (923)
..+.+.|+.+|..+ +++.+|.+|+||||+|+..|+.++|++|+++|++++.+| |.||||+|+..| +.+++++|+++
T Consensus 9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g-~~~~v~~Ll~~ 84 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLE-DTKIVKILLFS 84 (285)
T ss_dssp GCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSS-SCHHHHHHHHT
T ss_pred hcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcC-CHHHHHHHHHC
Confidence 34444444444444 688999999999999999999999999999999999885 899999999999 49999999999
Q ss_pred CCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCC-CChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG-LTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 109 ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..| .||||+|+..|+.+ ++++|++
T Consensus 85 ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~-----~v~~Ll~ 150 (285)
T 3kea_A 85 GLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS-----IVSYFLS 150 (285)
T ss_dssp TCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH-----HHHHHHT
T ss_pred CCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence 999999998 99999999999999999999999999999999888 79999999888777 6666654
No 32
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3e-36 Score=329.72 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=142.1
Q ss_pred CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCcc-----------------CCCCChHHHHHHHhC
Q psy3899 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM-----------------DSEGSTCIHQAAQFG 63 (923)
Q Consensus 1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~-----------------d~~g~TpLh~Aa~~g 63 (923)
|++|+++|++++..+.. |.|+++ |+.++|+.||++|++++.. .....+.+|+|+..+
T Consensus 35 v~~ll~~ga~i~~~~~~-g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~ 108 (327)
T 1sw6_A 35 TSDFLSSPLKIMKALPS-PVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL 108 (327)
T ss_dssp CCSTTTSSCCCEECBCC-CCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHH
T ss_pred HHHHhhCCcccccCCCC-CCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhh
Confidence 68999999999999876 999988 9999999999999887761 112223468999999
Q ss_pred cHHHHHHHHHCCCcccc-cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCc---HHHHHHH
Q psy3899 64 HTRIVAYLVAKGINVNL-QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN---HVAITTL 139 (923)
Q Consensus 64 ~~~iv~~Ll~~ga~vn~-~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~---~~iv~~L 139 (923)
..+++++|++.|+++|. +|.+|+||||+||..|+ .++|++|+++|++++.+|. .|.||||+|+..|+ .++++.|
T Consensus 109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~-~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~l 186 (327)
T 1sw6_A 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEAL 186 (327)
T ss_dssp HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHH
Confidence 99999999999999999 89999999999999995 9999999999999999999 99999999999998 7889999
Q ss_pred HhcC-CCCCCCCCCCCChHHHHHh----hcCCCCCchhhhhHHHH
Q psy3899 140 VSHT-SSLEIPNAQGLTPFMLLEE----NIGAPWLGKATVDKITE 179 (923)
Q Consensus 140 l~~g-a~~~~~~~~g~t~L~~A~~----~g~~~~~~~~~v~~L~~ 179 (923)
++.+ ++++.+|..|.||||+|+. .|+.+ ++++|++
T Consensus 187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~-----~v~~Ll~ 226 (327)
T 1sw6_A 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSA-----AAKYYLD 226 (327)
T ss_dssp HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHH-----HHHHHHH
T ss_pred HHhhhccccCCCCCCCCHHHHHHHHccccccHH-----HHHHHHH
Confidence 9887 7899999999999999999 67777 7887776
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.5e-36 Score=319.05 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=140.8
Q ss_pred cccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC
Q psy3899 3 YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 82 (923)
Q Consensus 3 ~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d 82 (923)
+|.+. ++|.+|.. |.||||+||..|+.++|++|+++|++++.+| |+||||+|+..|+.+++++|+++|++++.+|
T Consensus 18 lL~~~--~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 92 (285)
T 3kea_A 18 FLSSK--DTFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92 (285)
T ss_dssp HHHST--TTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred HHHhC--CCCccCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 45544 68888776 9999999999999999999999999999884 9999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCC-CcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899 83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG-NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 161 (923)
Q Consensus 83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g-~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~ 161 (923)
..|.||||+|+..| +.+++++|+++|++++.+|. .| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+
T Consensus 93 ~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~ 169 (285)
T 3kea_A 93 DKGNTALYYAVDSG-NMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI 169 (285)
T ss_dssp TTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH
T ss_pred CCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH
Confidence 99999999999999 49999999999999999998 88 89999999999999999999999865222 26777777777
Q ss_pred hhcCCC
Q psy3899 162 ENIGAP 167 (923)
Q Consensus 162 ~~g~~~ 167 (923)
..|+.+
T Consensus 170 ~~g~~~ 175 (285)
T 3kea_A 170 KNGHVD 175 (285)
T ss_dssp HTTCHH
T ss_pred HcChHH
Confidence 666555
No 34
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.7e-34 Score=297.02 Aligned_cols=210 Identities=26% Similarity=0.323 Sum_probs=197.2
Q ss_pred CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcC-CCCCCCCCCCcHhHHHHHcCcH
Q psy3899 480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQ-DVNEPDSETVTLLHWAAINNRI 558 (923)
Q Consensus 480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~A~~~g~~ 558 (923)
.+.+||+.|+..+. .+.++.+++.+. .++..|..|.||||+|+..|+.
T Consensus 5 ~~~~~l~~A~~~g~-------------------------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 53 (231)
T 3aji_A 5 VSNIMICNLAYSGK-------------------------------LDELKERILADKSLATRTDQDSRTALHWACSAGHT 53 (231)
T ss_dssp CSSSHHHHHHHHTC-------------------------------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCH
T ss_pred cccchHHHHHHhCC-------------------------------HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcH
Confidence 35688998888775 778888887654 5788899999999999999999
Q ss_pred HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCC
Q psy3899 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638 (923)
Q Consensus 559 ~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 638 (923)
+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 54 ~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 132 (231)
T 3aji_A 54 EIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132 (231)
T ss_dssp HHHHHHHHTTCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999987655 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q psy3899 639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFM 718 (923)
Q Consensus 639 ~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 718 (923)
+..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||++
T Consensus 133 ~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 210 (231)
T 3aji_A 133 DAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210 (231)
T ss_dssp TCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CCcCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 999999999999999998 99999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy3899 719 LLEEN 723 (923)
Q Consensus 719 ~a~~~ 723 (923)
+|.++
T Consensus 211 ~A~~~ 215 (231)
T 3aji_A 211 VAKGG 215 (231)
T ss_dssp HSCHH
T ss_pred HHHhh
Confidence 99875
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=293.72 Aligned_cols=217 Identities=52% Similarity=0.878 Sum_probs=205.7
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR 557 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~ 557 (923)
+..+.|||+.|+..+. .+.++.|++.|++++.++..|.||||+|+..|+
T Consensus 6 d~~~~~~l~~A~~~g~-------------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 54 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGI-------------------------------YERCRELVEAGYDVRQPDKENVTLLHWAAINNR 54 (240)
T ss_dssp SCGGGCCHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred ccccchHHHHHHHcCC-------------------------------hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCC
Confidence 4456789998887765 789999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q psy3899 558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637 (923)
Q Consensus 558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 637 (923)
.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 55 ~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 134 (240)
T 3eu9_A 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134 (240)
T ss_dssp HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC
Confidence 99999999999999987777799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q psy3899 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 717 (923)
Q Consensus 638 ~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 717 (923)
++..|..|.||||+|+..+...+++++|++.|++++..+...|+||||+|+..|+.+++++|+++|++++.+|..|+||+
T Consensus 135 ~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 214 (240)
T 3eu9_A 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214 (240)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHH
T ss_pred ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 99999999999999998886799999999999999999876899999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q psy3899 718 MLLEENIG 725 (923)
Q Consensus 718 ~~a~~~~~ 725 (923)
++|++.+.
T Consensus 215 ~~A~~~~~ 222 (240)
T 3eu9_A 215 DLAKQRKN 222 (240)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCc
Confidence 99999754
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-33 Score=290.21 Aligned_cols=165 Identities=25% Similarity=0.308 Sum_probs=151.5
Q ss_pred CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCC-ccc
Q psy3899 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVN 79 (923)
Q Consensus 1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga-~vn 79 (923)
|++|+++|++++...+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++++ +++
T Consensus 7 i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 86 (223)
T 2f8y_A 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86 (223)
T ss_dssp EETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTT
T ss_pred HHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 5789999999998755569999999999999999999999999999999999999999999999999999999987 899
Q ss_pred ccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHH
Q psy3899 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159 (923)
Q Consensus 80 ~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~ 159 (923)
..+..|.||||+|+..| +.+++++|+++|++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 87 ~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 164 (223)
T 2f8y_A 87 ARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164 (223)
T ss_dssp CCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred cCCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence 99999999999999999 49999999999999999998 99999999999999999999999999999999999999998
Q ss_pred HHhhcCCC
Q psy3899 160 LEENIGAP 167 (923)
Q Consensus 160 A~~~g~~~ 167 (923)
|+..|+.+
T Consensus 165 A~~~~~~~ 172 (223)
T 2f8y_A 165 AAREGSYE 172 (223)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 88776555
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-35 Score=322.19 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=161.8
Q ss_pred hhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCC---HHHHHHHHH
Q psy3899 525 LSDKYQFVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSVVLLIQ 600 (923)
Q Consensus 525 ~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~ 600 (923)
.+.++.+++.|+++|. +|..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+ .++++.|++
T Consensus 110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~~ll~ 188 (327)
T 1sw6_A 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLD 188 (327)
T ss_dssp HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHhcccccHHHHHHHHH
Confidence 3566677788999999 8999999999999999999999999999999977655 9999999999998 788888888
Q ss_pred CC-CCCCCCCCCCChHHHHHHH----cCcHHHHHHHHHc--------------------CCCCCccCCCCCcHHHHHHHh
Q psy3899 601 HG-ADPTLMDSEGSTCIHQAAQ----FGHTRIVAYLVAK--------------------GINVNLQDRNGMTALMWSAYK 655 (923)
Q Consensus 601 ~g-~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g~t~Lh~a~~~ 655 (923)
.+ ++++.+|..|.||||+|++ .|+.+++++|++. |++++.+|..|.||||+|+.
T Consensus 189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~- 267 (327)
T 1sw6_A 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD- 267 (327)
T ss_dssp HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-
T ss_pred hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-
Confidence 76 7899999999999999999 8999999999987 89999999999999999883
Q ss_pred hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723 (923)
Q Consensus 656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~ 723 (923)
+++|++. +++.+|. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+++
T Consensus 268 ------~~~Ll~~--~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 268 ------LKWIIAN--MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp ------HHHHHHH--TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred ------HHHHHHh--CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 7889888 6888998 999999999999999999999999999999999999999999875
No 38
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-33 Score=292.36 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=123.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCcHHHHHHHHHCC--Ccccc-cCCCCCcHHHHHH
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGADPTL-MDSEGSTCIHQAAQFGHTRIVAYLVAKG--INVNL-QDRNGMTALMWSA 93 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g--a~vn~-~d~~g~TpL~~Aa 93 (923)
.|+||||+||..|+.++|+.|++.|+++.. +|.+|+||||+|+..|+.+++++|+++| ++++. .|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 378999999999999999999988877654 8889999999999999999999999998 55666 7788889999888
Q ss_pred HhcCCCchhHHHHhcC--CCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899 94 YKVFSLDPTRLLITFG--ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 167 (923)
Q Consensus 94 ~~g~~~~vv~lLl~~g--a~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 167 (923)
..| +.+++++|++.| ++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 81 ~~~-~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 81 SVG-NLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp HHC-CHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HcC-CHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 888 488888888888 88888887 8888888888888888888888888888777777777777777666555
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-34 Score=308.81 Aligned_cols=196 Identities=28% Similarity=0.380 Sum_probs=184.1
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604 (923)
Q Consensus 525 ~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~ 604 (923)
.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 53 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~ 131 (299)
T 1s70_B 53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGAH 131 (299)
T ss_dssp HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence 88999999999999999999999999999999999999999999999987655 99999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCC--------------------------ccCCCCCcHHHHHHHhhC
Q psy3899 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN--------------------------LQDRNGMTALMWSAYKVF 657 (923)
Q Consensus 605 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~--------------------------~~d~~g~t~Lh~a~~~~~ 657 (923)
++.+|..|.||||+|+..++.++++.++.. |.+++ ..+..|.||||+|+..|
T Consensus 132 ~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g- 210 (299)
T 1s70_B 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG- 210 (299)
T ss_dssp TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHT-
T ss_pred CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCC-
Confidence 999999999999999999999999888764 55543 35678999999999998
Q ss_pred CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723 (923)
Q Consensus 658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~ 723 (923)
+.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||+++|.+.
