RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3899
(923 letters)
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 238 bits (609), Expect = 1e-72
Identities = 110/190 (57%), Positives = 144/190 (75%), Gaps = 2/190 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQG
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
HL VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LM
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
W+AY+ S+DPTRLL+TF S + DK H N ALHWA+ + + L+ ++++
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDAQ 206
Query: 710 NAQGLTPFML 719
N +G + L
Sbjct: 207 NIKGESALDL 216
Score = 196 bits (502), Expect = 1e-57
Identities = 88/159 (55%), Positives = 118/159 (74%), Gaps = 2/159 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
KY+IS+GAIVD +GGDL +TPLHWATRQGHL VV L+++GADP+L+D EG +CIH AAQ
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
FGHT IVAYL+AKG +V++ D+NGMT LMW+AY+ S+DPTRLL+TF S + DK H N
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
ALHWA+ + + L+ ++++ N +G + L
Sbjct: 179 TALHWAVL-AGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 154 bits (391), Expect = 2e-42
Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 6/182 (3%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
+ D + + A E + + G V + T LHWA +D V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKY 60
Query: 598 LIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
I GA + + ST +H A + GH +V L+ G + +L D G + + +A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF- 119
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGL 714
LI G + D+ +G L WA Y + V T L++ S+ +
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 715 TP 716
T
Sbjct: 179 TA 180
Score = 153 bits (390), Expect = 2e-42
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)
Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G V++ + T LHWA + ++ + GA I G+ + +H A + G
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFG 120
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGINVNLQDR-NGMTA 648
H V LI G D +MD G T + AA H+ L+ ++VNL D+ + TA
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
L W+ + LL+ GA+ Q+ G AL A + +V + L
Sbjct: 181 LHWAVLAG-NTTVISLLLEAGANVDAQNI-KGESALDLAKQ-RKNVWMINHLQEA 232
Score = 135 bits (342), Expect = 7e-36
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G D + D E + +H AA I+ Y I++G VD + + TPL WA + H
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRTH 154
Query: 592 LDSVV-LLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
LL+ L D +T +H A G+T +++ L+ G NV+ Q+ G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 650 MWSAYKVFSLDPTRLLITFGA 670
+ + ++ L
Sbjct: 215 DLAKQRK-NVWMINHLQEARQ 234
Score = 129 bits (326), Expect = 9e-34
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+ AT+ G + L++ G D D E T +H AA +V Y ++KG V+
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 81 QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 138
+ T L W+ + L L+ +GA ++ D G +H A H +I
Sbjct: 71 LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
L++ +++ + G+TP M
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148
Score = 129 bits (326), Expect = 9e-34
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+ AT+ G + L++ G D D E T +H AA +V Y ++KG V+
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 641 QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 698
+ T L W+ + L L+ +GA ++ D G +H A H +I
Sbjct: 71 LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127
Query: 699 LVSHTSSLEIPNAQGLTPFML 719
L++ +++ + G+TP M
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148
Score = 126 bits (319), Expect = 7e-33
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAA 60
+ + G V + T LHWA +D V I GA + + ST +H A
Sbjct: 26 RELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ GH +V L+ G + +L D G + + +A LI G + D+ +G
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQDVDMMDQ-NG 142
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGLTP 156
L WA Y + V T L++ S+ + T
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Score = 124 bits (314), Expect = 4e-32
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA I G+ + +H A + GH V LI G D +MD G T + AA
Sbjct: 93 VQLMKYGADPSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Query: 62 FGHTR-IVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
H+ L+ ++VNL D+ + TAL W+ + LL+ GA+ Q+
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG-NTTVISLLLEAGANVDAQNI-K 209
Query: 120 GNVALHWAIYAKNHVAIT-TLVSH 142
G AL A + +V + L
Sbjct: 210 GESALDLAKQ-RKNVWMINHLQEA 232
Score = 117 bits (296), Expect = 1e-29
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ GQDV+ D +T L WAA + ++ + ++ V+ + T LHWA G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
+ + LL++ GA+ + +G + + A Q + ++ +L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 104 bits (261), Expect = 5e-25
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMD-SEGSTCIHQ 58
+ Y I++G VD + + TPL WA + H LL+ L D +T +H
Sbjct: 125 VAYLIAKGQDVDMMDQNGM-TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 59 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
A G+T +++ L+ G NV+ Q+ G +AL + + ++ L
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK-NVWMINHLQEARQ 234
Score = 96.3 bits (241), Expect = 2e-22
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 48 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
+D + I +A Q+G LV G +V D+ +T L W+A +D + I+
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
GA + LHWA + H+++ L+ + + + + +G + L
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 96.3 bits (241), Expect = 2e-22
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
+D + I +A Q+G LV G +V D+ +T L W+A +D + I+
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63
Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
GA + LHWA + H+++ L+ + + + + +G + L
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 89.4 bits (223), Expect = 4e-20
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ V+ + T LHWA G+ + LL++ GA+ + +G + + A Q
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Query: 62 FGHTRIVAYLVAKGINVN 79
+ ++ +L
Sbjct: 220 RKNVWMINHLQEARQAKG 237
Score = 51.7 bits (125), Expect = 3e-07
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
++ D ++ + + R L+ G DK LHWA N + +
Sbjct: 1 HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57
Query: 137 T-TLVSH 142
+S
Sbjct: 58 VKYYISK 64
Score = 51.7 bits (125), Expect = 3e-07
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
++ D ++ + + R L+ G DK LHWA N + +
Sbjct: 1 HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57
Query: 697 T-TLVSH 702
+S
Sbjct: 58 VKYYISK 64
Score = 47.0 bits (113), Expect = 9e-06
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
+EAG +V+ + + + L A + ++ +
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 178 bits (454), Expect = 1e-48
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 5/190 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ G N + + T LH AA E+ KY + A V+A D Q TPLH A R G
Sbjct: 33 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
H + V LL+++ A+P L + G T +H AA+ GH V L+ K + + G T L
Sbjct: 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIP 709
+A + LL+ A K +G LH A++ N++ I L+ S P
Sbjct: 152 VAAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSP 208
Query: 710 NAQGLTPFML 719
G TP +
Sbjct: 209 AWNGYTPLHI 218
Score = 178 bits (453), Expect = 1e-48
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G +T LH A+ + I+K + +GA + ++ TPLH A R GH +
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV 62
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
L+Q+ A + T +H AA+ GHT +V L+ N NL G T L +A
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 655 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQG 713
+ ++ L+ AS K G LH A V + L+ + G
Sbjct: 123 EG-HVETVLALLEKEASQACMTK-KGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNG 179
Query: 714 LTPFML 719
LTP +
Sbjct: 180 LTPLHV 185
Score = 173 bits (442), Expect = 4e-47
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E + N + T LH AA +E + + + A + TPLH A + G
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGK 158
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ LL++ A P G T +H A + IV L+ +G + + NG T L
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
+A + ++ R L+ +G S + G LH A + H + L+S ++ + N
Sbjct: 219 AAKQN-QVEVARSLLQYGGSANAESV-QGVTPLHLAAQ-EGHAEMVALLLSKQANGNLGN 275
Query: 711 AQGLTPFML 719
GLTP L
Sbjct: 276 KSGLTPLHL 284
Score = 173 bits (440), Expect = 7e-47
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E N +T LH A +N ++I+K + +G + + TPLH A +Q
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQ 224
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
++ L+Q+G +G T +H AAQ GH +VA L++K N NL +++G+T L
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
A + + +LI G + G LH A + ++ + L+ H + +
Sbjct: 285 VAQEG-HVPVADVLIKHGVMVDATTR-MGYTPLHVASH-YGNIKLVKFLLQHQADVNAKT 341
Query: 711 AQGLTPFML 719
G +P
Sbjct: 342 KLGYSPLHQ 350
Score = 171 bits (436), Expect = 2e-46
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G + P T LH AA N++E+ + + G +A TPLH A ++GH
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGH 257
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ V LL+ A+ L + G T +H AQ GH + L+ G+ V+ R G T L
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
+++ ++ + L+ A + K G LH A + H I L+ + +S +
Sbjct: 318 ASHY-GNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQ-QGHTDIVTLLLKNGASPNEVS 374
Query: 711 AQGLTPFML 719
+ G TP +
Sbjct: 375 SDGTTPLAI 383
Score = 153 bits (389), Expect = 4e-40
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ + N + +T LH A + + I G +VDA TPLH A+ G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGN 323
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ V L+QH AD G + +HQAAQ GHT IV L+ G + N +G T L
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 652 SAYKVFSLDPTRLLITF---GASTTIQDKIHGNVALH 685
+ + T +L + + DK H
Sbjct: 384 AKRL-GYISVTDVLKVVTDETSFVLVSDK-HRMSFPE 418
Score = 147 bits (374), Expect = 3e-38
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
KY + A V+A D Q TPLH A R GH + V LL+++ A+P L + G T +H AA
Sbjct: 63 AKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ GH V L+ K + + G T L +A + LL+ A K +G
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAAGK-NG 179
Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
LH A++ N++ I L+ S P G TP +
Sbjct: 180 LTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Score = 146 bits (372), Expect = 6e-38
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + +GA + ++ TPLH A R GH + L+Q+ A + T +H AA
Sbjct: 30 VKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ GHT +V L+ N NL G T L +A + ++ L+ AS K G
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG-HVETVLALLEKEASQACMTK-KG 146
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A V + L+ + GLTP +
Sbjct: 147 FTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNGLTPLHV 185
Score = 143 bits (362), Expect = 1e-36
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ + + A + TPLH A + G + LL++ A P G T +H A
Sbjct: 129 VLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ IV L+ +G + + NG T L +A + ++ R L+ +G S + G
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN-QVEVARSLLQYGGSANAESV-QG 245
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A + H + L+S ++ + N GLTP L
Sbjct: 246 VTPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Score = 141 bits (359), Expect = 3e-36
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + +G + + TPLH A +Q ++ L+Q+G +G T +H AAQ
Sbjct: 196 KLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
GH +VA L++K N NL +++G+T L A + + +LI G + G
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG-HVPVADVLIKHGVMVDATTR-MGY 312
Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A + ++ + L+ H + + G +P
Sbjct: 313 TPLHVASH-YGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Score = 141 bits (357), Expect = 5e-36
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 6 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 65
S G G TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT
Sbjct: 2 SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 66 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
+ YL+ VN + ++ T L +A + +LL+ A+ + G+ LH
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118
Query: 126 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
A + HV L+ +S +G TP +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152
Score = 141 bits (357), Expect = 5e-36
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 566 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 625
S G G TPLH A+ GHL V L+Q GA P + + + T +H AA+ GHT
Sbjct: 2 SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 626 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
+ YL+ VN + ++ T L +A + +LL+ A+ + G+ LH
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118
Query: 686 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
A + HV L+ +S +G TP +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152
Score = 140 bits (355), Expect = 9e-36
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ + G +A TPLH A ++GH + V LL+ A+ L + G T +H A
Sbjct: 228 ARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
Q GH + L+ G+ V+ R G T L +++ ++ + L+ A + K G
Sbjct: 287 QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-GNIKLVKFLLQHQADVNAKTK-LG 344
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A + H I L+ + +S ++ G TP +
Sbjct: 345 YSPLHQAAQ-QGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Score = 134 bits (340), Expect = 9e-34
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+S+ A + TPLH ++GH+ +LI+HG G T +H A+
Sbjct: 262 ALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
+G+ ++V +L+ +VN + + G + L +A + D LL+ GAS G
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSS-DGT 378
Query: 122 VALHWAIYAKNHVAIT----TLVSHTSSLEIPNAQGLTP 156
L A ++++T + TS + + + ++
Sbjct: 379 TPLAIAKR-LGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Score = 121 bits (306), Expect = 2e-29
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
I G +VDA TPLH A+ G++ V L+QH AD G + +HQAA
Sbjct: 294 ADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 352
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF---GASTTIQDK 117
Q GHT IV L+ G + N +G T L + + T +L + + DK
Sbjct: 353 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVLKVVTDETSFVLVSDK 411
Query: 118 IHGNVALH 125
H
Sbjct: 412 -HRMSFPE 418
Score = 66.7 bits (164), Expect = 1e-11
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 28/101 (27%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ DVN + LH AA +I+ + GA + + D TPL A R G+
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGY 389
Query: 592 ---------------------------LDSVVLLIQHGADP 605
++V ++ D
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDE 430
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 170 bits (434), Expect = 3e-48
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
+ + LH AA ++I + GA +D D + TPL A HL++V
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVK 61
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 655
LI+ GA D+EGSTC+H AA+ GH +V YL++ G ++VN QD G T ++W+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 714
+D +LL++ G+ I+D N+ LHWA + V I L++ L N G
Sbjct: 122 K-HVDLVKLLLSKGSDINIRDN-EENICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 715 TP 716
+P
Sbjct: 179 SP 180
Score = 161 bits (410), Expect = 5e-45
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
V+AG +++ + T L AA NN +E +KY I GA+VD + T LH A ++G
Sbjct: 30 LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKG 88
Query: 591 HLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
H + V L+ +G D D G T + A ++ H +V L++KG ++N++D L
Sbjct: 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEI 708
W+A+ +D +L+ + HG+ LH A +N +S S + +
Sbjct: 149 HWAAFS-GCVDIAEILLAAKCDLHAVNI-HGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL 205
Query: 709 PNAQGLTPFML 719
N +G TP
Sbjct: 206 KNKEGETPLQC 216
Score = 159 bits (404), Expect = 3e-44
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
++AG V+ D+E T LH AA E+++Y +S G + V+ TP+ WAT
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYK 122
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
H+D V LL+ G+D + D+E + C+H AA G I L+A +++ + +G + L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
+A + D L ++ + T+++K G L A + V +
Sbjct: 183 IAARE-NRYDCVVLFLSRDSDVTLKNK-EGETPLQCASL-NSQVWSALQMSKA 232
Score = 141 bits (357), Expect = 5e-38
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA +D D + TPL A HL++V LI+ GA D+EGSTC+H AA+
Sbjct: 28 HMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK 86
Query: 62 FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
GH +V YL++ G ++VN QD G T ++W+ +D +LL++ G+ I+D
Sbjct: 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK-HVDLVKLLLSKGSDINIRDN-EE 144
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
N+ LHWA + V I L++ L N G +P
Sbjct: 145 NICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGDSP 180
Score = 130 bits (329), Expect = 3e-34
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA 60
KY I GA+VD + T LH A ++GH + V L+ +G D D G T + A
Sbjct: 61 KYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
++ H +V L++KG ++N++D L W+A+ +D +L+ + HG
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLHAVNI-HG 177
Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
+ LH A +N +S S + + N +G TP
Sbjct: 178 DSPLHIAAR-ENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216
Score = 128 bits (325), Expect = 1e-33
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 2 KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+Y +S G + V+ TP+ WAT H+D V LL+ G+D + D+E + C+H AA
Sbjct: 94 QYLLSNGQMDVNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
G I L+A +++ + +G + L +A + D L ++ + T+++K G
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE-NRYDCVVLFLSRDSDVTLKNK-EG 210
Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
L A + V +
Sbjct: 211 ETPLQCASL-NSQVWSALQMSKA 232
Score = 122 bits (309), Expect = 1e-31
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+PLH A GH+D +L+Q GA+ + T + +AA+ H V YL+ G V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 138
+D G T L +A K + + L++ G QD G + WA HV +
Sbjct: 73 KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
L+S S + I + +
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150
Score = 122 bits (309), Expect = 1e-31
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+PLH A GH+D +L+Q GA+ + T + +AA+ H V YL+ G V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 698
+D G T L +A K + + L++ G QD G + WA HV +
Sbjct: 73 KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129
Query: 699 LVSHTSSLEIPNAQGLTPFML 719
L+S S + I + +
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150
Score = 115 bits (290), Expect = 5e-29
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G D+N D+E LHWAA + ++I + ++ + A+ +PLH A R+
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENR 189
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
D VVL + +D TL + EG T + A+ + +
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 109 bits (276), Expect = 3e-27
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K +S+G+ ++ + LHWA G +D +L+ D ++ G + +H AA
Sbjct: 127 VKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ V +++ +V L+++ G T L ++ + +
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS-QVWSALQMSKALQ 234
Score = 84.0 bits (209), Expect = 3e-18
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ + A+ +PLH A R+ D VVL + +D TL + EG T + A+
Sbjct: 161 EILLAAKCDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Query: 62 FGHTRIVAYLVAKGIN 77
+ +
Sbjct: 220 NSQVWSALQMSKALQD 235
Score = 83.6 bits (208), Expect = 4e-18
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
+ +H AA+ GH I LV G N++ + T LM +A L+ + LI
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
GA +D G+ LH A K H + L+S+ + + G TP +
Sbjct: 67 GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
Score = 83.6 bits (208), Expect = 4e-18
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
+ +H AA+ GH I LV G N++ + T LM +A L+ + LI
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66
Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 719
GA +D G+ LH A K H + L+S+ + + G TP +
Sbjct: 67 GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
Score = 57.8 bits (141), Expect = 3e-09
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 76 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 135
+N ++ +N + L +A +D +L+ GA+ + L A NH+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58
Query: 136 IT-TLVSHTSSLEIPNAQGLTPFML 159
L+ + ++ +A+G T L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHL 83
Score = 57.8 bits (141), Expect = 3e-09
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 695
+N ++ +N + L +A +D +L+ GA+ + L A NH+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58
Query: 696 IT-TLVSHTSSLEIPNAQGLTPFML 719
L+ + ++ +A+G T L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHL 83
Score = 44.3 bits (106), Expect = 7e-05
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
F+ DV + E T L A++N+++
Sbjct: 196 FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 159 bits (404), Expect = 4e-45
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 4/171 (2%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
+H A ++ +K + +G + + TPL WA+ G +++V L++ GADP
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
++ E + + A+ G+T IV L+ + +++N+ D NG T L+++ + L+
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALL 122
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
GA T + G + A+ + + + +H L N P
Sbjct: 123 ARGADLTTEAD-SGYTPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 145 bits (368), Expect = 3e-40
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 532 VEAGQD-VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G + VN+PD T L WA+ IE +++ + GA + + + + L A+ G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGG 80
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ D V LL++ D + D G T + A + H + V L+A+G ++ + +G T +
Sbjct: 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
+ +++ +
Sbjct: 141 LAVALG-YRKVQQVIENHILKLFQSNL 166
Score = 137 bits (347), Expect = 2e-37
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + +G + + TPL WA+ G +++V L++ GADP ++ E + + A+
Sbjct: 19 KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G+T IV L+ + +++N+ D NG T L+++ + L+ GA T + G
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALLARGADLTTEAD-SGY 136
Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+ A+ + + + +H L N P
Sbjct: 137 TPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 132 bits (334), Expect = 1e-35
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E G D + E + L A+ +I+ + + ++ + TPL +A R H
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNH 114
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
+ V L+ GAD T G T + A G+ ++ + + + +
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 123 bits (312), Expect = 1e-32
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
G + +H QG LD + ++ G + D G T + A+ FG V +L+
Sbjct: 1 GD---SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
Query: 74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
G + ++ + +AL ++ D LL+ I D +G L +A+ NH
Sbjct: 58 WGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDW-NGGTPLLYAVR-GNH 114
Query: 134 VAIT-TLVSHTSSLEIPNAQGLTPFML 159
V L++ + L G TP L
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDL 141
Score = 83.6 bits (208), Expect = 9e-19
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
S IHQ A G + + KG N VN D G T L+W++ ++ R L+ +GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGA 60
Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
I K AL A + I L+ + I + G TP
Sbjct: 61 DPHILAK-ERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 162 bits (412), Expect = 1e-44
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 13/184 (7%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
LL A N +++++ + GA V+ + TPLH A + D V LL++HGADP
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
L G+T AA G +++ ++KG +VN D G TA M +A + + L
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLY 125
Query: 667 TFGASTTIQDK---------IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLT 715
GA+ ++ K G AL A K HV + L+ + + + G
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 716 PFML 719
+
Sbjct: 185 ALIH 188
Score = 151 bits (384), Expect = 6e-41
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G D T AAI ++++K F+S+GA V+ T A G
Sbjct: 58 LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYG 116
Query: 591 HLDSVVLLIQHGAD----------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN 639
+ ++ L + GA+ + G+T + AA+ GH ++ L+ + G +VN
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 640 LQDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
D G AL+ + T LL+ GA ++ + G L A+ K H+ +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGL 234
Query: 697 T-TLVSHT-SSLEIPNAQGLTPFML 719
L+ + ++ G T +L
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLL 259
Score = 142 bits (362), Expect = 4e-38
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 19/188 (10%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---------T 581
F+ G DVNE D T AA+ +++ +K+ +GA V+ + T
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 582 PLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGI 636
L A +GH++ + +L+ GAD D+ G + A I L+ G
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVA 695
+VN++ G T L+ + K L + L+ D G AL A+
Sbjct: 211 DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVE-LKLKK 267
Query: 696 IT-TLVSH 702
I L
Sbjct: 268 IAELLCKR 275
Score = 139 bits (353), Expect = 8e-37
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + GA V+ + TPLH A + D V LL++HGADP L G+T AA
Sbjct: 22 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---- 117
G +++ ++KG +VN D G TA M +A + + L GA+ ++ K
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKED 140
Query: 118 -----IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
G AL A K HV + L+ + + + G +
Sbjct: 141 QERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Score = 127 bits (323), Expect = 7e-33
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLD 593
+D T L AA +E++K + + GA V+A + L A
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDS 196
Query: 594 S----VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTA 648
LL+ HGAD + G T + A + H +V L+ + I +N D +G TA
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
L+ + LL GAST D +
Sbjct: 257 LLLAVEL-KLKKIAELLCKRGASTDCGDLV 285
Score = 119 bits (300), Expect = 7e-30
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD----------PTLMDS 50
+K F+S+GA V+ T A G + ++ L + GA+ +
Sbjct: 88 LKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146
Query: 51 EGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAY---KVFSLDPTRLLI 106
G+T + AA+ GH ++ L+ + G +VN D G AL+ + T LL+
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
GA ++ + G L A+ K H+ + L+ + ++ G T +L
Sbjct: 207 DHGADVNVRGE-RGKTPLILAVE-KKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Score = 117 bits (297), Expect = 2e-29
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 15/151 (9%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVN 79
L A + +D V L++ GA+ + E G T +H A Q IV L+ G +
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
L+ +NG T + +A S+ +L ++ GA D +G A A V
Sbjct: 67 LRKKNGATPFLLAAIAG-SVKLLKLFLSKGADVNECDF-YGFTAFMEAAV-YGKVKALKF 123
Query: 139 LVSH----------TSSLEIPNAQGLTPFML 159
L E G T M
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMD 154
Score = 112 bits (283), Expect = 1e-27
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATR 588
E G DVN D+ L A +++ I + GA V+ G + TPL A
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228
Query: 589 QGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
+ HL V LL Q + DS+G T + A + +I L +G + + D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 111 bits (281), Expect = 3e-27
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 2 KYFISQGAIVDAIGGDLQA---------TPLHWATRQGHLDSVVLLIQH-GADPTLMDSE 51
K+ +GA V+ + T L A +GH++ + +L+ GAD D+
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 52 GSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
G + A I L+ G +VN++ G T L+ + K L + L+
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK-KHLGLVQRLLE 240
Query: 108 -FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
D G AL A+ I L
Sbjct: 241 QEHIEINDTDS-DGKTALLLAVE-LKLKKIAELLCKR 275
Score = 102 bits (256), Expect = 6e-24
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 1 MKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDS----VVLLIQHGADPTLMDSEGSTC 55
+K + + GA V+A + L A LL+ HGAD + G T
Sbjct: 164 LKILLDEMGADVNACDNMGR-NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222
Query: 56 IHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 114
+ A + H +V L+ + I +N D +G TAL+ + LL GAST
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDC 281
Query: 115 QDKI 118
D +
Sbjct: 282 GDLV 285
Score = 89.5 bits (223), Expect = 1e-19
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 107
E + + +A Q +V L+ G NVN Q+ G T L + D LL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
GA ++ K +G A V + +S + + + G T FM
Sbjct: 61 HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111
Score = 89.5 bits (223), Expect = 1e-19
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 667
E + + +A Q +V L+ G NVN Q+ G T L + D LL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60
Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
GA ++ K +G A V + +S + + + G T FM
Sbjct: 61 HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 162 bits (412), Expect = 1e-44
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 9/185 (4%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+ +D + D + ++A +N + ++ ++ GA+ + + + PLH A
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTK 76
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWS 652
V +L+ G D + D +G+T ++ A G+ + V V K + + G T+ +
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136
Query: 653 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA 711
+ ++ S D +H I HV + L+ + +S N+
Sbjct: 137 VMLN-DVSIVSYFLSEIPS--TFDLAILLSCIHITIK-NGHVDMMILLLDYMTSTNTNNS 192
Query: 712 QGLTP 716
P
Sbjct: 193 LLFIP 197
Score = 152 bits (386), Expect = 3e-41
Identities = 22/188 (11%), Positives = 60/188 (31%), Gaps = 13/188 (6%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ +G D ++ D + T L++A + ++ +K F+ + + G T + A
Sbjct: 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-AL 649
