BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy39
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VFJ2|RM11_DROME 39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster
GN=mRpL11 PE=1 SV=1
Length = 196
Score = 226 bits (576), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 147/197 (74%), Gaps = 6/197 (3%)
Query: 1 MSKA-GKVFSKNVKKAVDNFRM---IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFN 56
MSKA GK+ K++KK V+ ++TNIPAG+A+ GPPLGP LG+R +NIA FCKDFN
Sbjct: 1 MSKAAGKL--KSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFN 58
Query: 57 EKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTL 116
KT ++KEG+PLP RI VN DRSY L IH PP +++LKQAAG+ +G M PGKE+ G +TL
Sbjct: 59 AKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITL 118
Query: 117 KHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVA 176
KH+YEIA IK +D T++ +C +I AR+ GI+VV ++D Y +FLEERK+IV
Sbjct: 119 KHLYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKVVREIDPAAYGEFLEERKLIVE 178
Query: 177 EQKKELEEAKEAKMLRT 193
+Q++EL+E +EAKMLRT
Sbjct: 179 QQRRELQEKREAKMLRT 195
>sp|Q9Y3B7|RM11_HUMAN 39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11
PE=1 SV=1
Length = 192
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 131/189 (69%), Gaps = 4/189 (2%)
Query: 1 MSKAGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTK 60
MSK G+ K V +IR + AGLA PGPPLGP LG+RGV+I FCK+FNE+TK
Sbjct: 1 MSKLGRAARGLRKPEVGG--VIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTK 58
Query: 61 DLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIY 120
D+KEG+PLPT+I V PDR++++ I +P SY+LK AAG+ KG + GKE+ G +TLKH+Y
Sbjct: 59 DIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVY 118
Query: 121 EIAKIKSEDSAFECET--LEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQ 178
EIA+IK++D AF + L + S+IGSARS+GI VV L +EE F +ER I +A Q
Sbjct: 119 EIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQ 178
Query: 179 KKELEEAKE 187
K+ A+E
Sbjct: 179 KEADLAAQE 187
>sp|Q2YDI0|RM11_BOVIN 39S ribosomal protein L11, mitochondrial OS=Bos taurus GN=MRPL11
PE=1 SV=2
Length = 192
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 21 MIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSY 80
+IRT + AG A PGPPLGP LG+RGV+I FCK+FNEKTKD+KEG+PLPT+I V PDR++
Sbjct: 19 VIRTILRAGQAMPGPPLGPILGQRGVSINQFCKEFNEKTKDIKEGIPLPTKIFVKPDRTF 78
Query: 81 KLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECET--LE 138
++ I +P SY+LK AAG+ KG GKE+ G +TLKH+YEIA++K++D AF + L
Sbjct: 79 EIKIGQPTVSYFLKAAAGIEKGARNTGKEVAGLVTLKHVYEIARVKAQDDAFALQDVPLS 138
Query: 139 YICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQK 179
+ S+IGSARS+GI VV L +EE F +ER + +A QK
Sbjct: 139 SVVRSIIGSARSLGIRVVKDLSSEELAAFQKERALFLAAQK 179
>sp|Q5XIE3|RM11_RAT 39S ribosomal protein L11, mitochondrial OS=Rattus norvegicus
GN=Mrpl11 PE=2 SV=1
Length = 203
Score = 186 bits (472), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 124/169 (73%), Gaps = 2/169 (1%)
Query: 21 MIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSY 80
+IR+ + AG A PGPPLGP LG+RGV+I FCK+FNEKTKD+KEG+PLPT+I + PDR++
Sbjct: 19 VIRSIVRAGQAIPGPPLGPILGQRGVSINQFCKEFNEKTKDIKEGIPLPTKIFIKPDRTF 78