T Consensus 211 ~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 211 YTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 89999999999999999998 999999999999999999999999999999999999999999753
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.8e-33 Score=287.67 Aligned_cols=198 Identities=23% Similarity=0.271 Sum_probs=187.2
Q ss_pred hhhHHHHHHhcCCCCCC-CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q psy3899 525 LSDKYQFVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 603 (923)
Q Consensus 525 ~~~~~~ll~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~ 603 (923)
.+.++.|++.|.+++.. |..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 56667788899998876 889999999999999999999999999999977554 9999999999999999999999987
Q ss_pred -CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCCh
Q psy3899 604 -DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 682 (923)
Q Consensus 604 -~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T 682 (923)
+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|++.|++++.+|. .|.|
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t 160 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-REET 160 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCcC
Confidence 89999999999999999999999999999999999999999999999999988 89999999999999999998 9999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899 683 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 725 (923)
Q Consensus 683 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~ 725 (923)
|||+|+..|+.+++++|+++|++++.+|..|.||+++|++++.
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998754
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.5e-32 Score=265.48 Aligned_cols=159 Identities=36% Similarity=0.452 Sum_probs=148.9
Q ss_pred cHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH
Q psy3899 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626 (923)
Q Consensus 547 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~ 626 (923)
++|+.||+.|+.++|+.|+++|++++..+.. |+||||+|+..++.+++++|+++|++++.+|..|.||||+|++.|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 5799999999999999999999999987655 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 706 (923)
Q Consensus 627 ~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~ 706 (923)
++++|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|. .|+||||+|+.+|+.+++++|+++||++
T Consensus 85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDSDGRTPLHHAAENG-HKEVVKLLISKGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 999999999999999999999999999998 89999999999999999998 9999999999999999999999999988
Q ss_pred CC
Q psy3899 707 EI 708 (923)
Q Consensus 707 ~~ 708 (923)
+.
T Consensus 163 e~ 164 (169)
T 4gpm_A 163 EH 164 (169)
T ss_dssp --
T ss_pred CC
Confidence 74
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.3e-32 Score=266.78 Aligned_cols=152 Identities=32% Similarity=0.444 Sum_probs=149.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 100 (923)
Q Consensus 21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~ 100 (923)
++|+.||+.|+.++|+.||++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..| +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g-~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-HKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC-CHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999 499
Q ss_pred hhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 101 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 101 vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
++++|+++|+++|.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|++.|+.+ ++++|++
T Consensus 85 ~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~-----iv~~Ll~ 157 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE-----VVKLLEK 157 (169)
T ss_dssp HHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHT
T ss_pred HHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999 9999998
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=8e-33 Score=287.94 Aligned_cols=216 Identities=25% Similarity=0.198 Sum_probs=191.5
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR 557 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~ 557 (923)
+..|.||||.|+..+..+.+..+.. .....+++++.+|..|.||||+|+..|+
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~---------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 57 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIR---------------------------QVKGDLAFLNFQNNLQQTPLHLAVITNQ 57 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC--------------------------------CCCCCCCCTTCCCHHHHHHHTTC
T ss_pred CCCCCchhHHHHHcCChhHHHHHHH---------------------------HhhccHHHhhccCCCCCCHHHHHHHcCC
Confidence 4568999999999998776665432 1223456899999999999999999999
Q ss_pred HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCChHHHHHHHcCcHHHHHHH
Q psy3899 558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD------PTLMDSEGSTCIHQAAQFGHTRIVAYL 631 (923)
Q Consensus 558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~A~~~~~~~~v~~L 631 (923)
.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|
T Consensus 58 ~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 136 (236)
T 1ikn_D 58 PEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136 (236)
T ss_dssp HHHHHCCCSCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999987654 99999999999999999999999987 466788999999999999999999999
Q ss_pred HHcCCCCCccCC-CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC--C
Q psy3899 632 VAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE--I 708 (923)
Q Consensus 632 l~~g~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~--~ 708 (923)
+++|++++.+|. .|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+.+|+.+++++|+++|++.. .
T Consensus 137 l~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 214 (236)
T 1ikn_D 137 VSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214 (236)
T ss_dssp HHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred HHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCcccC-CCCCHHHHHHccCchHHHHHHHHcchhhhhcC
Confidence 999999999998 9999999999988 89999999999999999998 99999999999999999999999999765 8
Q ss_pred CCCCCCCHHHHHHhc
Q psy3899 709 PNAQGLTPFMLLEEN 723 (923)
Q Consensus 709 ~d~~g~tpl~~a~~~ 723 (923)
++.+|.||.+.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 215 PESEDEESYDTESEF 229 (236)
T ss_dssp CCCCTTTCCCCC---
T ss_pred CccchHHHHhhhccc
Confidence 999999999887654
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=4.7e-32 Score=281.33 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=137.8
Q ss_pred hhhHHHHHHh-cCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccc----cCCCCCchHHHHHHHcCCHHHHHHHH
Q psy3899 525 LSDKYQFVEA-GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA----IGGDLQATPLHWATRQGHLDSVVLLI 599 (923)
Q Consensus 525 ~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~----~~~~~g~t~Lh~A~~~g~~~~v~~Ll 599 (923)
.+.++.|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++.. ..+..|.||||+|+..|+.+++++|+
T Consensus 16 ~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 95 (232)
T 2rfa_A 16 VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95 (232)
T ss_dssp HHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 6677777776 788888888888888888888888888888887777532 12334778888888888888888888
Q ss_pred HCCCCCCCCCC-------------CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchH----
Q psy3899 600 QHGADPTLMDS-------------EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPT---- 662 (923)
Q Consensus 600 ~~g~~~~~~d~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~---- 662 (923)
++|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+ +.+++
T Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~-~~~~~~~i~ 174 (232)
T 2rfa_A 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP-NKTFACQMY 174 (232)
T ss_dssp HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCS-CHHHHHHHH
T ss_pred hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-ChHHHHHHH
Confidence 88888777655 6788888888888888888888888888888888888888888776 66666
Q ss_pred HHHHhcCCCC------cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy3899 663 RLLITFGAST------TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 710 (923)
Q Consensus 663 ~~Ll~~ga~~------~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d 710 (923)
++|++.|++. +.+|. .|+||||+|+..|+.+++++|+++|++...+.
T Consensus 175 ~~Ll~~g~~~~~~~~~~~~~~-~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 175 NLLLSYDGGDHLKSLELVPNN-QGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HHHHHTTCSCSSCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHhcCCchhhhhhhccCCC-CCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 7788888777 46666 78888888888888888888888876554443
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5e-31 Score=273.57 Aligned_cols=180 Identities=29% Similarity=0.334 Sum_probs=169.2
Q ss_pred CCCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHH
Q psy3899 544 ETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP-----TLMDSEGSTCIH 617 (923)
Q Consensus 544 ~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~d~~g~t~Lh 617 (923)
.|.||||+|+..|+.+++++|++. |++++..+.. |+||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 9999987654 999999999999999999999999987 777889999999
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCccCC-------------CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHH
Q psy3899 618 QAAQFGHTRIVAYLVAKGINVNLQDR-------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684 (923)
Q Consensus 618 ~A~~~~~~~~v~~Ll~~g~~~~~~d~-------------~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpL 684 (923)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..| +.+++++|+++|++++.+|. .|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-SEEIVRLLIEHGADIRAQDS-LGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHH
Confidence 99999999999999999999998876 7999999999998 89999999999999999998 999999
Q ss_pred HHHHHcCCHHHH----HHHHHCCCCC------CCCCCCCCCHHHHHHhccCC
Q psy3899 685 HWAIYAKNHVAI----TTLVSHTSSL------EIPNAQGLTPFMLLEENIGA 726 (923)
Q Consensus 685 h~A~~~~~~~~v----~~Ll~~gad~------~~~d~~g~tpl~~a~~~~~~ 726 (923)
|+|+..|+.+++ ++|+++|++. +.+|..|+|||++|+++++.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~ 210 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence 999999999988 9999999988 58999999999999998653
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=9.7e-31 Score=264.83 Aligned_cols=180 Identities=24% Similarity=0.268 Sum_probs=108.6
Q ss_pred CCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899 543 SETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621 (923)
Q Consensus 543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~ 621 (923)
..+.||||.|+..|+.+.++.|++.+. +++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 345566666666666666666665554 4444433 25666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcccccCCCChHHHHHHHcCC-----HH
Q psy3899 622 FGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKN-----HV 694 (923)
Q Consensus 622 ~~~~~~v~~Ll~-~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~~~-----~~ 694 (923)
.|+.+++++|++ .+.+++..|..|.||||+|+..+ +.+++++|++.| ++++.+|. .|+||||+|+..++ .+
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT-CHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHH
Confidence 666666666663 35566666666666666666555 556666666665 56666665 56666666666655 56
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899 695 AITTLVSHTSSLEIPNAQGLTPFMLLEENIG 725 (923)
Q Consensus 695 ~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~ 725 (923)
++++|+++|+|++.+|..|.||+++|++++.
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 6666666666666666666666666665543
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=8.4e-32 Score=283.98 Aligned_cols=198 Identities=18% Similarity=0.078 Sum_probs=178.7
Q ss_pred CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC----CCCCCCcHhHHHHHc-
Q psy3899 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE----PDSETVTLLHWAAIN- 555 (923)
Q Consensus 481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~g~t~Lh~A~~~- 555 (923)
|.||||.|+..+..+.+ ...++.+++.|++++. +|..|.||||+|+..
T Consensus 2 G~t~L~~A~~~g~~~~v---------------------------~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~ 54 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEEL---------------------------TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL 54 (256)
T ss_dssp CHHHHHHHHHHTCGGGG---------------------------TTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTC
T ss_pred CccHHHHHHHcCCHHHH---------------------------HHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHcc
Confidence 57999999998876543 2466778889999998 899999999999999
Q ss_pred --CcHHHHHHHHhCCCcccccC----------CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC------------
Q psy3899 556 --NRIEIMKYFISQGAIVDAIG----------GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE------------ 611 (923)
Q Consensus 556 --g~~~~v~~Ll~~g~~~~~~~----------~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~------------ 611 (923)
|+.+++++|++.|++++... +..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus 55 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 134 (256)
T 2etb_A 55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 134 (256)
T ss_dssp BTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCC
T ss_pred ccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccc
Confidence 99999999999998876432 245999999999999999999999999999999887
Q ss_pred -CChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhh-CCcc-------hHHHHHhcCCCC-------
Q psy3899 612 -GSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKV-FSLD-------PTRLLITFGAST------- 672 (923)
Q Consensus 612 -g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~-~~~~-------~~~~Ll~~ga~~------- 672 (923)
|.||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..+ ++.+ ++++|+++|+++
T Consensus 135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~ 214 (256)
T 2etb_A 135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214 (256)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccc
Confidence 9999999999999999999999 99999999999999999999832 2666 999999999999
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899 673 TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 706 (923)
Q Consensus 673 ~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~ 706 (923)
+.+|. .|+||||+|+..|+.+++++|+++|++.