+ V + + +CIH + GH ++ L+ + N + +
Sbjct: 141 DVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI 199
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 708
+ ++ + L + + A + + I ++ +
Sbjct: 200 KLAIDN-KDIEMLQALFKYDIN--------IYSANLENVL-LDDAEIAKMIIEKHVEYKS 249
Query: 709 PNAQGLTP 716
+
Sbjct: 250 DSYTKDLD 257
Score = 130 bits (329), Expect = 1e-33
Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 9/158 (5%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ ++ GA+ + + + PLH A V +L+ G D + D +G+T ++ A
Sbjct: 47 VCTLLNAGALKNLLENE---FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNG-MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
G+ + V V K + + G T+ + + ++ S D
Sbjct: 104 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEIPS--TFDLAI 160
Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+H I HV + L+ + +S N+ P
Sbjct: 161 LLSCIHITIK-NGHVDMMILLLDYMTSTNTNNSLLFIP 197
Score = 121 bits (306), Expect = 1e-30
Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 13/158 (8%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K F+ + + G T + A + V + + +CIH
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITI 169
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
+ GH ++ L+ + N + + + ++ + L + +
Sbjct: 170 KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN-KDIEMLQALFKYDIN-------- 220
Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
A + + I ++ + +
Sbjct: 221 IYSANLENVL-LDDAEIAKMIIEKHVEYKSDSYTKDLD 257
Score = 110 bits (278), Expect = 5e-27
Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
+ ++ +H N +++M + + L + A ++ +
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
L ++ + + + I ++ K + +
Sbjct: 213 ALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258
Score = 94.1 bits (235), Expect = 3e-21
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T + + D D G + + A + R+V L+ G NL
Sbjct: 3 DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ L +A ++L+ G + D GN AL++A+ ++
Sbjct: 60 LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114
Query: 140 VSHTSSLEIPNAQGL-TPFML 159
V L G T F
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135
Score = 94.1 bits (235), Expect = 3e-21
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
T + + D D G + + A + R+V L+ G NL
Sbjct: 3 DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 699
+ L +A ++L+ G + D GN AL++A+ ++
Sbjct: 60 LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114
Query: 700 VSHTSSLEIPNAQGL-TPFML 719
V L G T F
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135
Score = 90.7 bits (226), Expect = 4e-20
Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 10/114 (8%)
Query: 532 VEAGQDVNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ N +S + A N IE+++ + +
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLD 232
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
+ ++I+ + I + + I + + VN +N
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRLMYVNCVKKN 285
Score = 87.2 bits (217), Expect = 7e-19
Identities = 5/88 (5%), Positives = 20/88 (22%), Gaps = 7/88 (7%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + L + A ++ + L ++ + + +
Sbjct: 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVL 230
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTAL 89
I ++ K + +
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDI 258
Score = 60.2 bits (147), Expect = 6e-10
Identities = 6/84 (7%), Positives = 20/84 (23%), Gaps = 9/84 (10%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + + + ++I+ + I +
Sbjct: 211 LQALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Query: 61 QFGHTRIVAYLVAKGINVNLQDRN 84
+ I + + VN +N
Sbjct: 263 KLDEI-ISKNKELRLMYVNCVKKN 285
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 160 bits (407), Expect = 2e-44
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G VN ++ V+ LH A + + +K + GA V+ + D TPL A G
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGS 81
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++ + + T L
Sbjct: 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
+ + L+ GA Q K + LH + L+ + + N
Sbjct: 141 ACEN-QQRACVKKLLESGADVN-QGK-GQDSPLHAVAR-TASEELACLLMDFGADTQAKN 196
Query: 711 AQGLTPFML 719
A+G P L
Sbjct: 197 AEGKRPVEL 205
Score = 160 bits (407), Expect = 3e-44
Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 7/192 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G VN ++ T L A ++ + + + GA V A+P+H A R+GH
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 113
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
++ V LI +G + S T ++ A + V L+ G +VN Q + + L
Sbjct: 114 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 172
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 711
A S + LL+ FGA T ++ G + ++ +A + +
Sbjct: 173 VARTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLA-QLFLEREGPPSLMQL 228
Query: 712 QGLTPFMLLEEN 723
L
Sbjct: 229 CRLRIRKCFGIQ 240
Score = 146 bits (372), Expect = 1e-39
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
+ +H AAI+ ++ ISQG V+ I D +PLH A GHL V +L++HGA
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
+ ++ T + A G V L+ G +V + + + + +A + ++ LI
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRG-HVECVNSLI 121
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+G + + H L+ A A L+
Sbjct: 122 AYGGNIDHKIS-HLGTPLYLACE-NQQRACVKKLLES 156
Score = 145 bits (368), Expect = 3e-39
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 9/172 (5%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G V +S+ + +H AA +E + I+ G +D L TPL+ A
Sbjct: 89 LQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQ 146
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
V L++ GAD + +H A+ + L+ G + ++ G +
Sbjct: 147 RACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+ +L + ++ + H IT ++
Sbjct: 206 VPPES---PLAQLFLEREGPPSLMQL-CRLRIRKCFGI-QQHHKITKLVLPE 252
Score = 129 bits (327), Expect = 1e-33
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 7/162 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA V A+P+H A R+GH++ V LI +G + S T ++ A +
Sbjct: 86 NLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
V L+ G +VN Q + + L A S + LL+ FGA T ++ G
Sbjct: 144 NQQRACVKKLLESGADVN-QGKGQDSPLHAVARTA-SEELACLLMDFGADTQAKNA-EGK 200
Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
+ ++ +A + + L
Sbjct: 201 RPVELVPP-ESPLA-QLFLEREGPPSLMQLCRLRIRKCFGIQ 240
Score = 124 bits (315), Expect = 4e-32
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ T L + S D LL+ GAS +Q + +H A + HV +L
Sbjct: 65 VTADWHTPLFNACVS-GSWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSL 120
Query: 140 VSHTSSLEIPNAQGLTPFML 159
+++ +++ + TP L
Sbjct: 121 IAYGGNIDHKISHLGTPLYL 140
Score = 124 bits (315), Expect = 4e-32
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
+P+H A GH S+ LI G ++ ++ + +H+A GH V L+ G VN
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 699
+ T L + S D LL+ GAS +Q + +H A + HV +L
Sbjct: 65 VTADWHTPLFNACVS-GSWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSL 120
Query: 700 VSHTSSLEIPNAQGLTPFML 719
+++ +++ + TP L
Sbjct: 121 IAYGGNIDHKISHLGTPLYL 140
Score = 123 bits (312), Expect = 1e-31
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ISQG V+ I D +PLH A GHL V +L++HGA + ++ T + A
Sbjct: 20 RNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 78
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G V L+ G +V + + + + +A + ++ LI +G + + H
Sbjct: 79 SGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRG-HVECVNSLIAYGGNIDHKIS-HLG 135
Query: 122 VALHWAIYAKNHVAIT-TLVSH 142
L+ A A L+
Sbjct: 136 TPLYLACE-NQQRACVKKLLES 156
Score = 118 bits (298), Expect = 7e-30
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ I+ G +D L TPL+ A V L++ GAD + +H A
Sbjct: 117 VNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVA 174
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ + L+ G + ++ G + + +L + ++
Sbjct: 175 RTASEELACLLMDFGADTQAKNAEGKRPVELVPPES---PLAQLFLEREGPPSLMQL-CR 230
Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
+ H IT ++
Sbjct: 231 LRIRKCFGI-QQHHKITKLVLPE 252
Score = 106 bits (268), Expect = 7e-26
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E+G DVN+ + + LH A E+ + GA A + + P+ +
Sbjct: 154 LESGADVNQGKGQ-DSPLHAVARTASEELACLLMDFGADTQAKNAEGK-RPVELVPPESP 211
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
L L ++ P+LM H +I ++ + + L
Sbjct: 212 L--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259
Score = 80.6 bits (200), Expect = 7e-17
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA A + + P+ + L L ++ P+LM
Sbjct: 183 CLLMDFGADTQAKNAEGK-RPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGI 239
Query: 62 FGHTRIVAYLVAKGINVNLQ 81
H +I ++ + + L
Sbjct: 240 QQHHKITKLVLPEDLKQFLL 259
Score = 77.1 bits (191), Expect = 1e-15
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
+ +H+AA GH + L+++G VN+ + ++ L + L ++L+ GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQ 61
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+ L A L+ H +S++ + +P
Sbjct: 62 VNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASP 104
Score = 77.1 bits (191), Expect = 1e-15
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
+ +H+AA GH + L+++G VN+ + ++ L + L ++L+ GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQ 61
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
+ L A L+ H +S++ + +P
Sbjct: 62 VNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASP 104
Score = 46.7 bits (112), Expect = 2e-05
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 84 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
+ + + +A R LI+ G + I LH A H++ L+ H
Sbjct: 2 SDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-DHVSPLHEACL-GGHLSCVKILLKH 58
Query: 143 TSSLEIPNAQGLTP 156
+ + A TP
Sbjct: 59 GAQVNGVTADWHTP 72
Score = 46.7 bits (112), Expect = 2e-05
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+ + + +A R LI+ G + I LH A H++ L+ H
Sbjct: 2 SDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-DHVSPLHEACL-GGHLSCVKILLKH 58
Query: 703 TSSLEIPNAQGLTP 716
+ + A TP
Sbjct: 59 GAQVNGVTADWHTP 72
Score = 44.3 bits (106), Expect = 8e-05
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
F+E + + + I +I K + +
Sbjct: 216 FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 156 bits (398), Expect = 3e-44
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
+H A + + I Q +++ + TPL WA G + V L+Q+GADP
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
L+ + + A G+T IV L+ G++VN D NG T L+++ + + ++L+
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLL 122
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
GA TI+ G ++ A+ + ++ + SH
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVA-LGYRSVQQVIESH 157
Score = 146 bits (371), Expect = 1e-40
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E +N D E T L WAA + +I ++++ + GA +G + + L A +G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGY 81
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
D V +L+ G D D G T + A H + V L+ G + ++ +G ++
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDK 677
+ +++ + K
Sbjct: 142 AVALG-YRSVQQVIESHLLKLLQNIK 166
Score = 134 bits (341), Expect = 1e-36
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
I Q +++ + TPL WA G + V L+Q+GADP L+ + + A
Sbjct: 20 ATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G+T IV L+ G++VN D NG T L+++ + + ++L+ GA TI+ G
Sbjct: 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETD-SGY 136
Query: 122 VALHWAIYAKNHVAIT-TLVSH 142
++ A+ + ++ + SH
Sbjct: 137 NSMDLAVA-LGYRSVQQVIESH 157
Score = 127 bits (323), Expect = 3e-34
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+H QG + + I+ D EG T + AA G +V +L+ G + L
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ +AL + K D ++L+ G D +G L +A++ NHV L
Sbjct: 65 LGKGRESALSLACSK-GYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVH-GNHVKCVKML 121
Query: 140 VSHTSSLEIPNAQGLTPFML 159
+ + I G L
Sbjct: 122 LESGADPTIETDSGYNSMDL 141
Score = 92.5 bits (231), Expect = 6e-22
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + G V+ + TPL +A H+ V +L++ GADPT+ G + A
Sbjct: 86 KMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 62 FGHTRIVAYLVAKGINVNLQDR 83
G+ + + + + + +
Sbjct: 145 LGYRSVQQVIESHLLKLLQNIK 166
Score = 87.1 bits (217), Expect = 5e-20
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
S +HQ A G +A + + +N D G T LMW+A + L+ GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ K AL A K + I L+ + + G TP +
Sbjct: 62 PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Score = 87.1 bits (217), Expect = 5e-20
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
S +HQ A G +A + + +N D G T LMW+A + L+ GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
+ K AL A K + I L+ + + G TP +
Sbjct: 62 PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Score = 47.8 bits (115), Expect = 2e-06
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 84 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
++ A + + I D+ G L WA +A+ L+ +
Sbjct: 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58
Query: 143 TSSLEIPNAQGLTPFML 159
+ ++ + L
Sbjct: 59 GADPQLLGKGRESALSL 75
Score = 47.8 bits (115), Expect = 2e-06
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
++ A + + I D+ G L WA +A+ L+ +
Sbjct: 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58
Query: 703 TSSLEIPNAQGLTPFML 719
+ ++ + L
Sbjct: 59 GADPQLLGKGRESALSL 75
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 158 bits (401), Expect = 2e-43
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G VN ++ V+ LH A + + +K + GA V+ + D TPL A G
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSG 136
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
D V LL+QHGA +S+ ++ IH+AA+ GH V L+A G N++ + + T L
Sbjct: 137 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
+ + L+ GA + + LH + + L+ + +
Sbjct: 196 LACENQ-QRACVKKLLESGAD--VNQGKGQDSPLHAVVR-TASEELACLLMDFGADTQAK 251
Query: 710 NAQGLTPFML 719
NA+G P L
Sbjct: 252 NAEGKRPVEL 261
Score = 156 bits (398), Expect = 8e-43
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G VN ++ T L A ++ + + + GA V A+P+H A R+GH
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 169
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
++ V LI +G + S T ++ A + V L+ G +VN Q + + L
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
S + LL+ FGA T ++ G + ++ +A L
Sbjct: 229 VVRTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLAQLFLERE 276
Score = 146 bits (372), Expect = 2e-39
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 8/190 (4%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
V G + D + + R +S + DA+ +P+H A G
Sbjct: 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD---WSPMHEAAIHG 70
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
H S+ LI G ++ ++ + +H+A GH V L+ G VN + T L
Sbjct: 71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF 130
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
+ S D LL+ GAS +Q + +H A + HV +L+++ +++
Sbjct: 131 NACVSG-SWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHK 186
Query: 710 NAQGLTPFML 719
+ TP L
Sbjct: 187 ISHLGTPLYL 196
Score = 132 bits (334), Expect = 2e-34
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
+S + DA+ +P+H A GH S+ LI G ++ ++ + +H+A GH
Sbjct: 48 LSNPLMGDAVSD---WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104
Query: 65 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124
V L+ G VN + T L + S D LL+ GAS +Q + +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNLLLQHGAS--VQPESDLASPI 161
Query: 125 HWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
H A + HV +L+++ +++ + TP L
Sbjct: 162 HEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Score = 127 bits (321), Expect = 1e-32
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + GA V+ + D TPL A G D V LL+QHGA +S+ ++ IH+AA
Sbjct: 108 VKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAA 165
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ GH V L+A G N++ + + T L + + L+ GA +
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ-QRACVKKLLESGAD--VNQGKGQ 222
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ LH + + L+ + + NA+G P L
Sbjct: 223 DSPLHAVVR-TASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 125 bits (317), Expect = 4e-32
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA V A+P+H A R+GH++ V LI +G + S T ++ A +
Sbjct: 142 NLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 199
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
V L+ G +VN Q + + L S + LL+ FGA T ++ G
Sbjct: 200 NQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA-SEELACLLMDFGADTQAKNA-EGK 256
Query: 122 VALHWAIYAKNHVAITTLVSH 142
+ ++ +A L
Sbjct: 257 RPVELVPP-ESPLAQLFLERE 276
Score = 120 bits (303), Expect = 3e-30
Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTL 607
+ ++ + +G+ + ++ G + P G L+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
+ + +H+AA GH + L+++G VN+ + ++ L + L ++L+
Sbjct: 57 VS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLK 113
Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
GA + L A L+ H +S++ + +P
Sbjct: 114 HGAQVNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163
Score = 114 bits (288), Expect = 3e-28
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G +++ S T L+ A N + +K + GA V+ G Q +PLH R
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTAS 234
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
+ LL+ GAD ++EG + +L +G ++
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281
Score = 106 bits (268), Expect = 1e-25
Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 16/164 (9%)
Query: 1 MKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI 56
+ +G+ + ++ G + P G L+ + + + +
Sbjct: 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVS--DWSPM 63
Query: 57 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
H+AA GH + L+++G VN+ + ++ L + L ++L+ GA
Sbjct: 64 HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGVT 122
Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ L A L+ H +S++ + +P
Sbjct: 123 A-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163
Score = 84.1 bits (209), Expect = 6e-18
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSE-----GSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+ H L+ G+ MD + GS G L++ + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD- 55
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ + + +A R LI+ G + I LH A H++ L
Sbjct: 56 -AVSDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-DHVSPLHEACL-GGHLSCVKIL 111
Query: 140 VSHTSSLEIPNAQGLTP 156
+ H + + A TP
Sbjct: 112 LKHGAQVNGVTADWHTP 128
Score = 83.7 bits (208), Expect = 9e-18
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + GA V+ G Q +PLH R + LL+ GAD ++EG +
Sbjct: 207 KKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264
Query: 62 FGHTRIVAYLVAKGINVN 79
+L +G ++
Sbjct: 265 ESPL-AQLFLEREGASLP 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 156 bits (396), Expect = 4e-43
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 10/195 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
F + G++++ ++ T LH A I +++ ++ GA A+ Q T H A
Sbjct: 32 FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHR 90
Query: 591 HLDSVVLLIQHGADPTL----MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-G 645
+ L+ A TL + +G T +H A V L+ +G +++ D G
Sbjct: 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG 150
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTS 704
+ L+ + SL +LL+ GA+ Q G+ ALH A + + + TLV +
Sbjct: 151 RSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASG-RGLLPLVRTLVRSGA 207
Query: 705 SLEIPNAQGLTPFML 719
+ N TP M+
Sbjct: 208 DSSLKNCHNDTPLMV 222
Score = 149 bits (380), Expect = 5e-41
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 10/177 (5%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI----VDAIGGDLQATPLHWAT 587
V AG D T H A + ++ + A ++A D T LH A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAV 124
Query: 588 RQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
++V LL++ GAD +D + G + + A + +V L+ G NVN Q +G
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+AL ++ + L R L+ GA +++++ H + L A + + I +
Sbjct: 185 SALHSASGR-GLLPLVRTLVRSGADSSLKNC-HNDTPLMVARS-RRVIDILRGKATR 238
Score = 148 bits (377), Expect = 1e-40
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 12/188 (6%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDAIGGDLQATPLHWATRQGHLD 593
D + T LH A + + + ++ G +D Q TPLH A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS 60
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG----INVNLQDRNGMTAL 649
V LL+ GA P +D G T H A + + L+ +++ ++ +G+TAL
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 708
+ + +LL+ GA D G L A+ N +++ L+ H +++
Sbjct: 121 HVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNA 178
Query: 709 PNAQGLTP 716
G +
Sbjct: 179 QMYSGSSA 186
Score = 141 bits (359), Expect = 4e-38
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
D+ + + +T LH A E ++ + +GA +DA+ +PL A L
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
V LL+QHGA+ GS+ +H A+ G +V LV G + +L++ + T LM +
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 653 AYKVFSLDPTRLLITFGAS 671
+ +D R T AS
Sbjct: 224 RSR-RVIDILRGKATRPAS 241
Score = 125 bits (317), Expect = 1e-32
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 3 YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF 62
F G +D Q TPLH A V LL+ GA P +D G T H A +
Sbjct: 31 LFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89
Query: 63 GHTRIVAYLVAKG----INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
+ L+ +++ ++ +G+TAL + + +LL+ GA D
Sbjct: 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIK 148
Query: 119 HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
G L A+ N +++ L+ H +++ G +
Sbjct: 149 SGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSA 186
Score = 125 bits (317), Expect = 1e-32
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSEGSTCIH 57
+ ++ GA A+ Q T H A + L+ A TL + +G T +H
Sbjct: 63 RLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 58 QAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
A V L+ +G +++ D G + L+ + SL +LL+ GA+ Q
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQM 180
Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
G+ ALH A + + + TLV + + N TP M+
Sbjct: 181 Y-SGSSALHSASG-RGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 119 bits (301), Expect = 2e-30
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 2 KYFISQGAI----VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCI 56
+ + A ++A D T LH A ++V LL++ GAD +D + G + +
Sbjct: 96 RALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 57 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
A + +V L+ G NVN Q +G +AL ++ + L R L+ GA +++++
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSSLKN 213
Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSH 142
H + L A + + I +
Sbjct: 214 C-HNDTPLMVARS-RRVIDILRGKATR 238
Score = 112 bits (283), Expect = 5e-28
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + +GA +DA+ +PL A L V LL+QHGA+ GS+ +H A+
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G +V LV G + +L++ + T LM + + +D R T AS
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDILRGKATRPAS 241
Score = 111 bits (281), Expect = 1e-27
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 21 TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
TPLH A QG+L +V L+ Q G + + ++ T +H A +V LV G
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT----IQDKIHGNVALHWAIYAKN 132
+ DR+G TA + S R L+ A T ++ G ALH A+
Sbjct: 71 SPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVN-TE 127
Query: 133 HVAIT-TLVSHTSSLEIPNAQ-GLTPFML 159
L+ + ++ + + G +P +
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIH 156
Score = 80.2 bits (199), Expect = 7e-17
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
D +G T +H A G+ V LV G +++ + T L + RL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRL 64
Query: 105 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH----TSSLEIPNAQGLTPFML 159
L+T GAS D+ HG A H A L+ T LE N GLT +
Sbjct: 65 LVTAGASPMALDR-HGQTAAHLACE-HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Score = 47.1 bits (113), Expect = 9e-06
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
V +G D + + T L A I+I++ ++ A
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 46.3 bits (111), Expect = 2e-05
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 78 VNLQDRNGMTALMWSAYKVFSLDPTRLLITF----GASTTIQDKIHGNVALHWAIYAKNH 133
D +G T L + + +L L+ G I + LH A+
Sbjct: 2 ATRADEDGDTPLHIAVVQG-NLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVI-TTL 58
Query: 134 VAIT-TLVSHTSSLEIPNAQGLTPFML 159
++ LV+ +S + G T L
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTAAHL 85
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 154 bits (393), Expect = 5e-43
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 6/173 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
+EA D N D+ T LH A + + + I A +DA D TPL A R
Sbjct: 45 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 103
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ LI AD +D G + +H AA + L+ G N ++Q+ T L
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
+A + S + ++L+ A+ I D + A + H I L +
Sbjct: 164 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDEY 213
Score = 146 bits (370), Expect = 8e-40
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 7/192 (3%)
Query: 531 FVEAGQDV-NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
F+ G + N+ D T LH AA +R + K + A + + TPLH A
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSA 68
Query: 590 GHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
+LI++ A D +G+T + AA+ ++ L+ +VN D G +A
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 707
L W+A ++D +L+ GA+ +Q+ L A + L+ H ++ +
Sbjct: 129 LHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAR-EGSYETAKVLLDHFANRD 185
Query: 708 IPNAQGLTPFML 719
I + P +
Sbjct: 186 ITDHMDRLPRDI 197
Score = 132 bits (334), Expect = 6e-35
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 556 NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 615
+ ++ FI QGA + T LH A R D+ L++ AD + D+ G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 616 IHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 674
+H A + L+ +++ + +G T L+ +A LI A
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNA 120
Query: 675 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
D G ALHWA N+V L+ + ++ ++ N + TP L
Sbjct: 121 VDD-LGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 125 bits (318), Expect = 6e-33
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67
Query: 62 FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ L+ +++ + +G T L+ +A LI A D G
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LG 125
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
ALHWA N+V L+ + ++ ++ N + TP L
Sbjct: 126 KSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 122 bits (310), Expect = 8e-32
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 2 KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ I A +DA D TPL A R + LI AD +D G + +H AA
Sbjct: 75 QILIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ L+ G N ++Q+ T L +A + S + ++L+ A+ I D
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDITDH-MD 191
Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
+ A + H I L +
Sbjct: 192 RLPRDIAQE-RMHHDIVRLLDEY 213
Score = 112 bits (282), Expect = 4e-28
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ + DVN D + LHWAA N ++ + GA D + TPL A R+G
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 170
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
++ +L+ H A+ + D A + H IV L + +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 91.3 bits (228), Expect = 6e-21
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 6/133 (4%)
Query: 30 GHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 88
+ I GA D G T +H AA++ + L+ + N+QD G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 89 LMWSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSL 146
L + + ++LI A+ + G L A + L++ + +
Sbjct: 62 LHAAVSAD-AQGVFQILIRNRATDLDARMH-DGTTPLILAAR-LAVEGMLEDLINSHADV 118
Query: 147 EIPNAQGLTPFML 159
+ G +
Sbjct: 119 NAVDDLGKSALHW 131
Score = 79.4 bits (197), Expect = 1e-16
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA D + TPL A R+G ++ +L+ H A+ + D A +
Sbjct: 142 VVLLKNGANKDMQNNREE-TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200
Query: 62 FGHTRIVAYLVAKGINVN 79
H IV L + +
Sbjct: 201 RMHHDIVRLLDEYNLVRS 218
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 153 bits (390), Expect = 8e-43
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 10/179 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ V+E D+E T L+ A NN IEI K I +GA ++ +P +A QG
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQG 83
Query: 591 HLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVNLQDRNGMTA 648
+ + +++H D + G + AA+ GH V L+ G +++ Q+ G TA
Sbjct: 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143
Query: 649 LMWSAYKVFS----LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
L+ + D +LL+ GA +I+D G A+ +A K + I+ L +
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYANQ-KGYTEISKILAQY 200
Score = 147 bits (373), Expect = 1e-40
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 10/180 (5%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
LL A + ++ + VD + + TPL+ A ++ LI GAD
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLL 665
L +S + A G T I+AY++ ++N +R G AL+ +A K +D +LL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLL 125
Query: 666 ITFG-ASTTIQDKIHGNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
+ G Q+ G AL A+ + + I L+ + + I + G T
Sbjct: 126 LEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Score = 124 bits (314), Expect = 1e-32
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 10/165 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ VD + + TPL+ A ++ LI GAD L +S + A
Sbjct: 23 EILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81
Query: 62 FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIH 119
G T I+AY++ ++N +R G AL+ +A K +D +LL+ G Q+
Sbjct: 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLLLEDGREDIDFQND-F 139
Query: 120 GNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
G AL A+ + + I L+ + + I + G T
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Score = 113 bits (285), Expect = 9e-29
Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 6/142 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
L A ++ +L +D+EG+T ++ A I L+ +G ++NL
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS-TTIQDKIHGNVALHWAIYAKNHVAIT-T 138
Q+ + +++ + + ++ ++ +G AL A K H+
Sbjct: 68 QNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNR-YGGNALIPAAE-KGHIDNVKL 124
Query: 139 LVSHTSS-LEIPNAQGLTPFML 159