Query: 81 KLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECET--LE 138
+L I +P SY+LK AAG+ KG + GKE+ G ++LKH+YEIA++K++D AF + L
Sbjct: 79 ELKIGQPTISYFLKAAAGIEKGARQTGKEVAGLVSLKHVYEIARVKAKDEAFAMQDVPLS 138
Query: 139 YICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEAKE 187
I S+IGSARS+GI VV L +E F +ER + +A QK+ + + ++
Sbjct: 139 SIVRSIIGSARSLGIRVVKDLSVDELAAFQKERAVFLAAQKRRIWQLRQ 187
>sp|Q9CQF0|RM11_MOUSE 39S ribosomal protein L11, mitochondrial OS=Mus musculus GN=Mrpl11
PE=2 SV=1
Length = 192
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 21 MIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSY 80
+IR+ + AG A PGPPLGP LG+RGV+I FCK+FNEKTKD+KEG+PLPT+I + PDR++
Sbjct: 19 VIRSIVRAGQAIPGPPLGPILGQRGVSINQFCKEFNEKTKDIKEGIPLPTKIFIKPDRTF 78
Query: 81 KLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECET--LE 138
+L I +P SY+LK AAG+ KG GKE+ G ++LKH+YEIA +K++D AF + L
Sbjct: 79 ELKIGQPTVSYFLKAAAGIEKGARHTGKEVAGLVSLKHVYEIACVKAKDDAFAMQDVPLS 138
Query: 139 YICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQK 179
+ S+IGSARS+GI VV L AEE + F +ER + +A QK
Sbjct: 139 SVVRSIIGSARSLGIRVVKDLSAEELEAFQKERAVFLAAQK 179
>sp|P34264|RM11_CAEEL Probable 39S ribosomal protein L11, mitochondrial OS=Caenorhabditis
elegans GN=B0303.15 PE=3 SV=1
Length = 195
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 131/193 (67%), Gaps = 5/193 (2%)
Query: 4 AGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLK 63
A +V K + K V ++RTNI A +AS PPLGP LG+RG+N+A FCK+FN++T K
Sbjct: 6 AARVRKKEIVKVVHGA-LLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKETGHFK 64
Query: 64 EGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGK-EIGGKLTLKHIYEI 122
+G+PLPTRI V PDR+Y L I P T++ LKQAAG+ +G K K EI GKLT+KH+YEI
Sbjct: 65 QGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAAGIGRG--KASKDEIVGKLTVKHLYEI 122
Query: 123 AKIKSEDSAFECETLEYICTSVIGSARSVGIEV-VDKLDAEEYQQFLEERKIIVAEQKKE 181
AKIKS D A + LE IC +I + R++GI+V LD E ++FL RK V Q K+
Sbjct: 123 AKIKSRDKALQHVPLEQICRMLIKTCRTLGIDVQYHDLDPVELKEFLVARKEKVDAQLKD 182
Query: 182 LEEAKEAKMLRTS 194
L + K AKMLRT+
Sbjct: 183 LADKKAAKMLRTT 195
>sp|Q9UTK2|RM19_SCHPO 54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1
Length = 144
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 89/136 (65%)
Query: 21 MIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSY 80
+I+ +PAG A+P PP+GP LG RG+ FCK+FN +T P+P +I V P R++
Sbjct: 8 IIKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTF 67
Query: 81 KLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYI 140
IH PPTS+ + + + KG P +I G+L+LKHIYEIAK+KS D + + L +
Sbjct: 68 TFTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSL 127
Query: 141 CTSVIGSARSVGIEVV 156
C SVIG+A+S+G++VV
Sbjct: 128 CKSVIGTAKSMGVKVV 143
>sp|Q160X3|RL11_ROSDO 50S ribosomal protein L11 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplK PE=3 SV=1
Length = 141
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN KT D+++G P PT I D+S+
Sbjct: 9 MKLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTADMEQGAPCPTVITYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ I PP SYYLK+AA ++ G P +E+ G ++ K + EIA+ K +D ++E