T Consensus 215 ~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 215 EISNH-QGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp GCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 88898 9999999999999999999999998754
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=4.8e-30 Score=259.70 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=174.0
Q ss_pred hhcccCCCCChhhHHHHHHhcC-CCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHH
Q psy3899 515 RYEVYTEPTSLSDKYQFVEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593 (923)
Q Consensus 515 ~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~ 593 (923)
.+..++..++.+.++.++..+. +++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHH
Confidence 4555566777999999998776 99999999999999999999999999999999999987655 999999999999999
Q ss_pred HHHHHH-HCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhhCC----cchHHHHHh
Q psy3899 594 SVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFS----LDPTRLLIT 667 (923)
Q Consensus 594 ~v~~Ll-~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~a~~~~~~----~~~~~~Ll~ 667 (923)
++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.. .+++++|++
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence 999999 678899999999999999999999999999999998 99999999999999999988731 899999999
Q ss_pred cCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899 668 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 703 (923)
Q Consensus 668 ~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g 703 (923)
+|++++.+|. .|+||||+|+..|+.+++++|+++|
T Consensus 167 ~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 167 NGADQSIKDN-SGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999998 9999999999999999999999987
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.3e-31 Score=282.37 Aligned_cols=213 Identities=16% Similarity=0.095 Sum_probs=173.4
Q ss_pred CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCC----CCCCCCCcHhHHHH
Q psy3899 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVN----EPDSETVTLLHWAA 553 (923)
Q Consensus 478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~g~t~Lh~A~ 553 (923)
+..|.||||.|+..+..+.++ ..++.+.+.+.+++ ..|..|.||||+|+
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 62 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELE---------------------------SLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTT---------------------------THHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH
T ss_pred CcccchHHHHHHHcCCHHHHH---------------------------HHHHHHhhcccccCCcccccCcCCCCHHHHHH
Confidence 566889999999998865443 23334445777776 45889999999999
Q ss_pred Hc---CcHHHHHHHHhCCCcc-------ccc---CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------
Q psy3899 554 IN---NRIEIMKYFISQGAIV-------DAI---GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS---------- 610 (923)
Q Consensus 554 ~~---g~~~~v~~Ll~~g~~~-------~~~---~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~---------- 610 (923)
.. |+.+++++|+++|++. +.. .+..|.||||+|+..|+.++|++|+++|++++.++.
T Consensus 63 ~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~ 142 (273)
T 2pnn_A 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR 142 (273)
T ss_dssp HSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred HHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence 87 9999999999998763 221 234599999999999999999999999999999987
Q ss_pred ----CCChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhhCC--------cchHHHHHhcCCCCcc-
Q psy3899 611 ----EGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKVFS--------LDPTRLLITFGASTTI- 674 (923)
Q Consensus 611 ----~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~~~--------~~~~~~Ll~~ga~~~~- 674 (923)
.|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+.. .+++++|+++|++++.
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~ 222 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence 79999999999999999999999 9999999999999999999988732 6899999999999974
Q ss_pred ------cccCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHH
Q psy3899 675 ------QDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFM 718 (923)
Q Consensus 675 ------~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~ 718 (923)
+|. .|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus 223 ~~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 223 LKLEEITNR-KGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp CCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred cccccccCC-CCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 777 99999999999999999999999999 88888888777643
No 50
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.1e-31 Score=277.16 Aligned_cols=185 Identities=25% Similarity=0.329 Sum_probs=166.9
Q ss_pred CCCCCCCCcHhHHHHHcCcHHHHHHHHhCCC----cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy3899 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGA----IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST 614 (923)
Q Consensus 539 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t 614 (923)
+.+|.+|.||||+|+..|+.+++++|++.+. +++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 3568899999999999999999999998765 5676554 4999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHH
Q psy3899 615 CIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 688 (923)
Q Consensus 615 ~Lh~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~ 688 (923)
|||+|+..|+.+++++|++.|.+ ++..|..|.||||+|+..+ +.+++++|+++|++++.++...|+||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999876 5778899999999999998 8999999999999999998658999999999
Q ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899 689 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG 725 (923)
Q Consensus 689 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~ 725 (923)
..|+.+++++|+++|++++.+|..|.||+++|+.++.
T Consensus 160 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence 9999999999999999999999999999999998754
No 51
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=4.2e-30 Score=258.08 Aligned_cols=162 Identities=23% Similarity=0.213 Sum_probs=156.6
Q ss_pred ccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899 10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89 (923)
Q Consensus 10 ~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL 89 (923)
.+|.+|.. |.||||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 27 ~~n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 27 LRNYRDSY-NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HHTCCCTT-CCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHhCcCCC-CCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 35677766 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCC
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL 169 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~ 169 (923)
|+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus 106 ~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-- 181 (192)
T 2rfm_A 106 MWSIIFG-YSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE-- 181 (192)
T ss_dssp HHHHHHT-CHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH--
T ss_pred HHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH--
Confidence 9999999 59999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHH
Q psy3899 170 GKATVDKITE 179 (923)
Q Consensus 170 ~~~~v~~L~~ 179 (923)
++++|++
T Consensus 182 ---~v~~Ll~ 188 (192)
T 2rfm_A 182 ---VIKIFTE 188 (192)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHh
Confidence 9999987
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2e-30 Score=273.38 Aligned_cols=181 Identities=24% Similarity=0.230 Sum_probs=166.1
Q ss_pred CCCcHhHHHHHcCcHH----HHHHHHhCCCcccc---cCCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCC-----
Q psy3899 544 ETVTLLHWAAINNRIE----IMKYFISQGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLM----- 608 (923)
Q Consensus 544 ~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~----- 608 (923)
.|.||||+|+..|+.+ ++++|++.|++++. ..+..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4789999999999997 66777789999997 2345599999999999 9999999999999887743
Q ss_pred ------CCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-------------CCcHHHHHHHhhCCcchHHHHHh--
Q psy3899 609 ------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLIT-- 667 (923)
Q Consensus 609 ------d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~t~Lh~a~~~~~~~~~~~~Ll~-- 667 (923)
|..|.||||+|+..|+.+++++|+++|++++..|.. |.||||+|+..| +.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-QWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT-CHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC-CHHHHHHHHhcc
Confidence 478999999999999999999999999999999987 999999999988 8999999999
Q ss_pred -cCCCCcccccCCCChHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CCCCCCCCCHHHHHHhccCC
Q psy3899 668 -FGASTTIQDKIHGNVALHWAIY--AKNHV-------AITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGA 726 (923)
Q Consensus 668 -~ga~~~~~d~~~g~TpLh~A~~--~~~~~-------~v~~Ll~~gad~-------~~~d~~g~tpl~~a~~~~~~ 726 (923)
.|++++.+|. .|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|++.+..
T Consensus 160 ~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 234 (256)
T 2etb_A 160 HQPASLEATDS-LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI 234 (256)
T ss_dssp SCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred ccCCCcCccCC-CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH
Confidence 9999999998 99999999999 88888 999999999999 99999999999999998653
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.3e-29 Score=246.44 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=151.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
|.||||.||..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~ 81 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-Y 81 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-C
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-C
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT 178 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~ 178 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+ ++++|+
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L~ 155 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS-----VQQVIE 155 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH-----HHHHHH
Confidence 9999999999999999998 9999999999999999999999999999999999999999999999999 999998
Q ss_pred H
Q psy3899 179 E 179 (923)
Q Consensus 179 ~ 179 (923)
+
T Consensus 156 ~ 156 (167)
T 3v31_A 156 S 156 (167)
T ss_dssp H
T ss_pred H
Confidence 8
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.6e-29 Score=248.93 Aligned_cols=170 Identities=23% Similarity=0.349 Sum_probs=154.4
Q ss_pred CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q psy3899 545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624 (923)
Q Consensus 545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~ 624 (923)
+.||||.|+..|+.++++.|++.+.+.....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 56899999999999999999999988444445569999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899 625 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 704 (923)
Q Consensus 625 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga 704 (923)
.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 99999999999999999998 99999999999999999999999999
Q ss_pred CCCCCCCCCCCH
Q psy3899 705 SLEIPNAQGLTP 716 (923)
Q Consensus 705 d~~~~d~~g~tp 716 (923)
++..++..|.||
T Consensus 160 ~~~~~~~~~~~p 171 (172)
T 3v30_A 160 KLFQSNLVPADP 171 (172)
T ss_dssp HHSCC-------
T ss_pred HHhcccCCCCCC
Confidence 999999999998
No 55
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=4.2e-30 Score=273.75 Aligned_cols=189 Identities=20% Similarity=0.219 Sum_probs=164.2
Q ss_pred cCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHh----CCCcccc---cCCCCCchHHHHHHHc---CCHHHHHHHHHCCCC
Q psy3899 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGAD 604 (923)
Q Consensus 535 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~ 604 (923)
++..+..|..|.||||+|+..|+.++++.|++ .+++++. ..+..|+||||+|+.. |+.++|++|+++|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 45667789999999999999999999998886 5665542 3355699999999987 999999999999875
Q ss_pred C-------C----CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCC--------------CCCcHHHHHHHhhCCc
Q psy3899 605 P-------T----LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--------------NGMTALMWSAYKVFSL 659 (923)
Q Consensus 605 ~-------~----~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~--------------~g~t~Lh~a~~~~~~~ 659 (923)
+ + ..|..|.||||+|++.|+.+++++|+++|++++..|. .|.||||+|+..| +.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT-CH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC-CH
Confidence 3 2 2567899999999999999999999999999999997 7999999999998 99
Q ss_pred chHHHHHh---cCCCCcccccCCCChHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCCCHHHHH
Q psy3899 660 DPTRLLIT---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSLE-------IPNAQGLTPFMLL 720 (923)
Q Consensus 660 ~~~~~Ll~---~ga~~~~~d~~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~~-------~~d~~g~tpl~~a 720 (923)
+++++|++ .|++++.+|. .|+||||+|+..|+ .+++++|+++|++++ .+|..|.|||++|
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 99999999 9999999998 99999999999998 899999999999987 5999999999999
Q ss_pred HhccC
Q psy3899 721 EENIG 725 (923)
Q Consensus 721 ~~~~~ 725 (923)
++.++
T Consensus 241 ~~~g~ 245 (273)
T 2pnn_A 241 ASSGK 245 (273)
T ss_dssp HHTTC
T ss_pred HHhCh
Confidence 99865
No 56
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=6.7e-30 Score=270.10 Aligned_cols=200 Identities=18% Similarity=0.054 Sum_probs=174.0
Q ss_pred CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCC----CCCCcHhHHHH--
Q psy3899 480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPD----SETVTLLHWAA-- 553 (923)
Q Consensus 480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~g~t~Lh~A~-- 553 (923)
.++|+|+.|+..+..+.++ ..++.+++.|.+++..+ ..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~---------------------------~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 56 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLE---------------------------GLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN 56 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGT---------------------------THHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTS
T ss_pred chHHHHHHHHHhCCHHHHH---------------------------HHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHH
Confidence 4678999999888755332 34556667999999766 77999999999
Q ss_pred -HcCcHHHHHHHHhCCCcccc----------cCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Q psy3899 554 -INNRIEIMKYFISQGAIVDA----------IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD------------- 609 (923)
Q Consensus 554 -~~g~~~~v~~Ll~~g~~~~~----------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d------------- 609 (923)
..|+.+++++|++.|++... ..+..|+||||+|+..|+.++|++|+++|++++.++
T Consensus 57 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 136 (260)
T 3jxi_A 57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGY 136 (260)
T ss_dssp CBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCS
T ss_pred hhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccc
Confidence 67999999999998865321 112259999999999999999999999999999998
Q ss_pred -CCCChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhhCC--------cchHHHHHhcCCCC-----
Q psy3899 610 -SEGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKVFS--------LDPTRLLITFGAST----- 672 (923)
Q Consensus 610 -~~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~~~--------~~~~~~Ll~~ga~~----- 672 (923)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+.. .+++++|+++|+++
T Consensus 137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~ 216 (260)
T 3jxi_A 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216 (260)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence 689999999999999999999999 9999999999999999999987732 58999999999999
Q ss_pred --cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899 673 --TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 707 (923)
Q Consensus 673 --~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~ 707 (923)
+.+|. .|+||||+|+..|+.+++++|+++|++..