L+ ++ N G T +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIE 146
Score = 95.6 bits (239), Expect = 1e-22
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 2 KYFISQGA----IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCI 56
Y + + GG L A +GH+D+V LL++ G D + G T +
Sbjct: 89 AYMLKHATPDLNKHNRYGG----NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144
Query: 57 HQAAQF-----GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
+A + IV L+ G + +++D +G TA+ ++ K + +++L
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK-GYTEISKILA 198
Score = 82.9 bits (206), Expect = 3e-18
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
E + A Q ++ L V+ D G T L + + ++ + LI
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
GA +Q+ + +A + I ++ H T L N G +
Sbjct: 62 GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Score = 82.9 bits (206), Expect = 3e-18
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
E + A Q ++ L V+ D G T L + + ++ + LI
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61
Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 719
GA +Q+ + +A + I ++ H T L N G +
Sbjct: 62 GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Score = 49.0 bits (118), Expect = 1e-06
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
++ L + + + +L D GN L+ A++ N + I
Sbjct: 1 MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
L+ + + + N+ +P++
Sbjct: 58 LIDRGADINLQNSISDSPYLY 78
Score = 49.0 bits (118), Expect = 1e-06
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 640 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 698
++ L + + + +L D GN L+ A++ N + I
Sbjct: 1 MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57
Query: 699 LVSHTSSLEIPNAQGLTPFML 719
L+ + + + N+ +P++
Sbjct: 58 LIDRGADINLQNSISDSPYLY 78
Score = 45.5 bits (109), Expect = 2e-05
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 41
K + GA + T + +A ++G+ + +L Q+
Sbjct: 162 KLLMENGADQSIKDNSGR-TAMDYANQKGYTEISKILAQY 200
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 154 bits (392), Expect = 1e-42
Identities = 53/201 (26%), Positives = 74/201 (36%), Gaps = 12/201 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+N ++ T LH A I N+ EI + + G + TPLH A QG
Sbjct: 31 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQG 89
Query: 591 HLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-R 643
L SV +L Q P L + G TC+H A+ G+ IV LV+ G +VN Q+
Sbjct: 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149
Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
NG TAL + + D LL+ GA G + I L
Sbjct: 150 NGRTALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWG-RPSTRIQQQLGQL 206
Query: 703 TSSLEIPNAQGLTPFMLLEEN 723
T + E+
Sbjct: 207 TLENLQMLPESEDEESYDTES 227
Score = 153 bits (390), Expect = 2e-42
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 547 TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 602
+ LH A I+ +E+++ A ++ Q TPLH A + L+ G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAG 68
Query: 603 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKV 656
DP L D G+T +H A + G V L + + NG T L ++
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 715
L LL++ GA Q+ +G ALH A+ + + L+ + + QG +
Sbjct: 129 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 716 PFML 719
P+ L
Sbjct: 187 PYQL 190
Score = 134 bits (341), Expect = 8e-36
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ A ++ Q TPLH A + L+ G DP L D G+T +H A +
Sbjct: 29 RQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
Query: 62 FGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
G V L + + NG T L ++ L LL++ GA Q
Sbjct: 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQ 146
Query: 116 DKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ +G ALH A+ + + L+ + + QG +P+ L
Sbjct: 147 EPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 123 bits (312), Expect = 6e-32
Identities = 44/170 (25%), Positives = 61/170 (35%), Gaps = 12/170 (7%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTC 55
+ + G + TPLH A QG L SV +L Q P L + G TC
Sbjct: 62 EALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 56 IHQAAQFGHTRIVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTI 114
+H A+ G+ IV LV+ G +VN Q+ NG TAL + + D LL+ GA
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNR 179
Query: 115 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
G + I L T + E+
Sbjct: 180 VTY-QGYSPYQLTWG-RPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227
Score = 106 bits (267), Expect = 5e-26
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 21 TPLHWATRQGH----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
+ LH A ++ + + A ++ T +H A I L+ G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI-----HGNVALHWAIYAK 131
+ L+D G T L + + L +L + + + +G+ LH A
Sbjct: 70 DPELRDFRGNTPLHLACEQG-CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-H 127
Query: 132 NHVAIT-TLVSH 142
++ I LVS
Sbjct: 128 GYLGIVELLVSL 139
Score = 95.7 bits (239), Expect = 3e-22
Identities = 21/93 (22%), Positives = 33/93 (35%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ +S GA V+A T LH A + D V LL++ GAD + +G +
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93
TRI L + +
Sbjct: 193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225
Score = 91.8 bits (229), Expect = 6e-21
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
V G DVN + T LH A +++ + GA V+ + +P +
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRP 195
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
L Q + M E + T
Sbjct: 196 STRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 82.2 bits (204), Expect = 1e-17
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 49 DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
+G + +H A ++ + +N Q+ T L + +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63
Query: 105 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 156
L+ G ++D GN LH A + +A L S L+ N G T
Sbjct: 64 LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Score = 82.2 bits (204), Expect = 1e-17
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)
Query: 609 DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 664
+G + +H A ++ + +N Q+ T L + +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63
Query: 665 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 716
L+ G ++D GN LH A + +A L S L+ N G T
Sbjct: 64 LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Score = 63.3 bits (155), Expect = 3e-11
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA V+ + +P + L Q + M E +
Sbjct: 168 SLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226
Query: 62 FGHTRIV 68
T
Sbjct: 227 SEFTEFT 233
Score = 49.1 bits (118), Expect = 2e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 81 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 137
+G + L + K +++ R + A Q+ LH A+ N I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61
Query: 138 -TLVSHTSSLEIPNAQGLTPFML 159
L+ E+ + +G TP L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHL 84
Score = 49.1 bits (118), Expect = 2e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 641 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 697
+G + L + K +++ R + A Q+ LH A+ N I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61
Query: 698 -TLVSHTSSLEIPNAQGLTPFML 719
L+ E+ + +G TP L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHL 84
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 154 bits (392), Expect = 1e-42
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 19/216 (8%)
Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 600
P+ L N + I+ G V L L ++ +G D V +I
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 601 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 660
DP+L + EG T +H A GHT IV +LV G+NVN D +G T L +A ++
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQ 117
Query: 661 PTRLLITFGASTTIQDK--IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPF 717
+ L+ GA+ + + + + + L + I N +
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA- 175
Query: 718 MLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHR 753
L EL IIHR
Sbjct: 176 -----------LWDYEPQNDDELPMKEGDCMTIIHR 200
Score = 141 bits (359), Expect = 3e-38
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ D + P+ E +T LH A EI+K+ + G V+A D TPLH A +
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNN 115
Query: 592 LDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
+ L++ GA T D + + + + G+T+ +L + + ++ + A
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYA 175
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN-VALHWA 687
L + + L + G TI + + + WA
Sbjct: 176 LWDYEPQ----NDDELPMKEGDCMTIIHREDEDEIEWWWA 211
Score = 130 bits (330), Expect = 3e-34
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 19/195 (9%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
I+ G V L L ++ +G D V +I DP+L + EG T +H A
Sbjct: 22 SERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK--IH 119
GHT IV +LV G+NVN D +G T L +A ++ + L+ GA+ +
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 120 GNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT 178
+ + + + L + I N + L
Sbjct: 139 TAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA------------LWDYEPQNDD 185
Query: 179 ELKDHYNTQQNIIHR 193
EL IIHR
Sbjct: 186 ELPMKEGDCMTIIHR 200
Score = 115 bits (290), Expect = 4e-29
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
L R + I HG + + ++ G +V ++ + + +L
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ G+TAL + + + L+ FG + D G LH A N+V + L
Sbjct: 66 PNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAAS-CNNVQVCKFL 122
Query: 140 VSH 142
V
Sbjct: 123 VES 125
Score = 109 bits (275), Expect = 5e-27
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP---TLMDSEGSTCIH 57
+K+ + G V+A D TPLH A ++ L++ GA T D + +
Sbjct: 86 VKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144
Query: 58 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
+ + G+T+ +L + + ++ + AL + + L + G TI +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ----NDDELPMKEGDCMTIIHR 200
Query: 118 IHGN-VALHWA 127
+ + WA
Sbjct: 201 EDEDEIEWWWA 211
Score = 105 bits (265), Expect = 1e-25
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATRQ 589
V+ G +VN DS+ T LH AA N +++ K+ + GA V A+ A +
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
G+ L +M+ + + + + ++
Sbjct: 150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL-PMKEGDCMTIIHREDEDEIEW 208
Query: 650 MWSA 653
W+
Sbjct: 209 WWAR 212
Score = 79.6 bits (197), Expect = 1e-16
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
+ G + + + + +A G+ V + L+ S+ + D + +I
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEG-EFDLVQRIIYE 59
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
++ + G ALH A+ H I LV ++ ++ G TP
Sbjct: 60 VDDPSLPND-EGITALHNAVC-AGHTEIVKFLVQFGVNVNAADSDGWTPLHC 109
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 158 bits (401), Expect = 2e-42
Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 6/181 (3%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
+ L AA N ++M A G TPLH A
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAG 67
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
+ V LL+QHGAD D G +H A +GH + L+ G VN D T
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLE 707
L +A K ++ LL++ GA T+ + HG A+ A T S L+
Sbjct: 128 LHEAASK-NRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPT-PELRERLTYEFKGHSLLQ 184
Query: 708 I 708
Sbjct: 185 A 185
Score = 136 bits (346), Expect = 3e-35
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 15/166 (9%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWA 586
+ + + T LH A + R ++ + + +GA V+ D TPLH A
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVA 254
Query: 587 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
+ H D + +L +HGA +DS G T +H+AA GH + L++ G + ++ G
Sbjct: 255 AERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314
Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 692
TA V + +++ D + L A +K
Sbjct: 315 TAAQMGNEAV------QQILSESTPMRTSDV---DYRLLEA--SKA 349
Score = 136 bits (344), Expect = 5e-35
Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 5/149 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
M A G TPLH A + V LL+QHGAD D G +H A
Sbjct: 41 MALLTPLNVNCHASDGRKS-TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+GH + L+ G VN D T L +A K ++ LL++ GA T+ + HG
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVNC-HG 157
Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEI 148
A+ A T S L+
Sbjct: 158 KSAVDMAPT-PELRERLTYEFKGHSLLQA 185
Score = 131 bits (333), Expect = 2e-33
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 20/197 (10%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G D + + + A E + Y + L A R+
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------------LLQAAREAD 190
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTA 648
L V + T +H A H + + L+ KG NVN ++++ MT
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250
Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 707
L +A + D +L GA D G ALH A H+ L+S+ S
Sbjct: 251 LHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPS 307
Query: 708 IPNAQGLTPFMLLEENI 724
I + QG T + E +
Sbjct: 308 IISLQGFTAAQMGNEAV 324
Score = 130 bits (330), Expect = 4e-33
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 6/163 (3%)
Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIH 617
+ A G + + L A R G+ + ++ LL + D ST +H
Sbjct: 5 KSALDLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63
Query: 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
AA + RIV L+ G +V+ +D+ G+ L + + T LL+ GA D
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL 122
Query: 678 IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
LH A KN V + L+SH + + N G + +
Sbjct: 123 -WQFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 129 bits (326), Expect = 1e-32
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQF 62
A G + + L A R G+ + ++ LL + D ST +H AA +
Sbjct: 10 LADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY 68
Query: 63 GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
RIV L+ G +V+ +D+ G+ L + + T LL+ GA D
Sbjct: 69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL-WQFT 126
Query: 123 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A KN V + L+SH + + N G + +
Sbjct: 127 PLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 116 bits (292), Expect = 3e-28
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ + +GA V+ D TPLH A + H D + +L +HGA +DS G T +H+AA
Sbjct: 230 AELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
GH + L++ G + ++ G TA V + +++ D
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV------QQILSESTPMRTSDV--- 339
Query: 121 NVALHWAIYAKN 132
+ L A +K
Sbjct: 340 DYRLLEA--SKA 349
Score = 114 bits (289), Expect = 7e-28
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS--VV-LLIQHGADPTLMDSEGSTCIH 57
+K ++ I + T LH A H V LL++ GA+ + + T +H
Sbjct: 194 VKKTLALEIINFKQPQSHE-TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH 252
Query: 58 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
AA+ H ++ L G +N D G TAL +A L RLL+++G+ +I
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA-GHLQTCRLLLSYGSDPSIISL 311
Query: 118 IHGNVALHWAIYAKNHVAITTLVSH 142
G A + A+ ++S
Sbjct: 312 -QGFTAAQMG-----NEAVQQILSE 330
Score = 111 bits (280), Expect = 1e-26
Identities = 39/189 (20%), Positives = 62/189 (32%), Gaps = 29/189 (15%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGH---------------------LDSVVLLI 39
+S GA + + + + A L V +
Sbjct: 140 CSLLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Query: 40 QHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
T +H A H + + L+ KG NVN ++++ MT L +A +
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER- 257
Query: 97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 155
D +L GA D G ALH A H+ L+S+ S I + QG T
Sbjct: 258 AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPSIISLQGFT 315
Query: 156 PFMLLEENI 164
+ E +
Sbjct: 316 AAQMGNEAV 324
Score = 95.3 bits (238), Expect = 3e-21
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 35 VVLLIQHGADPTLMDSEGSTCIHQAAQFGH-TRIVAYLVAKGINVNLQDRNGMTALMWSA 93
+ L A L + +AA+ G+ +++A L +N + D T L +A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 94 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQ 152
+ +LL+ GA +DK G V LH A H +T L+ H + + +
Sbjct: 67 GY-NRVRIVQLLLQHGADVHAKDK-GGLVPLHNACS-YGHYEVTELLLKHGACVNAMDLW 123
Query: 153 GLTPFML 159
TP
Sbjct: 124 QFTPLHE 130
Score = 60.6 bits (148), Expect = 7e-10
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
+FG + L L L+ +A LL + D
Sbjct: 1 GEFGKS--ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-R 57
Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ LH A N V I L+ H + + + GL P
Sbjct: 58 KSTPLHLAAG-YNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Score = 45.9 bits (110), Expect = 4e-05
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G D + + T E ++ +S+ + D L A++ G
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAG 350
Score = 30.9 bits (71), Expect = 1.9
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQG 30
+ +S+ + D L A++ G
Sbjct: 325 QQILSESTPMRTSDVD---YRLLEASKAG 350
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 154 bits (392), Expect = 2e-42
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
+EA D N D+ T LH A + + + I A +DA D TPL A R
Sbjct: 77 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 135
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ LI AD +D G + +H AA + L+ G N ++Q+ T L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
+A + S + ++L+ A+ I D + A + H I L
Sbjct: 196 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDLE 245
Score = 151 bits (385), Expect = 2e-41
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)
Query: 537 DVNEPDSETVTLLHWAAIN-------------NRIEIMKYFISQGAIVDAIGGDLQATPL 583
DVN + T L A+ + + ++ FI QGA + T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 584 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQD 642
H A R D+ L++ AD + D+ G T +H A + L+ +++ +
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 643 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS 701
+G T L+ +A LI A D G ALHWA N+V L+
Sbjct: 122 HDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LGKSALHWAAA-VNNVDAAVVLLK 178
Query: 702 HTSSLEIPNAQGLTPFML 719
+ ++ ++ N + TP L
Sbjct: 179 NGANKDMQNNREETPLFL 196
Score = 135 bits (343), Expect = 6e-36
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
D++ + T L AA +++ I+ A V+A+ + + LHWA ++D+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDA 172
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
V+L+++GA+ + ++ T + AA+ G L+ N ++ D +
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 655 KVFSLDPTRLLITFGA 670
+ D RLL
Sbjct: 233 R-MHHDIVRLLDLEHH 247
Score = 131 bits (332), Expect = 2e-34
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 5/161 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ FI QGA + T LH A R D+ L++ AD + D+ G T +H A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 61 QFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
+ L+ +++ + +G T L+ +A LI A D
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-L 156
Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
G ALHWA N+V L+ + ++ ++ N + TP L
Sbjct: 157 GKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 122 bits (310), Expect = 2e-31
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Query: 2 KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ I A +DA D TPL A R + LI AD +D G + +H AA
Sbjct: 107 QILIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ L+ G N ++Q+ T L +A + S + ++L+ A+ I D
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDITDH-MD 223
Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
+ A + H I L
Sbjct: 224 RLPRDIAQE-RMHHDIVRLLDLE 245
Score = 112 bits (284), Expect = 5e-28
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ + DVN D + LHWAA N ++ + GA D + TPL A R+G
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 202
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
++ +L+ H A+ + D A + H IV L + + +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 107 bits (271), Expect = 3e-26
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ I+ A V+A+ + + LHWA ++D+ V+L+++GA+ + ++ T + AA+
Sbjct: 141 EDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
G L+ N ++ D + + D RLL
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQER-MHHDIVRLLDLEHH 247
Score = 99.8 bits (250), Expect = 1e-23
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 21 TPLHWATRQG-------------HLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTR 66
TPL A+ G + I GA D G T +H AA++ +
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 67 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALH 125
L+ + N+QD G T L + + ++LI A+ + G L
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMH-DGTTPLI 129
Query: 126 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
A + L++ + + + G +
Sbjct: 130 LAAR-LAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Score = 80.2 bits (199), Expect = 8e-17
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA D + TPL A R+G ++ +L+ H A+ + D A +
Sbjct: 174 VVLLKNGANKDMQNNREE-TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 62 FGHTRIVAYLVAKGINVN 79
H IV L + + +
Sbjct: 233 RMHHDIVRLLDLEHHHHH 250
Score = 67.1 bits (165), Expect = 2e-12
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 49 DSEGSTCIHQAAQFG-------------HTRIVAYLVAKGINV-NLQDRNGMTALMWSAY 94
+G T + A+ G +++ + +G ++ N DR G TAL +A
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 95 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQ 152
D + L+ A IQD G LH A+ + + L+ + + L+
Sbjct: 67 YS-RSDAAKRLLEASADANIQDN-MGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHD 123
Query: 153 GLTPFML 159
G TP +L
Sbjct: 124 GTTPLIL 130
Score = 53.2 bits (129), Expect = 8e-08
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 76 INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 123
++VN++ +G T LM ++ + I GAS Q G A
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LH A + L+ ++ I + G TP
Sbjct: 61 LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Score = 53.2 bits (129), Expect = 8e-08
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 636 INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 683
++VN++ +G T LM ++ + I GAS Q G A
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 684 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
LH A + L+ ++ I + G TP
Sbjct: 61 LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 151 bits (385), Expect = 3e-42
Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 5/166 (3%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
N DS T L A + + + ++ + T L WA + L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEK 86
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
L+ G++ D G T + + FG++ + +L+ G NVN ++ G T L+ ++
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG- 145
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
+ + L+ GA + +D G A A +
Sbjct: 146 RSEIVKKLLELGADISARDL-TGLTAEASARI-FGRQEVIKIFTEV 189
Score = 136 bits (345), Expect = 7e-37
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
VE + + D E T L WA NNR+ I + +S+G+ V+ + TPL W+ G
Sbjct: 54 LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFG 112
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ + L++HGA+ + EG T + A+++G + IV L+ G +++ +D G+TA
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Query: 651 WSAYKVFSLDPTRLLI 666
+ + ++
Sbjct: 173 SARIF-GRQEVIKIFT 187
Score = 125 bits (318), Expect = 3e-33
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 5/142 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ + T L WA + L L+ G++ D G T + +
Sbjct: 52 DKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
FG++ + +L+ G NVN ++ G T L+ ++ + + L+ GA + +D G
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL-TGL 168
Query: 122 VALHWAIYAKNHVAITT-LVSH 142
A A +
Sbjct: 169 TAEASARI-FGRQEVIKIFTEV 189
Score = 123 bits (311), Expect = 2e-32
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)
Query: 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
+ D + + + + + + D+ TPL A G +++ L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---DSYN----RTPLMVACMLGMENAIDKL 54
Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 658
+++ D EGST + A + I L++KG NVN +D +G T LMWS
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG-Y 113
Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
+ + L+ GA+ ++ G L A I L+ + + + GLT
Sbjct: 114 SEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKLLELGADISARDLTGLTAE 171
Query: 718 ML 719
Sbjct: 172 AS 173
Score = 116 bits (294), Expect = 5e-30
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPL A G +++ L+++ D EGST + A + I L++KG NVN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+D +G T LMWS + + L+ GA+ ++ G L A I L
Sbjct: 97 KDFSGKTPLMWSIIFG-YSEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKL 153
Query: 140 VSHTSSLEIPNAQGLTPFML 159
+ + + + GLT
Sbjct: 154 LELGADISARDLTGLTAEAS 173
Score = 96.3 bits (241), Expect = 7e-23
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
G+ +D + + + ++ L + DS T + A G
Sbjct: 1 GSHMD---KNGE-IVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENA 50
Query: 68 VAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 127
+ LV + +D G TAL+W+ L L++ G++ +D G L W+
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTKDF-SGKTPLMWS 108
Query: 128 IYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
I + ++ L+ H +++ N +G TP ++
Sbjct: 109 II-FGYSEMSYFLLEHGANVNDRNLEGETPLIV 140
Score = 75.1 bits (186), Expect = 1e-15
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E G +VN+ + E T L A+ R EI+K + GA + A T A G
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGR 179
Query: 592 LDSVVLLIQHGA 603
+ + + +
Sbjct: 180 QEVIKIFTEVRR 191
Score = 43.9 bits (105), Expect = 6e-05
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
K + GA + A T A G + + + +
Sbjct: 151 KKLLELGADISARDLTGL-TAEASARIFGRQEVIKIFTEVRR 191
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 150 bits (382), Expect = 3e-42
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
G D+ + L AA R + ++ ++ GA V+A TPLH A GHL
Sbjct: 9 HHGSDLGKK-------LLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
+ V +L+++GAD +D G T + AA FGH IV L+ G +VN D G T L +
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 653 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
A L+ +L+ GA QDK G A +I + + L
Sbjct: 121 AMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISID-NGNEDLAEILQKL 168
Score = 137 bits (347), Expect = 2e-37
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G DVN D+ T LH AA N +EI++ + GA V+A+ TPL A GH
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGH 92
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
L+ V +L+++GAD D EG T +H AA FGH IV L+ G +VN QD+ G TA
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 652 SAYKVFSLDPTRLLI 666
S + D +L
Sbjct: 153 SIDN-GNEDLAEILQ 166
Score = 128 bits (325), Expect = 2e-34
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ GA V+A TPLH A GHL+ V +L+++GAD +D G T + AA
Sbjct: 31 RILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
FGH IV L+ G +VN D G T L +A L+ +L+ GA QDK G
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK-FGK 147
Query: 122 VALHWAIYAKNHVAIT-TLVSH 142
A +I + + L
Sbjct: 148 TAFDISID-NGNEDLAEILQKL 168
Score = 119 bits (301), Expect = 3e-31
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 7 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 66
+G+ G L A R G D V +L+ +GAD D+ G T +H AA GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 67 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
IV L+ G +VN D GMT L +A L+ +L+ GA D G+ LH
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119
Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
A H+ I L+ + + + + G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 119 bits (301), Expect = 3e-31
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
+G+ G L A R G D V +L+ +GAD D+ G T +H AA GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
IV L+ G +VN D GMT L +A L+ +L+ GA D G+ LH
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119
Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
A H+ I L+ + + + + G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 106 bits (267), Expect = 1e-26
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + GA V+A+ TPL A GHL+ V +L+++GAD D EG T +H AA
Sbjct: 63 VEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
FGH IV L+ G +VN QD+ G TA S + D +L
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN-GNEDLAEILQ 166
Score = 41.2 bits (98), Expect = 4e-04
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
++ G DVN D T + N ++ +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 154 bits (391), Expect = 9e-42
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G D+N + + +T LH A I++ ++++K+ + GA ++ + PLH A G
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCG 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---------------- 634
+LD LI GA ++SEG T + A + ++ V +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Query: 635 -----------GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
IN ++G TAL +A K + +LLI I+D G
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-DGWTP 235
Query: 684 LHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 724
LH A + LV + +E N G T F + +E+I
Sbjct: 236 LHAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 143 bits (362), Expect = 6e-38
Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 8/182 (4%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
D++ ++ + + A G + V+ L++
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLER 62
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
GAD + +G T +HQA + +V +LV G N+N D G L +A LD
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDI 121
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 719
LI+ GA + G+ L A + + V+ +E + ML
Sbjct: 122 AEYLISQGAHVGAVNS-EGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-ML 178
Query: 720 LE 721
+
Sbjct: 179 RD 180
Score = 141 bits (357), Expect = 3e-37
Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 31/213 (14%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
V + + L + + E + + +GA ++ D T LH A
Sbjct: 27 PVVKRKKTKVKFDDGAVFLAACS-SGDTEEVLRLLERGADINYANVDGL-TALHQACIDD 84
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
++D V L+++GA+ D+EG +H AA G+ I YL+++G +V + G T L
Sbjct: 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Query: 651 W--------------------------SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
++ D + L + + K G AL
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTAL 203