Sbjct: 69 MDIKTPPASYYLKKAAKLSSGAKTPSREVVGYVSSKQVREIAEAKMKD--LNATSIEAAM 126
Query: 142 TSVIGSARSVGIEV 155
++GSARS+GIEV
Sbjct: 127 KIILGSARSMGIEV 140
>sp|Q492B5|RL11_BLOPB 50S ribosomal protein L11 OS=Blochmannia pennsylvanicus (strain
BPEN) GN=rplK PE=3 SV=1
Length = 143
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ I AG A+P PP+GP LG++GVNI FCK FNE T L+ GLP+P I V DRS+
Sbjct: 10 IKLQISAGAANPSPPIGPALGQQGVNIIEFCKAFNENTAQLETGLPIPVVITVYSDRSFS 69
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I PP S LK+AA + G KP GK++ IYEIAKIK+ D +E I
Sbjct: 70 FITKTPPASILLKKAANIQSGSEKPNIINVGKISSAQIYEIAKIKAVD--MTGANIESIS 127
Query: 142 TSVIGSARSVGIEVVD 157
S+IG+ARS+G++V D
Sbjct: 128 RSIIGTARSIGLKVED 143
>sp|Q2RQU9|RL11_RHORT 50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplK PE=3 SV=1
Length = 142
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+RG+NI FCK FN T+ L+ G+P+P I DR++
Sbjct: 9 IKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAYGDRTFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I PP +Y+LK+AAG+ KG PGK G +T++ + +IA+ K D T+E
Sbjct: 69 YITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSPTIEAAV 126
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G++VV+
Sbjct: 127 QMVVGSARSMGLQVVE 142
>sp|Q0ANN9|RL11_MARMM 50S ribosomal protein L11 OS=Maricaulis maris (strain MCS10)
GN=rplK PE=3 SV=1
Length = 142
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+RGVNI FCK FN KT+++++G+P+PT I V D+S+
Sbjct: 9 IKLQVPAGAANPSPPIGPALGQRGVNIMEFCKAFNAKTQEMEKGMPIPTTITVFSDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I PP S++LK+AA +AKG P + G +++ EIA+ K D L+
Sbjct: 69 FAIATPPASFFLKKAAKIAKGSSTPSQTTAGTVSMAQCREIAEAKFND--LNANDLDQAT 126
Query: 142 TSVIGSARSVGIEVVD 157
+ GSARS+G++V +
Sbjct: 127 KIIAGSARSMGLQVTE 142
>sp|B4R8K1|RL11_PHEZH 50S ribosomal protein L11 OS=Phenylobacterium zucineum (strain
HLK1) GN=rplK PE=3 SV=1
Length = 143
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+RGVNI FCK+FN +T+ ++G PLPT I V D+S+
Sbjct: 9 IKLQVPAGAATPSPPIGPALGQRGVNIMGFCKEFNARTEKEQKGTPLPTVITVYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP +YY+KQA G+ G K G+E GK+T + EIA+ K +D +E
Sbjct: 69 FVTKTPPATYYIKQAVGLQSGSGKTGRETVGKITRAQLREIAEKKMKD--LNANDVEAAA 126
Query: 142 TSVIGSARSVGIEVVD 157
+ GSARS+G+++V+
Sbjct: 127 RIIEGSARSMGLQIVE 142
>sp|B9KBJ9|RL11_THENN 50S ribosomal protein L11 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplK PE=3 SV=1
Length = 141
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+ GVNI FCK FN +T D K G+ LP I V D+S+
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
II PP S+ LK+AAG+ G +P ++I GK+T K I EIAKIK D LE
Sbjct: 68 FIIKTPPASFLLKKAAGIESGSSEPKRKIVGKVTRKQIEEIAKIKMPD--LNANDLEAAM 125
Query: 142 TSVIGSARSVGIEVVD 157
+ G+ARS+GIEVVD
Sbjct: 126 RIIEGTARSMGIEVVD 141
>sp|B1L939|RL11_THESQ 50S ribosomal protein L11 OS=Thermotoga sp. (strain RQ2) GN=rplK
PE=3 SV=1
Length = 141
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+ GVNI FCK FN +T D K G+ LP I V D+S+
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
II PP S+ LK+AAG+ KG +P ++I GK+T K I EIAK K D +LE
Sbjct: 68 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPD--LNANSLEAAM 125
Query: 142 TSVIGSARSVGIEVVD 157