T Consensus 217 ~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 217 LEALLNN-DGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp GGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 67887 99999999999999999999999987543
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.8e-29 Score=245.39 Aligned_cols=155 Identities=28% Similarity=0.343 Sum_probs=151.1
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
.+.|+|+.||+.|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 91 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG- 91 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+ ++++|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L 165 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED-----LAEIL 165 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH-----HHHHH
Confidence 59999999999999999998 9999999999999999999999999999999999999999999999999 99999
Q ss_pred HH
Q psy3899 178 TE 179 (923)
Q Consensus 178 ~~ 179 (923)
++
T Consensus 166 ~~ 167 (169)
T 2y1l_E 166 QK 167 (169)
T ss_dssp HT
T ss_pred HH
Confidence 86
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=5.6e-29 Score=249.87 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=156.8
Q ss_pred CCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy3899 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH 617 (923)
Q Consensus 538 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh 617 (923)
+|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccccc-CccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 5788999999999999999999999999999999876555 999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHH
Q psy3899 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 697 (923)
Q Consensus 618 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~ 697 (923)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL-TGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999999999999988 89999999999999999998 9999999999999999999
Q ss_pred HHHHCC
Q psy3899 698 TLVSHT 703 (923)
Q Consensus 698 ~Ll~~g 703 (923)
+|+++|
T Consensus 185 ~Ll~~~ 190 (192)
T 2rfm_A 185 IFTEVR 190 (192)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999875
No 59
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=9.5e-29 Score=238.20 Aligned_cols=151 Identities=24% Similarity=0.302 Sum_probs=146.0
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
+.||||.|+..|+.++|+.|++.|++++ .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-H 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-C
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-h
Confidence 4699999999999999999999999887 5899999999999999999999999999999999999999999999999 5
Q ss_pred CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+ ++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-----LAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHh
Confidence 9999999999999999998 9999999999999999999999999999999999999999999999999 88876
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=267.01 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=160.5
Q ss_pred cccccCcc--cccccCCCCccHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----HhCcHHHHHHHHHC
Q psy3899 3 YFISQGAI--VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA-----QFGHTRIVAYLVAK 74 (923)
Q Consensus 3 ~Li~~g~~--~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga-~~~~~d~~g~TpLh~Aa-----~~g~~~iv~~Ll~~ 74 (923)
.+++.+.+ +|.+|.. |.||||+||..|+.++|++|++.|+ +++.+|..|+||||+|+ ..|+.+++++|++.
T Consensus 94 ~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~ 172 (276)
T 4hbd_A 94 AMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172 (276)
T ss_dssp HHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc
Confidence 45555555 8888877 9999999999999999999999998 99999999999999999 77999999999999
Q ss_pred CCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCCCCCCC
Q psy3899 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQG 153 (923)
Q Consensus 75 ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g 153 (923)
|++.+..|..|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+..|+.++|++|++ .|++++.+|..|
T Consensus 173 g~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g 250 (276)
T 4hbd_A 173 GNINAKASQAGQTALMLAVSHG-RVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250 (276)
T ss_dssp SCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred CCCccccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence 9999999999999999999999 59999999999999999999 99999999999999999999999 899999999999
Q ss_pred CChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 154 LTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 154 ~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
.||||+|+..|+.+ ++++|++
T Consensus 251 ~TpL~~A~~~g~~~-----iv~~Ll~ 271 (276)
T 4hbd_A 251 STALMVALDAGQSE-----IASMLYS 271 (276)
T ss_dssp CCHHHHHHHHTCHH-----HHHHHHH
T ss_pred CCHHHHHHHcCCHH-----HHHHHHh
Confidence 99999999999999 9999987
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.6e-28 Score=239.18 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=148.9
Q ss_pred CCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899 544 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623 (923)
Q Consensus 544 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~ 623 (923)
...||||.|+..|+.+++++|+++|++++..+.. |.||||+|+. |+.+++++|+++|++++.+|..|.||||+|++.|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCcc-CccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 4679999999999999999999999999877555 9999999999 9999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCC-CcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS-TTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702 (923)
Q Consensus 624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~-~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ 702 (923)
+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++ ++.+|. .|.||||+|+..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999999999999999999988 89999999999998 588887 999999999999999999999999
Q ss_pred CCC
Q psy3899 703 TSS 705 (923)
Q Consensus 703 gad 705 (923)
|||
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 986
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=9.1e-29 Score=240.85 Aligned_cols=153 Identities=26% Similarity=0.329 Sum_probs=149.1
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
..||||.|+..|+.++|+.|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~ 82 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG-F 82 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-C
Confidence 6799999999999999999999999999999999999999999 9999999999999999999999999999999999 4
Q ss_pred CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC-CCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS-LEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+ ++++|
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L 156 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-----VVSLM 156 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH-----HHHHH
Confidence 9999999999999999999 999999999999999999999999997 5999999999999999999999 99999
Q ss_pred HH
Q psy3899 178 TE 179 (923)
Q Consensus 178 ~~ 179 (923)
++
T Consensus 157 l~ 158 (162)
T 1ihb_A 157 QA 158 (162)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.4e-28 Score=242.26 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=149.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~-~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
+.||||.||..|+.++|+.|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG- 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC-
Confidence 56999999999999999999999877 8899999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+ ++++|
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L 154 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK-----VQQVI 154 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHH-----HHHHH
Confidence 49999999999999999998 9999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHH
Q psy3899 178 TELK 181 (923)
Q Consensus 178 ~~~~ 181 (923)
++..
T Consensus 155 ~~~~ 158 (172)
T 3v30_A 155 ENHI 158 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9833
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.2e-28 Score=239.41 Aligned_cols=161 Identities=26% Similarity=0.378 Sum_probs=150.4
Q ss_pred CCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899 544 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623 (923)
Q Consensus 544 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~ 623 (923)
.|.||||.|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 5889999999999999999999999998876554 999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 703 (923)
Q Consensus 624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g 703 (923)
+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999888 89999999999999999998 9999999999999999999999988
Q ss_pred CCCC
Q psy3899 704 SSLE 707 (923)
Q Consensus 704 ad~~ 707 (923)
++..
T Consensus 159 ~~~~ 162 (167)
T 3v31_A 159 LKLL 162 (167)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7543
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=5.4e-28 Score=237.14 Aligned_cols=159 Identities=33% Similarity=0.401 Sum_probs=149.1
Q ss_pred CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621 (923)
Q Consensus 542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~ 621 (923)
...+.|+||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 456789999999999999999999999999876554 9999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899 622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 701 (923)
Q Consensus 622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~ 701 (923)
.|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999988 89999999999999999998 99999999999999999999998
Q ss_pred CC
Q psy3899 702 HT 703 (923)
Q Consensus 702 ~g 703 (923)
.|
T Consensus 168 ~G 169 (169)
T 2y1l_E 168 LN 169 (169)
T ss_dssp C-
T ss_pred cC
Confidence 86
No 66
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=262.67 Aligned_cols=176 Identities=24% Similarity=0.311 Sum_probs=158.2
Q ss_pred hhhHHHHHHhcCC--CCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHH-----HcCCHHHHH
Q psy3899 525 LSDKYQFVEAGQD--VNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWAT-----RQGHLDSVV 596 (923)
Q Consensus 525 ~~~~~~ll~~~~~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~ 596 (923)
.+.++.+++.+.+ +|.+|..|.||||+|+..|+.+++++|++.|+ +++..+ ..|.||||+|+ ..++.++++
T Consensus 89 ~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~~~~~~~~~v~ 167 (276)
T 4hbd_A 89 LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATLKTQDDIETVL 167 (276)
T ss_dssp HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHhhhhhhHHHHH
Confidence 4555566655544 78899999999999999999999999999998 777655 44999999999 678899999
Q ss_pred HHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHh-cCCCCccc
Q psy3899 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQ 675 (923)
Q Consensus 597 ~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~-~ga~~~~~ 675 (923)
+|++.|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..| +.+++++|++ .|++++.+
T Consensus 168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~~ 246 (276)
T 4hbd_A 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG-HKEIAGLLLAVPSCDISLT 246 (276)
T ss_dssp HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHTSTTCCTTCC
T ss_pred HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhcCCCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999988 8999999999 89999999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899 676 DKIHGNVALHWAIYAKNHVAITTLVSHT 703 (923)
Q Consensus 676 d~~~g~TpLh~A~~~~~~~~v~~Ll~~g 703 (923)
|. .|+||||+|+..|+.+++++|++++
T Consensus 247 d~-~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 247 DR-DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 98 9999999999999999999999875
No 67
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=6.2e-29 Score=262.62 Aligned_cols=183 Identities=20% Similarity=0.172 Sum_probs=163.6
Q ss_pred CCCCCcHhHHHHHcCcHHHHHH----HHhCCCcccccC---CCCCchHHHHHH---HcCCHHHHHHHHHCCCC-------
Q psy3899 542 DSETVTLLHWAAINNRIEIMKY----FISQGAIVDAIG---GDLQATPLHWAT---RQGHLDSVVLLIQHGAD------- 604 (923)
Q Consensus 542 ~~~g~t~Lh~A~~~g~~~~v~~----Ll~~g~~~~~~~---~~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~------- 604 (923)
+..|.|+||.|++.|+.+.++. |++.|++++..+ +..|.||||+|+ +.|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4578999999999999995554 445899988654 255999999999 77999999999998754
Q ss_pred ----CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC--------------CCCCcHHHHHHHhhCCcchHHHHH
Q psy3899 605 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--------------RNGMTALMWSAYKVFSLDPTRLLI 666 (923)
Q Consensus 605 ----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d--------------~~g~t~Lh~a~~~~~~~~~~~~Ll 666 (923)
.+..|..|.||||+|+..|+.+++++|+++|++++..| ..|.||||+|+..| +.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-QPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-CHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-CHHHHHHHH
Confidence 34456689999999999999999999999999999999 68999999999998 899999999
Q ss_pred h---cCCCCcccccCCCChHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHhccCC
Q psy3899 667 T---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGA 726 (923)
Q Consensus 667 ~---~ga~~~~~d~~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~-------~~~d~~g~tpl~~a~~~~~~ 726 (923)
+ .|++++.+|. .|+||||+|+..++ .+++++|+++|+++ +.+|.+|.||||+|++.++.