Query: 685 HWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTP 716
H A AK + + L+ + I + G TP
Sbjct: 204 HVAA-AKGYTEVLKLLIQARYDVNIKDYDGWTP 235
Score = 123 bits (312), Expect = 3e-31
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 8/163 (4%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ + + A G + V+ L++ GAD + +G T +HQA
Sbjct: 24 LEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC 81
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+ +V +LV G N+N D G L +A LD LI+ GA + G
Sbjct: 82 IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNS-EG 139
Query: 121 NVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFMLLE 161
+ L A + + V+ +E + ML +
Sbjct: 140 DTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-MLRD 180
Score = 117 bits (295), Expect = 4e-29
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 9/155 (5%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ +GA ++ D T LH A ++D V L+++GA+ D+EG +H AA
Sbjct: 57 LRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G+ I YL+++G +V + G T L + + + + + +
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQNEVNRQ-------GVDIE 167
Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
A A L S + G T
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202
Score = 115 bits (290), Expect = 2e-28
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 13/166 (7%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQA 59
+Y ISQGA V A+ + TPL A + + + + + G D +
Sbjct: 122 AEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEE 173
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
+ +L + IN ++G TAL +A K + +LLI I+D
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-D 231
Query: 120 GNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 164
G LH A + LV + +E N G T F + +E+I
Sbjct: 232 GWTPLHAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 112 bits (284), Expect = 1e-27
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 69
+ DA G + + + +G+ A G T V
Sbjct: 3 MADAKQK----RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSGDTEEVL 57
Query: 70 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 129
L+ +G ++N + +G+TAL + ++D + L+ GA+ D G + LH A
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDD-NVDMVKFLVENGANINQPDN-EGWIPLHAAAS 115
Query: 130 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
++ I L+S + + N++G TP + EE
Sbjct: 116 -CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149
Score = 110 bits (277), Expect = 1e-26
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ T LH AA E++K I V+ D TPLH A G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGK 244
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
++ +L+++ D ++ G T A + + + + + +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295
Score = 103 bits (260), Expect = 2e-24
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 9/141 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ +++ + D++ R D+ L + G T +H AA
Sbjct: 156 QNEVNRQGV------DIE-AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G+T ++ L+ +VN++D +G T L +A+ + R+L+ +K G
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDMEAVNK-VGQ 266
Query: 122 VALHWAIYAKNHVAITTLVSH 142
A A
Sbjct: 267 TAFDVADEDILGYLEELQKKQ 287
Score = 78.7 bits (195), Expect = 5e-16
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K I V+ D TPLH A G ++ +L+++ D ++ G T A
Sbjct: 215 LKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Query: 61 QFGHTRIVAYLVAKGINVNLQD 82
+ + + + + +
Sbjct: 274 EDILGYLEELQKKQNLLHSEKR 295
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 149 bits (379), Expect = 4e-41
Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 10/196 (5%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATR 588
+ + D + LHW+ EI + +S+ V+ D TP H A
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 589 QGHLDSVVLLIQH--GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
G+L+ V L D + ++G TC+H A + +L+ G +V ++D+
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ 141
Query: 647 TALMWSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVS-HT 703
L +A SL LL G S QDK G L A+ + H LV +
Sbjct: 142 IPLHRAASV-GSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALA-EGHGDAAVLLVEKYG 198
Query: 704 SSLEIPNAQGLTPFML 719
+ ++ + +G +
Sbjct: 199 AEYDLVDNKGAKAEDV 214
Score = 140 bits (355), Expect = 8e-38
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)
Query: 547 TLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 605
LH A + N ++ + S+ +++ D + PLHW+ + L+ +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENV 62
Query: 606 TLMDS---EGSTCIHQAAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLD 660
L D G T H A G+ +V L + ++N G+T L + K +
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFE 121
Query: 661 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFM 718
++ LI GAS I+DK + LH A + + L S++ + QG TP
Sbjct: 122 VSQFLIENGASVRIKDK-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 719 L 719
Sbjct: 180 H 180
Score = 139 bits (354), Expect = 1e-37
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 13/175 (7%)
Query: 535 GQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQ--GAIVDAIGGDLQATPLHWATRQ 589
++VN D T H A +E++K + ++ I T LH A +
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGK 117
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTA 648
+ LI++GA + D +H+AA G +++ L G + VN QD+ G T
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 649 LMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
L + + D LL+ GA + D G A A+ + +++
Sbjct: 178 LFHALAE-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN-EQVKKF--FLNN 227
Score = 129 bits (326), Expect = 6e-34
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
D+N+ ++ VT LH A E+ ++ I GA V Q PLH A G L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLK 154
Query: 594 SVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW 651
+ LL G + D +G T + A GH LV K G +L D G A
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 652 SAYK 655
+ +
Sbjct: 215 ALNE 218
Score = 123 bits (312), Expect = 4e-32
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS---EGSTCIHQ 58
+ S+ +++ D + PLHW+ + L+ + L D G T H
Sbjct: 20 ELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 59 AAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
A G+ +V L + ++N G+T L + K + ++ LI GAS I+D
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGASVRIKD 137
Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
K + LH A + + L S++ + QG TP
Sbjct: 138 K-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Score = 117 bits (297), Expect = 5e-30
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Query: 1 MKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQH--GADPTLMDSEGSTCI 56
+ +S+ V+ D TP H A G+L+ V L D + ++G TC+
Sbjct: 52 TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Query: 57 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT-IQ 115
H A + +L+ G +V ++D+ L +A SL LL G S Q
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLIELLCGLGKSAVNWQ 170
Query: 116 DKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 159
DK G L A+ + H LV + + ++ + +G +
Sbjct: 171 DK-QGWTPLFHALA-EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 112 bits (284), Expect = 3e-28
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 2 KYFISQ--GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
K + ++ I T LH A + + LI++GA + D +H+A
Sbjct: 89 KSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 60 AQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDK 117
A G +++ L G + VN QD+ G T L + + D LL+ GA + D
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKYGAEYDLVDN 206
Query: 118 IHGNVALHWAIYAKNHVAITTLVSH 142
G A A+ + +++
Sbjct: 207 -KGAKAEDVALN-EQVKKF--FLNN 227
Score = 111 bits (281), Expect = 8e-28
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 21 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
PLH A + V LL + D +G +H + F I ++L++K NVN
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 80 LQ---DRNGMTALMWSAYKVFSLDPTRLLI--TFGASTTIQDKIHGNVALHWAIYAKNHV 134
L D +G T + +L+ + L G LH A+ K
Sbjct: 64 LDDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVG-KKWF 120
Query: 135 AIT-TLVSHTSSLEIPNAQGLTP 156
++ L+ + +S+ I + P
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIP 143
Score = 81.3 bits (202), Expect = 2e-17
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 52 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ +HQA V L +K + +D++G L WS + + T L++
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60
Query: 111 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 159
+ + D G H A ++ + +L ++ QG+T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Score = 81.3 bits (202), Expect = 2e-17
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 612 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+ +HQA V L +K + +D++G L WS + + T L++
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60
Query: 671 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 719
+ + D G H A ++ + +L ++ QG+T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 147 bits (373), Expect = 8e-41
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLI 599
E + + ++ ++ ++ GD +PLHWA R+G V +LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLI 59
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
GA +M+ T +H AA GH IV L+ ++N + +G L ++ +
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQD 118
Query: 660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
L+ GA +I +K +G + + A +
Sbjct: 119 QVAEDLVANGALVSICNK-YGEMPVDKAKA-PLRELLRERAEKM 160
Score = 142 bits (362), Expect = 3e-39
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
D+N+ D + LHWA R +++ I +GA ++ G D TPLH A GH
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHR 85
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
D V L+Q+ AD ++ G+ +H A +G ++ LVA G V++ ++ G + +
Sbjct: 86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 653 AYKVFSLDPTRLLITFGA 670
+ G
Sbjct: 146 KAPL-RELLRERAEKMGQ 162
Score = 125 bits (316), Expect = 4e-33
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 8/144 (5%)
Query: 2 KYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+ ++ ++ GD +PLHWA R+G V +LI GA +M+ T +H A
Sbjct: 22 RLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
A GH IV L+ ++N + +G L ++ + L+ GA +I +K +
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSICNK-Y 137
Query: 120 GNVALHWAIYAKNHVAIT-TLVSH 142
G + + A +
Sbjct: 138 GEMPVDKAKA-PLRELLRERAEKM 160
Score = 117 bits (295), Expect = 3e-30
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
+ R+G+ +V L + + D D G + +H A + G + +V L+ +G +N
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
+ +R T L +A D + L+ + A ++ HGNV LH+A + +
Sbjct: 67 VMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAVNE-HGNVPLHYACF-WGQDQVAED 123
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
LV++ + + I N G P
Sbjct: 124 LVANGALVSICNKYGEMPVDK 144
Score = 115 bits (291), Expect = 8e-30
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G +N + T LH AA + +I++ + A ++A+ PLH+A G
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQ 117
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
L+ +GA ++ + G + +A + G N+N
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 92.9 bits (232), Expect = 6e-22
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ D+N + LH+A + ++ + ++ GA+V + P+ A
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE-MPVDKAKAPLR 150
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
+ G + G TR
Sbjct: 151 ELLRERAEKMGQNL------NRIPYKDTFWKGTTR 179
Score = 85.6 bits (213), Expect = 2e-19
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + A ++A+ PLH+A G L+ +GA ++ + G + +A
Sbjct: 89 QKLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
Query: 62 FGHTRIVAYLVAKGINVN 79
+ G N+N
Sbjct: 148 PLRELLRERAEKMGQNLN 165
Score = 83.3 bits (207), Expect = 2e-18
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
E I + G+ V + ++N D +G + L W+ + +LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSAVVEMLIM 60
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
GA + ++ + LH A H I L+ + + + N G P
Sbjct: 61 RGARINVMNR-GDDTPLHLAAS-HGHRDIVQKLLQYKADINAVNEHGNVP 108
Score = 62.4 bits (153), Expect = 2e-11
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ GA+V + P+ A + G +
Sbjct: 122 EDLVANGALVSICNKYGE-MPVDKAKAPLRELLRERAEKMGQNL------NRIPYKDTFW 174
Query: 62 FGHTR 66
G TR
Sbjct: 175 KGTTR 179
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 148 bits (376), Expect = 9e-41
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
D+ + T R ++ V PLH A ++G+L +
Sbjct: 37 DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAES-IDNPLHEAAKRGNLSWLR 90
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYK 655
+ + +D GST ++ A GH IV L + I +N Q++ G TAL +A+K
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 714
D +LL+ GA T +++ +A A ++ + + NA+
Sbjct: 151 G-YADIVQLLLAKGARTDLRNI-EKKLAFDMATN-AACASLLKKKQGTDAVRTLSNAEDY 207
Query: 715 TP 716
Sbjct: 208 LD 209
Score = 146 bits (370), Expect = 6e-40
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 4/157 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ V E LH AA + ++ + V+ + T L+WA GH
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGH 118
Query: 592 LDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
D V +L + + G T +H AA G+ IV L+AKG +L++ A
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 687
+ + A T+ + + +
Sbjct: 179 MATNAA-CASLLKKKQGTDAVRTLSNA-EDYLDDEDS 213
Score = 132 bits (334), Expect = 4e-35
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 11/175 (6%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
+ A + + I D+ T T +G +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTG-----LIPSNYVA 67
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
+H+AA+ G+ + + + VN D+ G TAL W+ + D +L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLF 126
Query: 667 T-FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
T Q+K G+ ALH A + K + I L++ + ++ N + F +
Sbjct: 127 TQPNIELNQQNK-LGDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Score = 131 bits (333), Expect = 5e-35
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
+ V PLH A ++G+L + + + +D GST ++ A GH
Sbjct: 60 LIPSNYVAEQAES-IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118
Query: 65 TRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 123
IV L + I +N Q++ G TAL +A+K D +LL+ GA T +++ +A
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG-YADIVQLLLAKGARTDLRNI-EKKLA 176
Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
A ++ + + NA+
Sbjct: 177 FDMATN-AACASLLKKKQGTDAVRTLSNAEDYLD 209
Score = 131 bits (331), Expect = 1e-34
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 2/125 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQG 590
++ VN D T L+WA +I++ +Q ++ L T LH A +G
Sbjct: 93 LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAWKG 151
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ D V LL+ GA L + E A ++ L +
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDE 211
Query: 651 WSAYK 655
S +
Sbjct: 212 DSDLE 216
Score = 119 bits (301), Expect = 1e-30
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 4/128 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQA 59
++ + V+ + T L+WA GH D V +L + + G T +H A
Sbjct: 89 LRECLDNRVGVNGLDKAGS-TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
A G+ IV L+AKG +L++ A + + A T+ +
Sbjct: 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA-CASLLKKKQGTDAVRTLSNA-E 205
Query: 120 GNVALHWA 127
+ +
Sbjct: 206 DYLDDEDS 213
Score = 114 bits (287), Expect = 9e-29
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + I D+ T T +G + +H+AA+
Sbjct: 29 DELYIEEGDIIYIT-DMSDTNWWKGTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAK 82
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHG 120
G+ + + + VN D+ G TAL W+ + D +L T Q+K G
Sbjct: 83 RGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLFTQPNIELNQQNK-LG 140
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
+ ALH A + K + I L++ + ++ N + F +
Sbjct: 141 DTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Score = 101 bits (254), Expect = 2e-24
Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+ A + L D + T + G T ++ V
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAE 68
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
Q + L +A + +L R + DK G+ AL+WA + H I L
Sbjct: 69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGLDK-AGSTALYWACH-GGHKDIVEML 125
Query: 140 VSHT-SSLEIPNAQGLTP 156
+ L N G T
Sbjct: 126 FTQPNIELNQQNKLGDTA 143
Score = 100 bits (250), Expect = 7e-24
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 2 KYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ +Q ++ L T LH A +G+ D V LL+ GA L + E A
Sbjct: 123 EMLFTQPNIELNQ-QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
++ L + S +
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 98.9 bits (247), Expect = 2e-23
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
+ ++N+ + T LH AA +I++ +++GA D + + AT
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACA 186
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624
+ A TL ++E + H
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 72.7 bits (179), Expect = 2e-14
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G + +A R L + ++ T K R +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
Q + + LH A + +++ + + + + G T
Sbjct: 66 VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109
Score = 72.7 bits (179), Expect = 2e-14
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G + +A R L + ++ T K R +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
Q + + LH A + +++ + + + + G T
Sbjct: 66 VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109
Score = 67.7 bits (166), Expect = 9e-13
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ +++GA D + + AT + A TL ++E +
Sbjct: 156 VQLLLAKGARTDLRNIEKK-LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
Query: 61 QFGH 64
H
Sbjct: 215 LEHH 218
Score = 61.5 bits (150), Expect = 1e-10
Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G + + E A ++K A+ + + + H
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE-DYLDDEDSDLEHH 218
Query: 592 LD 593
Sbjct: 219 HH 220
Score = 41.1 bits (97), Expect = 8e-04
Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)
Query: 79 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 138
+ G + + Y F L + K T
Sbjct: 6 PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
+ ++ + P
Sbjct: 59 GLIPSNYVAEQAESIDNPLHE 79
Score = 41.1 bits (97), Expect = 8e-04
Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)
Query: 639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 698
+ G + + Y F L + K T
Sbjct: 6 PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58
Query: 699 LVSHTSSLEIPNAQGLTPFML 719
+ ++ + P
Sbjct: 59 GLIPSNYVAEQAESIDNPLHE 79
Score = 33.0 bits (76), Expect = 0.33
Identities = 3/32 (9%), Positives = 7/32 (21%), Gaps = 1/32 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLD 33
K A+ + + + H
Sbjct: 190 KKKQGTDAVRTLSNAE-DYLDDEDSDLEHHHH 220
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 144 bits (367), Expect = 3e-40
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
L AA + + ++ ++ GA L +PLH A + GH + +L++ G
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
T +H AA GH IV L+ G +VN +D MTAL W+ + LLI
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLI 120
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699
+GA Q K A +I + + +
Sbjct: 121 KYGADVHTQSK-FCKTAFDISID-NGNEDLAEI 151
Score = 128 bits (324), Expect = 1e-34
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G D + LH AA + + G DA + TPLH A +G
Sbjct: 21 LMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEG 78
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
H + V +L++HGAD D T +H A + H +V L+ G +V+ Q + TA
Sbjct: 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138
Query: 651 WSAYK 655
S
Sbjct: 139 ISIDN 143
Score = 122 bits (308), Expect = 2e-32
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ GA L +PLH A + GH + +L++ G T +H AA
Sbjct: 19 RILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
GH IV L+ G +VN +D MTAL W+ + LLI +GA Q K
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSK-FCK 134
Query: 122 VALHWAIYAKNHVAITTL 139
A +I + + +
Sbjct: 135 TAFDISID-NGNEDLAEI 151
Score = 110 bits (278), Expect = 2e-28
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
L A R G D V +L+ +GA T D G++ +H AAQ+GH L+ G++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ + T L +A + + +L+ GA +D ALHWA NH + L
Sbjct: 63 RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119
Query: 140 VSHTSSLEIPNAQGLTPFML 159
+ + + + + T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139
Score = 110 bits (278), Expect = 2e-28
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
L A R G D V +L+ +GA T D G++ +H AAQ+GH L+ G++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 699
+ + T L +A + + +L+ GA +D ALHWA NH + L
Sbjct: 63 RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119
Query: 700 VSHTSSLEIPNAQGLTPFML 719
+ + + + + T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139
Score = 104 bits (263), Expect = 3e-26
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ AG + T LH AA I++ + GA V+A T LHWAT H
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNH 112
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
+ V LLI++GAD T + G+ + L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 78.2 bits (194), Expect = 5e-17
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ + +AA+ G V L+A G D G + L +A T +L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58
Query: 111 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
S + K LH A + H I L+ H + + + +T
Sbjct: 59 SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106
Score = 78.2 bits (194), Expect = 5e-17
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+ + +AA+ G V L+A G D G + L +A T +L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58
Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
S + K LH A + H I L+ H + + + +T
Sbjct: 59 SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106
Score = 74.0 bits (183), Expect = 1e-15
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + GA V+A T LHWAT H + V LLI++GAD T +
Sbjct: 84 EVLLKHGADVNAKDMLKM-TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142
Query: 62 FGHTRIVAYL 71
G+ + L
Sbjct: 143 NGNEDLAEIL 152
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 151 bits (384), Expect = 3e-40
Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 33/211 (15%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
+ + D E + +H AA + + ++ I G T LH A + G +D+
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK 70
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG--------------------- 635
L G +L G IH A T +V LV
Sbjct: 71 YLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE 128
Query: 636 INVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
I +++ G TAL W L+ ++L+ GAS T +DK L A+ +
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNR 186
Query: 695 AITTL------VSHTSSLEIPNAQGLTPFML 719
L + L+ N QG +
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217
Score = 140 bits (354), Expect = 3e-36
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 21/206 (10%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI-----SQGAIVDAIGGDLQATPLHWA 586
V+ G D T L A E + + +D + LHWA
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWA 218
Query: 587 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--- 643
D + ++ G D + D+E + ++ + + + L+ K +Q
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278
Query: 644 NGMTALMWSAYKVFSL---------DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
NG T L + + + +LL G K
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN-TGAGGAVKRKK-KAAP 336
Query: 695 AIT-TLVSHTSSLEIPNAQGLTPFML 719
A+ ++ ++ + + +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 127 bits (322), Expect = 4e-32
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 27/196 (13%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG- 590
VE ++ + + E+ + G+ V G T LHW G
Sbjct: 104 VEGAKERGQ------MPESLLNECDEREVNEI----GSHVKHCKGQ---TALHWCVGLGP 150
Query: 591 -HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----AKGINVNLQDRN 644
+L+ + +L+Q GA PT D T + +A +F + + ++ + ++ ++
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT 703
G + L W+ D + G ++D V L+ ++ V +T L+ T
Sbjct: 211 GNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAMVLLTKELLQKT 267
Query: 704 SSLEIPNAQ---GLTP 716
I G T
Sbjct: 268 DVFLIQACPYHNGTTV 283
Score = 125 bits (316), Expect = 3e-31
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----------- 579
FVE G DVN D+E L+ + + + K + + +
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289
Query: 580 -ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
+ A + + LL + + + G+ + + + +A V
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 639 NLQDRNGMTALM 650
+ R+ +
Sbjct: 350 RTRSRSRARSSA 361
Score = 121 bits (305), Expect = 8e-30
Identities = 40/187 (21%), Positives = 60/187 (32%), Gaps = 33/187 (17%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
++ I G T LH A + G +D+ L G +L G IH A
Sbjct: 36 VRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAV 92
Query: 61 QFGHTRIVAYLVAKG---------------------INVNLQDRNGMTALMWSAYK-VFS 98
T +V LV I +++ G TAL W
Sbjct: 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY 152
Query: 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL------VSHTSSLEIPNAQ 152
L+ ++L+ GAS T +DK L A+ + L + L+ N Q
Sbjct: 153 LEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 153 GLTPFML 159
G +
Sbjct: 211 GNSHLHW 217
Score = 119 bits (301), Expect = 3e-29
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-----QHGADPTLMDSEGSTC 55
+K + GA A TPL A + +++ L++ + + +G++
Sbjct: 156 IKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214
Query: 56 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
+H A + V GI+VN++D L S + T+ L+ IQ
Sbjct: 215 LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQ 273
Query: 116 D------------KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
++ + A + + L + G +
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAAD-PSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329
Score = 114 bits (288), Expect = 1e-27
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)
Query: 7 QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
G++ D + +H A R+G D V LI+ G PT+ + G T +H A
Sbjct: 2 PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 112
+FG YL + G + +G + + D L+
Sbjct: 62 KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118
Query: 113 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 157
++ G ALHW + ++ + LV +S + TP
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Query: 158 ML 159
M
Sbjct: 178 MR 179
Score = 114 bits (288), Expect = 1e-27
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)
Query: 567 QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
G++ D + +H A R+G D V LI+ G PT+ + G T +H A
Sbjct: 2 PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 672
+FG YL + G + +G + + D L+
Sbjct: 62 KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118
Query: 673 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
++ G ALHW + ++ + LV +S + TP
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Query: 718 ML 719
M
Sbjct: 178 MR 179
Score = 113 bits (286), Expect = 2e-27
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
Query: 21 TPLHWATRQG--HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----A 73
T LHW G +L+ + +L+Q GA PT D T + +A +F + + ++
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199
Query: 74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
+ ++ ++ G + L W+ D + G ++D V L+ ++
Sbjct: 200 SSLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAM 256
Query: 134 VAIT-TLVSHTSSLEIPNAQ---GLTP 156
V +T L+ T I G T
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTV 283
Score = 110 bits (277), Expect = 4e-26
Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 21/177 (11%)
Query: 1 MKYFI-----SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 55
+ + +D + LHWA D + ++ G D + D+E +
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247
Query: 56 IHQAAQFGHTRIVAYLVAKGINVNLQDR---NGMTALMWSAYKVFSL---------DPTR 103
++ + + + L+ K +Q NG T L + + + +
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307
Query: 104 LLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LL G K A+ ++ ++ + + +
Sbjct: 308 LLQEKLDEVVRSLN-TGAGGAVKRKK-KAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 89.9 bits (224), Expect = 2e-19
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 1/85 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G V + + AA ++ E+++ + V ++
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAV 338
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQA 619
+ + A + +
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 59.5 bits (145), Expect = 2e-09
Identities = 2/58 (3%), Positives = 10/58 (17%), Gaps = 1/58 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+ + V ++ + + A + +
Sbjct: 307 QLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 144 bits (367), Expect = 3e-40
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
L AA +E + + V+A G + T L + G+ + L+ GA+P
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPD 64
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
L D G IH AA+ G + L+ +VN++D G L +A + L L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLV 123
Query: 667 TFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
AS ++ G+ A A + + ++
Sbjct: 124 KHTASNVGHRNH-KGDTACDLARL-YGRNEVVSLMQAN 159
Score = 129 bits (328), Expect = 5e-35
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
++ +VN + T L + N EI + + +GA D +H A R G
Sbjct: 24 LLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGF-AVIHDAARAG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTAL 649
LD++ L++ AD + D+EG+ +H AA+ GH R+V +LV NV ++ G TA
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 650 MWSAYKVFSLDPTRLLITFGA 670
+ + L+ GA
Sbjct: 142 DLARLY-GRNEVVSLMQANGA 161
Score = 120 bits (305), Expect = 6e-32
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ V+A G + T L + G+ + L+ GA+P L D G IH AA+
Sbjct: 22 TSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAAR 79
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHG 120
G + L+ +VN++D G L +A + L L+ AS ++ G
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KG 137
Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
+ A A + + ++
Sbjct: 138 DTACDLARL-YGRNEVVSLMQAN 159
Score = 116 bits (294), Expect = 2e-30
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