+ G+A+S+GIEVVD
Sbjct: 126 KIIEGTAKSMGIEVVD 141
>sp|P29395|RL11_THEMA 50S ribosomal protein L11 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplK PE=1 SV=3
Length = 141
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+ GVNI FCK FN +T D K G+ LP I V D+S+
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
II PP S+ LK+AAG+ KG +P ++I GK+T K I EIAK K D +LE
Sbjct: 68 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPD--LNANSLEAAM 125
Query: 142 TSVIGSARSVGIEVVD 157
+ G+A+S+GIEVVD
Sbjct: 126 KIIEGTAKSMGIEVVD 141
>sp|Q1GK54|RL11_RUEST 50S ribosomal protein L11 OS=Ruegeria sp. (strain TM1040) GN=rplK
PE=3 SV=1
Length = 141
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN KT D++ G P PT I D+S+
Sbjct: 9 MKLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTADMEPGAPCPTVITYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ I PP SYYLK+AA + G P +E G +T + EIA+ K +D +E
Sbjct: 69 MDIKTPPASYYLKKAAKIKSGANNPSRETAGTVTAAQVKEIAEAKMKD--LNANDIEAAM 126
Query: 142 TSVIGSARSVGIEV 155
++GSARS+GIEV
Sbjct: 127 QIILGSARSMGIEV 140
>sp|Q5LMP9|RL11_RUEPO 50S ribosomal protein L11 OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=rplK PE=3 SV=1
Length = 141
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN KT D++ G P PT I D+S+
Sbjct: 9 LKLQVPAGKANPSPPVGPALGQRGINIMEFCKAFNAKTADMEVGAPCPTVISYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ I PP SY+LK+AA + G KP +E G +T+ I EIA+ K +D ++
Sbjct: 69 MDIKTPPASYFLKKAAKIQSGANKPSRETAGTVTVAQIREIAEAKMKD--LNANDIDGAM 126
Query: 142 TSVIGSARSVGIEV 155
++GSARS+GIEV
Sbjct: 127 QIILGSARSMGIEV 140
>sp|Q89B16|RL11_BUCBP 50S ribosomal protein L11 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplK PE=3 SV=1
Length = 146
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ + AG A+P PP+GP LG++G+NI FCK FN +T +L++GLP+PT I V D+S+
Sbjct: 9 IKLQVSAGTANPSPPIGPALGQKGINIMEFCKAFNTRTNNLEKGLPIPTIITVYSDKSFS 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I PP S LK+AAG+ KG KP + G +T++ I +IA+IK D ++ I
Sbjct: 69 FITKTPPASVLLKKAAGITKGSSKPNQNKVGTITMQQILDIAQIKKID--MTGSNIDNIS 126
Query: 142 TSVIGSARSVGIEVVD 157
S+IG+A S+G+ + +
Sbjct: 127 KSIIGTANSIGLIIAE 142
>sp|A8F4F6|RL11_THELT 50S ribosomal protein L11 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplK PE=3 SV=1
Length = 141
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RGVNI FCK FN +T D K G+ LP I V DRS+
Sbjct: 9 VKLQLPAGKATPAPPVGPALGQRGVNIMEFCKRFNAETAD-KAGMILPVIITVYEDRSFS 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
++ PP S+ LK+AAG+ KG +P ++ GK+T K + EIAKIK D LE
Sbjct: 68 FVVKTPPASFLLKRAAGLEKGSGEPKRKNVGKVTRKQLEEIAKIKMPD--ITANDLEAAV 125
Query: 142 TSVIGSARSVGIEVVD 157
V G+A+S+GIE+VD
Sbjct: 126 KIVEGTAKSMGIEIVD 141
>sp|B6JER5|RL11_OLICO 50S ribosomal protein L11 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplK PE=3 SV=1
Length = 142
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ +++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKIEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP S++LKQAA + G PG++ GK+T + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMSFFLKQAAKVQSGSKTPGRDSAGKVTKAQVREIAEKKMKD--LNCDTVEAAM 126
Query: 142 TSVIGSARSVGIEV 155