T Consensus 161 ~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 161 ENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp HCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred hccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 9 9999999998 99999999999888 79999999999998 68999999999999998653
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.2e-28 Score=233.83 Aligned_cols=152 Identities=26% Similarity=0.379 Sum_probs=147.1
Q ss_pred CccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
|.||||.||..|+.++|+.|++. +.+++.+|..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG- 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-
Confidence 67999999999999999999999 55999999999999999 9999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++ ++++.+|..|.||||+|+..|+.+ ++++|
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~-----~v~~L 152 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQD-----LVDIL 152 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHH-----HHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHH-----HHHHH
Confidence 59999999999999999999 999999999999999999999999 999999999999999999999999 99998
Q ss_pred HH
Q psy3899 178 TE 179 (923)
Q Consensus 178 ~~ 179 (923)
++
T Consensus 153 l~ 154 (156)
T 1bd8_A 153 QG 154 (156)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=3.4e-28 Score=237.60 Aligned_cols=155 Identities=22% Similarity=0.274 Sum_probs=147.8
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHh
Q psy3899 17 DLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95 (923)
Q Consensus 17 ~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~ 95 (923)
..|.||||.|+..|+.++|+.|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 3489999999999999999999985 678888999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhh
Q psy3899 96 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVD 175 (923)
Q Consensus 96 g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~ 175 (923)
| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.+ |+.+ +++
T Consensus 86 ~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~-----i~~ 157 (165)
T 3twr_A 86 G-HYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD-----IQD 157 (165)
T ss_dssp T-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHH-----HHH
T ss_pred C-cHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChH-----HHH
Confidence 9 49999999999999999999 99999999999999999999999999999999999999999877 7778 999
Q ss_pred HHHH
Q psy3899 176 KITE 179 (923)
Q Consensus 176 ~L~~ 179 (923)
+|++
T Consensus 158 ~L~~ 161 (165)
T 3twr_A 158 LLRG 161 (165)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9986
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.1e-27 Score=237.53 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=155.2
Q ss_pred CCCCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899 543 SETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621 (923)
Q Consensus 543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~ 621 (923)
.++.++||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 4678999999999999999999998 55566554 459999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899 622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 701 (923)
Q Consensus 622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~ 701 (923)
.|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..++.+++++|++
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-QDQVAEDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 89999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q psy3899 702 HTSSLEIPNAQG 713 (923)
Q Consensus 702 ~gad~~~~d~~g 713 (923)
+|++++..+.++
T Consensus 160 ~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 MGQNLNRIPYKD 171 (179)
T ss_dssp TTCCCSCBCCCC
T ss_pred hhcCcccCCccc
Confidence 999999877654
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4e-30 Score=265.26 Aligned_cols=200 Identities=18% Similarity=0.091 Sum_probs=171.3
Q ss_pred HHHHHHhcCCCCCCC---CCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899 528 KYQFVEAGQDVNEPD---SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604 (923)
Q Consensus 528 ~~~ll~~~~~~~~~~---~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~ 604 (923)
++.++++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE-GITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 356788888877654 45668899999999999999999999999986555 99999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHH--HHhhCCcchHHHHHhcCCCCcccccCCCC
Q psy3899 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWS--AYKVFSLDPTRLLITFGASTTIQDKIHGN 681 (923)
Q Consensus 605 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~a--~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~ 681 (923)
++.+|..|.||||+|+..|+.+++++|+++|++++..| ..|+||||+| +..+ +.+++++|++.|++++.+|. .|.
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~-~~~~v~~Ll~~ga~~~~~~~-~~~ 157 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG-YADCATYLADVEQSMGLMNS-GAV 157 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTT-HHHHHHHHHHHHHHTTTSGG-GEE
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcC-hHHHHHHHHHcCCCcccccC-Cch
Confidence 99999999999999999999999999999999999997 5999999999 7777 89999999999999999998 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHhccCCCccchhh
Q psy3899 682 VALHWAIYAKNHVAITTLVSHTSS--LEIPNAQGLTPFMLLEENIGAPWLGKAT 733 (923)
Q Consensus 682 TpLh~A~~~~~~~~v~~Ll~~gad--~~~~d~~g~tpl~~a~~~~~~~~~~~~~ 733 (923)
||||.++..+. +++|++.|++ ++.+|.+|+|||++|+.++...++.+..
T Consensus 158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 99997665543 3678999998 7889999999999999988776665543
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=5.5e-30 Score=282.30 Aligned_cols=146 Identities=16% Similarity=0.071 Sum_probs=123.5
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHHhCcHHHHHHHHHCCCc---ccccCCCCCcHHHHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWS 92 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~---~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~---vn~~d~~g~TpL~~A 92 (923)
++||||+||+.|+.++|++|+++|++. +..|.+|.||||+||..||.++|++|+++|++ .+..+.+ .||||+|
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A 170 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA 170 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence 569999999999999999999998732 23456788999999999999999999999976 3333333 8999999
Q ss_pred HHhcCCCchhHHHHhcCCCccc--ccccCCCcHHHHHH-HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCC
Q psy3899 93 AYKVFSLDPTRLLITFGASTTI--QDKIHGNVALHWAI-YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL 169 (923)
Q Consensus 93 a~~g~~~~vv~lLl~~ga~~~~--~d~~~g~T~L~~A~-~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~ 169 (923)
|..|+ .++|++|+++|++++. .|. .|.||||+|+ .+|+.++|++|+++|+ .|.||||.|+.+|+.+
T Consensus 171 a~~G~-~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~e-- 239 (376)
T 2aja_A 171 AENGH-LHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKY-- 239 (376)
T ss_dssp HHTTC-HHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTT--
T ss_pred HHCCC-HHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHH--
Confidence 99995 9999999999999887 887 8999999999 9999999999999774 3889999999999999
Q ss_pred chhhhhHHHH
Q psy3899 170 GKATVDKITE 179 (923)
Q Consensus 170 ~~~~v~~L~~ 179 (923)
++++|++
T Consensus 240 ---vv~lL~~ 246 (376)
T 2aja_A 240 ---VNPFIAR 246 (376)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHh
Confidence 9999987
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.6e-29 Score=256.65 Aligned_cols=170 Identities=21% Similarity=0.151 Sum_probs=144.2
Q ss_pred CccccccCcccccccC--CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcc
Q psy3899 1 MKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78 (923)
Q Consensus 1 v~~Li~~g~~~n~~~~--~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~v 78 (923)
|+.|+++|++++..+. ..|.||||+||..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 6789999999876543 34678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHH--HHhCcHHHHHHHHhcCCCCC---------
Q psy3899 79 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTLVSHTSSLE--------- 147 (923)
Q Consensus 79 n~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A--~~~g~~~iv~~Ll~~ga~~~--------- 147 (923)
|.+|..|.||||+|+..| +.+++++|++.|++++..++..|.||||+| +..|+.+++++|+++|++++
T Consensus 81 n~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 159 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159 (229)
T ss_dssp TCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred CCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence 999999999999999999 599999999999999998733899999999 99999999999998765443
Q ss_pred -----------------------CCCCCCCChHHHHHhhcCCCCCchhhhhH
Q psy3899 148 -----------------------IPNAQGLTPFMLLEENIGAPWLGKATVDK 176 (923)
Q Consensus 148 -----------------------~~~~~g~t~L~~A~~~g~~~~~~~~~v~~ 176 (923)
.+|..|.||||+|+..|+.+ +|+.
T Consensus 160 l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~-----~v~~ 206 (229)
T 2vge_A 160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG-----YVPR 206 (229)
T ss_dssp SSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEE-----EEEG
T ss_pred HHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcc-----eeeh
Confidence 34667888888888888888 6654
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=9.6e-28 Score=237.84 Aligned_cols=154 Identities=22% Similarity=0.303 Sum_probs=148.5
Q ss_pred CccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
+.|+||.||..|+.++|+.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 78999999999999999999999 78899999999999999999999999999999999999999999999999999995
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+ ++++|
T Consensus 85 -~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~~~~L 157 (179)
T 3f6q_A 85 -RDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL-----LRERA 157 (179)
T ss_dssp -HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHH-----HHHHH
T ss_pred -HHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHH-----HHHHH
Confidence 9999999999999999998 9999999999999999999999999999999999999999999999988 99999
Q ss_pred HH
Q psy3899 178 TE 179 (923)
Q Consensus 178 ~~ 179 (923)
++
T Consensus 158 ~~ 159 (179)
T 3f6q_A 158 EK 159 (179)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 75
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.9e-31 Score=291.47 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=91.8
Q ss_pred CccHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCc---ccccCCCCCcHHHHHHH
Q psy3899 19 QATPLHWATR-QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAY 94 (923)
Q Consensus 19 g~T~Lh~Aa~-~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~---vn~~d~~g~TpL~~Aa~ 94 (923)
+.+++++|+. .++.++++.++++|++. +||||+||+.|+.++|++|+++|+. .+..|..|.||||+||.
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~ 137 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence 4567777766 46677777777766443 4777777777777777777777762 22334456777777777
Q ss_pred hcCCCchhHHHHhcCCCc---ccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC--CCCCCCChHHHHH-hhcCCC
Q psy3899 95 KVFSLDPTRLLITFGAST---TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI--PNAQGLTPFMLLE-ENIGAP 167 (923)
Q Consensus 95 ~g~~~~vv~lLl~~ga~~---~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~--~~~~g~t~L~~A~-~~g~~~ 167 (923)
.|+ .++|++|+++|+++ +..+. + .||||+|+.+|+.++|++|+++|++++. .|..|.||||+|+ ..|+.+
T Consensus 138 ~G~-~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 138 NGH-LHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp TTC-HHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred cCC-HHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence 774 77777777777653 33333 3 7777777777777777777777776655 5666666666666 666665
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.7e-27 Score=227.94 Aligned_cols=151 Identities=28% Similarity=0.360 Sum_probs=136.0
Q ss_pred CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q psy3899 545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624 (923)
Q Consensus 545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~ 624 (923)
..|+||.|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 45889999999999999999999987763 4558999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899 625 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699 (923)
Q Consensus 625 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L 699 (923)
.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999887 88999999999999999888 899999999999999999876
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.5e-27 Score=233.02 Aligned_cols=160 Identities=29% Similarity=0.342 Sum_probs=145.1
Q ss_pred CCCCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy3899 541 PDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619 (923)
Q Consensus 541 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A 619 (923)
.|.+|.||||.|+..|+.++++.|++.+. +++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 46778999999999999999999998544 44443 44489999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899 620 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699 (923)
Q Consensus 620 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L 699 (923)
+..|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+. |+.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEICKLLLQHGADPTKKNR-DGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCChhHhHhc-CChHHHHHH
Confidence 9999999999999999999999999999999999988 89999999999999999998 99999999876 999999999
Q ss_pred HHCCC
Q psy3899 700 VSHTS 704 (923)
Q Consensus 700 l~~ga 704 (923)
+++|+
T Consensus 160 ~~~gA 164 (165)
T 3twr_A 160 RGDAA 164 (165)
T ss_dssp HTC--
T ss_pred hhccc
Confidence 99986
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.4e-28 Score=254.34 Aligned_cols=181 Identities=23% Similarity=0.186 Sum_probs=136.7
Q ss_pred CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621 (923)
Q Consensus 542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~ 621 (923)
+..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 346999999999999999999999999999864 458999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHH--HHcCCHHHHHHH
Q psy3899 622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTL 699 (923)
Q Consensus 622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A--~~~~~~~~v~~L 699 (923)
.|+.+++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|++++.++...++||||+| +..|+.+++++|
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 99999999999999999999999999999999888 899999999999999999983444999999 888999999999
Q ss_pred HHCCCCCCCC---------CCCCCCHHHHHHhccC
Q psy3899 700 VSHTSSLEIP---------NAQGLTPFMLLEENIG 725 (923)
Q Consensus 700 l~~gad~~~~---------d~~g~tpl~~a~~~~~ 725 (923)
+++|++++.. |..|++|.+++.+.+.
T Consensus 159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999998876 6678899988877654
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.4e-27 Score=224.85 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=129.8
Q ss_pred CcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC-CC
Q psy3899 8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GM 86 (923)
Q Consensus 8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~-g~ 86 (923)
|+++|..+.. |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.