L A +G L+ + L+Q+ + + G T + + G+ I L+ +G N +L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDL 65
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-L 139
+DR G + +A LD + L+ F A I+D GN+ LH A + H+ + L
Sbjct: 66 KDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAK-EGHLRVVEFL 122
Query: 140 VSH-TSSLEIPNAQGLTPFML 159
V H S++ N +G T L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143
Score = 83.2 bits (207), Expect = 1e-18
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 48 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
M + AA G + L+ +NVN Q+ G TAL + + R L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
GA+ ++D+ G +H A + TL+ + + I + +G P L
Sbjct: 59 RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Score = 83.2 bits (207), Expect = 1e-18
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
M + AA G + L+ +NVN Q+ G TAL + + R L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58
Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
GA+ ++D+ G +H A + TL+ + + I + +G P L
Sbjct: 59 RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Score = 72.4 bits (179), Expect = 6e-15
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA 60
+ + A V+ + PLH A ++GHL V L++H A + + +G T A
Sbjct: 87 QTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 61 QFGHTRIVAYLVAKG 75
+G +V+ + A G
Sbjct: 146 LYGRNEVVSLMQANG 160
Score = 47.0 bits (113), Expect = 3e-06
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 2 KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
++ + A V T A G + V L+ +GA
Sbjct: 120 EFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 144 bits (367), Expect = 3e-40
Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLD 593
G N +++ L AA +E +K + ++ I G TPLH+A +
Sbjct: 1 GAMGNS-EADRQ--LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVS 56
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
V L+QHGAD D G +H A +GH + LV G VN+ D T L +A
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 654 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
K + +LL+ GA T +++ GN L I L
Sbjct: 117 AK-GKYEICKLLLQHGADPTKKNR-DGNTPLDLV--KDGDTDIQDLLRGD 162
Score = 137 bits (349), Expect = 9e-38
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
+ + + T LH+AA NR+ +++Y + GA V A GG PLH A GH
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL---VPLHNACSYGHY 88
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
+ LL++HGA + D T +H+AA G I L+ G + ++R+G T L
Sbjct: 89 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148
Query: 653 AYKVFSLDPTRLLITFGA 670
D LL A
Sbjct: 149 KDG--DTDIQDLLRGDAA 164
Score = 119 bits (302), Expect = 2e-31
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 2 KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
K + ++ I G TPLH+A + V L+QHGAD D G +H A
Sbjct: 25 KKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
+GH + LV G VN+ D T L +A K + +LL+ GA T +++ G
Sbjct: 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTKKNR-DG 141
Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
N L I L
Sbjct: 142 NTPLDLV--KDGDTDIQDLLRGD 162
Score = 112 bits (282), Expect = 1e-28
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 66
GA+ ++ L A + G +++V L + ++ ST +H AA +
Sbjct: 1 GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 67 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
+V YL+ G +V+ +D+ G+ L + + LL+ GA + D LH
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114
Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
A K I L+ H + N G TP L+++
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 112 bits (282), Expect = 1e-28
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 568 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 626
GA+ ++ L A + G +++V L + ++ ST +H AA +
Sbjct: 1 GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
+V YL+ G +V+ +D+ G+ L + + LL+ GA + D LH
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114
Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
A K I L+ H + N G TP L+++
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 105 bits (266), Expect = 1e-26
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 2 KYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+Y + GA V A GG PLH A GH + LL++HGA + D T +H+A
Sbjct: 59 EYLLQHGADVHAKDKGGL---VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
A G I L+ G + ++R+G T L D LL A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG--DTDIQDLLRGDAA 164
Score = 75.9 bits (188), Expect = 4e-16
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
V+ G VN D T LH AA + EI K + GA D TPL + G
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN-TPLDLV-KDGD 152
Query: 592 LDSVVLLIQHGA 603
D LL A
Sbjct: 153 TDIQDLLRGDAA 164
Score = 42.0 bits (100), Expect = 2e-04
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
G D + + + T L + +I A+
Sbjct: 131 GADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 142 bits (362), Expect = 7e-40
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
++ + L AA ++E ++ + GA +A+ + P+ G
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMM-MGSAQ 58
Query: 594 SVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
LL+ HGA+P D T +H AA+ G + L G +++ D G + +
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 653 AYKVFSLDPTRLLITFGA 670
+ D R L
Sbjct: 119 EEQG-HRDIARYLHAATG 135
Score = 117 bits (295), Expect = 7e-31
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
+ +GG L A +G +++V L++ GADP ++ G I G ++
Sbjct: 2 SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59
Query: 68 VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
L+ G N D +T + +A + LD +L GA + D G + +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117
Query: 127 AIYAKNHVAIT-TLVSH 142
A + H I L +
Sbjct: 118 AEE-QGHRDIARYLHAA 133
Score = 117 bits (295), Expect = 7e-31
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 568 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 627
+ +GG L A +G +++V L++ GADP ++ G I G ++
Sbjct: 2 SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59
Query: 628 VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
L+ G N D +T + +A + LD +L GA + D G + +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117
Query: 687 AIYAKNHVAIT-TLVSH 702
A + H I L +
Sbjct: 118 AEE-QGHRDIARYLHAA 133
Score = 115 bits (290), Expect = 3e-30
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+EAG D N + + ++ + + GA + P+H A R+G
Sbjct: 32 LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
LD++V+L + GA + D+ G + A + GH I YL A
Sbjct: 91 LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 109 bits (274), Expect = 5e-28
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC-IHQAA 60
+ + GA +A+ + P+ G LL+ HGA+P D T +H AA
Sbjct: 29 RQLLEAGADPNALNRFGR-RPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ G + L G +++ D G + + + D R L
Sbjct: 87 REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG-HRDIARYLHAATG 135
Score = 91.7 bits (229), Expect = 6e-22
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
++ + AA G V L+ G + N +R G + S
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59
Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
LL+ GA D +H A + + L + L++ +A G P L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 91.7 bits (229), Expect = 6e-22
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
++ + AA G V L+ G + N +R G + S
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
LL+ GA D +H A + + L + L++ +A G P L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 86.7 bits (216), Expect = 3e-20
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 532 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G + N D T+T +H AA ++ + GA +D + P+ A QG
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVDLAEEQG 122
Query: 591 HLDSVVLLIQHGAD 604
H D L D
Sbjct: 123 HRDIARYLHAATGD 136
Score = 56.7 bits (138), Expect = 9e-10
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 44
GA +D + P+ A QGH D L D
Sbjct: 95 VVLHRAGARLDVCDAWGR-LPVDLAEEQGHRDIARYLHAATGD 136
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 142 bits (361), Expect = 2e-39
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+E + S L AA R+E ++ + GA +A + P+ G
Sbjct: 1 MEPAAGSSMEPSADW--LATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GS 56
Query: 592 LDSVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
LL+ HGA+P D T +H AA+ G + L G ++++D G +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
+ D R L T + A+ I
Sbjct: 117 LAEELG-HRDVARYLRAAAGGTRGSNH------ARIDA-AEGPSDI 154
Score = 116 bits (293), Expect = 2e-30
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
+ A L A +G ++ V L++ GA+P +S G I G
Sbjct: 1 MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 65 TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 123
R+ L+ G N D +T + +A + F LD +L GA ++D G +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114
Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+ A H + L + N +
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147
Score = 116 bits (293), Expect = 2e-30
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 565 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624
+ A L A +G ++ V L++ GA+P +S G I G
Sbjct: 1 MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 625 TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
R+ L+ G N D +T + +A + F LD +L GA ++D G +
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114
Query: 684 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
+ A H + L + N +
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147
Score = 113 bits (286), Expect = 2e-29
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 11/137 (8%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC-IHQA 59
++ + GA +A + P+ G LL+ HGA+P D T +H A
Sbjct: 28 VRALLEAGANPNAPNSYGR-RPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDA 85
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
A+ G + L G ++++D G + + D R L T +
Sbjct: 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG-HRDVARYLRAAAGGTRGSNH-- 142
Query: 120 GNVALHWAIYAKNHVAI 136
A+ I
Sbjct: 143 ----ARIDA-AEGPSDI 154
Score = 98.7 bits (247), Expect = 3e-24
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 532 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ G + N D T+T +H AA ++ + GA +D + P+ A G
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELG 122
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
H D L GS A G + I
Sbjct: 123 HRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155
Score = 92.9 bits (232), Expect = 4e-22
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 39 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98
++ A ++ + + AA G V L+ G N N + G + S
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56
Query: 99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 157
LL+ GA D +H A + + L + L++ +A G P
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 158 ML 159
L
Sbjct: 116 DL 117
Score = 92.9 bits (232), Expect = 4e-22
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 658
++ A ++ + + AA G V L+ G N N + G + S
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56
Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
LL+ GA D +H A + + L + L++ +A G P
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 718 ML 719
L
Sbjct: 116 DL 117
Score = 67.9 bits (167), Expect = 2e-13
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
GA +D + P+ A GH D L GS A
Sbjct: 95 VVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAA 148
Query: 62 FGHTRIV 68
G + I
Sbjct: 149 EGPSDIP 155
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 145 bits (366), Expect = 2e-39
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+ D ++ T LHWA EI+++ + G V+ +PLH A G
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAG 84
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
+ V L+ GA ++ G T +H AA I L+ G N + +D TA+
Sbjct: 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 710
+A K +L +L+ + AST IQD GN LH A + LV+ +S+ I N
Sbjct: 145 RAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 711 AQGLTPFMLLEENI 724
+ TP + + +
Sbjct: 203 KEEKTPLQVAKGGL 216
Score = 143 bits (362), Expect = 8e-39
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 3/177 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
+ + A E+ + ++ ++ D T LHWA GH + V L+Q G
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
D G + +H AA G IV L+ KG +VN ++NG T L ++A K + +L+
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLL 126
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
GA+ +D + A+H A N + L+ + +S I + +G TP L +
Sbjct: 127 EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Score = 123 bits (311), Expect = 4e-32
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G VN+ D + LH AA EI+K + +GA V+A+ + TPLH+A +
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNR 118
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ V+L++ GA+P D +T +H+AA G+ ++V L+ + N+QD G T L
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
+ + ++ + L+T GAS I++K L A I ++
Sbjct: 179 ACDEE-RVEEAKFLVTQGASIYIENK-EEKTPLQVA--KGGLGLILKRLAE 225
Score = 121 bits (304), Expect = 4e-31
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ ++ D T LHWA GH + V L+Q G D G + +H AA
Sbjct: 24 ERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
G IV L+ KG +VN ++NG T L ++A K + +L+ GA+ +D +
Sbjct: 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDH-YDA 140
Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
A+H A N + L+ + +S I + +G TP L +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Score = 111 bits (280), Expect = 6e-28
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 3/164 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+++ + G V+ +PLH A G + V L+ GA ++ G T +H AA
Sbjct: 56 VEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
I L+ G N + +D TA+ +A K +L +L+ + AST IQD G
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EG 172
Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164
N LH A + LV+ +S+ I N + TP + + +
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216
Score = 110 bits (277), Expect = 2e-27
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 2/143 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
+ A + ++ + T D + T +H A GHT IV +L+ G+ VN
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
+D G + L +A + + L+ GA ++ +G LH+A H L+
Sbjct: 69 KDDAGWSPLHIAASAG-XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLL 126
Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
++ + + T
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAK 149
Score = 95.7 bits (238), Expect = 3e-22
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+K + +GA V+A+ + TPLH+A + + V+L++ GA+P D +T +H+AA
Sbjct: 89 VKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
G+ ++V L+ + N+QD G T L + + ++ + L+T GAS I++K
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE-RVEEAKFLVTQGASIYIENK-EE 205
Query: 121 NVALHWAIYAKNHVAITTLVSH 142
L A I ++
Sbjct: 206 KTPLQVA--KGGLGLILKRLAE 225
Score = 89.9 bits (223), Expect = 3e-20
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+E G + + D T +H AA ++++ + A + + TPLH A +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEE 183
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
++ L+ GA + + E T + A G ++ +A+G ++
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 80.3 bits (198), Expect = 5e-17
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
+ A + ++A D++ TAL W+ + L+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
+D G LH A A + L+ + + N G TP
Sbjct: 66 VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Score = 80.3 bits (198), Expect = 5e-17
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
+ A + ++A D++ TAL W+ + L+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
+D G LH A A + L+ + + N G TP
Sbjct: 66 VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Score = 65.7 bits (160), Expect = 6e-12
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+ + A + + TPLH A + ++ L+ GA + + E T + A
Sbjct: 155 VHILLFYKASTNIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 61 QFGHTRIVAYLVAKGINVNL 80
G ++ +A+G ++
Sbjct: 214 --GGLGLILKRLAEGEEASM 231
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 145 bits (368), Expect = 5e-39
Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 18/196 (9%)
Query: 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 595
+ ++ + T LH AAI ++ + GA V T LH A R
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCA 94
Query: 596 VLLIQHGADPTLMDSEGSTC--------------IHQAAQFGHTRIVAYLVAKGINVNLQ 641
+L+Q S+ + + + +
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLV 700
+ +G T L + + RLL GA + G LH A+ ++ L+
Sbjct: 155 NYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLL 212
Query: 701 SHTSSLEIPNAQGLTP 716
+ G TP
Sbjct: 213 KAGADPTARMYGGRTP 228
Score = 142 bits (360), Expect = 8e-38
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 580
AG V + T LH A + D
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 581 -TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
P ++ + + +G T +H A +V L G ++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 639 NLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 697
N + G T L + + LL+ GA T + G L A+ + + +
Sbjct: 185 NKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALL-RPNPILA 241
Query: 698 -TLVSHTSSLEIPNAQGLTPFML 719
L +H + L+P
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSS 264
Score = 141 bits (358), Expect = 1e-37
Identities = 27/124 (21%), Positives = 46/124 (37%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ + + + T LH A I+ E+++ GA ++ TPLH A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ LL++ GADPT G T + A + + L A G + ++
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Query: 652 SAYK 655
S
Sbjct: 265 SGSD 268
Score = 135 bits (342), Expect = 2e-35
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 19/190 (10%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
T LH A I+ + + + A + + DL T LH A G +V L GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMW 651
+ + G T +H A + L+ +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
+ + + ++ G+ LH A+ + L + L P
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPE 188
Query: 711 A-QGLTPFML 719
G TP L
Sbjct: 189 PTCGRTPLHL 198
Score = 118 bits (299), Expect = 9e-30
Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 18/170 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC------ 55
+ + GA V T LH A R +L+Q S+
Sbjct: 62 EKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120
Query: 56 --------IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
+ + + ++ +G T L + + RLL
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH-KDAEMVRLLRD 179
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
GA + G LH A+ ++ L+ + G TP
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGRTP 228
Score = 113 bits (285), Expect = 6e-28
Identities = 31/155 (20%), Positives = 44/155 (28%), Gaps = 17/155 (10%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
T LH A H + L+ A + + G T +H AA G V L A G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 78 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNVALH 125
V + +R G TAL + + +L+ S +
Sbjct: 71 VLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 126 WAIYAKNH-VAITTLVSHTSSLEIPNAQGLTPFML 159
LE N G TP +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Score = 112 bits (283), Expect = 1e-27
Identities = 25/173 (14%), Positives = 47/173 (27%), Gaps = 18/173 (10%)
Query: 2 KYFISQGAIVDAIGGDLQA------------TPLHWATRQGHLDSVV-LLIQHGADPTLM 48
+ D P ++ +
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 107
+ +G T +H A +V L G ++N + G T L + + LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAASVLELLLK 213
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
GA T + G L A+ + + + L +H + L+P
Sbjct: 214 AGADPTARMY-GGRTPLGSALL-RPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Score = 111 bits (281), Expect = 2e-27
Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 19/175 (10%)
Query: 2 KYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+ + A + + DL T LH A G +V L GA + + G T +H A
Sbjct: 26 DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Query: 60 AQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMWSAYKVFSLDPTRLLI 106
+ L+ + + +
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA-QGLTPFML 159
+ ++ G+ LH A+ + L + L P G TP L
Sbjct: 146 DWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Score = 111 bits (280), Expect = 3e-27
Identities = 21/94 (22%), Positives = 33/94 (35%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA ++ TPLH A + LL++ GADPT G T + A
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
+ + L A G + ++ S
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268
Score = 103 bits (258), Expect = 2e-24
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
+AG D+N+P+ T LH A +++ + GA A + TPL A +
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRP 236
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
+ LL HGA + + + +
Sbjct: 237 NPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 80.3 bits (199), Expect = 1e-16
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 49 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 105
+G T +H A H + +L+ ++LQ+ G TAL +A L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64
Query: 106 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
GA + ++ G+ ALH A L+ S +
Sbjct: 65 YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114
Score = 80.3 bits (199), Expect = 1e-16
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 665
+G T +H A H + +L+ ++LQ+ G TAL +A L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64
Query: 666 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
GA + ++ G+ ALH A L+ S +
Sbjct: 65 YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114
Score = 73.3 bits (181), Expect = 3e-14
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + GA A + TPL A + + LL HGA + + +
Sbjct: 209 ELLLKAGADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267
Query: 62 FGHTRIV 68
+
Sbjct: 268 DSDSDNR 274
Score = 69.5 bits (171), Expect = 6e-13
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++AG D T L A + + + + GA GGD +P +
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSSSGSDSD 270
Query: 592 LDSVVLLIQHG 602
D+ ++
Sbjct: 271 SDNRDEGDEYD 281
Score = 47.2 bits (113), Expect = 1e-05
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 78 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 134
+G TAL + L+ F A +Q+ G ALH A
Sbjct: 2 FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58
Query: 135 AIT-TLVSHTSSLEIPNAQGLTPFML 159
+ L + + + + G T L
Sbjct: 59 STVEKLYAAGAGVLVAERGGHTALHL 84
Score = 47.2 bits (113), Expect = 1e-05
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 694
+G TAL + L+ F A +Q+ G ALH A
Sbjct: 2 FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58
Query: 695 AIT-TLVSHTSSLEIPNAQGLTPFML 719
+ L + + + + G T L
Sbjct: 59 STVEKLYAAGAGVLVAERGGHTALHL 84
Score = 39.8 bits (94), Expect = 0.003
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 42
+ + GA GGD +P + D+ ++
Sbjct: 242 RLLRAHGAPEPEDGGDKL-SPCSSSGSDSDSDNRDEGDEYD 281
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 143 bits (363), Expect = 7e-39
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 8/194 (4%)
Query: 531 FVEAGQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
+ + + LL AA+ +E+++ + + + T LH A
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALHNAI 62
Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GM 646
+ V LI GA+ DS G T +H AA T I LV G + + G
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 647 TALMW-SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
TA Y+ D L S + + AL A+ ++ + +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYS-AEFGDELSFREGESVT 180
Query: 706 LEIPNAQGLTPFML 719
+ + T +
Sbjct: 181 VLRRDGPEETDWWW 194
Score = 137 bits (346), Expect = 1e-36
Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 8/170 (4%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
Q V+ D ++P+ E +T LH A I+ + I+ GA V++ TPLH A
Sbjct: 39 QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASC 97
Query: 590 GHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGM 646
+ L+QHGA S+G+T + + G+ YL ++ L + +
Sbjct: 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157
Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
AL + + D + +D WA
Sbjct: 158 YALWDYSAE--FGDELSFREGESVTVLRRDG-PEETDWWWAAL-HGQEGY 203
Score = 129 bits (327), Expect = 5e-34
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)
Query: 1 MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
M+ + + L A G L+ V ++ DP+ + EG T +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 59 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
A + IV +L+ G NVN D +G T L +A L+ GA+
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119
Query: 119 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 156
G A + + T L S+ + N+ +
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159
Score = 129 bits (327), Expect = 5e-34
Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)
Query: 561 MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
M+ + + L A G L+ V ++ DP+ + EG T +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
A + IV +L+ G NVN D +G T L +A L+ GA+
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119
Query: 679 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 716
G A + + T L S+ + N+ +
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159
Score = 88.5 bits (220), Expect = 9e-20
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWA--TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+ GA + A AT R+G+ D L LM+S +
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
+ +++ + + V +D T W+A
Sbjct: 164 SA-EFGDELSFREGESVTVLRRDGPEETDWWWAALH 198
Score = 73.1 bits (180), Expect = 2e-14
Identities = 14/117 (11%), Positives = 21/117 (17%), Gaps = 6/117 (5%)
Query: 532 VEAGQDVNEPDSET-VTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
V+ G + T + Y + + L +
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYS- 164
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRN 644
D + D T AA G V V Q
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221
Score = 64.6 bits (158), Expect = 1e-11
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 40/129 (31%)
Query: 35 VVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 91
+ +++ P + AA G +V V + + + + G+TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL-- 58
Query: 92 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 150
H AI + +I L++ +++ P+
Sbjct: 59 ---------------------------------HNAIC-GANYSIVDFLITAGANVNSPD 84
Query: 151 AQGLTPFML 159
+ G TP
Sbjct: 85 SHGWTPLHC 93
Score = 54.6 bits (132), Expect = 2e-08
Identities = 11/85 (12%), Positives = 15/85 (17%), Gaps = 3/85 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
Y + + L + D + D T AA
Sbjct: 139 ATYLADVEQSMGLMNSGAV-YALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAA 196
Query: 61 QFGHTRIVA-YLVAKGINVNLQDRN 84
G V V Q
Sbjct: 197 LHGQEGYVPRNYFGLFPRVKPQRSK 221
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 141 bits (357), Expect = 1e-38
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
+ E + A V + TP A R+ ++
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQ 62
Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV 656
L+ D +D G T + A G + V L G +++ +D R G+TAL +A V
Sbjct: 63 LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+ L+ GA ++D+ G AL A +
Sbjct: 122 -RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQF 165
Score = 135 bits (342), Expect = 1e-36
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
DV T AA + + + VDA+ + T L + G
Sbjct: 34 SYIAADVVSEYE---TPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGS 88
Query: 592 LDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
V LL + GAD D G T +H AA + +V LV G ++ ++D G+TAL
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 651 WSAYKVFSLDPTRLLITFGA 670
+ + P + FG
Sbjct: 149 LAREIL-KTTPKGNPMQFGR 167
Score = 121 bits (306), Expect = 7e-32
Identities = 25/109 (22%), Positives = 41/109 (37%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+DV+ D T L + A + ++ GA +D T LH A +
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
V L++ GAD + D G T + A + T + G + L+
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 119 bits (302), Expect = 3e-31
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 10/143 (6%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
A V + TP A R+ ++ L+ D +D G T + A
Sbjct: 31 VPSSYIAADVVSEY----ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAG 85
Query: 62 FGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
G + V L G +++ +D R G+TAL +A V + L+ GA ++D+ G
Sbjct: 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-RPEVVEALVELGADIEVEDE-RG 143
Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
AL A +
Sbjct: 144 LTALELARE-ILKTTPKGNPMQF 165
Score = 117 bits (297), Expect = 1e-30
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 7 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 66
I G+ A + GH S V AD + SE T AA+ +
Sbjct: 3 NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58
Query: 67 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
++ L+ + +V+ D NG TAL++ A S RLL GA +D G ALH
Sbjct: 59 ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
A + LV + +E+ + +GLT L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149
Score = 117 bits (297), Expect = 1e-30
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
I G+ A + GH S V AD + SE T AA+ +
Sbjct: 3 NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58
Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
++ L+ + +V+ D NG TAL++ A S RLL GA +D G ALH
Sbjct: 59 ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
A + LV + +E+ + +GLT L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149
Score = 107 bits (271), Expect = 5e-27
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQA 59
+ + VDA+ + T L + G V LL + GAD D G T +H A
Sbjct: 60 LSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
A + +V LV G ++ ++D G+TAL + + P + FG
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-KTTPKGNPMQFGR 167
Score = 90.6 bits (226), Expect = 4e-21
Identities = 19/81 (23%), Positives = 30/81 (37%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA +D T LH A + V L++ GAD + D G T + A +
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Query: 62 FGHTRIVAYLVAKGINVNLQD 82
T + G + L+
Sbjct: 153 ILKTTPKGNPMQFGRRIGLEK 173
Score = 45.6 bits (109), Expect = 1e-05
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
VE G D+ D +T L A + + G +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 141 bits (357), Expect = 4e-38
Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 29/195 (14%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQG 590
G +V++ + T LH AA+ + +E + + + T LH A
Sbjct: 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86
Query: 591 HLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
+++ V L+ GA P + G + AA G IV L+ G +
Sbjct: 87 NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146
Query: 638 VNLQDRNGMTALMWSAY---KVFSLDPTRLLITFGA------STTIQDKIHGNVALHWAI 688
+ QD G T L K F+ LL+++ + + G A
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAG 205
Query: 689 YAKNHVAIT-TLVSH 702
+ ++ + L+
Sbjct: 206 V-EGNIVMFQHLMQK 219
Score = 136 bits (346), Expect = 1e-36
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 547 TLLHWAAINNRIE-IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD- 604
+ L AA N ++ + K +G V G + T LH A +L++ ++L++ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPEL 63
Query: 605 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMT 647
T EG T +H A + +V L+A+G +V+ + G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH 702
L ++A S + RLLI GA QD GN LH I + + L+S+
Sbjct: 124 PLSFAACV-GSEEIVRLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSY 180
Query: 703 ------TSSLEIPNAQGLTPFML 719
S +PN QGLTPF L
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKL 203
Score = 118 bits (299), Expect = 3e-30
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD-----PTLMDSEGSTC 55
K +G V G + T LH A +L++ ++L++ + T EG T
Sbjct: 20 SKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78
Query: 56 IHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPT 102
+H A + +V L+A+G +V+ + G L ++A S +
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIV 137
Query: 103 RLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH------TSSLEIPNA 151
RLLI GA QD GN LH I + + L+S+ S +PN
Sbjct: 138 RLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195
Query: 152 QGLTPFML 159
QGLTPF L
Sbjct: 196 QGLTPFKL 203
Score = 118 bits (297), Expect = 6e-30
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 24/168 (14%)
Query: 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TPL 583
+ + E T LH A IN + +++ +++GA V A PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 584 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA----YLVAKGINVN 639
+A G + V LLI+HGAD DS G+T +H + L++ +
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 640 ------LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 681
+ + G+T + + ++ + L+ H +
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVE-GNIVMFQHLMQKRKHIAAAHH-HHH 231
Score = 111 bits (281), Expect = 7e-28
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)
Query: 2 KYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGAD------------- 44
+ + + T LH A +++ V L+ GA
Sbjct: 54 MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113
Query: 45 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY---KVFSLDP 101
P + G + AA G IV L+ G ++ QD G T L K F+
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173
Query: 102 TRLLITFGA------STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
LL+++ + + G A + ++ + L+
Sbjct: 174 YNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAGV-EGNIVMFQHLMQK 219
Score = 101 bits (254), Expect = 2e-24
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 21 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 78
+PL A ++ + ++ LL G + + G T +H AA + + L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 79 ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 122
+ G TAL + +++ R L+ GAS + + +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 123 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
L +A I L+ H + + ++ G T +L
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Score = 101 bits (254), Expect = 2e-24
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 581 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 638
+PL A ++ + ++ LL G + + G T +H AA + + L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 639 ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 682
+ G TAL + +++ R L+ GAS + + +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 683 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
L +A I L+ H + + ++ G T +L
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Score = 91.9 bits (229), Expect = 6e-21
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 24/142 (16%)
Query: 2 KYFISQGAIVDAIGGDLQA------------TPLHWATRQGHLDSVVLLIQHGADPTLMD 49
+ +++GA V A PL +A G + V LLI+HGAD D
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Query: 50 SEGSTCIHQAAQFGHTRIVA----YLVAKGINVN------LQDRNGMTALMWSAYKVFSL 99
S G+T +H + L++ + + + G+T + + ++
Sbjct: 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE-GNI 210
Query: 100 DPTRLLITFGASTTIQDKIHGN 121
+ L+ H +
Sbjct: 211 VMFQHLMQKRKHIAAAHH-HHH 231
Score = 72.6 bits (179), Expect = 2e-14
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEI----MKYFISQGAIVDAIGGDLQA-----TP 582
+E G D+ DS T+LH + +S +L TP
Sbjct: 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200
Query: 583 LHWATRQGHLDSVVLLIQHGADP 605
A +G++ L+Q
Sbjct: 201 FKLAGVEGNIVMFQHLMQKRKHI 223
Score = 66.9 bits (164), Expect = 2e-12
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 52 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ + AA+ + ++ L +G V+ + G TAL +A +L+ +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61
Query: 111 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
T + G ALH A+ +V + L++
Sbjct: 62 ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97
Score = 66.9 bits (164), Expect = 2e-12
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 612 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+ + AA+ + ++ L +G V+ + G TAL +A +L+ +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61
Query: 671 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
T + G ALH A+ +V + L++
Sbjct: 62 ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97
Score = 45.3 bits (108), Expect = 3e-05
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 532 VEAGQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDA 573
+ + E V T A + I + ++ + + + A
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 140 bits (354), Expect = 2e-37
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
+ E + A V + TP A R+ ++ L
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQL 64
Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF 657
+ D +D G T + A G + V L G +++ +D R G+TAL +A V
Sbjct: 65 L-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV- 122
Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
+ L+ GA ++D+ G AL A + + + +
Sbjct: 123 RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQFGRRI---GLEKVIN 177
Query: 717 FMLLEENIGAPWLGKATVDKITELKDHYNT 746
+ A VD+I E +
Sbjct: 178 VLE------GQVFEYAEVDEIVEKRGKGKD 201
Score = 135 bits (341), Expect = 8e-36
Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 27/184 (14%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+DV+ D T L + A + ++ GA +D T LH A +
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR---------- 643
V L++ GAD + D G T + A + T + G + L+
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185
Query: 644 ------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK 691
G +K D + A +D L +A+ A+
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKD-GGDCEWVKGVHVAEDVAKDY---EDGLEYAV-AE 240
Query: 692 NHVA 695
+ +
Sbjct: 241 SVIG 244
Score = 119 bits (301), Expect = 2e-30
Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 19/187 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
A V + TP A R+ ++ L+ D +D G T + A
Sbjct: 32 VPSSYIAADVVSEY----ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAG 86
Query: 62 FGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
G + V L G +++ +D R G+TAL +A V + L+ GA ++D+ G
Sbjct: 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-RPEVVEALVELGADIEVEDE-RG 144
Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
AL A + + + + + A VD+I E
Sbjct: 145 LTALELARE-ILKTTPKGNPMQFGRRI---GLEKVINVLE------GQVFEYAEVDEIVE 194
Query: 180 LKDHYNT 186
+
Sbjct: 195 KRGKGKD 201
Score = 117 bits (295), Expect = 1e-29
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 69
I+ + A + GH S V AD + SE T AA+ + ++
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62
Query: 70 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 129
L+ + +V+ D NG TAL++ A S RLL GA +D G ALH A
Sbjct: 63 QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 130 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
+ LV + +E+ + +GLT L E
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 117 bits (295), Expect = 1e-29
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 570 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 629
I+ + A + GH S V AD + SE T AA+ + ++
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62
Query: 630 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 689
L+ + +V+ D NG TAL++ A S RLL GA +D G ALH A
Sbjct: 63 QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 690 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
+ LV + +E+ + +GLT L E
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 104 bits (262), Expect = 3e-25
Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 27/156 (17%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ GA +D T LH A + V L++ GAD + D G T + A +
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Query: 62 FGHTRIVAYLVAKGINVNLQDR----------------------NGMTALMWSAYKVFSL 99
T + G + L+ G +K
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD-GG 212
Query: 100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 135
D + A +D L +A+ A++ +
Sbjct: 213 DCEWVKGVHVAEDVAKDY---EDGLEYAV-AESVIG 244
Score = 81.9 bits (203), Expect = 2e-17
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 14/124 (11%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
VE G D+ D +T L A + + G + + + +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFEY 186
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
+ ++ + G G + +D L +
Sbjct: 187 AEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEY 236
Query: 652 SAYK 655
+ +
Sbjct: 237 AVAE 240
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 143 bits (364), Expect = 2e-37
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATP 582
++ +P T+LHW A N+ E K I+ GA V+A+ D TP
Sbjct: 112 ITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-TP 169
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---GINVN 639
L A V L++ GADPT+ + + +HQAA ++ Y++ ++
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229
Query: 640 LQDRNGMTALMWSAYKVF--SLDPTRLLITFGA--------STTIQDKIHGNVALHWAIY 689
DRNGMTALM A+ + +LL+ GA + G ALH+A
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQ 288
Query: 690 AKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 719
+++ I LV S+ + + G TP ML
Sbjct: 289 -VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Score = 142 bits (361), Expect = 4e-37
Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 20/187 (10%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ---GAIVDAIGGDLQATPLHWATR 588
++AG D + + LH AA N +M Y ++ ++ + + T L
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALMIVAH 244
Query: 589 QGHLDSVV---LLIQHGADPTLM--------DSEGSTCIHQAAQFGHTRIVAYLVA-KGI 636
D V LL++ GA +G T +H AAQ + IV YLV KG
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
N + QD +G T +M +A + ++ LI GAS D + A A NH I
Sbjct: 305 NKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA-TDHTARQLAQA-NNHHNI 361
Query: 697 T-TLVSH 702
Sbjct: 362 VDIFDRC 368
Score = 141 bits (358), Expect = 9e-37
Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 18/209 (8%)
Query: 523 TSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 582
SL + + NE ++ N + + + I +
Sbjct: 39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE-SPIK 97
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV--------AYLVAK 634
LH G + + + T +H A +A
Sbjct: 98 LHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G +VN D + T LM + L+ GA TI +K ALH A
Sbjct: 156 GADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPTIYNK-SERSALHQAAA-NRDF 212
Query: 695 AITT-LVSHTSS---LEIPNAQGLTPFML 719
+ +++ T +E + G+T M+
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMI 241
Score = 128 bits (325), Expect = 2e-32
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQA-------TP 582
+ D+ E D +T L A N ++ K + +GA VD G + T
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282
Query: 583 LHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
LH+A + ++ V L+ + G++ D +G T I AAQ G +V YL+ +G +V
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGA 670
D TA + + +
Sbjct: 343 DATDHTARQLAQAN-NHHNIVDIFDRCRP 370
Score = 122 bits (309), Expect = 2e-30
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K I+ GA V+A+ D TPL A V L++ GADPT+ + + +HQAA
Sbjct: 150 KECIAAGADVNAMDCDEN-TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208
Query: 62 FGHTRIVAYLVAK---GINVNLQDRNGMTALMWSAYKVF--SLDPTRLLITFGA------ 110
++ Y++ ++ DRNGMTALM A+ + +LL+ GA
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 111 --STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
+ G ALH+A +++ I LV S+ + + G TP ML
Sbjct: 269 AARKDSEKY-KGRTALHYAAQ-VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Score = 115 bits (291), Expect = 6e-28
Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 28/182 (15%)
Query: 1 MKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQH--------GADPTLMDSE 51
+ + I+D T LHW + LI H GAD MD +
Sbjct: 109 TEPITRESVNIIDPRHNR---TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI---TF 108
+T + A R+VAYL+ G + + +++ +AL +A ++
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKL 224
Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITT---LVSH--------TSSLEIPNAQGLTPF 157
D+ +G AL + + + + LV + + +G T
Sbjct: 225 KGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 158 ML 159
Sbjct: 284 HY 285
Score = 115 bits (291), Expect = 7e-28
Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ + I + LH G + + + T +H A
Sbjct: 78 DFNHTNLQIPTEPEPE-SPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIAS 134
Query: 62 FGHTRIV--------AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT 113
+A G +VN D + T LM + L+ GA T
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPT 193
Query: 114 IQDKIHGNVALHWAIYAKNHVAITT-LVSHTSS---LEIPNAQGLTPFML 159
I +K ALH A + +++ T +E + G+T M+
Sbjct: 194 IYNK-SERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241
Score = 111 bits (281), Expect = 1e-26
Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 20/158 (12%)
Query: 1 MKYFISQ---GAIVDAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLM------ 48
M Y ++ ++ + + T L D V LL++ GA
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGM-TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273
Query: 49 --DSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 105
+G T +H AAQ + IV YLV KG N + QD +G T +M +A + ++ L
Sbjct: 274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG-RIEVVMYL 332
Query: 106 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
I GAS D + A A NH I
Sbjct: 333 IQQGASVEAVDA-TDHTARQLAQA-NNHHNIVDIFDRC 368
Score = 105 bits (263), Expect = 2e-24
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 2 KYFISQGAIVDAIGGDLQA-------TPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGS 53
K + +GA VD G + T LH+A + ++ V L+ + G++ D +G
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314
Query: 54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
T I AAQ G +V YL+ +G +V D TA + + +
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN-NHHNIVDIFDRCRP 370
Score = 104 bits (261), Expect = 5e-24
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 532 VEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATP 582
VE G V+ + T LH+AA + + I+KY + + G+ D D + TP
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TP 316
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
+ A ++G ++ V+ LIQ GA +D+ T A H IV
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 93.9 bits (234), Expect = 1e-20
Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 23/148 (15%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
L A+ G++ +QH Q G+ + +
Sbjct: 39 HSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+ L A S T + + I D H LHW + + L
Sbjct: 90 PEPESPIKLHTEAAG--SYAITEPITRESVN--IIDPRHNRTVLHWIAS-NSSAEKSEDL 144
Query: 140 VSHTSSLEI-----PNAQ---GLTPFML 159
+ H + I NA TP ML
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLML 172
Score = 77.3 bits (191), Expect = 3e-15
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 2 KYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
KY + + G+ D D + TP+ A ++G ++ V+ LIQ GA +D+ T A
Sbjct: 296 KYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354
Query: 61 QFGHTRIVAYLVAKGINV 78
H IV
Sbjct: 355 ANNHHNIVDIFDRCRPER 372
Score = 47.3 bits (113), Expect = 1e-05
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD 572
++ G V D+ T A NN I+ F +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 136 bits (345), Expect = 2e-37
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)
Query: 547 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 605
L AA ++ ++ + + DA+ T L G + L++ GA P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASP 61
Query: 606 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 665
+ D+ G++ +H AA+ G + LV G +VN+ D G + + + L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFL 120
Query: 666 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
+ +D G L A+ + + L H
Sbjct: 121 AA-ESDLHRRDA-RGLTPLELALQ-RGAQDLVDILQGH 155
Score = 130 bits (331), Expect = 2e-35
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
+ + T L I + QGA + +P+H A R G LD+
Sbjct: 26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDT 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
+ +L++HGAD + D G+ IH A Q GHT +V++L +++ +D G+T L +
Sbjct: 84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ 142
Query: 655 KVFSLDPTRLLI 666
+ + D +L
Sbjct: 143 R-GAQDLVDILQ 153
Score = 120 bits (303), Expect = 1e-31
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 21 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
L A +G + V LL + P ++ G T + FG T I L+ +G + N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPN 62
Query: 80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 138
+QD +G + + +A LD ++L+ GA + D G + +H A+ + H A+ +
Sbjct: 63 VQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQ-EGHTAVVSF 119
Query: 139 LVSHTSSLEIPNAQGLTPFML 159
L + S L +A+GLTP L
Sbjct: 120 LAAE-SDLHRRDARGLTPLEL 139
Score = 117 bits (297), Expect = 8e-31
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 7/139 (5%)
Query: 5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
+ DA+ T L G + L++ GA P + D+ G++ +H AA+ G
Sbjct: 23 HRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 65 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124
+ LV G +VN+ D G + + + L + +D G L
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAA-ESDLHRRDA-RGLTPL 137
Query: 125 HWAIYAKNHVAITT-LVSH 142
A+ + + L H
Sbjct: 138 ELALQ-RGAQDLVDILQGH 155
Score = 100 bits (251), Expect = 9e-25
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G N D+ + +H AA ++ +K + GA V+ G P+H A ++GH
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGH 113
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
V L +D D+ G T + A Q G +V L
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 82.5 bits (205), Expect = 1e-18
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 52 GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+ AA G + V L+ + ++ + +R G TAL + S L+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59
Query: 111 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
S +QD G +H A + LV H + + +P+ G P L
Sbjct: 60 SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Score = 82.5 bits (205), Expect = 1e-18
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 612 GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+ AA G + V L+ + ++ + +R G TAL + S L+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59
Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
S +QD G +H A + LV H + + +P+ G P L
Sbjct: 60 SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Score = 70.9 bits (175), Expect = 2e-14
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + GA V+ G P+H A ++GH V L +D D+ G T + A Q
Sbjct: 85 KVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142
Query: 62 FGHTRIVAYLV 72
G +V L
Sbjct: 143 RGAQDLVDILQ 153
Score = 40.1 bits (95), Expect = 7e-04
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ 567
A D++ D+ +T L A +++
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 134 bits (340), Expect = 5e-37
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
T LH AA N +E++K + GA V+A + TPLH A R GHL+ V LL++ GAD
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
D G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLL 121
Query: 667 TFGA 670
GA
Sbjct: 122 EAGA 125
Score = 117 bits (295), Expect = 6e-31
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
+D+NG T L +A L+ +LL+ GA +DK +G LH A H+ + L
Sbjct: 64 KDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLL 120
Query: 140 VSH 142
+
Sbjct: 121 LEA 123
Score = 113 bits (286), Expect = 8e-30
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
L+ V LL++ GAD D G T +H AA+ GH +V L+ G
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 112 bits (283), Expect = 2e-29
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + GA V+A + TPLH A R GHL+ V LL++ GAD D G T +H AA+
Sbjct: 19 KLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 125
Score = 78.5 bits (195), Expect = 2e-17
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+DK +G LH A H+ + L+ + + + G TP
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 78.5 bits (195), Expect = 2e-17
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
+DK +G LH A H+ + L+ + + + G TP
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 47.3 bits (114), Expect = 1e-06
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
+EAG DVN D T LH AA N +E++K + GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 46.6 bits (112), Expect = 2e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 84 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 143 TSSLEIPNAQGLTPFML 159
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
Score = 46.6 bits (112), Expect = 2e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 703 TSSLEIPNAQGLTPFML 719
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 131 bits (332), Expect = 4e-36
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
WA N ++ +K ++++G V+ GG PLH+A G L+ + L+ GAD
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGAD 65
Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
D T + A GH V L++KG + ++ +G+TA + +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 116 bits (293), Expect = 8e-31
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
WA + G LD V + G D G +H AA G I+ +L+ KG ++N
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
D++ +T L+ + Y+ + +LL++ GA T++ G A + A+
Sbjct: 69 PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121
Score = 116 bits (293), Expect = 8e-31
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
WA + G LD V + G D G +H AA G I+ +L+ KG ++N
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
D++ +T L+ + Y+ + +LL++ GA T++ G A + A+
Sbjct: 69 PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121
Score = 109 bits (274), Expect = 3e-28
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
K +V G+DVN LH+AA ++EI+++ + +GA ++A TPL A
Sbjct: 24 KD-YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAV 81
Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
+GH+ V LL+ GAD T+ +G T ++
Sbjct: 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 109 bits (274), Expect = 3e-28
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 2 KYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
K ++++G V+ GG PLH+A G L+ + L+ GAD D T + A
Sbjct: 24 KDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
GH V L++KG + ++ +G+TA + +
Sbjct: 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 85.9 bits (214), Expect = 3e-20
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 48 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
+ S A + G V VAKG +VN G L ++A L+ L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61
Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
GA DK H L A+Y + HV+ L+S + + GLT F
Sbjct: 62 KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 85.9 bits (214), Expect = 3e-20
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
+ S A + G V VAKG +VN G L ++A L+ L+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61
Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
GA DK H L A+Y + HV+ L+S + + GLT F
Sbjct: 62 KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 77.1 bits (191), Expect = 5e-17
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
+++ + +GA ++A TPL A +GH+ V LL+ GAD T+ +G T
Sbjct: 56 LEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Query: 61 QFGHTRIV 68
++
Sbjct: 115 NQAIKALL 122
Score = 30.1 bits (69), Expect = 1.1
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMK 562
+ G D + +T +++
Sbjct: 93 LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 131 bits (333), Expect = 5e-36
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
G D + TLLH A+I I ++Y + G+ + G TPLH A GHL
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHL 56
Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
V LL+QH A + + +H AA+ GH IV L++ G + N + G+ + ++
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Query: 653 AYKVFSLDPTRLLITFGASTT 673
+ L +S+
Sbjct: 117 DDES-MKSLLLLPEKNESSSA 136
Score = 118 bits (299), Expect = 2e-31
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 139
+ L +A +D +LL+++GAS + G + + ++ ++ L
Sbjct: 72 TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127
Score = 118 bits (299), Expect = 2e-31
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
T LH A+ +G + SV L+Q+G+DP + D G T +H+A GH ++V L+ VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699
+ L +A +D +LL+++GAS + G + + ++ ++ L
Sbjct: 72 TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127
Score = 109 bits (275), Expect = 4e-28
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G D N D T LH A + +++++ + A+V+ G +PLH A + GH
Sbjct: 30 LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGH 88
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
+D V LL+ +GA ++ G + ++
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Score = 105 bits (264), Expect = 9e-27
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 1 MKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
++Y + G+ + G TPLH A GHL V LL+QH A + + +H
Sbjct: 26 VEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD 82
Query: 59 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT 113
AA+ GH IV L++ G + N + G+ + ++ + L +S+
Sbjct: 83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES-MKSLLLLPEKNESSSA 136
Score = 82.9 bits (206), Expect = 8e-19
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
G DP + G T +H A+ G V YL+ G + N++D G T L + L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58
Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
LL+ A + LH A HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 82.9 bits (206), Expect = 8e-19
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
G DP + G T +H A+ G V YL+ G + N++D G T L + L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 719
LL+ A + LH A HV I L+S+ +S N GL P
Sbjct: 59 VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 40.1 bits (95), Expect = 6e-04
Identities = 2/39 (5%), Positives = 11/39 (28%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
+ G N + + + + + ++ +
Sbjct: 96 LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 129 bits (326), Expect = 5e-35
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G D+ + L AA + + ++ ++ GA V+A TPL+ AT GHL+
Sbjct: 11 GSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEI 62
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
V +L+++GAD +D+ G T +H AA GH I L+ G +VN QD+ G TA S
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 655 KVFSLDPTRLLI 666
+ D +L
Sbjct: 123 N-GNEDLAEILQ 133
Score = 112 bits (284), Expect = 2e-29
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 7 QGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 65
+G+ G DL L A R G D V +L+ +GAD D G T ++ A GH
Sbjct: 2 RGSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60
Query: 66 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
IV L+ G +VN D G T L +A+ L+ +L+ GA QDK G A
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVNAQDK-FGKTAFD 118
Query: 126 WAIYAKNHVAIT-TLVSH 142
+I + + L
Sbjct: 119 ISIG-NGNEDLAEILQKL 135
Score = 104 bits (261), Expect = 3e-26
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ GA V+A TPL+ AT GHL+ V +L+++GAD +D+ G T +H AA
Sbjct: 31 RILMANGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
GH I L+ G +VN QD+ G TA S + D +L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQ 133
Score = 73.6 bits (182), Expect = 1e-15
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++ G DVN D+ T LH AA +EI + + GA V+A + T + G+
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGN 125
Query: 592 LDSVVLLIQH 601
D +L +
Sbjct: 126 EDLAEILQKL 135
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 125 bits (317), Expect = 2e-33
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGAD 604
+ AA+ E +G ++ L + + LI GAD
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFS 658
EG+T Q G I + KG ++ + + + + F
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127
Query: 659 LDPTR------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
+ + G I+DK G AL + + +A+ + +
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176
Score = 110 bits (278), Expect = 5e-28
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNR------IEIMKYFISQGAIVDAIGGDLQATPLHW 585
+ G D+ E TL E+ K F+ +GA + A+ +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFK 120
Query: 586 ATRQGHLDSV-------VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
+D ++ Q G + D G T + + + +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Query: 639 NLQDRN 644
NL++ +
Sbjct: 181 NLKENS 186
Score = 110 bits (276), Expect = 8e-28
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 15/156 (9%)
Query: 1 MKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
+G ++ L + + LI GAD EG+T
Sbjct: 22 FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81
Query: 59 AAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTR------LLI 106
Q G I + KG ++ + + + + F + +
Sbjct: 82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141
Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 142