V GSARS+G+EV
Sbjct: 127 KMVEGSARSMGLEV 140
>sp|Q3SSY4|RL11_NITWN 50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rplK PE=3 SV=1
Length = 142
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP +Y+LKQAA + G PG++ G LT + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMAYFLKQAAKIQSGSKTPGRDAAGTLTRAQVREIAEKKMKD--LNCDTVEAAM 126
Query: 142 TSVIGSARSVGIEVVD 157
+ V GSARS+G++V +
Sbjct: 127 SMVEGSARSMGLQVAE 142
>sp|P66052|RL11_HELPY 50S ribosomal protein L11 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|B2UUW4|RL11_HELPS 50S ribosomal protein L11 OS=Helicobacter pylori (strain Shi470)
GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|P66053|RL11_HELPJ 50S ribosomal protein L11 OS=Helicobacter pylori (strain J99)
GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|Q1CS64|RL11_HELPH 50S ribosomal protein L11 OS=Helicobacter pylori (strain HPAG1)
GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|B5Z8J9|RL11_HELPG 50S ribosomal protein L11 OS=Helicobacter pylori (strain G27)
GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|B6JN41|RL11_HELP2 50S ribosomal protein L11 OS=Helicobacter pylori (strain P12)
GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+EVVD
Sbjct: 126 KIVMGSARSMGVEVVD 141
>sp|Q17VN2|RL11_HELAH 50S ribosomal protein L11 OS=Helicobacter acinonychis (strain
Sheeba) GN=rplK PE=3 SV=1
Length = 141
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RGVNI FCK FNE+TKD+ +P I V D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGS-FNIPVIITVYQDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
I KPP + +K+A+G+ KG P K KLT K + EIA++K ED T+E
Sbjct: 68 FITKKPPVTDLIKKASGVEKGSDNPLKNKVAKLTHKQVEEIAQLKMED--LNTSTMEAAK 125
Query: 142 TSVIGSARSVGIEVVD 157
V+GSARS+G+E+VD
Sbjct: 126 KIVMGSARSMGVEIVD 141
>sp|A6Q1L9|RL11_NITSB 50S ribosomal protein L11 OS=Nitratiruptor sp. (strain SB155-2)
GN=rplK PE=3 SV=1
Length = 141
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 13 KKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRI 72
KK VD F++ IPAG A+P PP+GP LG+RGVNI FCK FNEKTKD+ G +P I
Sbjct: 3 KKVVDQFKL---QIPAGKANPSPPVGPALGQRGVNIMEFCKAFNEKTKDMM-GFNIPVVI 58
Query: 73 KVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAF 132
V DRS+ + +PP + +K+AAG+ KG P K GK+T + EIAK K D
Sbjct: 59 TVYSDRSFTFVTKQPPATDLIKKAAGIQKGSDNPLKNKVGKITQAQLEEIAKTKMPD--L 116
Query: 133 ECETLEYICTSVIGSARSVGIEVVD 157
LE + GS RS+G+E+VD
Sbjct: 117 NTTDLEAAKRIIAGSCRSMGVEIVD 141
>sp|Q89J69|RL11_BRAJA 50S ribosomal protein L11 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVIITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LKQAA + G PG++ GK+T + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMSYFLKQAAKIQSGSKAPGRDKAGKVTKAQVREIAEKKMKD--LNCDTIESAM 126
Query: 142 TSVIGSARSVGIEVV 156
V GSARS+G+EV
Sbjct: 127 KMVEGSARSMGLEVA 141
>sp|A5IJW7|RL11_THEP1 50S ribosomal protein L11 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplK PE=3 SV=1
Length = 141
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+ GVNI FCK FN +T D K G+ LP I V D+S+
Sbjct: 9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 67
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