T Consensus 2 ~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 2 SPGIHMLGGS-SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CCCccCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 6899999877 9999999999999999999999999999999999999999999 9999999999999999999999 99
Q ss_pred cHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899 87 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145 (923)
Q Consensus 87 TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~ 145 (923)
||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus 80 t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHT-CHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999 49999999999999999999 999999999999999999999999985
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.7e-26 Score=223.17 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=142.1
Q ss_pred CCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899 545 TVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623 (923)
Q Consensus 545 g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~ 623 (923)
+.||||+|+..|+.++++.|++. +.+++..+. .|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 56899999999999999999998 336766554 49999999 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702 (923)
Q Consensus 624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ 702 (923)
+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++. ++++.+|. .|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC-hHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999999999988 89999999999 99999998 999999999999999999999875
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=2.4e-27 Score=229.08 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=120.6
Q ss_pred ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc-HHH
Q psy3899 12 DAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALM 90 (923)
Q Consensus 12 n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T-pL~ 90 (923)
+..+.. |.||||+||..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||
T Consensus 6 ~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEP-SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CC-STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred cCCCcc-chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 334444 999999999999999999999999999999999999999996 99999999999999999999999999 999
Q ss_pred HHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899 91 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 161 (923)
Q Consensus 91 ~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~ 161 (923)
+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||.+-+.
T Consensus 84 ~A~~~~~-~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 84 DAAREGF-LDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHTC-HHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHCCC-HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 9999995 9999999999999999999 9999999999999999999999999999999999999987543
No 82
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=7.3e-27 Score=243.09 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=119.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
.|.||||.|++.|+.+.|+.|+++|++++. +..|.||||.|+..|+.++|++|+++|+++|.+|..|.||||+||..|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 389999999999999999999999999986 4789999999999999999999999999999999999999999999995
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCC-ChHHHH--HhhcCCCCCchhhh
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL-TPFMLL--EENIGAPWLGKATV 174 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-t~L~~A--~~~g~~~~~~~~~v 174 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.++..|. ||||+| +..|+.+ ++
T Consensus 83 -~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~-----~~ 155 (239)
T 1ycs_B 83 -TEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----CS 155 (239)
T ss_dssp -HHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC-----HH
T ss_pred -HHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH-----HH
Confidence 9999999999999999999 999999999999999999999999999999998887 999999 7889999 99
Q ss_pred hHHHHHHhh
Q psy3899 175 DKITELKDH 183 (923)
Q Consensus 175 ~~L~~~~~~ 183 (923)
++|++....
T Consensus 156 ~~Ll~~~a~ 164 (239)
T 1ycs_B 156 QFLYGVQEK 164 (239)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 999984433
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=8e-27 Score=231.56 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=140.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCcH----HHHHHHHHCCCcccccCCCCCcHHHHHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHT----RIVAYLVAKGINVNLQDRNGMTALMWSA 93 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa 93 (923)
+.++|+.||+.|+.+.|+.+++.+. +.++ ..|+||||+|+.+|+. +++++|+++|+++|.+|.+|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 5689999999999999999998764 4555 7899999999999975 5999999999999999999999999999
Q ss_pred HhcCC-----CchhHHHHhcCCCcccccccCCC-cHHHHHHHh-----CcHHHHHHHHh-cCCCCCCCCCCCCChHHHHH
Q psy3899 94 YKVFS-----LDPTRLLITFGASTTIQDKIHGN-VALHWAIYA-----KNHVAITTLVS-HTSSLEIPNAQGLTPFMLLE 161 (923)
Q Consensus 94 ~~g~~-----~~vv~lLl~~ga~~~~~d~~~g~-T~L~~A~~~-----g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~ 161 (923)
..|+. .+++++|+++|+++|.+|. .|. ||||+|+.. ++.+++++|++ +|++++.+|..|.||||+|+
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 99852 4679999999999999999 999 999999994 45679999999 99999999999999999999
Q ss_pred hhcCCCCCchhhhhHHHH
Q psy3899 162 ENIGAPWLGKATVDKITE 179 (923)
Q Consensus 162 ~~g~~~~~~~~~v~~L~~ 179 (923)
+.|+.+ ++++|.+
T Consensus 163 ~~~~~~-----~v~~L~~ 175 (186)
T 3t8k_A 163 RCQKPI-----ALKMMED 175 (186)
T ss_dssp TTTCHH-----HHHHHHH
T ss_pred HcCCHH-----HHHHHHH
Confidence 999999 9999987
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=2.3e-26 Score=228.24 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=142.6
Q ss_pred CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy3899 545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAA 620 (923)
Q Consensus 545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~ 620 (923)
++++|+.|++.|+.+.++.+++.+.+. .++..|+||||+|+..|+. +++++|+++|+|++.+|..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 568999999999999999999887543 3324489999999999975 5899999999999999999999999999
Q ss_pred HcCc------HHHHHHHHHcCCCCCccCCCCC-cHHHHHHHhhC----CcchHHHHHh-cCCCCcccccCCCChHHHHHH
Q psy3899 621 QFGH------TRIVAYLVAKGINVNLQDRNGM-TALMWSAYKVF----SLDPTRLLIT-FGASTTIQDKIHGNVALHWAI 688 (923)
Q Consensus 621 ~~~~------~~~v~~Ll~~g~~~~~~d~~g~-t~Lh~a~~~~~----~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~ 688 (923)
..++ .+++++|+++|+++|.+|..|+ ||||+|+..+. ..+++++|++ .|++++.+|. .|.||||+|+
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~-~G~TpL~~A~ 162 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVK 162 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC-CCCCHHHHHH
Confidence 9886 5789999999999999999999 99999998431 3468899999 9999999998 9999999999
Q ss_pred HcCCHHHHHHHHHCCCCCCCCC
Q psy3899 689 YAKNHVAITTLVSHTSSLEIPN 710 (923)
Q Consensus 689 ~~~~~~~v~~Ll~~gad~~~~d 710 (923)
..|+.++|++|+++..+.++++
T Consensus 163 ~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHHhccc
Confidence 9999999999998876666665
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3.1e-25 Score=208.73 Aligned_cols=124 Identities=31% Similarity=0.364 Sum_probs=119.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
.|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~- 91 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG- 91 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcC
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 143 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~g 143 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 59999999999999999998 9999999999999999999999876
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1e-25 Score=217.63 Aligned_cols=142 Identities=21% Similarity=0.212 Sum_probs=103.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHh
Q psy3899 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALMWSAYK 655 (923)
Q Consensus 577 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t-~Lh~a~~~ 655 (923)
..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+..
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence 34778888888888888888888888888888888888888874 77888888888888888888888888 88888877
Q ss_pred hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q psy3899 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 721 (923)
Q Consensus 656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~ 721 (923)
+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+.
T Consensus 89 ~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 89 G-FLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp T-CHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred C-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 7 78888888888888888887 8888888888888888888888888888888888888877543
No 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.9e-25 Score=208.95 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=91.7
Q ss_pred CcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-CCc
Q psy3899 569 AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMT 647 (923)
Q Consensus 569 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~t 647 (923)
++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus 3 ~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 3 PGIHMLGGS-SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCccCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 344444333 6666666666666666666666666666666667777777777 7777777777777777777776 677
Q ss_pred HHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705 (923)
Q Consensus 648 ~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad 705 (923)
|||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|
T Consensus 81 ~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHT-CHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 777777666 66777777777777777776 677777777777777777777777764
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=9.3e-25 Score=202.29 Aligned_cols=125 Identities=37% Similarity=0.538 Sum_probs=122.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-h
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~ 145 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999998 999999999999999999999999985
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=2.8e-25 Score=209.46 Aligned_cols=133 Identities=26% Similarity=0.315 Sum_probs=107.3
Q ss_pred CcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc
Q psy3899 8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 87 (923)
Q Consensus 8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T 87 (923)
|+|+ .+|.. |.||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 1 G~d~-~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 1 GIDP-FTNHR-GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78 (137)
T ss_dssp ---C-CCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CCCC-CcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence 6777 44544 888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCC
Q psy3899 88 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 144 (923)
Q Consensus 88 pL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga 144 (923)
|||+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..+..+++++|.+.+.
T Consensus 79 ~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 79 PLHDAAKNGH-VDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-TSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhccHHHHHhhcccccc
Confidence 8888888884 8888888888888888888 88888888888888888887776554
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=8.2e-25 Score=217.43 Aligned_cols=137 Identities=23% Similarity=0.278 Sum_probs=128.4
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHHHHHHHhc
Q psy3899 18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV 96 (923)
Q Consensus 18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL~~Aa~~g 96 (923)
.|.||||+||..|+.++|+.|++ |++++.+|.+|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence 38999999999999999999999 99999999999999999999999999999999999999998 88999999999999
Q ss_pred CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhH
Q psy3899 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK 176 (923)
Q Consensus 97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~ 176 (923)
+ .+++++|+++|++++.+|. .|.||||+|+..++. ..+.++|++|+..|..+ ++++
T Consensus 122 ~-~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~-----i~~~ 177 (183)
T 3deo_A 122 R-PEVVEALVELGADIEVEDE-RGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEK-----VINV 177 (183)
T ss_dssp C-HHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHH-----HHHH
T ss_pred c-HHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHH-----HHHH
Confidence 4 9999999999999999999 999999999986543 35689999999999999 9998
Q ss_pred HHH
Q psy3899 177 ITE 179 (923)
Q Consensus 177 L~~ 179 (923)
|.+
T Consensus 178 L~~ 180 (183)
T 3deo_A 178 LEG 180 (183)
T ss_dssp HHT
T ss_pred HHH
Confidence 875
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.3e-24 Score=203.11 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=120.2
Q ss_pred CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCC
Q psy3899 42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121 (923)
Q Consensus 42 ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~ 121 (923)
|+|+ .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG-HLKVVELLLQHKALVNTTGY-QND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCG-GGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccCcCC-CCC
Confidence 6788 78999999999999999999999999999999999999999999999999 59999999999999999998 999
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179 (923)
Q Consensus 122 T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~ 179 (923)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+ ++++|.+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~l~~l~~ 130 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS-----LLLLPEK 130 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHH-----HHSCC--
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHH-----HHhhccc
Confidence 9999999999999999999999999999999999999999988777 7776655
No 92
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.1e-23 Score=196.25 Aligned_cols=124 Identities=31% Similarity=0.364 Sum_probs=108.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhC
Q psy3899 578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657 (923)
Q Consensus 578 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~ 657 (923)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~- 91 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG- 91 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence 3778888888888888888888888888888888888888888888888888888888888888888889999888887
Q ss_pred CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 703 (923)
Q Consensus 658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g 703 (923)
+.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88888888888888888887 8899999999999999999988876
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=3.4e-23 Score=191.72 Aligned_cols=125 Identities=37% Similarity=0.538 Sum_probs=110.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCC
Q psy3899 579 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 658 (923)
Q Consensus 579 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~ 658 (923)
|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..+ +
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-h
Confidence 788888888888888888888888888888888888999988888888888888888888888888899999888887 7
Q ss_pred cchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705 (923)
Q Consensus 659 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad 705 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 8888999988998888887 899999999999999999999998885
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=3.6e-24 Score=220.14 Aligned_cols=133 Identities=27% Similarity=0.342 Sum_probs=114.6
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~ 97 (923)
|.||||+||..|+.++|+.|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++.+|..|.||||+|+..|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~ 152 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence 88999999999999999999999999999999999999999999999999999999 99999999999999999999995
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCC
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG 153 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g 153 (923)
.+++++|+++|++++.+|. .|.||||+|+..|+.++++.|++.|++....|..|
T Consensus 153 -~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 153 -ADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp -HHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSHHHHHHHC----------------
T ss_pred -HHHHHHHHHcCCCCccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999999999 99999999999999999999999999877776554
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5.8e-24 Score=221.66 Aligned_cols=136 Identities=23% Similarity=0.289 Sum_probs=128.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHHHHHHHhcC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF 97 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL~~Aa~~g~ 97 (923)
|.||||+||..|+.++|+.|++ |++++.+|..|+||||+|+..|+.++|++|+++|+++|.+| ..|.||||+|+..|+
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 8999999999999999999999 99999999999999999999999999999999999999998 889999999999995
Q ss_pred CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899 98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 177 (923)
Q Consensus 98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L 177 (923)
.+++++|+++|++++.+|. .|.||||+|+..++ +..+.||||+|+..|+.+ ++++|
T Consensus 124 -~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~-----iv~~L 179 (244)
T 3ui2_A 124 -PEVVEALVELGADIEVEDE-RGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEK-----VINVL 179 (244)
T ss_dssp -HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHH-----HHHHH
T ss_pred -HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHH-----HHHHH
Confidence 9999999999999999999 99999999996332 256899999999999999 99999
Q ss_pred HH
Q psy3899 178 TE 179 (923)
Q Consensus 178 ~~ 179 (923)
.+
T Consensus 180 ~~ 181 (244)
T 3ui2_A 180 EG 181 (244)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.5e-23 Score=193.45 Aligned_cols=117 Identities=25% Similarity=0.401 Sum_probs=102.5
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899 17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96 (923)
Q Consensus 17 ~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g 96 (923)
..|.||||+|+..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHH
Q psy3899 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 135 (923)
Q Consensus 97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~i 135 (923)
+ .+++++|+++|++++.+|. .|.||||+|+..+..++
T Consensus 85 ~-~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 85 H-VSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKAL 121 (123)
T ss_dssp C-HHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHHHHHH
T ss_pred C-HHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHHHHHH
Confidence 4 8999999999999999988 99999999955444443
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=225.78 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=126.7
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHh---CcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTAL 89 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~d~~g~TpL 89 (923)
+.++|+.|+..|+.+.|+.|++.|++++. +|..|+||||+|+.. |+.+++++|+++|+++|.+|.+|+|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 45789999999999999999999999998 699999999999997 899999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCC
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA 166 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~ 166 (923)
|+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++ .|.||||+|++.|+.