G I+DK G AL + + +A+ + +
Sbjct: 142 QSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176
Score = 108 bits (271), Expect = 3e-27
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 18/155 (11%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTL---MDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
+ A G + + L + G + + + +I +L+ KG +
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 78 VNLQDRNGMTALMWSAYK-----VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 132
+ + + G T + + ++ + GA T K + + I+
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIF-NY 125
Query: 133 HVAITT--------LVSHTSSLEIPNAQGLTPFML 159
V L I + GLT
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 87.8 bits (218), Expect = 5e-20
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV-------VLLIQHGADPTLMDSEGS 53
K F+ +GA + A+ + +D ++ Q G + D G
Sbjct: 97 CKIFLEKGADITALYKP-YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155
Query: 54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 84
T + + + + NL++ +
Sbjct: 156 TALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 47.7 bits (114), Expect = 3e-06
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
K F ++G + D +T L + + +K +
Sbjct: 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 40.0 bits (94), Expect = 0.001
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 32/105 (30%)
Query: 56 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
+ AA G L KG + + +++
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDV---------------------- 45
Query: 116 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL 160
L + L++ + ++ +G T F L
Sbjct: 46 --------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82
Score = 40.0 bits (94), Expect = 0.001
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 32/105 (30%)
Query: 616 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
+ AA G L KG + + +++
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDV---------------------- 45
Query: 676 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL 720
L + L++ + ++ +G T F L
Sbjct: 46 --------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 121 bits (306), Expect = 1e-32
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
T LH AA N E +K +S+GA V+A D TPLH A + GH + V LL+ GAD
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
+G+T H A + GH IV L AKG +VN +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 109 bits (276), Expect = 1e-28
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
+ ++G T + + +LL GA + + H
Sbjct: 71 RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113
Score = 109 bits (276), Expect = 1e-28
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A + GH + V L+ GAD +G+T +H AA+ GH IV L+AKG +VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
+ ++G T + + +LL GA + + H
Sbjct: 71 RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113
Score = 99.4 bits (249), Expect = 6e-25
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K +S+GA V+A D TPLH A + GH + V LL+ GAD +G+T H A +
Sbjct: 26 KKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTAL 89
GH IV L AKG +VN +
Sbjct: 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 92.8 bits (232), Expect = 1e-22
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+ G DVN + T LH AA N EI+K +++GA V+A D TP H A + GH
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGH 87
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQ 618
+ V LL GAD S H
Sbjct: 88 HEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 82.8 bits (206), Expect = 4e-19
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
G +G+T +H AA+ GH V L++KG +VN + ++G T L +A +
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57
Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
+LL+ GA + K GN H A H I L + + + +
Sbjct: 58 VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111
Score = 82.8 bits (206), Expect = 4e-19
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
G +G+T +H AA+ GH V L++KG +VN + ++G T L +A +
Sbjct: 1 GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57
Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
+LL+ GA + K GN H A H I L + + + +
Sbjct: 58 VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111
Score = 62.0 bits (152), Expect = 8e-12
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
K +++GA V+A D TP H A + GH + V LL GAD S H
Sbjct: 59 KLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 120 bits (303), Expect = 2e-30
Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 50/196 (25%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA----------- 580
+ + T LH A + ++ + GA V A G +
Sbjct: 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149
Query: 581 TPLHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGHTRI---------- 627
PL A L V L+Q+ AD + DS G+T +H + +
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209
Query: 628 ------VAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQDK 677
A L + +R G+T L +A V ++
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-----AYILQREI------- 257
Query: 678 IHGNVALHWAIYAKNH 693
H H A + +H
Sbjct: 258 -HEPECRHAAAH-HHH 271
Score = 119 bits (301), Expect = 3e-30
Identities = 43/240 (17%), Positives = 66/240 (27%), Gaps = 56/240 (23%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMK-------YFISQGAIVDAIGGDLQATPLHWA 586
P + A + + ++ + + + T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 587 T---RQGHLDSVVLLIQHGAD-----------PTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
G D++ LL+ T +G T +H A + + +V LV
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 633 AKGINVNLQDRN--------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQ 675
G +V G L +A L + L+ A + +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QLAIVKFLLQNSWQPADISAR 180
Query: 676 DKIHGNVALHWA-IYAKNHVAITTLV---------------SHTSSLEIPNAQGLTPFML 719
D GN LH A N V T V EI N +GLTP L
Sbjct: 181 DS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Score = 104 bits (262), Expect = 4e-25
Identities = 41/205 (20%), Positives = 60/205 (29%), Gaps = 49/205 (23%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWAT---RQGHLDSVVLLIQHGAD-----------PTL 47
+ + + + T L A G D++ LL+ T
Sbjct: 37 QRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96
Query: 48 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN--------------GMTALMWSA 93
+G T +H A + + +V LV G +V G L +A
Sbjct: 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156
Query: 94 YKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWA-IYAKNHVAITTLV--------- 140
L + L+ A + +D GN LH A N V T V
Sbjct: 157 CTN-QLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214
Query: 141 ------SHTSSLEIPNAQGLTPFML 159
EI N +GLTP L
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLAL 239
Score = 94.5 bits (235), Expect = 2e-21
Identities = 31/169 (18%), Positives = 49/169 (28%), Gaps = 50/169 (29%)
Query: 1 MKYFISQGAIVDA--IGGDLQA-----------TPLHWATRQGHLDSVVLLIQHG---AD 44
+ + GA V A G + PL A L V L+Q+ AD
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176
Query: 45 PTLMDSEGSTCIHQAAQFGHTRI----------------VAYLVAKGINVNLQDRNGMTA 88
+ DS G+T +H + + A L + +R G+T
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236
Query: 89 LMWSAYK----VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
L +A V ++ H H A + +H
Sbjct: 237 LALAASSGKIGVL-----AYILQREI--------HEPECRHAAAH-HHH 271
Score = 80.2 bits (198), Expect = 1e-16
Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 47/204 (23%)
Query: 21 TPLHWATRQGHLDSVVLLIQ-------HGADPTLMDSE-GSTCIHQA---AQFGHTRIVA 69
+ A Q + + L+ D D E G TC+ +A G +A
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 70 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
L+ + G TAL + + ++ LL+ GA
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLVTLLVENGADVQAAANG 133
Query: 118 ------------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTPFMLLE 161
G + L A N +AI L+ ++ +A+ G T L
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192
Query: 162 ENIGAPWLGKATVDKITELKDHYN 185
E TVD + YN
Sbjct: 193 EV------ADNTVDNTKFVTSMYN 210
Score = 57.1 bits (138), Expect = 7e-09
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
+ + + +T L AA + +I ++ Y + + H A H
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP--------ECRHAAAHHHHH 272
Query: 593 D 593
Sbjct: 273 H 273
Score = 55.9 bits (135), Expect = 2e-08
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 22/123 (17%)
Query: 41 HGADPTLMDSEGSTCIHQAAQFGHT-------RIVAYLVAKGINVNLQDR-NGMTALMWS 92
A I A + + + + +D G T L+ +
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 93 AYKVFS--LDPTRLLITFGASTTIQDKI----------HGNVALHWAIYAKNHVAIT-TL 139
+ + D LL+ T + G ALH AI + ++ + L
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLL 120
Query: 140 VSH 142
V +
Sbjct: 121 VEN 123
Score = 31.7 bits (72), Expect = 1.1
Identities = 4/32 (12%), Positives = 6/32 (18%), Gaps = 8/32 (25%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLD 33
Y + + H A H
Sbjct: 250 AYILQREIHEP--------ECRHAAAHHHHHH 273
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 113 bits (286), Expect = 5e-30
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
+ ++ + +G+ + + G L A R G D V +L+ +GAD D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
GST +H AA+ GH +V L+ G +V QD+ G TA S
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Score = 101 bits (255), Expect = 7e-26
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ +G+ + + G L A R G D V +L+ +GAD D GST +H AA+
Sbjct: 11 SGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66
Query: 62 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
GH +V L+ G +V QD+ G TA S
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Score = 100 bits (252), Expect = 2e-25
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
V G + L AA + + ++ ++ GA V A + TPLH A R GH
Sbjct: 14 VPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGH 69
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
L+ V LL++ GAD D G T + G+ + L
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 96.1 bits (240), Expect = 7e-24
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
+ H L+ G+ M S+ + +AA+ G V L+A G +V +D+NG
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
T L +A L+ +LL+ GA QDK G A +I + + ++
Sbjct: 58 STPLHLAARNG-HLEVVKLLLEAGADVXAQDK-FGKTAFDISID-NGNEDLAEIL 109
Score = 75.7 bits (187), Expect = 9e-17
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
+ ++ GA V A + TPLH A R GHL+ V LL++ GAD D G T +
Sbjct: 41 RILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 62 FGHTRIVAYL 71
G+ + L
Sbjct: 100 NGNEDLAEIL 109
Score = 68.4 bits (168), Expect = 4e-14
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 59 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
+ H + LV +G ++ + L+ +A D R+L+ GA +DK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG-QDDEVRILMANGADVAAKDK- 55
Query: 119 HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
+G+ LH A H+ + L+ + + + G T F + +N
Sbjct: 56 NGSTPLHLAAR-NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 118 bits (297), Expect = 7e-30
Identities = 42/215 (19%), Positives = 59/215 (27%), Gaps = 50/215 (23%)
Query: 535 GQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQA----------T 581
S T L A +N + + + A +
Sbjct: 33 TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS 92
Query: 582 PLHWATRQGHLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIV 628
LH A + L V LL+++GAD G + AA +V
Sbjct: 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 629 AYLVAKGI---NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
YL+ ++ D G T L I D N AL
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALV-------------------MIADNSPENSALV 193
Query: 686 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
+Y + + L EI N QGLTP L
Sbjct: 194 IHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Score = 111 bits (278), Expect = 2e-27
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TP 582
+ + + LH A ++ +K + GA V P
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 583 LHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQ----------------AAQFG 623
L A D V L+++ A DS G+T +H G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGAS 671
++ A L + + G+T L +A + +F R ++ S
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF-----RHILQREFS 246
Score = 99.1 bits (247), Expect = 3e-23
Identities = 37/185 (20%), Positives = 52/185 (28%), Gaps = 47/185 (25%)
Query: 2 KYFISQGAIVDAIGGDLQA----------TPLHWATRQGHLDSVVLLIQHGAD------- 44
+ + A + LH A + L V LL+++GAD
Sbjct: 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122
Query: 45 ------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI---NVNLQDRNGMTALMWSAYK 95
G + AA +V YL+ ++ D G T L
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV-- 180
Query: 96 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 154
I D N AL +Y + + L EI N QGL
Sbjct: 181 -----------------MIADNSPENSALVIHMY-DGLLQMGARLCPTVQLEEISNHQGL 222
Query: 155 TPFML 159
TP L
Sbjct: 223 TPLKL 227
Score = 93.7 bits (233), Expect = 2e-21
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 33/140 (23%)
Query: 532 VEAGQDVNEPDSETVTL-------------LHWAAINNRIEIMKYFISQG---------- 568
VE G DV+ L AA + +++ Y +
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Query: 569 ---------AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
++ A + L G L L + + +G T + A
Sbjct: 170 SLGNTVLHALVMIADNSPEN-SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228
Query: 620 AQFGHTRIVAYLVAKGINVN 639
A+ G I +++ + +
Sbjct: 229 AKEGKIEIFRHILQREFSGA 248
Score = 87.2 bits (216), Expect = 4e-19
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 40/146 (27%)
Query: 1 MKYFISQGAIVDAIGGDLQA------------TPLHWATRQGHLDSVVLLIQHG---ADP 45
+K + GA V PL A D V L+++ A
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165
Query: 46 TLMDSEGSTCIHQ----------------AAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
DS G+T +H G ++ A L + + G+T L
Sbjct: 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225
Query: 90 MWSAYK----VFSLDPTRLLITFGAS 111
+A + +F R ++ S
Sbjct: 226 KLAAKEGKIEIF-----RHILQREFS 246
Score = 72.9 bits (179), Expect = 3e-14
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
+ L G L L + + +G T + AA+ G I +++ + +
Sbjct: 190 SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 64.4 bits (157), Expect = 2e-11
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)
Query: 21 TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 69
L +G + + L+++ S G TC+ +A Q G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 70 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
L+ + G +AL + K SL +LL+ GA ++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122
Query: 118 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 156
G + L A + T L+ + A G T
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Score = 64.4 bits (157), Expect = 2e-11
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)
Query: 581 TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 629
L +G + + L+++ S G TC+ +A Q G +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 630 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 677
L+ + G +AL + K SL +LL+ GA ++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122
Query: 678 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 716
G + L A + T L+ + A G T
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Score = 44.4 bits (105), Expect = 9e-05
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 574
Q + + +T L AA +IEI ++ + + A
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 106 bits (267), Expect = 1e-27
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
T LH AA N +E++K + GA V+A + + TPLH A R GHL+ V LL++ GAD
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
D G T +H AA+ GH +V L+ G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 101 bits (254), Expect = 7e-26
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 81 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
+D+NG T L +A L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92
Score = 101 bits (254), Expect = 7e-26
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
TPLH A R GHL+ V LL++ GAD D G T +H AA+ GH +V L+ G +VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
+D+NG T L +A L+ +LL+ GA
Sbjct: 64 KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92
Score = 84.7 bits (211), Expect = 4e-20
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K + GA V+A + + TPLH A R GHL+ V LL++ GAD D G T +H AA+
Sbjct: 19 KLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Query: 62 FGHTRIVAYLVAKG 75
GH +V L+ G
Sbjct: 78 NGHLEVVKLLLEAG 91
Score = 82.8 bits (206), Expect = 2e-19
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
+EAG DVN D T LH AA N +E++K + GA V+A + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 592 LDSVVLLIQHGA 603
L+ V LL++ GA
Sbjct: 81 LEVVKLLLEAGA 92
Score = 75.1 bits (186), Expect = 1e-16
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
+DK +G LH A H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90
Score = 75.1 bits (186), Expect = 1e-16
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
G T +H AA+ GH +V L+ G +VN +D+NG T L +A L+ +LL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60
Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
+DK +G LH A H+ + L+
Sbjct: 61 VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90
Score = 52.0 bits (126), Expect = 1e-08
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
+K + GA V+A + + TPLH A R GHL+ V LL++ GA
Sbjct: 51 VKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 92
Score = 46.2 bits (111), Expect = 2e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 84 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 143 TSSLEIPNAQGLTPFML 159
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
Score = 46.2 bits (111), Expect = 2e-06
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
NG T L +A L+ +LL+ GA +DK +G LH A H+ + L+
Sbjct: 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57
Query: 703 TSSLEIPNAQGLTPFML 719
+ + + G TP L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 111 bits (279), Expect = 7e-27
Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 22/206 (10%)
Query: 531 FVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
F ++N P D T LHW +E++K+ + G+ G ++ + L A +
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKS 174
Query: 590 GHLDSV----VLLIQHGADPTLMDSEGSTCIHQAAQFGHTR------------IVAYLVA 633
+ LL L DS T +H ++ ++V
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 634 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL---ITFGASTTIQDKIHGNVALHWAIYA 690
K N + L QD +G+ L+ A
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARL 293
Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTP 716
N + L+ + + I N GL P
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRP 319
Score = 110 bits (277), Expect = 1e-26
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 19/204 (9%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
+ N + + ++ + E+ F + ++ + TPLHW T +L+
Sbjct: 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGI-NVNLQDRNGMTAL 649
V L++HG++ D+ G +C+ +A + + + L+ + L+D T L
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Query: 650 MWSAYKVFSLDPTR-----------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 698
+ ++ + + +
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265
Query: 699 LVSHTSSLEIPNAQ---GLTPFML 719
L + NAQ G T +
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNI 289
Score = 100 bits (250), Expect = 4e-23
Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 9/225 (4%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
+ NE + L E+ + + ++ GG H + +
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112
Query: 595 VVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
+ +D G+T +H + +V +LV G N D G + L+ +
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172
Query: 654 YKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKN----HVAITTLVSHTSSL 706
V + D LL ++D LH I A +
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231
Query: 707 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNII 751
+ E+ D I E D N++
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276
Score = 97.4 bits (242), Expect = 4e-22
Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 18/176 (10%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
F + ++ + TPLHW T +L+ V L++HG++ D+ G +C+ +A +
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Query: 62 FGH---TRIVAYLVAKGI-NVNLQDRNGMTALMWSAYKVFSLDPTR-----------LLI 106
+ + L+ + L+D T L + ++
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ---GLTPFML 159
+ + + L + NAQ G T +
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289
Score = 87.8 bits (217), Expect = 9e-19
Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 9/195 (4%)
Query: 5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP-TLMDSEGSTCIHQAAQFG 63
+ + ++ GG H + + + +D G+T +H
Sbjct: 83 NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP---TRLLITFGASTTIQDKIHG 120
+ +V +LV G N D G + L+ + V + D LL ++D
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MN 201
Query: 121 NVALHWAIYAKN----HVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK 176
LH I A + + E+ D
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261
Query: 177 ITELKDHYNTQQNII 191
I E D N++
Sbjct: 262 ILENLDLKWIIANML 276
Score = 81.6 bits (201), Expect = 9e-17
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 535 GQDVNEPDSETVTLLHWAAINNR-----------IEIMKYFISQGAIVDAIGGDLQATPL 583
+ DS T+LH I + ++I+ +I + G +
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 584 HWATRQGHLDSVVLLIQHGADPTLM----DSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
DS++ + M DS G TC++ AA+ G+ IV L+ G +
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 640 LQDRNGMTALMWSA 653
+ +++G+ + + A
Sbjct: 311 IANKSGLRPVDFGA 324
Score = 78.5 bits (193), Expect = 8e-16
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 21/175 (12%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV----VLLIQHGADPTLMDSEGSTCI 56
+K+ + G+ G ++ + L A + + LL L DS T +
Sbjct: 147 VKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Query: 57 HQAAQFGHTR------------IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
H ++ ++V K N +
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265
Query: 105 L---ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
L QD +G+ L+ A N + L+ + + I N GL P
Sbjct: 266 LDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319
Score = 68.1 bits (166), Expect = 3e-12
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNR----IEIMKYFISQGAIVDA--IGGDLQATPLHW 585
V+ + + R +E + +++A GD T L+
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD---TCLNI 289
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621
A R G++ V L+ +GADP + + G + A
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 66.6 bits (162), Expect = 7e-12
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM----DSEGSTCIHQA 59
+I + G + DS++ + M DS G TC++ A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290
Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93
A+ G+ IV L+ G + + +++G+ + + A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 60.0 bits (145), Expect = 1e-09
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
T L+ A R G++ V L+ +GADP + + G + A
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 107 bits (270), Expect = 4e-26
Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 56/227 (24%)
Query: 547 TLLHWAAINNRIE----IMKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVV 596
+L + ++ + ++ + + T L A G D++
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 597 LLIQHGADPTLM-----------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN- 644
+L+ M G T +H A + V LV KG +V+ Q R
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 645 -------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAI 688
G L +A L G A QD GN LH +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALV 184
Query: 689 YAKNHVAITT---------LVSH-------TSSLEIPNAQGLTPFML 719
++ T L+ T+ + N GL+P M+
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Score = 102 bits (256), Expect = 2e-24
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 33/167 (19%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA-----------TPL 583
+ T LH A ++ + +GA V A G Q PL
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 584 HWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGH---------TRIVAYL 631
A V L ++G AD DS G+T +H T++ L
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204
Query: 632 VAKGINVN-------LQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
+ K + L + +G++ LM +A + + +I +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIA 250
Score = 99.1 bits (247), Expect = 3e-23
Identities = 39/209 (18%), Positives = 62/209 (29%), Gaps = 52/209 (24%)
Query: 1 MKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVVLLIQHGADPTLM------ 48
+ + ++ + + T L A G D++ +L+ M
Sbjct: 25 LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84
Query: 49 -----DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN--------------GMTAL 89
G T +H A + V LV KG +V+ Q R G L
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 90 MWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAIYAKNHVAITT-------- 138
+A L G A QD GN LH + ++ T
Sbjct: 145 SLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 139 -LVSH-------TSSLEIPNAQGLTPFML 159
L+ T+ + N GL+P M+
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Score = 79.1 bits (195), Expect = 2e-16
Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 34/141 (24%)
Query: 532 VEAGQDVNEPDSETV--------------TLLHWAAINNRIEIMKYFISQG---AIVDAI 574
VE G DV+ L AA N+ I+ Y G A +
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172
Query: 575 GGDLQATPLHWATRQGH---------LDSVVLLIQHGAD-------PTLMDSEGSTCIHQ 618
T LH LL+ A L++++G + +
Sbjct: 173 DSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Query: 619 AAQFGHTRIVAYLVAKGINVN 639
AA+ G I +++ + I
Sbjct: 232 AAKTGKIGIFQHIIRREIADA 252
Score = 77.5 bits (191), Expect = 7e-16
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 33/142 (23%)
Query: 2 KYFISQGAIVDA--IGGDLQA-----------TPLHWATRQGHLDSVVLLIQHG---ADP 45
+ + +GA V A G Q PL A V L ++G AD
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL 169
Query: 46 TLMDSEGSTCIHQAAQFGH---------TRIVAYLVAKGINVN-------LQDRNGMTAL 89
DS G+T +H T++ L+ K + L + +G++ L
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229
Query: 90 MWSAYKVFSLDPTRLLITFGAS 111
M +A + + +I +
Sbjct: 230 MMAAKT-GKIGIFQHIIRREIA 250
Score = 71.7 bits (176), Expect = 7e-14
Identities = 32/179 (17%), Positives = 48/179 (26%), Gaps = 41/179 (22%)
Query: 21 TPLHWATRQGH---LDSVV-LLIQHGADPTLMD----SEGSTCIHQAA---QFGHTRIVA 69
L +G L+ ++ L+ H T + S G TC+ +A G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 70 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
L+ G TAL + + LL+ GA Q +
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQARG 125
Query: 118 ------------IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQ---GLTPFMLL 160
G + L A N I L + Q G T L
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183
Score = 54.4 bits (131), Expect = 4e-08
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 20/97 (20%)
Query: 2 KYFISQG---AIVDAIGGDLQATPLHWATRQGH---------LDSVVLLIQHGAD----- 44
Y G A + T LH LL+ A
Sbjct: 157 HYLTENGHKQADLRRQDSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 45 --PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
L++++G + + AA+ G I +++ + I
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 50.9 bits (122), Expect = 6e-07
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 21/135 (15%)
Query: 54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDR----NGMTALMWSAYKVFS--LDPTRLLIT 107
+ + + G ++++L+ + ++ G T L + + + D +L+
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70
Query: 108 FGASTTIQDKI----------HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
T + G ALH AI + LV + +AQ
Sbjct: 71 IAEKTGNMREFINSPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGAD---VHAQARGR 126
Query: 157 FMLLEENIGAPWLGK 171
F ++ G + G+
Sbjct: 127 FFQPKDEGGYFYFGE 141
Score = 42.1 bits (99), Expect = 5e-04
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 532 VEAGQDVNEPDSETV-------TLLHWAAINNRIEIMKYFISQGAIVDA 573
+ + + + L AA +I I ++ I + A
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 102 bits (256), Expect = 2e-23
Identities = 26/213 (12%), Positives = 51/213 (23%), Gaps = 27/213 (12%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---TPLHWATR 588
+ + + V +E AA N + ++ +QA A
Sbjct: 115 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM--AMIQAENYHAFRLAAE 172
Query: 589 QGHLDSVVLLIQHGADPTLMD--SEGSTCIHQAA-QFGHTRIVAYLVAKGINVNLQDRNG 645
GHL + L + +E AA GH ++ +L+ + + + +
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH-----------GNVALHWAIYAKNHV 694
+ RL A G L I + V
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292
Query: 695 AITTL--------VSHTSSLEIPNAQGLTPFML 719
+ + + + L
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325
Score = 93.5 bits (232), Expect = 2e-20
Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
+ E V L + K S + LD++ LL+
Sbjct: 59 NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTS 117
Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK---- 655
++ +E AA+ GH ++ L + A +A
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177
Query: 656 VFSLDPTRLLITFGASTTIQD-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 710
V L + + A WA + H + L+ L
Sbjct: 178 V-----LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229
Score = 90.4 bits (224), Expect = 2e-19
Identities = 28/218 (12%), Positives = 51/218 (23%), Gaps = 40/218 (18%)
Query: 528 KYQFVEAGQDVNEPDSET--VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLH 584
E + AA N + ++ +
Sbjct: 145 NR-LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203
Query: 585 W-ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN---- 639
W A +GH + + L+ + ++G + ++ +
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVNPFIARHVNRLKEMHD 256
Query: 640 ----------------LQDRNGMTALMWSAYK--VFSLDPTRLLITF-----GASTTIQD 676
+ G L + LD R L++ A T
Sbjct: 257 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316
Query: 677 KIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 714
N L A+ N A L+S S L + A
Sbjct: 317 G-DANELLRLALRLGNQGACALLLSIPSVLALTKANNY 353
Score = 90.0 bits (223), Expect = 2e-19
Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 14/157 (8%)
Query: 2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
K S + LD++ LL+ ++ +E AA+
Sbjct: 79 KQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137