II PP S+ L +AAG+ KG +P ++I GK+T K I EIA+ K D +LE
Sbjct: 68 FIIKTPPASFLLMKAAGLEKGSSEPKRKIVGKVTRKQIEEIARTKMPD--LNANSLEAAM 125
Query: 142 TSVIGSARSVGIEVVD 157
+ G+A+S+GIEVVD
Sbjct: 126 KIIEGTAKSMGIEVVD 141
>sp|Q11HA9|RL11_MESSB 50S ribosomal protein L11 OS=Mesorhizobium sp. (strain BNC1)
GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +++DL++G P+P I D+S+
Sbjct: 9 LKLQVPAGSATPSPPIGPALGQRGINIMEFCKAFNAQSQDLEKGSPIPVVITYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LK+AA + G +PGK+ G+++ + EIA+ K +D +E
Sbjct: 69 FTMKTPPVSYFLKKAANLKSGSKEPGKQSAGQISRAKVREIAETKMKD--LNANDVEAAM 126
Query: 142 TSVIGSARSVGIEVV 156
V GSARS+G+EVV
Sbjct: 127 RMVEGSARSMGLEVV 141
>sp|Q65W46|RL11_MANSM 50S ribosomal protein L11 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ + AG+A+P PP+GP LG++GVNI FCK FN +T+ L++GLP+P I V DRS+
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP KE GK+TL + +IA+ K+ D T+E
Sbjct: 69 FVTKTPPAAVLLKKAAGVKSGSGKPNKEKVGKVTLDQVRQIAETKAAD--MTGATIETKM 126
Query: 142 TSVIGSARSVGIEV 155
S+ G+ARS+G+ V
Sbjct: 127 KSIAGTARSMGLVV 140
>sp|Q7VRP3|RL11_BLOFL 50S ribosomal protein L11 OS=Blochmannia floridanus GN=rplK PE=3
SV=1
Length = 146
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 12 VKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTR 71
VKK V + I+ I A A+P PP+GP LG++G+NI FCKDFN +T D + GL LP
Sbjct: 3 VKKKVQS--CIKLQIEARSATPSPPIGPALGQQGINIMKFCKDFNTRTADFEMGLILPVV 60
Query: 72 IKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSA 131
I V DRS+ +I P + LK+AAG+ G KP GK+ + IYEIAKIK D
Sbjct: 61 ITVYVDRSFSFVIKTPTAVFLLKKAAGIKSGSEKPKCVSVGKVLISQIYEIAKIKLID-- 118
Query: 132 FECETLEYICTSVIGSARSVGIEVVDKL 159
LE S++G+ARS+G+EV D L
Sbjct: 119 MTSLNLESASKSIMGTARSIGLEVEDNL 146
>sp|Q1QN48|RL11_NITHX 50S ribosomal protein L11 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP +Y+LKQAA + G PG++ G++T + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMAYFLKQAAKIQSGSKAPGRDSAGQVTKAQVREIAEKKMKD--LNCDTVEAAM 126
Query: 142 TSVIGSARSVGIEVVD 157
+ V GSARS+G++V +
Sbjct: 127 SMVEGSARSMGLQVAE 142
>sp|A8LLJ9|RL11_DINSH 50S ribosomal protein L11 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rplK PE=3 SV=1
Length = 141
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN KT+D++ G P PT I D+S+
Sbjct: 9 MKLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQDMEPGAPCPTVITYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ I PP +YYLK+AA + G P ++ G +T+ + EIA+ K D +E
Sbjct: 69 MEIKTPPAAYYLKKAAKVKSGASTPSRQTVGTVTVAQVREIAEAKMRD--LNANDIEGAM 126
Query: 142 TSVIGSARSVGIEV 155
V+GSARS+GIEV
Sbjct: 127 KIVLGSARSMGIEV 140
>sp|Q1GT67|RL11_SPHAL 50S ribosomal protein L11 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplK PE=3 SV=1
Length = 143
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PPLGP LG+RGVNI FCK FN T L++G P PT I V D+S+
Sbjct: 9 IKLQVPAGTANPSPPLGPALGQRGVNIMEFCKAFNAATDGLEKGTPTPTIITVYADKSFS 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP +Y +K+AA + G +PGK GGK+ + EIA+IK +D +E
Sbjct: 69 FVTKTPPATYLIKKAANLKSGSKEPGKISGGKIARSKLAEIAEIKMKD--LNANDIEQAT 126
Query: 142 TSVIGSARSVGIEVVD 157
+ GSARS+G+EV +
Sbjct: 127 KIIEGSARSMGLEVTE 142