T Consensus 231 h~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYN-QPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTT-CHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999 49999999999999999999 999999999999999999999999986 589999999998864
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.7e-22 Score=200.65 Aligned_cols=140 Identities=24% Similarity=0.257 Sum_probs=129.9
Q ss_pred CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHH
Q psy3899 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAA 620 (923)
Q Consensus 542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~A~ 620 (923)
+..|.||||+|+..|+.++++.|++ |++++..+.. |+||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3578999999999999999999999 9999987654 9999999999999999999999999999998 88999999999
Q ss_pred HcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q psy3899 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700 (923)
Q Consensus 621 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll 700 (923)
..|+.+++++|+++|++++.+|..|.||||+|+..+.. . .+.|||++|+..|..+++++|.
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~-~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------T-PKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------C-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------c-ccccHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999999987622 2 6789999999999999999998
Q ss_pred HC
Q psy3899 701 SH 702 (923)
Q Consensus 701 ~~ 702 (923)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 75
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.2e-22 Score=187.30 Aligned_cols=114 Identities=25% Similarity=0.248 Sum_probs=107.4
Q ss_pred CCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHH
Q psy3899 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 128 (923)
Q Consensus 49 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~ 128 (923)
++.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+ .+++++|++.|++++.+|. .|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGADINAPDK-HHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTC-HHHHHHHHTTTCCTTCCCT-TSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence 5678999999999999999999999999999999999999999999994 9999999999999999999 9999999999
Q ss_pred HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899 129 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164 (923)
Q Consensus 129 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g 164 (923)
..|+.++|++|+++|++++.+|..|.||||+|...+
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence 999999999999999999999999999999996554
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.4e-22 Score=209.41 Aligned_cols=142 Identities=24% Similarity=0.254 Sum_probs=131.8
Q ss_pred CCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHH
Q psy3899 543 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQ 621 (923)
Q Consensus 543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~A~~ 621 (923)
..|.||||+|+..|+.++++.|++ |++++..+.. |.||||+|+..|+.++|++|+++|++++.+| ..|.||||+|+.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 468999999999999999999999 9999987655 9999999999999999999999999999998 889999999999
Q ss_pred cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899 622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 701 (923)
Q Consensus 622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~ 701 (923)
.|+.+++++|+++|++++.+|..|.||||+|+..+.. . .+.||||+|+..|+.+++++|++
T Consensus 121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------------~-~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------T-PKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------------C-CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------------c-CCCCHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999999999975521 2 68999999999999999999999
Q ss_pred CCCC
Q psy3899 702 HTSS 705 (923)
Q Consensus 702 ~gad 705 (923)
++.+
T Consensus 182 ~~~~ 185 (244)
T 3ui2_A 182 QVFE 185 (244)
T ss_dssp HHEE
T ss_pred hccc
Confidence 8654
No 101
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=9.1e-22 Score=215.77 Aligned_cols=144 Identities=21% Similarity=0.197 Sum_probs=119.8
Q ss_pred CccHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHh
Q psy3899 19 QATPLHWATRQ-GHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95 (923)
Q Consensus 19 g~T~Lh~Aa~~-g~~~~V~~Ll~~ga~~~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~ 95 (923)
+.|+||.|+.. |+.++|+.|+++|++++..| ..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 56899999999 99999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCC---CCCCCCCCCCChHHHHHhhc
Q psy3899 96 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS---SLEIPNAQGLTPFMLLEENI 164 (923)
Q Consensus 96 g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga---~~~~~~~~g~t~L~~A~~~g 164 (923)
|+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+..+. +....+..+.|+++++....
T Consensus 279 g~-~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 279 GH-TGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp TC-HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred Cc-HHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 95 9999999999999999999 99999999999999999999998764 34456677888888776553
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=7.1e-22 Score=209.56 Aligned_cols=125 Identities=23% Similarity=0.214 Sum_probs=117.9
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHh---CcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPT------LMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTAL 89 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~------~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~d~~g~TpL 89 (923)
..++|+.|+..|+.+.|+.+++.|++++ ..|..|+||||+|+.. |+.+++++|+++|+++|.+|..|+|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 4589999999999999999999999954 4588999999999999 899999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~ 145 (923)
|+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++
T Consensus 210 h~A~~~g~-~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 210 HYCCLTDN-AECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHTTC-HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcCC-HHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999994 9999999999999999999 999999999999999999999999874
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=7.3e-22 Score=211.94 Aligned_cols=137 Identities=21% Similarity=0.151 Sum_probs=64.7
Q ss_pred cHhHHHHHcCcHHHHHHHHhCCCccccc-----CCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy3899 547 TLLHWAAINNRIEIMKYFISQGAIVDAI-----GGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618 (923)
Q Consensus 547 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~ 618 (923)
++||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4455555555555555555555554432 222345555555544 44555555555555555555555555555
Q ss_pred HHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcC
Q psy3899 619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK 691 (923)
Q Consensus 619 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~ 691 (923)
|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++ .|.||||+|+..|
T Consensus 233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~-~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH-HKECEELLEQAQAG-------TFAFPLHVDYSWV 297 (301)
T ss_dssp HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHT-CHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence 55555555555555555555555555555555554444 44455555444432 2445555554444
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=1.3e-21 Score=225.98 Aligned_cols=136 Identities=19% Similarity=0.159 Sum_probs=119.9
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHH---hCcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQ---FGHTRIVAYLVAKGINVNLQDRNGMTAL 89 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~------d~~g~TpLh~Aa~---~g~~~iv~~Ll~~ga~vn~~d~~g~TpL 89 (923)
..+.||.|+..|+.+.|+.|++.|+++|.+ |..|+||||+|+. .|+.++|++|+++|+++|.+|.+|+|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 457899999999999999999999999988 8999999999966 9999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHh
Q psy3899 90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE 162 (923)
Q Consensus 90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~ 162 (923)
|+||..|+ .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 212 h~A~~~g~-~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQ-PDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTC-HHHHHHHHHTCCCCSCCCT-TCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHcCC-HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 99999995 9999999999999999999 999999999999999999999999998766 57776654
No 105
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.7e-22 Score=203.65 Aligned_cols=133 Identities=27% Similarity=0.324 Sum_probs=94.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHhhC
Q psy3899 579 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVF 657 (923)
Q Consensus 579 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~a~~~~~ 657 (923)
|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~- 151 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG- 151 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT-
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC-
Confidence 67788888888888888888887888777777788888888888888888888877 7888888888888888888777
Q ss_pred CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy3899 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG 713 (923)
Q Consensus 658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g 713 (923)
+.+++++|+++|++++.+|. .|.||||+|+..|+.++++.|++.|++.+.+|.+|
T Consensus 152 ~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 152 YADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp CHHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSHHHHHHHC----------------
T ss_pred CHHHHHHHHHcCCCCccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 77888888888888888777 78888888888888888888888888777666544
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=5e-21 Score=166.66 Aligned_cols=92 Identities=42% Similarity=0.621 Sum_probs=71.0
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~- 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH- 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC-
Confidence 6777888887777788887777777777777777788887777777777777777777777777777777777777773
Q ss_pred CchhHHHHhcCCC
Q psy3899 99 LDPTRLLITFGAS 111 (923)
Q Consensus 99 ~~vv~lLl~~ga~ 111 (923)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 7777777777764
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=4e-20 Score=196.08 Aligned_cols=171 Identities=20% Similarity=0.153 Sum_probs=140.0
Q ss_pred HhcCCCCC-----CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccC------------------------------CC
Q psy3899 533 EAGQDVNE-----PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG------------------------------GD 577 (923)
Q Consensus 533 ~~~~~~~~-----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------------------------------~~ 577 (923)
.-|..++. .|.++.+.++.+...|+..+.+++...-....... ..
T Consensus 49 ~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~ 128 (278)
T 1dcq_A 49 ELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA 128 (278)
T ss_dssp HHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHH
T ss_pred hcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 33666653 67889999999999999877766643221110000 00
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHc---CcHHHHHHHHHcCCCCCccCCCCCcH
Q psy3899 578 LQATPLHWATRQGHLDSVVLLIQHGADPT------LMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTA 648 (923)
Q Consensus 578 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~ 648 (923)
...++|+.|+..|+.+.++.+++.|++++ ..|..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence 12368999999999999999999999844 4578899999999998 88999999999999999999999999
Q ss_pred HHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705 (923)
Q Consensus 649 Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad 705 (923)
||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++
T Consensus 209 Lh~A~~~g-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTD-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcC-CHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999888 89999999999999999998 899999999999999999999999884
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.2e-20 Score=164.30 Aligned_cols=93 Identities=32% Similarity=0.464 Sum_probs=88.8
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHh
Q psy3899 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130 (923)
Q Consensus 51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~ 130 (923)
+|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence 5899999999999999999999999999999999999999999999 49999999999999999999 999999999999
Q ss_pred CcHHHHHHHHhcCCC
Q psy3899 131 KNHVAITTLVSHTSS 145 (923)
Q Consensus 131 g~~~iv~~Ll~~ga~ 145 (923)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999975
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=3e-20 Score=203.70 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=115.7
Q ss_pred CchHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Q psy3899 579 QATPLHWATRQ-GHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655 (923)
Q Consensus 579 g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~ 655 (923)
+.|+||+|+.. |+.++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 57899999999 99999999999999999988 8899999999999999999999999999999999999999999988
Q ss_pred hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHhc
Q psy3899 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS---SLEIPNAQGLTPFMLLEEN 723 (923)
Q Consensus 656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~tpl~~a~~~ 723 (923)
+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++.+. +....+..+.|+++++...