Query: 62 FGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQ 115
GH ++ L + A +A V L +
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV-----LNRLCELAPTEATA 192
Query: 116 D-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 150
+ A WA + H + L+ L
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229
Score = 69.6 bits (170), Expect = 1e-12
Identities = 24/182 (13%), Positives = 43/182 (23%), Gaps = 37/182 (20%)
Query: 2 KYFISQGAIVDAIGGDLQ-ATPLHW-ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+ W A +GH + + L+ +
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IHE 232
Query: 60 AQFGHTRIVAYLVAKGINVN--------------------LQDRNGMTALMWSAYK--VF 97
++G + ++ + + G L +
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292
Query: 98 SLDPTRLLITF-----GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 152
LD R L++ A T N L A+ N A L+S S L + A
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGACALLLSIPSVLALTKAN 351
Query: 153 GL 154
Sbjct: 352 NY 353
Score = 68.0 bits (166), Expect = 4e-12
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 539 NEPDSETVTLLHWAAINN---RIEIMKYFIS-----QGAIVDAIGGDLQATPLHWATRQG 590
+ +L N ++ +++ +S A I GD L A R G
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLG 330
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
+ + LL+ + L + + G + A +
Sbjct: 331 NQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVAL 369
Score = 64.6 bits (157), Expect = 4e-11
Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 9/151 (5%)
Query: 15 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI-HQAAQFGHTRIVAYLVA 73
+++ H + + A + SE + + L+
Sbjct: 57 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT 116
Query: 74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK-IHGNVALHWAIYAKN 132
V + A +A L L + + A A A+N
Sbjct: 117 SDEIVKVIQAENYQAFRLAAENGH-LHVLNRLCELAPTEIMAMIQAENYHAFRLA--AEN 173
Query: 133 -HVAITT-LVSHTSSLEIPN--AQGLTPFML 159
H+ + L + A+ F
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRW 204
Score = 63.8 bits (155), Expect = 9e-11
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
++A + LL A +S +++ +A + G
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT----KANNYYINETGGR 361
Query: 592 LDSVVLLIQHGA 603
LD + ++H
Sbjct: 362 LDLRAVALEHHH 373
Score = 47.6 bits (113), Expect = 1e-05
Identities = 10/168 (5%), Positives = 32/168 (19%), Gaps = 44/168 (26%)
Query: 1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS---------- 50
+ + + ++ G + +H M
Sbjct: 215 INFLLDCPVMLAY--------AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 266
Query: 51 ----------EGSTCIHQAAQFGHTRIVAYL--------VAKGINVNLQDRNGMTALMWS 92
+G + + ++ + + + L +
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326
Query: 93 AYKVFSLDPTRLLITFGASTTIQDK-------IHGNVALHWAIYAKNH 133
LL++ + + G + L +H
Sbjct: 327 LRLGN-QGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHH 373
Score = 39.5 bits (92), Expect = 0.004
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
L S + + + N ++ + L ++ Y + L
Sbjct: 29 LFQHFISANELSLMTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRN----AKQLW 82
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
+ I+ ++ VA + + L++ +++ A+ F L
Sbjct: 83 SDAHKKGIKSEVICFVAAITG--CSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 78.3 bits (192), Expect = 2e-15
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 548 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPT 606
L + + M ++ GA V+ + G TPL AT L + L+Q+GA+
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
DS G +H A GHT + + +G ++ +D G L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Score = 74.8 bits (183), Expect = 2e-14
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 5 ISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
++ GA V+ + G TPL AT L + L+Q+GA+ DS G +H A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 64 HTRIVAYLVAKGINVNLQDRNGMTAL 89
HT + + +G ++ +D G L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPL 305
Score = 68.7 bits (167), Expect = 2e-12
Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 4/146 (2%)
Query: 520 TEPTSLSDKYQFVEAGQDVNEPDSETV--TLLHWAAINNRIEIMKYFISQGAIVDAIGGD 577
P SL + G DVN + T L A N + ++ + GA V+
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGI 636
PLH AT GH L ++ GAD DSEG + A + + IV L AK
Sbjct: 268 -GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPT 662
++ FSL +
Sbjct: 327 EAEAAQGQAGDETYLDIFRDFSLMAS 352
Score = 63.3 bits (153), Expect = 1e-10
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 74
A + L ++ + HGAD ++ + +T + QA +L+
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
G NVN D G L + + L + GA +D G L A+ +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHT-GLACLFLKRGADLGARDS-EGRDPLTIAM-ETANA 314
Query: 135 AITTLVSHTSSLEIPNAQGLTP 156
I TL+ E AQG
Sbjct: 315 DIVTLLRLAKMREAEAAQGQAG 336
Score = 56.7 bits (136), Expect = 1e-08
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVN 79
PLH AT GH L ++ GAD DSEG + A + + IV L AK
Sbjct: 270 GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE 329
Query: 80 LQDRNGMTALMWSAYKVFSLDPT 102
++ FSL +
Sbjct: 330 AAQGQAGDETYLDIFRDFSLMAS 352
Score = 51.3 bits (122), Expect = 8e-07
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 37/149 (24%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 634
A + L ++ + HGAD ++ + +T + QA +L+
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
G NVN D G L H A +
Sbjct: 258 GANVNQADSAGRGPL-----------------------------------HHATILGHTG 282
Query: 695 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
+ + L +++G P + E
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMET 311
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 73.9 bits (181), Expect = 2e-14
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 520 TEPTSLSDKYQFVEA---GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-----IV 571
+ + + + ++ A + L A N + + + G +
Sbjct: 123 SAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP 182
Query: 572 DAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
+ LH A + + S+ +IQ+G ++G+T +H AA + +
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242
Query: 629 AYLVAKGINVNLQDRNGMTAL 649
L+ V + G TAL
Sbjct: 243 KLLLKGRALVGTVNEAGETAL 263
Score = 71.2 bits (174), Expect = 2e-13
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 21 TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
LH A + + S+ +IQ+G ++G+T +H AA + + L+
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 78 VNLQDRNGMTAL 89
V + G TAL
Sbjct: 252 VGTVNEAGETAL 263
Score = 64.6 bits (157), Expect = 3e-11
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 535 GQDVNEPDSETV------TLLHWA---AINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 585
GQD +P +LH A A + ++ + I G +DA D T LH+
Sbjct: 174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHY 232
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
A D + LL++ A ++ G T + A + H L
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 58.8 bits (142), Expect = 2e-09
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
T LH+A D + LL++ A ++ G T + A + H L
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 53.8 bits (129), Expect = 1e-07
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
G ++ ++ T LH+AA+ N+ + +K + A+V + + T L A ++ H +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKEC 274
Query: 595 VVLLIQHGADPTLMDSEGSTCIH 617
LL Q A + +H
Sbjct: 275 EELLEQAQAG------TFAFPLH 291
Score = 48.4 bits (115), Expect = 5e-06
Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)
Query: 26 ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 76
A L SV+ +G D + +H A + + +V +++ G
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
+++ + +G TAL H+A +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242
Query: 137 TTLVSHTSSLEIPNAQGLTPFMLLEEN 163
L+ + + N G T + +
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269
Score = 48.4 bits (115), Expect = 5e-06
Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)
Query: 586 ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 636
A L SV+ +G D + +H A + + +V +++ G
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
+++ + +G TAL H+A +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242
Query: 697 TTLVSHTSSLEIPNAQGLTPFMLLEEN 723
L+ + + N G T + +
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 72.0 bits (176), Expect = 8e-14
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 527 DKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-----IVDAIGGDLQAT 581
KY + + + + L A I + + G I A G + T
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDET 171
Query: 582 PLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
LH A R L V L+Q+ + +GST +H + + L+ ++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 688
+ + +G T L + L H +V W +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277
Score = 67.3 bits (164), Expect = 3e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 21 TPLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
T LH A R L V L+Q+ + +GST +H + + L+ +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 78 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 128
+ + + +G T L + L H +V W +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277
Score = 44.6 bits (105), Expect = 8e-05
Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)
Query: 24 HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 74
A + + ++ G D T T +H A + IV +LV
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
N++ Q G TAL H+ N
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219
Query: 135 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
+ L+ +S+EI N G TP + +
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248
Score = 44.6 bits (105), Expect = 8e-05
Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)
Query: 584 HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 634
A + + ++ G D T T +H A + IV +LV
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
N++ Q G TAL H+ N
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219
Query: 695 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
+ L+ +S+EI N G TP + +
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 61.1 bits (148), Expect = 1e-09
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 21 TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
LH A + + S+ +IQ+G ++G+T +H AA + + L+
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 78 VNLQDRNGMTALMWS 92
V + G TAL +
Sbjct: 233 VGTVNEAGETALDIA 247
Score = 61.1 bits (148), Expect = 1e-09
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 581 TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
LH A + + S+ +IQ+G ++G+T +H AA + + L+
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 638 VNLQDRNGMTALMWS 652
V + G TAL +
Sbjct: 233 VGTVNEAGETALDIA 247
Score = 50.3 bits (120), Expect = 2e-06
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 22/112 (19%)
Query: 535 GQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDAI---GGDLQA----- 580
GQD +P +LH A + +VD I GG L A
Sbjct: 155 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-------PLVDFIIQNGGHLDAKAADG 207
Query: 581 -TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
T LH+A D + LL++ A ++ G T + A + H L
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 46.0 bits (109), Expect = 4e-05
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 9 AIVDAI---GGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
+VD I GG L A T LH+A D + LL++ A ++ G T + A
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Query: 60 AQFGHTRIVAYL 71
+ H L
Sbjct: 248 RKKHHKECEELL 259
Score = 42.6 bits (100), Expect = 5e-04
Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)
Query: 23 LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
L A L SV+ +G D + +H A + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185
Query: 77 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
SL +I G + GN ALH+A +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223
Query: 137 TTLVSHTSSLEIPNAQGLTPFMLLEEN 163
L+ + + N G T + +
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250
Score = 42.6 bits (100), Expect = 5e-04
Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
L A L SV+ +G D + +H A + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185
Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
SL +I G + GN ALH+A +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223
Query: 697 TTLVSHTSSLEIPNAQGLTPFMLLEEN 723
L+ + + N G T + +
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-04
Identities = 78/443 (17%), Positives = 131/443 (29%), Gaps = 147/443 (33%)
Query: 26 ATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQ-AAQFGHTR----------IVAYLVA 73
++ G D V+ L + + L ++ IH AA+ I Y+ A
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGND----IHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW----AIY 129
+ + D+ +AL + + +L+ FG Q GN ++ +Y
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGE----GNAQLVAIFGG----Q----GNTDDYFEELRDLY 177
Query: 130 AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQN 189
HV + L+ ++ L E L + T+D + + N
Sbjct: 178 QTYHVLVGDLIKFSAET-------------LSE------LIRTTLDA----EKVFTQGLN 214
Query: 190 IIHRFSKSKTTRARYMFALPFVMFGLIGFIFQ-AQIAYMAKLA------LFISLY----- 237
I+ T + + LIG + Q A AKL L L
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 238 ----IVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-------TPVVNFFVSL 286
+ I E F K IT LF+I P + S+
Sbjct: 274 SQGLVTAVAIAETDSWESFFVS-------VRK---AITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 287 LFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIR 346
L S +G P +P L+ L ++ ++
Sbjct: 324 LEDSLENN---------EGVP----SPM---------LSISN-----------LTQEQVQ 350
Query: 347 SKHCSICNRCVAKFDH-HCPWVGNCIGAKNHKYFV--GYISSLLFMCCFVLYGIAKYW-K 402
+ + N + + GAKN V G S LYG+ K
Sbjct: 351 -DYVNKTNSHLPAGKQVE---ISLVNGAKN---LVVSGPPQS--------LYGLNLTLRK 395
Query: 403 SKC-----QFQLSH-EREVMFVV 419
+K Q ++ ER++ F
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSN 418
Score = 43.9 bits (103), Expect = 3e-04
Identities = 65/365 (17%), Positives = 106/365 (29%), Gaps = 112/365 (30%)
Query: 520 TEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMK-YFI-SQGAIVDAIGGD 577
T P +LS + +E V P T + A ++ F + D
Sbjct: 6 TRPLTLS--HGSLEHVLLV--P-----TASFFIA-----SQLQEQFNKILPEPTEGFAAD 51
Query: 578 LQ-ATPLHWATR-------------QGHLDSVV-LLIQHGADPTLMDSEGSTCIHQ-AAQ 621
+ TP + G D V+ L + + L ++ IH AA+
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----IHALAAK 107
Query: 622 FGHTR----------IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
I Y+ A+ + D+ +AL + + +L+ FG
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE----GNAQLVAIFGG- 162
Query: 672 TTIQDKIHGNVALHW----AIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP 727
Q GN ++ +Y HV + L+ ++ L E
Sbjct: 163 ---Q----GNTDDYFEELRDLYQTYHVLVGDLIKFSAET-------------LSE----- 197
Query: 728 WLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQ-AQIAY 786
L + T+D + + NI+ T + + LIG + Q A
Sbjct: 198 -LIRTTLDA----EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAHYVV 251
Query: 787 MAKLA------LFISLY---------IVMQVIGTVMFDERLFKILPLPVYFATKFWIYIT 831
AKL L L + I E F K IT
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-------VRK---AIT 301
Query: 832 WLFWI 836
LF+I
Sbjct: 302 VLFFI 306
Score = 40.8 bits (95), Expect = 0.003
Identities = 97/643 (15%), Positives = 169/643 (26%), Gaps = 233/643 (36%)
Query: 109 GAST---TIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGL-------TPF 157
ST T+ HG++ + + + L L P +G TP
Sbjct: 3 AYSTRPLTLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEP-TEGFAADDEPTTPA 58
Query: 158 MLLEENIG--APWLGKATVDKITE-LK---DHYNT---QQNIIHRFSKSKTTRARYMFAL 208
L+ + +G + + + V + + L + + N IH +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND---TT 115
Query: 209 PFVMFGLIGFIFQAQIAYMAKL------ALF-------ISLYIVM--QVIGTVM--FDE- 250
LI A+I ALF L + Q G F+E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFEEL 173
Query: 251 -RLFKILPLPVYFATKFWIYITWL-FWITPVVNFFVSLLFFSTSGVLWYNF---IKCWKG 305
L++ Y + I L+ + + I W
Sbjct: 174 RDLYQ-------------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 306 DPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCP 365
+P P + I P+S P+ I V + H+
Sbjct: 221 NPS--NTPDKDYLLSI----------PISC--------PL------I---GVIQLAHYVV 251
Query: 366 WVGNCIGAKNHKYFVGYISSLLFMCCFVLYGI--------AKYWKSKCQFQLSHER--EV 415
+G Y+ G+ W+S F +S + V
Sbjct: 252 -TAKLLG-FTPGELRSYLKGAT----GHSQGLVTAVAIAETDSWES---FFVSVRKAITV 302
Query: 416 MFVVWDMLQCDGWVGFILLNAF-VHAIWITVL--------------LSC------QLYQI 454
+F ++G A+ ++ ++L LS Q+
Sbjct: 303 LF----------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 455 ISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMK 514
++ TN + A + I+ +N V +G P
Sbjct: 353 VN---KTNSHLPAGK-QVEISL----VNGA------KNLV-VSG--------P------- 382
Query: 515 RYEVYTEPTSLSDKYQFV--------EAGQDVNE-PDSETVTLLHWAAINNR-IEIMKYF 564
P SL Y +G D + P SE R ++ F
Sbjct: 383 -------PQSL---YGLNLTLRKAKAPSGLDQSRIPFSE------------RKLKFSNRF 420
Query: 565 --IS--------QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD---------P 605
++ A D I DL + + + + V G+D
Sbjct: 421 LPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDLRVLSGSISE 477
Query: 606 TLMDSEGSTCIH--QAAQFGHTRIVAY--LVAKGINVNLQDRN 644
++D + QF T I+ + A G+ L RN
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG-VLTHRN 519
Score = 39.3 bits (91), Expect = 0.007
Identities = 95/539 (17%), Positives = 167/539 (30%), Gaps = 173/539 (32%)
Query: 379 FVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFV 438
F+GY+SSL+ ++ +V+ + + L +
Sbjct: 64 FLGYVSSLV-----------------EPSKVGQFDQVLNLCLTEFENC-----YLEGNDI 101
Query: 439 HAIWITVLLSCQLYQIISLGMTTNERMNANRYH--HFIANPQGQFISPFHRGRLQNFVDF 496
HA L+ +L Q + + + N P L V
Sbjct: 102 HA------LAAKLLQENDTTLVKTKELIKNYITARIMAKRP----FDKKSNSALFRAVGE 151
Query: 497 TGWSCFGLF----KPERIDWMK----RYEVYTEPTSLSDK--------YQFVEAGQDVNE 540
+F + D+ + Y+ Y + D + + D +
Sbjct: 152 GNAQLVAIFGGQGNTD--DYFEELRDLYQTY--HVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 541 PDSETVTLLHWAAINNRIEI--MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
++ + +L W + N Y +S + + PL + H VV
Sbjct: 208 VFTQGLNILEW--LENPSNTPDKDYLLS--IPI--------SCPLIGVIQLAHY--VVTA 253
Query: 599 IQHGADPTLMDS--EGSTCIHQAAQFGHTR--IVAYLVAKGI---NVNLQDRNGMTALMW 651
G P + S +G+T GH++ + A +A+ + + R +T L +
Sbjct: 254 KLLGFTPGELRSYLKGAT--------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 652 ------SAYKVFSLDPTR---------------LLITFGAS-TTIQDKI-----HGNVAL 684
AY SL P+ L I+ + +QD + H
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGK 364
Query: 685 HWAIY----AKNHVAITTLVS-HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 739
I AKN V VS SL GL L AP + +D
Sbjct: 365 QVEISLVNGAKNLV-----VSGPPQSL-----YGLN---LTLRKAKAP----SGLD---- 403
Query: 740 LKDHYNTQQNIIHRFSKSK-TTRARY--MFALPF---VMFGLIGFIFQ----AQIAYMAK 789
Q I FS+ K R+ + + PF ++ I + +++ AK
Sbjct: 404 -------QSRI--PFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 790 LALFISLYIV-----MQVIGTVMFDERLFK-ILPLPVYFATKFWIYITWLFWITPVVNF 842
+ I +Y ++V+ ER+ I+ LPV W T F T +++F
Sbjct: 454 -DIQIPVYDTFDGSDLRVLSG-SISERIVDCIIRLPVK-----WETTT-QFKATHILDF 504
Score = 31.2 bits (70), Expect = 2.3
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 485 FHRGRL-QNFV--DFTGWSCFGLF--KPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVN 539
F+RG Q V D G S +G+ P R+ S S EA Q V
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-----------ASFSQ-----EALQYVV 1830
Query: 540 EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA 580
E + L +EI+ Y + V GDL+A
Sbjct: 1831 ERVGKRTGWL--------VEIVNYNVENQQYV--AAGDLRA 1861
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 3e-04
Identities = 89/678 (13%), Positives = 178/678 (26%), Gaps = 227/678 (33%)
Query: 308 GVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF-----DH 362
+++ E+ +II + L+ K V KF
Sbjct: 44 SILS---KEEIDHIIMSKDA--VSGTLRLFWTLLSKQ---------EEMVQKFVEEVLRI 89
Query: 363 HCPWVGNCIGAK------NHKYFVGYISSL-----LFMCCFVLYGIAKYWK-SKCQFQLS 410
+ ++ + I + + ++ L +F V + Y K + +L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELR 148
Query: 411 HEREVMFVVWDMLQCDGWV-------GFILLNAFVHAI-WITVLLSCQLYQIISLGMTTN 462
+ V ++ +L + + I W+ + ++
Sbjct: 149 PAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------- 199
Query: 463 ERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMK-------R 515
E + + N + H + RI ++ +
Sbjct: 200 EMLQ-KLLYQIDPNWTSR---SDHSSNI----------------KLRIHSIQAELRRLLK 239
Query: 516 YEVYTEPTSLS--DKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVD 572
+ Y L +V W A N +I+ ++ + D
Sbjct: 240 SKPY--ENCLLVLL---------NVQNAK-------AWNAFNLSCKIL--LTTRFKQVTD 279
Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
+ + + L H TL E + L+
Sbjct: 280 FLSAATT--------------THISLDHH--SMTLTPDEVKS----------------LL 307
Query: 633 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAK 691
K ++ QD L +P ++ S I+D + W +
Sbjct: 308 LKYLDCRPQD------LPREVLTT---NP--RRLSIIAES--IRDGLA-----TWDNWKH 349
Query: 692 -NHVAITTLVSHTSSLEIPNAQGLTP---------FMLLEENIGAP-------WLGKATV 734
N +TT++ SSL + L P + + P W
Sbjct: 350 VNCDKLTTIIE--SSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 735 DKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKL-ALF 793
D + + +H++S + ++P I + ++ L
Sbjct: 403 DVMVVVNK--------LHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSI 449
Query: 794 ISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITW-LFWITPV--VNFFVSLLFFS 850
+ Y + + FD L YF + +I L I + F ++F
Sbjct: 450 VDHYNIPKT-----FDSDDLIPPYLDQYF---YS-HIGHHLKNIEHPERMTLF-RMVFLD 499
Query: 851 TSGVLWYNFIK--------CWKGDPGVITAPQDEKF--RYIIE---LAERGTFEPLSF-- 895
+ F++ W ++ Q KF YI + ER L F
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 896 -CSTCLVRKPIRSKHCSI 912
L I SK+ +
Sbjct: 554 KIEENL----ICSKYTDL 567
Score = 42.1 bits (98), Expect = 9e-04
Identities = 52/320 (16%), Positives = 94/320 (29%), Gaps = 96/320 (30%)
Query: 71 LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIY 129
L+ K ++ QD L +P ++ S I+D + W +
Sbjct: 306 LLLKYLDCRPQD------LPREVLTT---NP--RRLSIIAES--IRDGLA-----TWDNW 347
Query: 130 AK-NHVAITTLVSHTSSLEIPNAQGLTP---------FMLLEENIGAP-------WLGKA 172
N +TT++ SSL + L P + + P W
Sbjct: 348 KHVNCDKLTTIIE--SSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 173 TVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKL-A 231
D + + +H++S + ++P I + ++ L
Sbjct: 401 KSDVMVVVNK--------LHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHR 447
Query: 232 LFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITW-LFWITPV--VNFFVSLLF 288
+ Y + + FD L YF + +I L I + F ++F
Sbjct: 448 SIVDHYNIPKT-----FDSDDLIPPYLDQYF---YS-HIGHHLKNIEHPERMTLF-RMVF 497
Query: 289 FSTSGVLWYNFIK--------CWKGDPGVITAPQDEKF--RYIIE---LAERGTFEPLSF 335
+ F++ W ++ Q KF YI + ER L F
Sbjct: 498 LD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 336 ---CSTCLVRKPIRSKHCSI 352
L I SK+ +
Sbjct: 552 LPKIEENL----ICSKYTDL 567
Score = 39.1 bits (90), Expect = 0.009
Identities = 71/582 (12%), Positives = 149/582 (25%), Gaps = 184/582 (31%)
Query: 146 LEIPNAQGLTPFM--LLEENIGAPWLGKA--TVDKITELK-DHYNTQQNIIHR----FSK 196
L + + F+ +L N +L T + + Y Q++ ++ F+K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 197 SKTTRARYMFAL----------PFV-MFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGT 245
+R + L V + G++G K + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---------GKTWVALD---------- 169
Query: 246 VMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKG 305
V ++ + + FW+ + N L Y W
Sbjct: 170 VCLSYKVQCKMDFKI-------------FWLN-LKNCNSPETVLEMLQKLLYQIDPNW-- 213
Query: 306 DPGVITAPQDEKFRYIIELAE-----RGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF 360
T+ D + + R + + + LV +++ + F
Sbjct: 214 -----TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA------KAWNAF 262
Query: 361 DHHCP--------WVGNCIGAKNHKYF--VGYISSL-------LFMCC------------ 391
+ C V + + A + + +L L +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 392 -----FVLYGIA----------KYWKSKCQFQLSHEREVMFVV---WDMLQCDGWVGFIL 433
L IA WK +L+ E V + + F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDR 377
Query: 434 LNAFVHAIWITVLLSCQLYQIISLGMTTNERMN----------ANR--------YH--HF 473
L+ F + I L +I + ++ M + +
Sbjct: 378 LSVFPPSAHIPT----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 474 IANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERID--W-------MKRYEVYTEPTS 524
+ + HR + ++ + L P +D + +K E T
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 525 LSDKYQ---FVEA-----GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG-----AIV 571
+ F+E N S TL +++ K +I +V
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-------QQLKFYKPYICDNDPKYERLV 545
Query: 572 DAIGGDLQ--ATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
+AI L L + D + + + + ++
Sbjct: 546 NAILDFLPKIEENLI---CSKYTDLLRIALMAEDEAIFEEAH 584
Score = 38.3 bits (88), Expect = 0.013
Identities = 70/595 (11%), Positives = 149/595 (25%), Gaps = 200/595 (33%)
Query: 65 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124
+V V + + +N + + S K P+ + + +D+++ +
Sbjct: 76 EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMY---IEQRDRLYNDNQ- 124
Query: 125 HWAIYAKNHV----AITTLVSHTSSLEIPNA----QG--------LTPFMLLEENI---- 164
++AK +V L L P G + + L +
Sbjct: 125 ---VFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 165 --GAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQA 222
WL + + + Q ++++ + T+R+ + + I I
Sbjct: 181 DFKIFWLNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAE 233
Query: 223 QIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNF 282
+ L +++ V N
Sbjct: 234 LRRLLKSKPYENCLLVLLNV--------------------------------QNAKAWNA 261
Query: 283 FVSLLFFSTSGVLWYNFIKCWK-----GDPGVITAPQDEKFRYIIELAERGTFEP---LS 334
F N C K V +I T P S
Sbjct: 262 F--------------NL-SC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 335 FCSTCLVRKP--IRSKHCSI----CNRCVAKF-DHHCPWVGNCIGAKNHKY--------- 378
L +P + + + + D W N K+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTI 358
Query: 379 ---FVGYISSLLFMCCFVLYGI------------AKYWKSKCQFQLSHEREVMFVVWD-- 421
+ + + F + + W + +VM VV
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------VIKSDVMVVVNKLH 412
Query: 422 ---MLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANR--------- 469
+++ + + +I++ L +L +L + + N +
Sbjct: 413 KYSLVEKQ-PKESTI---SIPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 470 -----Y------HHFIANPQGQFISPFHRGRLQNFVDF-----------TGWSCFGLFKP 507
Y HH + ++ F F+DF T W+ G
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 508 ERIDWMKRYEVY---TEPTS---LSDKYQFVE-AGQDVNEPDSETVTLLHWAAIN 555
+K Y+ Y +P ++ F+ +++ S+ LL A +
Sbjct: 523 TLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLRIALMA 574
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Length = 143
Score = 35.1 bits (80), Expect = 0.030
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAKF---DHHC 364
C C + HC CN C+ H C
Sbjct: 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 135
Score = 32.7 bits (74), Expect = 0.18
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAKLI 921
C C + HC CN C+ +
Sbjct: 102 ESCGICRIGPKEDFFHCLKCNLCLTTNL 129
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin
ligase, protein binding, lygase,; 1.60A {Homo sapiens}
PDB: 3ny2_A 3ny1_A
Length = 75
Score = 32.2 bits (73), Expect = 0.090
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 22/76 (28%)
Query: 331 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 390
EP C C V C +C C H ++H+Y + S C
Sbjct: 15 EPTYSCRDCAV-----DPTCVLCMECFLGSIH-----------RDHRYRM-TTSGGGGFC 57
Query: 391 -CFVLYGIAKYWKSKC 405
C G + WK
Sbjct: 58 DC----GDTEAWKEGP 69
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX,
zinc-binding protein, N-END RU ligase, metal binding
protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A
3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Length = 82
Score = 32.3 bits (73), Expect = 0.100
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 18/75 (24%)
Query: 331 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 390
EPL C C C +C C DH NH +
Sbjct: 19 EPLYRCHECGC-----DDTCVLCIHCFNPKDH-----------VNHHVCTDICTEFTSGI 62
Query: 391 CFVLYGIAKYWKSKC 405
C G + W S
Sbjct: 63 C--DCGDEEAWNSPL 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.21
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 21/47 (44%)
Query: 513 MKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIE 559
+K+ + SL Y DS L AI +E
Sbjct: 22 LKKLQ-----ASLK-LY----------ADDSAP-AL----AIKATME 47
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 30.5 bits (69), Expect = 0.40
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAK---LINP 923
+FC +C+VR S C CN V + L P
Sbjct: 37 TFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69
Score = 29.7 bits (67), Expect = 0.68
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAK 359
+FC +C+VR S C CN V +
Sbjct: 37 TFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 30.6 bits (69), Expect = 0.79
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAK 359
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
Score = 30.6 bits (69), Expect = 0.79
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAK 919
SFC TC+VR SK+C IC+ V K
Sbjct: 37 SFCKTCIVRYLETSKYCPICDVQVHK 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.0 bits (65), Expect = 1.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 894 SFCSTCLVRKPIRSKHCSICNRCVAKLINP 923
FC +C + + C IC++ + NP
Sbjct: 36 YFCESCALEHFRATPRCYICDQPTGGIFNP 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 29.8 bits (66), Expect = 2.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 335 FCSTCLVRKPIRSKHCSICNRCVAKFDHH 363
FCS CL + C C + + +H
Sbjct: 101 FCSQCLRDSLKNANTCPTCRKKINHKRYH 129
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 2.4
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 506 KPERIDWMKRYEVYTEPTSLSDKY---QFVEAGQDVNEPDSETV 546
K + +W +R E ++++ F + +PD++ +
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQ------QPDADII 154
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 28.9 bits (64), Expect = 4.0
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCI 371
SFCS C+ R C IC + + + + NCI
Sbjct: 85 SFCSYCINEWMKRKIECPICRKDIKSKT-YSLVLDNCI 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.452
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,451,780
Number of extensions: 889958
Number of successful extensions: 4236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2741
Number of HSP's successfully gapped: 617
Length of query: 923
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 821
Effective length of database: 3,853,851
Effective search space: 3164011671
Effective search space used: 3164011671
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.1 bits)