>sp|Q0BYA0|RL11_HYPNA 50S ribosomal protein L11 OS=Hyphomonas neptunium (strain ATCC
15444) GN=rplK PE=3 SV=1
Length = 148
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 90/142 (63%), Gaps = 8/142 (5%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ IPAG A+P PP+GP LG+RG+NI FCK FN +T+ ++EG+P+P I+ D+S+
Sbjct: 9 IKLQIPAGKANPSPPVGPALGQRGINIMEFCKAFNARTQSMEEGVPIPVVIQYYQDKSFT 68
Query: 82 LIIHKPPTSYYLKQAAGM------AKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECE 135
+ PP + LK+AAG+ A G KPG + GK+T+ + EIAK+K +D
Sbjct: 69 FVTKTPPATVLLKKAAGLKLGKKPASGSKKPGYDSVGKVTMDQVREIAKVKMDD--LNAN 126
Query: 136 TLEYICTSVIGSARSVGIEVVD 157
L+ + GSAR++G++VV+
Sbjct: 127 DLDAATKIIAGSARAMGLQVVE 148
>sp|Q211C4|RL11_RHOPB 50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP S++LKQAA + G PG+++ GK+T + EIA+ K +D C+++E
Sbjct: 69 FEMKTPPMSFFLKQAANVKSGSKLPGRDVAGKVTSAQVREIAERKMKD--LNCDSIEAAM 126
Query: 142 TSVIGSARSVGIEV 155
V GSARS+G++V
Sbjct: 127 KMVEGSARSMGLQV 140
>sp|A5ELP2|RL11_BRASB 50S ribosomal protein L11 OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LKQAA + G PG++ GK+T + EIA+ K +D C+++E
Sbjct: 69 FEMKTPPMSYFLKQAAKIQSGSKAPGRDKAGKVTKAQVREIAEKKMKD--LNCDSIESAM 126
Query: 142 TSVIGSARSVGIEVV 156
V GSARS+G+EV
Sbjct: 127 KMVEGSARSMGLEVA 141
>sp|B3QC05|RL11_RHOPT 50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplK PE=3 SV=1
Length = 142
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LKQAA + G PG++ GK+T + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMSYFLKQAAKIQSGSKLPGRDFAGKVTSAQVREIAEKKMKD--LNCDTVESAM 126
Query: 142 TSVIGSARSVGIEV 155
V GSARS+G+ V
Sbjct: 127 RMVEGSARSMGLRV 140
>sp|P62441|RL11_RHOPA 50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=rplK PE=1 SV=3
Length = 142
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LKQAA + G PG++ GK+T + EIA+ K +D C+T+E
Sbjct: 69 FEMKTPPMSYFLKQAAKIQSGSKLPGRDFAGKVTSAQVREIAEKKMKD--LNCDTVESAM 126
Query: 142 TSVIGSARSVGIEV 155
V GSARS+G+ V
Sbjct: 127 RMVEGSARSMGLRV 140
>sp|P10055|RL11_PROVU 50S ribosomal protein L11 OS=Proteus vulgaris GN=rplK PE=3 SV=2
Length = 142
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ + AG+A+P PP+GP LG++GVNI FCK FN KT+ +++GLP+P I V DRS+
Sbjct: 9 IKLQVSAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTESVEKGLPIPVVITVIADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP KE GK+T + EIA+ K+ D +E +
Sbjct: 69 FVTKTPPAAVLLKKAAGVKSGSGKPNKEKVGKITSAQVREIAETKAAD--LTGADVEAMM 126
Query: 142 TSVIGSARSVGIEVVD 157
S+ G+ARS+G+ V D
Sbjct: 127 RSIAGTARSMGLVVED 142
>sp|Q07KJ7|RL11_RHOP5 50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ +PAG A+P PP+GP LG+RG+NI FCK+FN +T+ ++ P+P I + DRS+
Sbjct: 9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP S++LKQAA + G PG+++ GK++ + EIA+ K +D C+++E
Sbjct: 69 FEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKD--LNCDSIESAM 126
Query: 142 TSVIGSARSVGIEV 155
V GSARS+G++V
Sbjct: 127 RMVEGSARSMGLQV 140
>sp|Q6FF94|RL11_ACIAD 50S ribosomal protein L11 OS=Acinetobacter sp. (strain ADP1)
GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 4/142 (2%)
Query: 14 KAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIK 73
K +D + I+ +PAG A+P PP+GP LG+RGVNI FCK+FN T+ L+ GLP+P I