T Consensus 279 g-~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 279 G-HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp T-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred C-cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 8 89999999999999999998 99999999999999999999998864 4456677888999987764
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=4.3e-20 Score=213.27 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=76.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHH---cCcHHHHHHHHHcCCCCCccCCCCCcHHHH
Q psy3899 581 TPLHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQ---FGHTRIVAYLVAKGINVNLQDRNGMTALMW 651 (923)
Q Consensus 581 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~Lh~A~~---~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~ 651 (923)
+.||.|+..|+.+.|+.|+++|+|++.. |..|.||||+|++ .|+.+++++|+++|+++|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666666666666666666665554 5566666666644 566666666666666666666666666666
Q ss_pred HHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy3899 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709 (923)
Q Consensus 652 a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 709 (923)
|+..| +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++..
T Consensus 214 A~~~g-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 214 AALYN-QPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HTTTT-CHHHHHHHHHTCCCCSCCCT-TCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 66555 56666666666666666665 6666666666666666666666666666553
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=1.2e-20 Score=171.47 Aligned_cols=103 Identities=32% Similarity=0.427 Sum_probs=64.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899 19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98 (923)
Q Consensus 19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~ 98 (923)
|+||||+||..|+.++|+.|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus 9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~-~ 87 (115)
T 2l6b_A 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG-H 87 (115)
T ss_dssp SCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT-C
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC-C
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666666 3
Q ss_pred CchhHHHHhcCCCcccccccCCCcH
Q psy3899 99 LDPTRLLITFGASTTIQDKIHGNVA 123 (923)
Q Consensus 99 ~~vv~lLl~~ga~~~~~d~~~g~T~ 123 (923)
.+++++|+++|++++.++. .|.||
T Consensus 88 ~~~~~~Ll~~ga~~n~~~~-~~~~~ 111 (115)
T 2l6b_A 88 HEIVKLLDAKGADVNARSW-GSSHH 111 (115)
T ss_dssp HHHHHHHHTTSSSHHHHSC-CCC--
T ss_pred HHHHHHHHHcCCCCCcCCc-ccccc
Confidence 6666666666666666655 55554
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=1.6e-20 Score=170.72 Aligned_cols=109 Identities=26% Similarity=0.331 Sum_probs=103.0
Q ss_pred ccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHH
Q psy3899 47 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126 (923)
Q Consensus 47 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~ 126 (923)
.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG-HAEIVKLLLAKGADVNARSK-DGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT-CHHHHHHHTTTTCCTTCCCT-TCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCcccCC-CCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999 59999999999999999999 99999999
Q ss_pred HHHhCcHHHHHHHHhcCCCCCCCCCCCCChH
Q psy3899 127 AIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157 (923)
Q Consensus 127 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L 157 (923)
|+..|+.+++++|+++|++++.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999999874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=8.6e-18 Score=151.07 Aligned_cols=90 Identities=37% Similarity=0.447 Sum_probs=65.2
Q ss_pred ccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHH
Q psy3899 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93 (923)
Q Consensus 14 ~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa 93 (923)
.+.+ |.||||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 20 ~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 20 MGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp --CC-HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCc-cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 3444 777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCCchhHHH
Q psy3899 94 YKVFSLDPTRLL 105 (923)
Q Consensus 94 ~~g~~~~vv~lL 105 (923)
..|+ .+++++|
T Consensus 99 ~~~~-~~~~~~L 109 (110)
T 2zgd_A 99 DNGN-EDLAEIL 109 (110)
T ss_dssp HHTC-HHHHHHH
T ss_pred HcCC-HHHHHHh
Confidence 7773 6776665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=1.5e-17 Score=149.42 Aligned_cols=93 Identities=31% Similarity=0.360 Sum_probs=85.0
Q ss_pred CCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHH
Q psy3899 45 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124 (923)
Q Consensus 45 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L 124 (923)
+...|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG-HLEVVKLLLEAGADVXAQDK-FGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccc-CCCcHH
Confidence 4456889999999999999999999999999999999999999999999999 59999999999999999998 999999
Q ss_pred HHHHHhCcHHHHHHH
Q psy3899 125 HWAIYAKNHVAITTL 139 (923)
Q Consensus 125 ~~A~~~g~~~iv~~L 139 (923)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999987
No 115
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.85 E-value=1.6 Score=31.33 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=23.2
Q ss_pred cccccccCCCcCCCCCCCccccHhhhc
Q psy3899 893 LSFCSTCLVRKPIRSKHCSICNRCVAK 919 (923)
Q Consensus 893 ~~~C~~C~~~kP~Rs~HC~~C~~CV~k 919 (923)
.+.|+.|...-|++++.|+-||.--+|
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CccCCCCCCcCCCCceecCCCCCcccc
Confidence 578999999999999999999865443
No 116
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=67.30 E-value=2 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=23.6
Q ss_pred CcccccccCCCcCCCCCCCccccHhhhc
Q psy3899 892 PLSFCSTCLVRKPIRSKHCSICNRCVAK 919 (923)
Q Consensus 892 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~k 919 (923)
....|..|...-|+|+..|+-||..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 3568999999999999999999865444
No 117
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=41.79 E-value=5.5 Score=35.55 Aligned_cols=26 Identities=27% Similarity=0.660 Sum_probs=20.1
Q ss_pred CcccccccCCCcCCCC-CCCccccHhh
Q psy3899 892 PLSFCSTCLVRKPIRS-KHCSICNRCV 917 (923)
Q Consensus 892 ~~~~C~~C~~~kP~Rs-~HC~~C~~CV 917 (923)
...||..|..|.+++. +||..||-|-
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR 108 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICR 108 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEE
T ss_pred eeeEeceeecccCCCceecCCCCCcee
Confidence 4568999999977765 8888887774
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.52 E-value=9.3 Score=33.56 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=14.9
Q ss_pred ccccccCCC--cCCCCCCCccccH
Q psy3899 894 SFCSTCLVR--KPIRSKHCSICNR 915 (923)
Q Consensus 894 ~~C~~C~~~--kP~Rs~HC~~C~~ 915 (923)
..|..|... -..|-|||+.||+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCCcCcCCccccccccccCCCCCe
Confidence 457777652 2357789988875
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.86 E-value=11 Score=36.89 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=16.3
Q ss_pred ccccccCCC--cCCCCCCCccccHh
Q psy3899 894 SFCSTCLVR--KPIRSKHCSICNRC 916 (923)
Q Consensus 894 ~~C~~C~~~--kP~Rs~HC~~C~~C 916 (923)
..|..|... --.|-|||+.||+.
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v 186 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQV 186 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CccCCCCCccCCcccccccCCcCCE
Confidence 568888741 23578999999863
No 120
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.84 E-value=15 Score=29.87 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=16.1
Q ss_pred CcccccccCCC--cCCCCCCCccccH
Q psy3899 892 PLSFCSTCLVR--KPIRSKHCSICNR 915 (923)
Q Consensus 892 ~~~~C~~C~~~--kP~Rs~HC~~C~~ 915 (923)
....|..|... --.|-|||+.||+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCC
Confidence 34568888751 2356799998875
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.67 E-value=9.4 Score=29.85 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=15.8
Q ss_pred ccccccCCC--cCCCCCCCccccH
Q psy3899 894 SFCSTCLVR--KPIRSKHCSICNR 915 (923)
Q Consensus 894 ~~C~~C~~~--kP~Rs~HC~~C~~ 915 (923)
.-|..|... --.|-|||+.||+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCCCCccCCccccccCCCCCE
Confidence 458888752 2357899999986
No 122
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.11 E-value=37 Score=22.38 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=15.8
Q ss_pred cHHHHHHHcCCHHHHHHHHH
Q psy3899 21 TPLHWATRQGHLDSVVLLIQ 40 (923)
Q Consensus 21 T~Lh~Aa~~g~~~~V~~Ll~ 40 (923)
.-+..||+.|+.+.|+.|-.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 44678899999999988754
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.85 E-value=12 Score=32.51 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=15.6
Q ss_pred ccccccCC--CcCCCCCCCccccH
Q psy3899 894 SFCSTCLV--RKPIRSKHCSICNR 915 (923)
Q Consensus 894 ~~C~~C~~--~kP~Rs~HC~~C~~ 915 (923)
..|..|.. .-..|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 45888864 23457899999976
No 124
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.42 E-value=24 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=13.6
Q ss_pred cccccCCCcCCCCCCCccc
Q psy3899 895 FCSTCLVRKPIRSKHCSIC 913 (923)
Q Consensus 895 ~C~~C~~~kP~Rs~HC~~C 913 (923)
-|.+|..+-||-..||.-|
T Consensus 13 kC~~C~k~N~Pl~ryC~rC 31 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRC 31 (53)
T ss_dssp ECSSSCCEECSSCCBCTTT
T ss_pred ecccccccCCCccchhHHH
Confidence 3888888777777776554
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=12 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=16.1
Q ss_pred ccccccCC--CcCCCCCCCccccH
Q psy3899 894 SFCSTCLV--RKPIRSKHCSICNR 915 (923)
Q Consensus 894 ~~C~~C~~--~kP~Rs~HC~~C~~ 915 (923)
..|..|.. ---.|-|||+.||+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCC
T ss_pred CcCcCcCCccccchhhhhhcCCCc
Confidence 46888865 23467899999986
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.19 E-value=14 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.724 Sum_probs=15.8
Q ss_pred ccccccCC--CcCCCCCCCccccH
Q psy3899 894 SFCSTCLV--RKPIRSKHCSICNR 915 (923)
Q Consensus 894 ~~C~~C~~--~kP~Rs~HC~~C~~ 915 (923)
..|..|.. ---.|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCcCCcccCccccccCCCCCC
Confidence 46888875 22357799999886
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.59 E-value=14 Score=29.74 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=16.1
Q ss_pred cccccccCCC--cCCCCCCCccccH
Q psy3899 893 LSFCSTCLVR--KPIRSKHCSICNR 915 (923)
Q Consensus 893 ~~~C~~C~~~--kP~Rs~HC~~C~~ 915 (923)
...|..|... --.|-|||+.||+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCC
T ss_pred CCCCcCcCCccccchhcccccCCCc
Confidence 3468888652 2357799999875
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.43 E-value=16 Score=35.91 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=15.8
Q ss_pred ccccccCC-C-cCCCCCCCccccHh
Q psy3899 894 SFCSTCLV-R-KPIRSKHCSICNRC 916 (923)
Q Consensus 894 ~~C~~C~~-~-kP~Rs~HC~~C~~C 916 (923)
..|..|.. + ---|-|||+.||+.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCE
Confidence 46888863 2 22467999999874
No 129
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.77 E-value=34 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.836 Sum_probs=14.4
Q ss_pred cccccCCCcCCCCCCCccc
Q psy3899 895 FCSTCLVRKPIRSKHCSIC 913 (923)
Q Consensus 895 ~C~~C~~~kP~Rs~HC~~C 913 (923)
-|.+|...-||-..||.-|
T Consensus 15 kC~~C~~~N~Pl~r~C~rC 33 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp ECTTTCCEECSSCSSCTTT
T ss_pred ecccccccCCCccchhhHH
Confidence 4888888888887777554
No 130
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.91 E-value=20 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=13.3
Q ss_pred cccccccCC---CcCCC-CCCCcccc
Q psy3899 893 LSFCSTCLV---RKPIR-SKHCSICN 914 (923)
Q Consensus 893 ~~~C~~C~~---~kP~R-s~HC~~C~ 914 (923)
.++|+.|.. ..|.. .++|..|+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSC
T ss_pred cccCCCCCCceEEecCCCeEECCCCC
Confidence 579999975 22221 35677665
Done!