Sbjct: 3 KKIDGY--IKLQVPAGKANPSPPIGPALGQRGVNIMAFCKEFNAATQKLEVGLPIPVVIT 60
Query: 74 VNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFE 133
V D+S+ I+ PP S LK+AAG+ KG P K GKLT + EIA K D
Sbjct: 61 VYNDKSFTFIMKTPPASILLKKAAGIQKGSSVPNKTKVGKLTRAQLEEIATTKEPD--LT 118
Query: 134 CETLEYICTSVIGSARSVGIEV 155
L+ ++ GSARS+G+EV
Sbjct: 119 GADLDARVRTIAGSARSMGLEV 140
>sp|A7HWQ0|RL11_PARL1 50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
I+ +PAG A+P PP+GP LG+RG+NI FCK FN T+ +++G+P+P I DRS+
Sbjct: 9 IKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAFSDRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP SY+LK+AA + G PG+ G +T+ EIA+ K D L+
Sbjct: 69 FAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNANDLDQAT 126
Query: 142 TSVIGSARSVGIEVVD 157
+ GSARS+G++VV+
Sbjct: 127 KIIAGSARSMGLQVVE 142
>sp|B0UUZ4|RL11_HAES2 50S ribosomal protein L11 OS=Haemophilus somnus (strain 2336)
GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ + AG+A+P PP+GP LG++GVNI FCK FN +T+ L++GLP+P I V DRS+
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP K+ GK+TL I +IA+ K+ D T+E
Sbjct: 69 FVTKTPPAAVLLKKAAGIKSGSSKPNKDKVGKVTLDQIRQIAETKAAD--MTGATIETKM 126
Query: 142 TSVIGSARSVGIEV 155
S+ G+ARS+G+ V
Sbjct: 127 KSIEGTARSMGLVV 140
>sp|Q0I0V2|RL11_HAES1 50S ribosomal protein L11 OS=Haemophilus somnus (strain 129Pt)
GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ + AG+A+P PP+GP LG++GVNI FCK FN +T+ L++GLP+P I V DRS+
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP K+ GK+TL I +IA+ K+ D T+E
Sbjct: 69 FVTKTPPAAVLLKKAAGIKSGSSKPNKDKVGKVTLDQIRQIAETKAAD--MTGATIETKM 126
Query: 142 TSVIGSARSVGIEV 155
S+ G+ARS+G+ V
Sbjct: 127 KSIEGTARSMGLVV 140
>sp|P44351|RL11_HAEIN 50S ribosomal protein L11 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rplK PE=3 SV=2
Length = 142
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ + AG+A+P PP+GP LG++GVNI FCK FN +T+ L++GLP+P I V DRS+
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP K+ GK+TL + +IA+ K+ D T+E
Sbjct: 69 FVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTLDQVRQIAETKAAD--MTGATIETKM 126
Query: 142 TSVIGSARSVGIEV 155
S+ G+ARS+G+ V
Sbjct: 127 KSIAGTARSMGLVV 140
>sp|A5U9X6|RL11_HAEIE 50S ribosomal protein L11 OS=Haemophilus influenzae (strain PittEE)
GN=rplK PE=3 SV=1
Length = 142
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 22 IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
++ + AG+A+P PP+GP LG++GVNI FCK FN +T+ L++GLP+P I V DRS+
Sbjct: 9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNARTESLEKGLPIPVVITVYADRSFT 68
Query: 82 LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
+ PP + LK+AAG+ G KP K+ GK+TL + +IA+ K+ D T+E
Sbjct: 69 FVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTLDQVRQIAETKAAD--MTGATIETKM 126
Query: 142 TSVIGSARSVGIEV 155
S+ G+ARS+G+ V
Sbjct: 127 KSIAGTARSMGLVV 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,447,310
Number of Sequences: 539616
Number of extensions: 3159423
Number of successful extensions: 10634
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8853
Number of HSP's gapped (non-prelim): 894
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)